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FuzzyDeepNets based feature extraction for classification of mammograms 基于模糊深度网络的乳房x线照片分类特征提取
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100117
Jyoti Dabass , Manju Dabass , Bhupender Singh Dabass

Breast cancer is one of the most aggressive tumors that claims the lives of women each year. Radiologists recommend mammography to detect cancer at the early stages. Masses, micro-calcifications, and distortion in mammography indicate breast cancer. This paper proposes FuzzyDeepNets for extracting the features and the Hanman transform classifier for the classification of mammograms. In this work, mammograms are categorized based on abnormality present, type of abnormality, and the characteristics of the abnormality present. FuzzyDeepNets allows us to skip the layers thereby reducing the computational complexity of the deep learning architectures. Principal component analysis helps in reducing the dimensionality of the selected features. The results achieved using proposed method on publicly available mini-MIAS, DDSM, INbreast and private database surpasses the results of the state-of-the-art techniques used for comparison. Results of the proposed method are clinically relevant as they are validated by expert radiologists.

乳腺癌是每年夺去女性生命的最具侵略性的肿瘤之一。放射科医生建议在早期阶段进行乳房x光检查以发现癌症。乳房x光检查中的肿块、微钙化和变形提示乳腺癌。本文提出了模糊深度网络用于特征提取,汉曼变换分类器用于乳房x线照片分类。在这项工作中,乳房x线照片是根据异常的存在,异常的类型,以及异常的特征来分类的。FuzzyDeepNets允许我们跳过层,从而降低深度学习架构的计算复杂性。主成分分析有助于降低所选特征的维数。在公开提供的迷你mias、DDSM、INbreast和私人数据库上使用拟议方法取得的结果超过了用于比较的最先进技术的结果。所提出的方法的结果是临床相关的,因为他们是由专家放射科医生验证。
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引用次数: 0
A cascade deep learning model for diagnosing pharyngeal acid reflux episodes using hypopharyngeal multichannel intraluminal Impedance-pH signals 使用下咽多通道腔内阻抗- ph信号诊断咽酸反流发作的级联深度学习模型
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100131
Jachih Fu , Ping-Huan Lee , Chen-Chi Wang, Ying-Cheng Lin, Chun-Yi Chuang, Yung-An Tsou, Yen-Yang Chen, Sheng-Shun Yang, Han-Chung Lien

Detecting pharyngeal acid reflux (PAR) episodes from 24-h ambulatory hypopharyngeal multichannel intraluminal impedance-pH (HMII-pH) signals is crucial for diagnosing laryngopharyngeal reflux (LPR). Currently, a lack of effective software for PAR episode detection requires time-consuming manual interpretation, which is prone to inter-rater variability. This study introduces a deep learning-based artificial intelligence (AI) system for PAR episode detection and diagnosis using HMII-pH signals. Ninety patients with suspected LPR and 28 healthy volunteers underwent HMII-pH testing in three Taiwanese medical centers. Candidate PAR episodes were defined as esophagopharyngeal pH drops exceeding 2 units, with nadir pH below 5 within 30 seconds during esophageal acidification. A consensus review by three experts validated 84 PAR episodes in 17 subjects. Data preprocessing identified 225 candidate PAR episodes, including 84 PAR episodes and 141 swallows/artifacts, were divided into training, validation, and test datasets (6:2:2 ratio). Three cascade deep learning AI models were trained. Among them, the cascade Multivariate Long Short-Term Memory with Fully Convolutional Network (MLSTM-FCN) model performed best in the test dataset. At the episode level, this model achieved 0.936 accuracy, 0.941 precision, 0.889 recall, 0.966 specificity, 0.914 F1 score, and 0.864 Matthew's correlation coefficient (MCC). For subject-level evaluation, the corresponding metrics were 0.917 accuracy, 1.000 precision, 0.818 recall, 1.000 specificity, 0.900 F1 score, and 0.842 MCC. In conclusion, the cascade MLSTM-FCN model demonstrates robust accuracy in diagnosing PAR episodes from HMII-pH signals, offering a promising tool for efficient and consistent PAR episode detection in LPR diagnosis.

