Pub Date : 2024-10-01Epub Date: 2024-08-30DOI: 10.1107/S2052520624007352
Volker Kahlenberg, Hannes Krüger, Sonja Garber, Biljana Krüger, Eugen Libowitzky, Stefanie Kröll, Thomas S Hofer, Josef M Gallmetzer, Felix R S Purtscher
Synthesis experiments were conducted in the quaternary system K2O-Na2O-CaO-SiO2, resulting in the formation of a previously unknown compound with the composition K0.72Na1.71Ca5.79Si6O19. Single crystals of sufficient size and quality were recovered from a starting mixture with a K2O:Na2O:CaO:SiO2 molar ratio of 1.5:0.5:2:3. The mixture was confined in a closed platinum tube and slowly cooled from 1150°C at a rate of 0.1°C min-1 to 700°C before being finally quenched in air. The structure has tetragonal symmetry and belongs to space group P4122 (No. 91), with a = 7.3659 (2), c = 32.2318 (18) Å, V = 1748.78 (12) Å3, and Z = 4. The silicate anion consists of highly puckered, unbranched six-membered oligomers with the composition [Si6O19] and point group symmetry 2 (C2). Although several thousands of natural and synthetic oxosilicates have been structurally characterized, this compound is the first representative of a catena-hexasilicate anion, to the best of our knowledge. Structural investigations were completed using Raman spectroscopy. The spectroscopic data was interpreted and the bands were assigned to certain vibrational species with the support of density functional theory at the HSEsol level of theory. To determine the stability properties of the novel oligosilicate compared to those of the chemically and structurally similar cyclosilicate combeite, we calculated the electronegativity of the respective structures using the electronegativity equalization method. The results showed that the molecular electronegativity of the cyclosilicate was significantly higher than that of the oligostructure due to the different connectivities of the oxygen atoms within the molecular units.
{"title":"K<sub>0.72</sub>Na<sub>1.71</sub>Ca<sub>5.79</sub>Si<sub>6</sub>O<sub>19</sub> - the first oligosilicate based on [Si<sub>6</sub>O<sub>19</sub>]-hexamers and its stability compared to cyclosilicates.","authors":"Volker Kahlenberg, Hannes Krüger, Sonja Garber, Biljana Krüger, Eugen Libowitzky, Stefanie Kröll, Thomas S Hofer, Josef M Gallmetzer, Felix R S Purtscher","doi":"10.1107/S2052520624007352","DOIUrl":"10.1107/S2052520624007352","url":null,"abstract":"<p><p>Synthesis experiments were conducted in the quaternary system K<sub>2</sub>O-Na<sub>2</sub>O-CaO-SiO<sub>2</sub>, resulting in the formation of a previously unknown compound with the composition K<sub>0.72</sub>Na<sub>1.71</sub>Ca<sub>5.79</sub>Si<sub>6</sub>O<sub>19</sub>. Single crystals of sufficient size and quality were recovered from a starting mixture with a K<sub>2</sub>O:Na<sub>2</sub>O:CaO:SiO<sub>2</sub> molar ratio of 1.5:0.5:2:3. The mixture was confined in a closed platinum tube and slowly cooled from 1150°C at a rate of 0.1°C min<sup>-1</sup> to 700°C before being finally quenched in air. The structure has tetragonal symmetry and belongs to space group P4<sub>1</sub>22 (No. 91), with a = 7.3659 (2), c = 32.2318 (18) Å, V = 1748.78 (12) Å<sup>3</sup>, and Z = 4. The silicate anion consists of highly puckered, unbranched six-membered oligomers with the composition [Si<sub>6</sub>O<sub>19</sub>] and point group symmetry 2 (C<sub>2</sub>). Although several thousands of natural and synthetic oxosilicates have been structurally characterized, this compound is the first representative of a catena-hexasilicate anion, to the best of our knowledge. Structural investigations were completed using Raman spectroscopy. The spectroscopic data was interpreted and the bands were assigned to certain vibrational species with the support of density functional theory at the HSEsol level of theory. To determine the stability properties of the novel oligosilicate compared to those of the chemically and structurally similar cyclosilicate combeite, we calculated the electronegativity of the respective structures using the electronegativity equalization method. The results showed that the molecular electronegativity of the cyclosilicate was significantly higher than that of the oligostructure due to the different connectivities of the oxygen atoms within the molecular units.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"474-487"},"PeriodicalIF":1.3,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11457099/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103256","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-01Epub Date: 2024-07-17DOI: 10.1107/S2052520624005407
F Damay
A few real case examples are presented on how to report magnetic structures, with precise step-by-step explanations, following the guidelines of the IUCr Commission on Magnetic Structures [Perez-Mato et al. (2024). Acta Cryst. B80, 219-234]. Four examples have been chosen, illustrating different types of single-k magnetic orders, from the basic case to more complex ones, including odd-harmonics, and one multi-k order. In addition to acquainting researchers with the process of communicating commensurate magnetic structures, these examples also aim to clarify important concepts, which are used throughout the guidelines, such as the transformation to a standard setting of a magnetic space group.
