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Acta crystallographica Section B, Structural science, crystal engineering and materials最新文献

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Magnetic crystallography comes of age. 磁晶体学成熟了。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-12-01 DOI: 10.1107/S2052520624010461
Carolyn P Brock, Anthony Michael Glazer

A special issue of Acta Crystallographica Section B reports the great progress made recently in the determination, reporting, and archiving of magnetic structures, of which there are now more than 2000. The infrastructure needed to support the field is now in place. The special issue also highlights new science made possible by these developments.

《晶体学报》B部分的一个特刊报道了最近在磁性结构的测定、报告和存档方面取得的巨大进展,目前已有2000多个磁性结构。支持实地所需的基础设施现已到位。本期特刊还重点介绍了这些发展所带来的新科学。
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引用次数: 0
Assessment of the exchange-hole dipole moment dispersion correction for the energy ranking stage of the seventh crystal structure prediction blind test. 第七次晶体结构预测盲测能量排序阶段的交换-空穴偶极矩色散修正评估。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-12-01 DOI: 10.1107/S2052520624002774
R Alex Mayo, Alastair J A Price, Alberto Otero-de-la-Roza, Erin R Johnson

The seventh blind test of crystal structure prediction (CSP) methods substantially increased the level of complexity of the target compounds relative to the previous tests organized by the Cambridge Crystallographic Data Centre. In this work, the performance of density-functional methods is assessed using numerical atomic orbitals and the exchange-hole dipole moment dispersion correction (XDM) for the energy-ranking phase of the seventh blind test. Overall, excellent performance was seen for the two rigid molecules (XXVII, XXVIII) and for the organic salt (XXXIII). However, for the agrochemical (XXXI) and pharmaceutical (XXXII) targets, the experimental polymorphs were ranked fairly high in energy amongst the provided candidate structures and inclusion of thermal free-energy corrections from the lattice vibrations was found to be essential for compound XXXI. Based on these results, it is proposed that the importance of vibrational free-energy corrections increases with the number of rotatable bonds.

与剑桥晶体学数据中心组织的前几次测试相比,晶体结构预测(CSP)方法的第七次盲测大大提高了目标化合物的复杂程度。在这项工作中,使用数值原子轨道和交换-空穴偶极矩分散校正(XDM)评估了密度函数方法在第七次盲测能量排序阶段的性能。总体而言,两种刚性分子(XXVII 和 XXVIII)和有机盐(XXXIII)的表现非常出色。然而,对于农用化学品(XXXI)和药物(XXXII)目标,在所提供的候选结构中,实验多晶型的能量排名相当靠前,而且对于化合物 XXXI 而言,加入来自晶格振动的热自由能修正是至关重要的。基于这些结果,我们提出振动自由能修正的重要性随着可旋转键的数量而增加。
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引用次数: 0
Contrasting conformational behaviors of molecules XXXI and XXXII in the seventh blind test of crystal structure prediction. 在晶体结构预测的第七次盲测中,分子 XXXI 和 XXXII 的构象行为截然不同。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-12-01 DOI: 10.1107/S2052520624005043
Gregory J O Beran, Cameron J Cook, Pablo A Unzueta

Accurate modeling of conformational energies is key to the crystal structure prediction of conformational polymorphs. Focusing on molecules XXXI and XXXII from the seventh blind test of crystal structure prediction, this study employs various electronic structure methods up to the level of domain-local pair natural orbital coupled cluster singles and doubles with perturbative triples [DLPNO-CCSD(T1)] to benchmark the conformational energies and to assess their impact on the crystal energy landscapes. Molecule XXXI proves to be a relatively straightforward case, with the conformational energies from generalized gradient approximation (GGA) functional B86bPBE-XDM changing only modestly when using more advanced density functionals such as PBE0-D4, ωB97M-V, and revDSD-PBEP86-D4, dispersion-corrected second-order Møller-Plesset perturbation theory (SCS-MP2D), or DLPNO-CCSD(T1). In contrast, the conformational energies of molecule XXXII prove difficult to determine reliably, and variations in the computed conformational energies appreciably impact the crystal energy landscape. Even high-level methods such as revDSD-PBEP86-D4 and SCS-MP2D exhibit significant disagreements with the DLPNO-CCSD(T1) benchmarks for molecule XXXII, highlighting the difficulty of predicting conformational energies for complex, drug-like molecules. The best-converged predicted crystal energy landscape obtained here for molecule XXXII disagrees significantly with what has been inferred about the solid-form landscape experimentally. The identified limitations of the calculations are probably insufficient to account for the discrepancies between theory and experiment on molecule XXXII, and further investigation of the experimental solid-form landscape would be valuable. Finally, assessment of several semi-empirical methods finds r2SCAN-3c to be the most promising, with conformational energy accuracy intermediate between the GGA and hybrid functionals and a low computational cost.