从24小时动态下咽多通道腔内阻抗- ph (HMII-pH)信号检测咽酸反流(PAR)发作对于诊断喉咽反流(LPR)至关重要。目前,由于缺乏有效的PAR事件检测软件,需要耗费大量时间进行人工解释,这很容易造成不同等级之间的差异。本研究介绍了一种基于深度学习的人工智能(AI)系统,用于使用hmi - ph信号进行PAR事件检测和诊断。90名疑似LPR患者和28名健康志愿者在台湾三个医疗中心进行了hmi - ph检测。候选PAR发作定义为食管咽pH值下降超过2个单位,食管酸化过程中30秒内pH值最低低于5。三位专家的共识审查证实了17名受试者的84次PAR发作。数据预处理确定了225个候选PAR集,包括84个PAR集和141个燕子/伪影,按6:2:2的比例分为训练、验证和测试数据集。训练了三个级联深度学习人工智能模型。其中,基于全卷积网络的级联多元长短期记忆(MLSTM-FCN)模型在测试数据集中表现最好。在事件水平上,该模型的准确率为0.936,精密度为0.941,召回率为0.889,特异性为0.966,F1评分为0.914,马修相关系数(MCC)为0.864。受试者水平评价的指标为正确率0.917,精密度1.000,召回率0.818,特异性1.000,F1评分0.900,MCC 0.842。总之,级联MLSTM-FCN模型在从hmi - ph信号中诊断PAR发作方面具有较强的准确性,为LPR诊断中高效和一致的PAR发作检测提供了一个有前途的工具。
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引用次数: 0
DFU_MultiNet: A deep neural network approach for detecting diabetic foot ulcers through multi-scale feature fusion using the DFU dataset dfu_multiet:一种基于DFU数据集的深度神经网络方法,通过多尺度特征融合检测糖尿病足溃疡
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100128
Shuvo Biswas , Rafid Mostafiz , Bikash Kumar Paul , Khandaker Mohammad Mohi Uddin , Md Masudur Rahman , F.N.U. Shariful

Diabetic foot ulcer (DFU) is a common problem among people with diabetes that can result in amputation of the affected limb. Modern DFU treatment and diagnosis methods are expensive and time-consuming. Today, the development of the computer-aided diagnosis (CAD) method makes it possible for pathologists to diagnose DFU more swiftly and accurately. This has led to a rise in interest in deep learning (DL) approaches based on CAD. In this study, we introduce a novel framework called "DFU_MultiNet," which focuses on the transfer learning approach to classify healthy and ulcer skin images using publicly available repositories. The proposed framework is developed to offer an efficient and robust method for DFU classification that determines the distinction between healthy and ulcerated skin. The proposed approach extracts features from foot samples using three well-known pre-trained CNN models: VGG19, DenseNet201, and NasNetMobile. Finally, these extracted results are merged through a summing layer to create a powerful hybrid network. Through obtaining impressive accuracy (99.06 %), precision (100.00 %), recall (98.18 %), specificity (100.00 %), F1-score (99.08 %), and AUC (99.09 %) the proposed "DFU_MultiNet" framework holds great potential as a diagnostic tool in healthcare and clinical settings.

糖尿病足溃疡(DFU)是糖尿病患者的常见问题,可导致受影响的肢体截肢。现代DFU治疗和诊断方法既昂贵又耗时。如今,计算机辅助诊断(CAD)方法的发展使病理学家能够更迅速、更准确地诊断DFU。这导致了对基于CAD的深度学习(DL)方法的兴趣增加。在这项研究中,我们引入了一个名为“dfu_multiet”的新框架,该框架侧重于使用公开可用的存储库对健康和溃疡皮肤图像进行分类的迁移学习方法。提出的框架是为了提供一种有效和稳健的DFU分类方法,以确定健康皮肤和溃疡皮肤之间的区别。该方法使用三个著名的预训练CNN模型:VGG19、DenseNet201和NasNetMobile从足部样本中提取特征。最后,将这些提取的结果通过求和层进行合并,形成一个强大的混合网络。通过获得令人印象深刻的准确性(99.06%)、精密度(100.00%)、召回率(98.18%)、特异性(100.00%)、f1评分(99.08%)和AUC(99.09%),提出的“dfu_多网”框架在医疗保健和临床环境中作为诊断工具具有巨大的潜力。
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引用次数: 0
Machine learning-based prediction of low-value care for hospitalized patients 基于机器学习的住院患者低价值护理预测
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100115
Andrew J. King , Lu Tang , Billie S. Davis , Sarah M. Preum , Leigh A. Bukowski , John Zimmerman , Jeremy M. Kahn

Objective

Low-value care (i.e., costly health care treatments that provide little or no benefit) is an ongoing problem in United States hospitals. Traditional strategies for reducing low-value care are only moderately successful. Informed by behavioral science principles, we sought to use machine learning to inform a targeted prompting system that suggests preferred alternative treatments at the point of care but before clinicians have made a decision.