按照国际大学理事会磁结构委员会的指导方针[Perez-Mato 等人 (2024). Acta Cryst. B80, 219-234],介绍了一些关于如何报告磁结构的真实案例,并附有精确的分步解释。我们选择了四个例子来说明不同类型的单 k 磁序,从基本情况到更复杂的情况,包括奇次谐波和一个多 k 磁序。除了让研究人员熟悉交流相称磁结构的过程外,这些示例还旨在澄清贯穿整个指南的重要概念,如磁性空间群的标准设置转换。
{"title":"Following the guidelines for communicating commensurate magnetic structures: real case examples.","authors":"F Damay","doi":"10.1107/S2052520624005407","DOIUrl":"10.1107/S2052520624005407","url":null,"abstract":"<p><p>A few real case examples are presented on how to report magnetic structures, with precise step-by-step explanations, following the guidelines of the IUCr Commission on Magnetic Structures [Perez-Mato et al. (2024). Acta Cryst. B80, 219-234]. Four examples have been chosen, illustrating different types of single-k magnetic orders, from the basic case to more complex ones, including odd-harmonics, and one multi-k order. In addition to acquainting researchers with the process of communicating commensurate magnetic structures, these examples also aim to clarify important concepts, which are used throughout the guidelines, such as the transformation to a standard setting of a magnetic space group.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":"80 Pt 4","pages":"235-248"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11301900/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141970355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-01Epub Date: 2024-07-30DOI: 10.1107/S2052520624005948
Edward Loukopoulos, Constantina Papatriantafyllopoulou, Eleni Moushi, Alexandros A Kitos, Anastasios J Tasiopoulos, Spyros P Perlepes, Vassilios Nastopoulos
In the course of an investigation of the supramolecular behaviour of copper(II) complexes with the 5-phenylimidazole/perchlorate ligand system (`blend') remarkable solvatomorphism has been observed. By employing a variety of crystallization solvents (polar protic, polar/non-polar aprotic), a series of 12 crystalline solvatomorphs with the general formula [Cu(ClO4)2(LH)4]·x(solvent) have been obtained [LH = 5-phenylimidazole, x(solvent) = 3.3(H2O) (1), 2(methanol) (2), 2(ethanol) (3), 2(1-propanol) (4), 2(2-propanol) (5), 2(2-butanol) (6), 2(dimethylformamide) (7), 2(acetone) (8), 2(tetrahydrofurane) (9), 2(1,4-dioxane) (10), 2(ethyl acetate) (11) and 1(diethyl ether) (12)]. The structures have been solved using single-crystal X-ray diffraction and the complexes were characterized by thermal analysis and infrared spectroscopy. The solvatomorphs are isostructural (triclinic, P1), with the exception of compound 9 (monoclinic, P21/n). The supramolecular structures and the role of the various solvents is discussed. All potential hydrogen-bond functionalities, both of the [Cu(ClO4)2(LH)4] units and of the solvents, are utilized in the course of the crystallization process. The supramolecular assembly in all structures is directed by strong recurring Nimidazole-H...Operchlorate motifs leading to robust scaffolds composed of the [Cu(ClO4)2(LH)4] host complexes. The solvents are located in channels and, with the exception of the disordered waters in 1 and the diethyl ether in 12, participate in hydrogen-bonding formation with the [Cu(ClO4)2(LH)4] complexes, serving as both hydrogen-bond acceptors and donors (for the polar protic solvents in 2-6), or solely as hydrogen-bond acceptors (for the polar/non-polar aprotic solvents in 7-11), linking the complexes and contributing to the stability of the crystalline compounds.