构象能量的精确建模是构象多晶体晶体结构预测的关键。本研究以第七次晶体结构预测盲测中的分子 XXXI 和 XXXII 为研究对象,采用了各种电子结构方法,包括域-局域对自然轨道耦合簇单倍和双倍扰动三倍[DLPNO-CCSD(T1)]方法,对构象能量进行了基准测试,并评估了它们对晶体能谱的影响。事实证明,分子 XXXI 是一个相对简单的例子,当使用 PBE0-D4、ωB97M-V 和 revDSD-PBEP86-D4、弥散校正二阶默勒-普利塞特扰动理论(SCS-MP2D)或 DLPNO-CCSD(T1)等更先进的密度函数时,广义梯度近似(GGA)函数 B86bPBE-XDM 的构象能变化不大。相比之下,分子 XXXII 的构象能很难可靠地确定,而且计算出的构象能的变化对晶体能谱有明显的影响。即使是高级方法,如 revDSD-PBEP86-D4 和 SCS-MP2D,在 XXXII 分子上也与 DLPNO-CCSD(T1)基准存在明显差异,这突出表明了预测复杂的类药物分子构象能的难度。这里得到的 XXXII 分子的最佳合并预测晶体能谱与实验推断的固体形态能谱有很大差异。计算中发现的局限性可能不足以解释 XXXII 分子理论与实验之间的差异,因此进一步研究实验中的固体形态景观将是非常有价值的。最后,对几种半经验方法的评估发现 r2SCAN-3c 是最有前途的方法,其构象能量精度介于 GGA 和混合函数之间,计算成本较低。
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引用次数: 0
Seed layer formation by deposition of microcrystallites on a revolving substrate: modeling of the effective linear elastic, piezoelectric, and dielectric coefficients. 在旋转基板上沉积微晶形成种子层:有效线弹性、压电和介电系数的建模。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-12-01 DOI: 10.1107/S2052520624010436
Arthur Ballato, John Ballato

Averaging of material coefficients of crystallites deposited at an angle to a rotating substrate is considered. A simple model is proposed, and applied to determine effective linear dielectric, piezoelectric, and elastic constants of all Laue groups. While these represent tensors of rank 2, 3, and 4, the method applies generally to tensors of any rank. Results are then particularized for 6mm point symmetry crystals, and applied numerically to zinc oxide, ZnO. It is shown that, by means of the rotating substrate method, depositions may be achieved having the equivalent of hexagonal anisotropy, enabling the creation of `engineered' structures.

考虑了与旋转基底成一定角度沉积的晶体的材料系数的平均。提出了一个简单的模型,并应用于确定所有劳厄群的有效线性介电常数、压电常数和弹性常数。虽然这些表示第2、3和4阶张量,但该方法通常适用于任何阶的张量。然后将结果特别用于6mm点对称晶体,并将其数值应用于氧化锌,ZnO。结果表明,通过旋转基板方法,可以实现具有等效六边形各向异性的沉积,从而实现“工程”结构的创建。
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引用次数: 0
Crystal structure of new quaternary intermetallic compounds R2MoSi2C (R = Y, Gd). 新型四元金属间化合物 R2MoSi2C(R = Y、Gd)的晶体结构。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-01 Epub Date: 2024-09-06 DOI: 10.1107/S2052520624007017
Anne Vernière, Léopold V B Diop, Ibrahima Sarr, Thierry Schweitzer, Bernard Malaman

The discovery of novel quaternary intermetallic compounds R2MoSi2C (R = Y, Gd) in the R-Mo-Si-C system is reported. Their crystal structure was investigated using single-crystal X-ray diffraction. It is shown that the Y2MoSi2C and Gd2MoSi2C compounds crystallize in the tetragonal space group P4/mbm (Pearson symbol tP12) with unit-cell parameters a = 6.9525 (18) Å, c = 4.1962 (16) Å, and a = 6.9945 (16) Å, c = 4.2020 (14) Å, respectively.

报告发现了 R-Mo-Si-C 系统中的新型四元金属间化合物 R2MoSi2C(R = Y、Gd)。利用单晶 X 射线衍射研究了它们的晶体结构。结果表明,Y2MoSi2C 和 Gd2MoSi2C 化合物在四方空间群 P4/mbm(皮尔逊符号 tP12)中结晶,单位晶胞参数分别为 a = 6.9525 (18) Å、c = 4.1962 (16) Å 和 a = 6.9945 (16) Å、c = 4.2020 (14) Å。
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引用次数: 0
A new Section Editor for Acta Cryst. B. Acta Cryst.B.
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-01 Epub Date: 2024-09-26 DOI: 10.1107/S2052520624009041
Louise N Dawe, Ashwini Nangia

Introducing the new Section Editor for Acta Cryst. B.

介绍《晶体学报》(Acta Cryst.B.
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引用次数: 0
New insights into the magnetism and magnetic structure of LuCrO3 perovskite. 对 LuCrO3 包晶的磁性和磁性结构的新认识。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-01 Epub Date: 2024-09-03 DOI: 10.1107/S2052520624006711
Angel Muñoz, Javier Gainza, Jian Shi Zhou, José Luis Martinez, Eva Céspedes, Maria Teresa Fernández-Díaz, José Antonio Alonso

A polycrystalline sample LuCrO3 has been characterized by neutron powder diffraction (NPD) and magnetization measurements. Its crystal structure has been Rietveld refined from NPD data in space group Pnma; this perovskite contains strongly tilted CrO6 octahedra with extremely bent Cr-O-Cr superexchange angles of ∼142°. The NPD data show that below Néel temperature (TN ≃ 131 K), the magnetic structure can be defined as an A-type antiferromagnetic arrangement of Cr3+ magnetic moments, aligned along the b axis, with a canting along the c axis. A noticeable magnetostrictive effect is observed in the unit-cell parameters and volume upon cooling down across TN. The AC magnetic susceptibility indicates the onset of magnetic ordering below 112.6 K; the magnetization isotherms below TN show a nonlinear behaviour that is associated with the described canting of the Cr3+ magnetic moments. From the Curie-Weiss law, the effective moment of the Cr3+ sublattice is found to be μeff = 3.55 μB (calculated 3.7 μB) while the ΘCW parameter yields a value of -155 K, indicating antiferromagnetic interactions. There is a conspicuous increase of TN upon the application of external pressure, which must be due to shortening of the Cr-O bond length under compression that increases the orbital overlap integral.

通过中子粉末衍射(NPD)和磁化测量对多晶样品 LuCrO3 进行了表征。根据中子粉末衍射数据对其晶体结构进行了里特维尔德精炼,其空间群为 Pnma;这种透辉石含有强烈倾斜的 CrO6 八面体,Cr-O-Cr 的超交换角为 142°。NPD 数据显示,在奈尔温度(TN ≃ 131 K)以下,磁性结构可定义为 Cr3+ 磁矩的 A 型反铁磁排列,沿 b 轴排列,沿 c 轴倾斜。在跨 TN 冷却时,观察到单位晶胞参数和体积有明显的磁致伸缩效应。交流磁感应强度表明在 112.6 K 以下开始出现磁有序化;TN 以下的磁化等温线显示出一种非线性行为,这与所述的 Cr3+ 磁矩倾斜有关。根据居里-魏斯定律,Cr3+ 亚晶格的有效磁矩为 μeff = 3.55 μB(计算值为 3.7 μB),而 ΘCW 参数值为 -155 K,表明存在反铁磁相互作用。在施加外部压力时,TN 值明显增加,这一定是由于在压缩过程中 Cr-O 键长度缩短,从而增加了轨道重叠积分。
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引用次数: 0
Importance of powder diffraction raw data archival in a curated database for materials science applications. 将粉末衍射原始数据存档于材料科学应用数据库的重要性。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-01 Epub Date: 2024-08-26 DOI: 10.1107/S2052520624006607
Soorya Kabekkodu, Thomas Blanton