{"title":"Solvatomorphism in a series of copper(II) complexes with the 5-phenylimidazole/perchlorate system as ligands.","authors":"Edward Loukopoulos, Constantina Papatriantafyllopoulou, Eleni Moushi, Alexandros A Kitos, Anastasios J Tasiopoulos, Spyros P Perlepes, Vassilios Nastopoulos","doi":"10.1107/S2052520624005948","DOIUrl":"10.1107/S2052520624005948","url":null,"abstract":"<p><p>In the course of an investigation of the supramolecular behaviour of copper(II) complexes with the 5-phenylimidazole/perchlorate ligand system (`blend') remarkable solvatomorphism has been observed. By employing a variety of crystallization solvents (polar protic, polar/non-polar aprotic), a series of 12 crystalline solvatomorphs with the general formula [Cu(ClO<sub>4</sub>)<sub>2</sub>(LH)<sub>4</sub>]·x(solvent) have been obtained [LH = 5-phenylimidazole, x(solvent) = 3.3(H<sub>2</sub>O) (1), 2(methanol) (2), 2(ethanol) (3), 2(1-propanol) (4), 2(2-propanol) (5), 2(2-butanol) (6), 2(dimethylformamide) (7), 2(acetone) (8), 2(tetrahydrofurane) (9), 2(1,4-dioxane) (10), 2(ethyl acetate) (11) and 1(diethyl ether) (12)]. The structures have been solved using single-crystal X-ray diffraction and the complexes were characterized by thermal analysis and infrared spectroscopy. The solvatomorphs are isostructural (triclinic, P1), with the exception of compound 9 (monoclinic, P2<sub>1</sub>/n). The supramolecular structures and the role of the various solvents is discussed. All potential hydrogen-bond functionalities, both of the [Cu(ClO<sub>4</sub>)<sub>2</sub>(LH)<sub>4</sub>] units and of the solvents, are utilized in the course of the crystallization process. The supramolecular assembly in all structures is directed by strong recurring N<sub>imidazole</sub>-H...O<sub>perchlorate</sub> motifs leading to robust scaffolds composed of the [Cu(ClO<sub>4</sub>)<sub>2</sub>(LH)<sub>4</sub>] host complexes. The solvents are located in channels and, with the exception of the disordered waters in 1 and the diethyl ether in 12, participate in hydrogen-bonding formation with the [Cu(ClO<sub>4</sub>)<sub>2</sub>(LH)<sub>4</sub>] complexes, serving as both hydrogen-bond acceptors and donors (for the polar protic solvents in 2-6), or solely as hydrogen-bond acceptors (for the polar/non-polar aprotic solvents in 7-11), linking the complexes and contributing to the stability of the crystalline compounds.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":"80 Pt 4","pages":"347-359"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11301897/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141970356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A domain-resolved synchrotron single-crystal X-ray diffraction study of a LaAlO3 pseudo-merohedral twin crystal was successfully carried out in combination with powder diffraction data from the same sample. Multiscale structure information ranging from micro- to nano- to atomic scale was determined from one single crystal. There is almost no change of domain ratios at temperatures of less than 400 K indicating no movement of the domain wall. The changes in domain ratio indicating domain-wall movement were observed in the temperature range of 450 to 700 K, which is consistent with the result of the previous mechanical measurement. It is also found that the ratio of four twin components becomes equal (25%), just below phase transition temperature. These findings are important for domain engineering and theoretical studies related to LaAlO3. The temperature dependence of domain ratio was preserved in the heating and cooling cycle except for the first heating process to 840 K. Therefore, the domain structure after heating to 840 K is intrinsic to the crystal. Accurate structure parameters were determined through unit-cell parameter calibration and domain-resolved structure analysis. The method for calibration of unit-cell parameters from twin crystal data was derived and used to solve the inconsistent unit-cell parameters between single crystal and powder data in the present and previous studies.