In recent years, there is a significant interest from the crystallographic and materials science communities to have access to raw diffraction data. The effort in archiving raw data for access by the user community is spearheaded by the International Union of Crystallography (IUCr) Committee on Data. In materials science, where powder diffraction is extensively used, the challenge in archiving raw data is different to that from single crystal data, owing to the very nature of the contributions involved. Powder diffraction (X-ray or neutron) data consist of contributions from the material under study as well as instrument specific parameters. Having raw powder diffraction data can be essential in cases of analysing materials with poor crystallinity, disorder, micro structure (size/strain) etc. Here, the initiative and progress made by the International Centre for Diffraction Data (ICDDR) in archiving powder X-ray diffraction raw data in the Powder Diffraction FileTM (PDFR) database is outlined. The upcoming 2025 release of the PDF-5+ database will have more than 20 800 raw powder diffraction patterns that are available for reference.

近年来,晶体学和材料科学界对获取原始衍射数据兴趣浓厚。国际晶体学联盟(IUCr)数据委员会率先开展了原始数据归档工作,供用户社区使用。在广泛使用粉末衍射的材料科学领域,原始数据存档所面临的挑战不同于单晶体数据存档,这是由相关贡献的性质所决定的。粉末衍射(X 射线或中子)数据包括所研究材料的贡献以及仪器的特定参数。在分析结晶度差、无序、微结构(尺寸/应变)等材料时,原始粉末衍射数据至关重要。在此,国际衍射数据中心(ICDDR)将粉末 X 射线衍射原始数据归档到粉末衍射文件(PDFR)数据库中的举措和进展做一概述。即将于 2025 年发布的 PDF-5+ 数据库将包含 20 800 多个原始粉末衍射图样,可供参考。
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引用次数: 0
Substitutional/positional disorder of biguanide and guanylurea in the structure of a decavanadate complex [(Bg)(HV10O285-)]0.4[(HGU+)(V10O286-)]0.6(H2Met2+)2(H3O+)·8H2O. 癸钒酸盐复合物[(Bg)(HV10O285-)]0.4[(HGU+)(V10O286-)]0.6(H2Met2+)2(H3O+)-8H2O结构中双胍和鸟苷的取代/位置紊乱。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-01 Epub Date: 2024-09-02 DOI: 10.1107/S2052520624006929
Aungkana Chatkon, Kenneth J Haller, Joseph P Haller

A hydrated salt of decavanadate containing diprotonated metforminium(2+) (H2Met2+), hydronium (H3O+) and either neutral biguanide (Bg) or monoprotonated guanylurea (HGU+) exhibits a previously seen complex charge-stabilized hydrogen-bonded network [Chatkon et al. (2022). Acta Cryst. B78, 798-808]. Charge balance is achieved in two ways through substitutional disorder: a 0.6 occupied HGU+ cation is paired with a V10O286- anion, and a 0.4 occupied neutral Bg molecule is paired with a HV10O285- anion, with the remaining charge in both cases balanced by two H2Met2+ dications and one H3O+ monocation. Bg/HGU+ moieties exhibit bifurcated N-H...O hydrogen bonding to the H3O+ cation and are substitutionally/positionally disordered along with the H3O+ cation about an inversion center. The HGU+ V10O286- synthon seen in the previous study occurs again. Bg exhibits bifurcated hydrogen bonding from two amino groups to two rows of cluster O atoms running diagonally across the equatorial plane of the HV10O285- anion with a return hydrogen bond from the cluster H atom to the imino N atom of the Bg. Thus, a Bg...cluster synthon similar to the HGU+...cluster synthon previously reported is found. The disordered moieties occupy spaces with excess volume in the 3-D network structure. Interestingly, when the crystallographic unit cell of the current compound, whose X-ray data was collected at 100 K, is compared with that of a previous compound exhibiting the same supramolecular framework, unit-cell parameter c does not shorten as a and b expectantly do because of the lower data collection temperature. The lack of contraction on unit-cell parameter c is possibly due to the supramolecular structure.

含有二质子化二甲双胍(2+) (H2Met2+)、氢铵 (H3O+) 和中性双胍 (Bg) 或单质子化鸟苷酸 (HGU+) 的癸钒酸盐水合盐显示出一种以前见过的复杂电荷稳定氢键网络[Chatkon 等人 (2022)。 晶体学报 B78,798-808]。电荷平衡通过两种方式实现:一个 0.6 占位的 HGU+ 阳离子与一个 V10O286- 阴离子配对,一个 0.4 占位的中性 Bg 分子与一个 HV10O285- 阴离子配对,两种情况下的剩余电荷均由两个 H2Met2+ 二阳离子和一个 H3O+ 一阳离子平衡。Bg/HGU+ 分子与 H3O+ 阳离子的 N-H...O 氢键分叉,并与 H3O+ 阳离子一起围绕一个反转中心发生置换/位置紊乱。上次研究中出现的 HGU+ V10O286- 合子再次出现。Bg 表现出从两个氨基到两排簇 O 原子的分叉氢键,这些氢键斜向穿过 HV10O285- 阴离子的赤道平面,并从簇 H 原子到 Bg 的亚氨基 N 原子形成返回氢键。因此,我们发现了一种 Bg...簇合子,类似于之前报道的 HGU+...簇合子。无序分子占据了三维网络结构中体积过大的空间。有趣的是,当前化合物的 X 射线数据是在 100 K 温度下采集的,当把它的晶体学单胞与之前具有相同超分子框架的化合物的晶体学单胞进行比较时,由于数据采集温度较低,单胞参数 c 并没有像预期的 a 和 b 一样缩短。单胞参数 c 没有收缩可能是超分子结构造成的。
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引用次数: 0
Synthesis and properties of Sr2La2NiW2O12, a new S = 1 triangular lattice magnet. 新型 S = 1 三角晶格磁体 Sr2La2NiW2O12 的合成与特性。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-01 Epub Date: 2024-08-30 DOI: 10.1107/S2052520624007091
Anastasiia Smerechuk, Ana Guilherme Buzanich, Bernd Büchner, Sabine Wurmehl, Ryan Morrow

Magnetic materials featuring triangular arrangements of spins are frequently investigated as platforms hosting magnetic frustration. Hexagonal perovskites with ordered vacancies serve as excellent candidates for two-dimensional triangular magnetism due to the considerable separation of the magnetic planes. In this work, the effects of chemical pressure on the ferromagnetic ground state of Ba2La2NiW2O12 by substitution of Ba2+ with Sr2+ to produce Sr2La2NiW2O12 are investigated. The two materials are characterized using synchrotron-based XRD, XANES and EXAFS in addition to magnetometry in order to correlate their crystal structures and magnetic properties. Both materials form in space group R3, yet as a result of the enhanced bending of key bond angles due to the effects of chemical pressure, the TC value of the magnetic Ni2+ sublattice is reduced from ∼6 K in Ba2La2NiW2O12 to 4 K in Sr2La2NiW2O12.

以三角形自旋排列为特征的磁性材料经常被研究作为承载磁挫折的平台。具有有序空位的六方包晶石因磁性平面之间有相当大的间隔而成为二维三角磁性的绝佳候选材料。在这项研究中,通过用 Sr2+ 替代 Ba2+ 生成 Sr2La2NiW2O12,研究了化学压力对 Ba2La2NiW2O12 铁磁基态的影响。除了磁力测定法之外,还使用同步辐射 XRD、XANES 和 EXAFS 对这两种材料进行了表征,以便将它们的晶体结构和磁性能联系起来。这两种材料都形成 R3 空间群,但由于化学压力的影响导致关键键角的弯曲增强,磁性 Ni2+ 亚晶格的 TC 值从 Ba2La2NiW2O12 中的 ∼6 K 降至 Sr2La2NiW2O12 中的 4 K。
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引用次数: 0
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Acta crystallographica Section B, Structural science, crystal engineering and materials
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