结合同一样品的粉末衍射数据,成功地对 LaAlO3 伪正八面体孪晶进行了畴分辨同步加速器单晶 X 射线衍射研究。从一个单晶体中确定了从微尺度到纳米尺度再到原子尺度的多尺度结构信息。在低于 400 K 的温度下,畴比几乎没有变化,这表明畴壁没有移动。在 450 至 700 K 的温度范围内,观察到了表明畴壁运动的畴比变化,这与之前的机械测量结果一致。研究还发现,就在相变温度以下,四个孪晶成分的比率变为相等(25%)。这些发现对于畴工程和 LaAlO3 的相关理论研究非常重要。在加热和冷却循环过程中,除了第一次加热到 840 K 外,畴比率与温度的关系保持不变。因此,加热到 840 K 后的畴结构是晶体的固有结构。精确的结构参数是通过单位晶胞参数校准和畴分辨结构分析确定的。根据孪晶数据推导出了单胞参数校准方法,并利用该方法解决了本研究和以往研究中单晶和粉末数据单胞参数不一致的问题。
{"title":"Multiscale structure of LaAlO<sub>3</sub> from single-crystal X-ray diffraction.","authors":"Takashi Nishioka, Mibuki Hayashi, Hidetaka Kasai, Eiji Nishibori","doi":"10.1107/S2052520624004104","DOIUrl":"10.1107/S2052520624004104","url":null,"abstract":"<p><p>A domain-resolved synchrotron single-crystal X-ray diffraction study of a LaAlO<sub>3</sub> pseudo-merohedral twin crystal was successfully carried out in combination with powder diffraction data from the same sample. Multiscale structure information ranging from micro- to nano- to atomic scale was determined from one single crystal. There is almost no change of domain ratios at temperatures of less than 400 K indicating no movement of the domain wall. The changes in domain ratio indicating domain-wall movement were observed in the temperature range of 450 to 700 K, which is consistent with the result of the previous mechanical measurement. It is also found that the ratio of four twin components becomes equal (25%), just below phase transition temperature. These findings are important for domain engineering and theoretical studies related to LaAlO<sub>3</sub>. The temperature dependence of domain ratio was preserved in the heating and cooling cycle except for the first heating process to 840 K. Therefore, the domain structure after heating to 840 K is intrinsic to the crystal. Accurate structure parameters were determined through unit-cell parameter calibration and domain-resolved structure analysis. The method for calibration of unit-cell parameters from twin crystal data was derived and used to solve the inconsistent unit-cell parameters between single crystal and powder data in the present and previous studies.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"275-280"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141465515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-01Epub Date: 2024-07-15DOI: 10.1107/S2052520624005080
Frank C Hawthorne, Olivier C Gagné
Ion radii are derived here from the characteristic (grand mean) bond lengths for (i) 135 ions bonded to oxygen in 459 configurations (on the basis of coordination number) using 177 143 bond lengths extracted from 30 805 ordered coordination polyhedra from 9210 crystal structures; and (ii) 76 ions bonded to nitrogen in 137 configurations using 4048 bond lengths extracted from 875 ordered coordination polyhedra from 434 crystal structures. There are two broad categories of use for ion radii: (1) those methods which use the relative sizes of cation and anion radii to predict local atomic arrangements; (2) those methods which compare the radii of different cations (or the radii of different anions) to predict local atomic arrangements. There is much uncertainty with regard to the relative sizes of cations and anions, giving rise to the common failure of type (1) methods, e.g. Pauling's first rule which purports to relate the coordination adopted by cations to the radius ratio of the constituent cation and anion. Conversely, type (2) methods, which involve comparing the sizes of different cations with each other (or different anions with each other), can give very accurate predictions of site occupancies, physical properties etc. Methods belonging to type (2) can equally well use the characteristic bond lengths themselves (from which the radii are derived) in place of radii to develop correlations and predict crystal properties. Extensive quantum-mechanical calculations of electron density in crystals in the literature indicate that the radii of both cations and anions are quite variable with local arrangement, suggesting significant problems with any use of ion radii. However, the dichotomy between the experimentally derived ion radii and the quantum-mechanical calculations of electron density in crystals is removed by the recognition that ion radii are proxy variables for characteristic bond lengths in type (2) relations.
{"title":"New ion radii for oxides and oxysalts, fluorides, chlorides and nitrides.","authors":"Frank C Hawthorne, Olivier C Gagné","doi":"10.1107/S2052520624005080","DOIUrl":"10.1107/S2052520624005080","url":null,"abstract":"<p><p>Ion radii are derived here from the characteristic (grand mean) bond lengths for (i) 135 ions bonded to oxygen in 459 configurations (on the basis of coordination number) using 177 143 bond lengths extracted from 30 805 ordered coordination polyhedra from 9210 crystal structures; and (ii) 76 ions bonded to nitrogen in 137 configurations using 4048 bond lengths extracted from 875 ordered coordination polyhedra from 434 crystal structures. There are two broad categories of use for ion radii: (1) those methods which use the relative sizes of cation and anion radii to predict local atomic arrangements; (2) those methods which compare the radii of different cations (or the radii of different anions) to predict local atomic arrangements. There is much uncertainty with regard to the relative sizes of cations and anions, giving rise to the common failure of type (1) methods, e.g. Pauling's first rule which purports to relate the coordination adopted by cations to the radius ratio of the constituent cation and anion. Conversely, type (2) methods, which involve comparing the sizes of different cations with each other (or different anions with each other), can give very accurate predictions of site occupancies, physical properties etc. Methods belonging to type (2) can equally well use the characteristic bond lengths themselves (from which the radii are derived) in place of radii to develop correlations and predict crystal properties. Extensive quantum-mechanical calculations of electron density in crystals in the literature indicate that the radii of both cations and anions are quite variable with local arrangement, suggesting significant problems with any use of ion radii. However, the dichotomy between the experimentally derived ion radii and the quantum-mechanical calculations of electron density in crystals is removed by the recognition that ion radii are proxy variables for characteristic bond lengths in type (2) relations.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"326-339"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11301896/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141618951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-01Epub Date: 2024-07-03DOI: 10.1107/S2052520624004013
Masakatsu Tsubota, Masahito Watanabe
The synthesis of TaSe3 ring-shaped crystals displaying the coffee ring effect is investigated. By recrystallizing TaSe3 microcrystals dissolved in droplets of condensed Se gas, ring-shaped crystals were successfully grown. This novel method for ring formation effectively addressed the issue of connecting the edges of the crystal. Consequently, the synthesis method has the capability to grow MX3 ring-shaped crystals in any location where droplets can condense, can now be grown in specific locations, thus creating opportunities for advancements in electronic component development.
研究了显示咖啡环效应的 TaSe3 环形晶体的合成。通过对溶解在凝结 Se 气体液滴中的 TaSe3 微晶进行再结晶,成功地生长出了环形晶体。这种新颖的环形晶体形成方法有效地解决了晶体边缘的连接问题。因此,这种合成方法能够在液滴能够凝结的任何位置生长出 MX3 环形晶体,现在也可以在特定位置生长,从而为电子元件的开发带来了机遇。
{"title":"Ring formation of transition metal trichalcogenide TaSe<sub>3</sub> using vapor liquid process.","authors":"Masakatsu Tsubota, Masahito Watanabe","doi":"10.1107/S2052520624004013","DOIUrl":"10.1107/S2052520624004013","url":null,"abstract":"<p><p>The synthesis of TaSe<sub>3</sub> ring-shaped crystals displaying the coffee ring effect is investigated. By recrystallizing TaSe<sub>3</sub> microcrystals dissolved in droplets of condensed Se gas, ring-shaped crystals were successfully grown. This novel method for ring formation effectively addressed the issue of connecting the edges of the crystal. Consequently, the synthesis method has the capability to grow MX<sub>3</sub> ring-shaped crystals in any location where droplets can condense, can now be grown in specific locations, thus creating opportunities for advancements in electronic component development.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"305-310"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141490516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-01Epub Date: 2024-07-04DOI: 10.1107/S2052520624005201
Anna Gaydamaka, Nikita Bogdanov, Boris Zakharov, Sergey Goryainov, Elena Boldyreva
The crystal structure of lithium xanthinate hydrate was studied by single crystal X-ray diffraction and Raman spectroscopy on cooling to 100 K and under compression to 5.3 GPa. A phase transition at ∼4 GPa is observed. No phase transitions occur on cooling. Anisotropy of lattice strain and changes in intermolecular interactions are compared.
通过单晶 X 射线衍射和拉曼光谱研究了水合黄原酸锂在冷却至 100 K 和压缩至 5.3 GPa 时的晶体结构。在 ∼4 GPa 处观察到相变。冷却时没有发生相变。比较了晶格应变的各向异性和分子间相互作用的变化。
{"title":"A comparative study of the effect of high-pressure and low temperature on the crystal structure of lithium xanthinate hydrate.","authors":"Anna Gaydamaka, Nikita Bogdanov, Boris Zakharov, Sergey Goryainov, Elena Boldyreva","doi":"10.1107/S2052520624005201","DOIUrl":"10.1107/S2052520624005201","url":null,"abstract":"<p><p>The crystal structure of lithium xanthinate hydrate was studied by single crystal X-ray diffraction and Raman spectroscopy on cooling to 100 K and under compression to 5.3 GPa. A phase transition at ∼4 GPa is observed. No phase transitions occur on cooling. Anisotropy of lattice strain and changes in intermolecular interactions are compared.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"311-325"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141562419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-01Epub Date: 2024-06-18DOI: 10.1107/S2052520624003421
Anna Krawczuk, Alessandro Genoni
Quantum crystallography is an emerging research field of science that has its origin in the early days of quantum physics and modern crystallography when it was almost immediately envisaged that X-ray radiation could be somehow exploited to determine the electron distribution of atoms and molecules. Today it can be seen as a composite research area at the intersection of crystallography, quantum chemistry, solid-state physics, applied mathematics and computer science, with the goal of investigating quantum problems, phenomena and features of the crystalline state. In this article, the state-of-the-art of quantum crystallography will be described by presenting developments and applications of novel techniques that have been introduced in the last 15 years. The focus will be on advances in the framework of multipole model strategies, wavefunction-/density matrix-based approaches and quantum chemical topological techniques. Finally, possible future improvements and expansions in the field will be discussed, also considering new emerging experimental and computational technologies.
量子晶体学是一个新兴的科学研究领域,它起源于量子物理学和现代晶体学的早期,当时人们几乎立即想到可以利用 X 射线辐射来确定原子和分子的电子分布。如今,它可被视为晶体学、量子化学、固体物理、应用数学和计算机科学交叉领域的一个综合研究领域,其目标是研究量子问题、现象和晶体状态的特征。本文将通过介绍过去 15 年中引入的新技术的发展和应用,描述量子晶体学的最新进展。重点将放在多极模型策略、基于波函数/密度矩阵的方法和量子化学拓扑技术框架的进展上。最后,还将讨论该领域未来可能的改进和扩展,并考虑新出现的实验和计算技术。
{"title":"Current developments and trends in quantum crystallography.","authors":"Anna Krawczuk, Alessandro Genoni","doi":"10.1107/S2052520624003421","DOIUrl":"10.1107/S2052520624003421","url":null,"abstract":"<p><p>Quantum crystallography is an emerging research field of science that has its origin in the early days of quantum physics and modern crystallography when it was almost immediately envisaged that X-ray radiation could be somehow exploited to determine the electron distribution of atoms and molecules. Today it can be seen as a composite research area at the intersection of crystallography, quantum chemistry, solid-state physics, applied mathematics and computer science, with the goal of investigating quantum problems, phenomena and features of the crystalline state. In this article, the state-of-the-art of quantum crystallography will be described by presenting developments and applications of novel techniques that have been introduced in the last 15 years. The focus will be on advances in the framework of multipole model strategies, wavefunction-/density matrix-based approaches and quantum chemical topological techniques. Finally, possible future improvements and expansions in the field will be discussed, also considering new emerging experimental and computational technologies.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"249-274"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11301899/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141417260","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-01Epub Date: 2024-06-28DOI: 10.1107/S2052520624004451
Aleksandra Deptuch, Stanisław Baran, Lukas Keller, Altifani Rizky Hayyu, Andrzej Szytuła
Results of the neutron powder diffraction measurements carried out for R5Pt2In4 (R = Tb-Tm) are reported. The compounds crystallize in an orthorhombic crystal structure of the Lu5Ni2In4-type with the rare earth atoms occupying three different sublattices. Neutron diffraction data reveal that at low temperatures the rare earth magnetic moments order below the critical temperature equal to 105, 93, 28, 12 and 3.8 K for R = Tb, Dy, Ho, Er and Tm, respectively. With decreasing temperature the rare earth magnetic moments at the 2a and 4g2 sites order first, while the moments at the 4g1 site order at lower temperatures. Ferrimagnetic order along the c axis, described by the propagation vector k1 = [0, 0, 0], develops in Tb5Pt2In4 below the Curie temperature (TC = 105 K). At lower temperatures, an antiferromagnetic component in the ab plane appears. The component is incommensurate with the crystal structure (k2 = [0, 0.66, ½]), but it turns into a commensurate one (k3 = [0, 0, ½]) with decreasing temperature. Antiferromagnetic order along the c axis, described by k4 = [½, 0, 0], is found in Dy5Pt2In4 below the Néel temperature (TN = 93 K). The k4-related component disappears below 80 K and the magnetic structure transforms into a ferro/ferrimagnetic one described by k1 = [0, 0, 0]. Further decrease in temperature leads to the appearance of an incommensurate antiferromagnetic component within the ab plane below 10 K (k2 = [0, 0.45, ½]), which finally turns into a commensurate one (k5 = [0, ½, ½]). In Ho5Pt2In4, a sine-modulated magnetic structure with moments parallel to the c axis (k6 = [⅓,0,0]) is observed below 28 K. With a decrease in temperature, new components, related to k1 = [0, 0, 0] (bc plane) and k4 = [½, 0, 0] (c axis), appear. The coexistence of two orderings - in the ab plane (k1 = [0, 0, 0]) and a modulated one with moments along the b axis (k7 = [kx, 0, 0]) - is found in Er5Pt2In4 below 12 K. Decreasing temperature leads to the order-order transformation of the k1-related component to another one with magnetic moments still constrained to the ab plane and preserved value of the propagation vector (i.e. k1 = [0, 0, 0]). Tm5Pt2In4 orders antiferromagnetically below TN = 3.8 K. Thulium magnetic moments lie in the ab plane, while the magnetic structure is described by k5 = [0, ½ , ½]. The direction of magnetic moments depends on the rare earth element involved and indicates an influence of single ion anisotropy resulting from interaction with the crystalline electric field.
{"title":"Magnetic structures in R<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> (R = Tb-Tm) investigated by neutron powder diffraction.","authors":"Aleksandra Deptuch, Stanisław Baran, Lukas Keller, Altifani Rizky Hayyu, Andrzej Szytuła","doi":"10.1107/S2052520624004451","DOIUrl":"10.1107/S2052520624004451","url":null,"abstract":"<p><p>Results of the neutron powder diffraction measurements carried out for R<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> (R = Tb-Tm) are reported. The compounds crystallize in an orthorhombic crystal structure of the Lu<sub>5</sub>Ni<sub>2</sub>In<sub>4</sub>-type with the rare earth atoms occupying three different sublattices. Neutron diffraction data reveal that at low temperatures the rare earth magnetic moments order below the critical temperature equal to 105, 93, 28, 12 and 3.8 K for R = Tb, Dy, Ho, Er and Tm, respectively. With decreasing temperature the rare earth magnetic moments at the 2a and 4g2 sites order first, while the moments at the 4g1 site order at lower temperatures. Ferrimagnetic order along the c axis, described by the propagation vector k<sub>1</sub> = [0, 0, 0], develops in Tb<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> below the Curie temperature (T<sub>C</sub> = 105 K). At lower temperatures, an antiferromagnetic component in the ab plane appears. The component is incommensurate with the crystal structure (k<sub>2</sub> = [0, 0.66, ½]), but it turns into a commensurate one (k<sub>3</sub> = [0, 0, ½]) with decreasing temperature. Antiferromagnetic order along the c axis, described by k<sub>4</sub> = [½, 0, 0], is found in Dy<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> below the Néel temperature (T<sub>N</sub> = 93 K). The k<sub>4</sub>-related component disappears below 80 K and the magnetic structure transforms into a ferro/ferrimagnetic one described by k<sub>1</sub> = [0, 0, 0]. Further decrease in temperature leads to the appearance of an incommensurate antiferromagnetic component within the ab plane below 10 K (k<sub>2</sub> = [0, 0.45, ½]), which finally turns into a commensurate one (k<sub>5</sub> = [0, ½, ½]). In Ho<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub>, a sine-modulated magnetic structure with moments parallel to the c axis (k<sub>6</sub> = [⅓,0,0]) is observed below 28 K. With a decrease in temperature, new components, related to k<sub>1</sub> = [0, 0, 0] (bc plane) and k<sub>4</sub> = [½, 0, 0] (c axis), appear. The coexistence of two orderings - in the ab plane (k<sub>1</sub> = [0, 0, 0]) and a modulated one with moments along the b axis (k<sub>7</sub> = [k<sub>x</sub>, 0, 0]) - is found in Er<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> below 12 K. Decreasing temperature leads to the order-order transformation of the k<sub>1</sub>-related component to another one with magnetic moments still constrained to the ab plane and preserved value of the propagation vector (i.e. k<sub>1</sub> = [0, 0, 0]). Tm<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> orders antiferromagnetically below T<sub>N</sub> = 3.8 K. Thulium magnetic moments lie in the ab plane, while the magnetic structure is described by k<sub>5</sub> = [0, ½ , ½]. The direction of magnetic moments depends on the rare earth element involved and indicates an influence of single ion anisotropy resulting from interaction with the crystalline electric field.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"281-293"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141465514","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-01Epub Date: 2024-07-01DOI: 10.1107/S2052520624005055
Anna Ben, Marta Hoelm, Lilianna Chęcińska
The structures of three multicomponent crystals formed with imidazole-based drugs, namely metronidazole, ketoconazole and miconazole, in conjunction with trithiocyanuric acid are characterized. Each of the obtained adducts represents a different category of crystalline molecular forms: a cocrystal, a salt and a cocrystal of salt. The structural analysis revealed that in all cases, the N-H...N hydrogen bond is responsible for the formation of acid-base pairs, regardless of whether proton transfer occurs or not, and these molecular pairs are combined to form unique supramolecular motifs by centrosymmetric N-H...S interactions between acid molecules. The complex intermolecular forces acting in characteristic patterns are discussed from the geometric and energetic perspectives, involving Hirshfeld surface analysis, pairwise energy estimation, and natural bond orbital calculations.
{"title":"Supramolecular architectures in multicomponent crystals of imidazole-based drugs and trithiocyanuric acid.","authors":"Anna Ben, Marta Hoelm, Lilianna Chęcińska","doi":"10.1107/S2052520624005055","DOIUrl":"10.1107/S2052520624005055","url":null,"abstract":"<p><p>The structures of three multicomponent crystals formed with imidazole-based drugs, namely metronidazole, ketoconazole and miconazole, in conjunction with trithiocyanuric acid are characterized. Each of the obtained adducts represents a different category of crystalline molecular forms: a cocrystal, a salt and a cocrystal of salt. The structural analysis revealed that in all cases, the N-H...N hydrogen bond is responsible for the formation of acid-base pairs, regardless of whether proton transfer occurs or not, and these molecular pairs are combined to form unique supramolecular motifs by centrosymmetric N-H...S interactions between acid molecules. The complex intermolecular forces acting in characteristic patterns are discussed from the geometric and energetic perspectives, involving Hirshfeld surface analysis, pairwise energy estimation, and natural bond orbital calculations.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"294-304"},"PeriodicalIF":1.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11301895/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141490517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}