Methods

We used intravenous administration of albumin for fluid resuscitation in intensive care unit (ICU) patients as an exemplar of low-value care practice, identified using the electronic health record of a multi-hospital health system. We divided all ICU episodes into 4-h periods and defined a set of relevant clinical features at the period level. We then developed two machine learning models: a single-stage model that directly predicts if a patient will receive albumin in the next period; and a two-stage model that first predicts if any resuscitation fluid will be administered and then predicts albumin only among the patients with a high probability of fluid use.

Results

We examined 87,489 ICU episodes divided into approximately 1.5 million 4-h periods. The area under the receiver operating characteristic curve was 0.86 for both prediction models. The positive predictive value was 0.21 (95% confidence interval: 0.20, 0.23) for the single-stage model and 0.22 (0.20, 0.23) for the two-stage model. Applying either model in a targeted prompting system could prevent 10% of albumin administrations, with an attending physician receiving one prompt every 4.2 days of ICU service.

Conclusion

Prediction of low-value care is feasible and could enable a point-of-care, targeted prompting system that offers suggestions ahead of the moment of need before clinicians have already decided. A two-stage approach does not improve performance but does interject new levers for the calibration of such a system.

目的低价值护理(即费用昂贵但收效甚微或根本没有益处的保健治疗)是美国医院中一个持续存在的问题。减少低价值护理的传统策略只取得了适度的成功。根据行为科学原理,我们试图使用机器学习来通知有针对性的提示系统,该系统可以在临床医生做出决定之前,在护理点建议首选的替代治疗方法。方法:通过多医院卫生系统的电子健康记录,我们将重症监护病房(ICU)患者静脉注射白蛋白用于液体复苏作为低价值护理实践的范例。我们将所有ICU发作分为4小时的周期,并在周期水平上定义了一组相关的临床特征。然后,我们开发了两个机器学习模型:一个是单阶段模型,直接预测患者是否会在下一阶段接受白蛋白治疗;还有一个两阶段模型,首先预测是否需要使用任何复苏液体,然后预测白蛋白仅在高可能性使用液体的患者中使用。结果我们检查了87,489例ICU发作,分为约150万个4小时周期。两种预测模型的受试者工作特征曲线下面积均为0.86。单阶段模型的阳性预测值为0.21(95%置信区间:0.20,0.23),两阶段模型的阳性预测值为0.22(0.20,0.23)。在有针对性的提示系统中应用任何一种模式都可以防止10%的白蛋白给药,主治医生每4.2天在ICU服务中收到一次提示。结论低价值护理的预测是可行的,可以实现一个即时、有针对性的提示系统,在临床医生做出决定之前,在需要的时刻提供建议。两阶段方法并不能提高性能,但确实为这种系统的校准插入了新的杠杆。
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引用次数: 0
Validation in the age of machine learning: A framework for describing validation with examples in transcranial magnetic stimulation and deep brain stimulation 机器学习时代的验证:用经颅磁刺激和深部脑刺激的例子描述验证的框架
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100090
John S.H. Baxter, Pierre Jannin

Medical information processing is a staple of modern medicine with its increasing focus on the collection of numeric medical data such as questionnaires, biophysiological signals, and medical images. Although these modalities have long existed and guided medical practice, the movement towards using algorithms to transform, curate, summarise, and otherwise interact with this data is relatively new. Novel algorithms now form the interface between clinical users and data, extracting information that would otherwise be inaccessible or cumbersome. Recently, machine learning has expanded the capacities of these algorithms, using a priori acquired (and often annotated) datasets to learn a complex computational task. Validation of these techniques is inherently important for determining their safety and efficacy in a particular clinical context. However, methodological considerations such as the definition of reference data and validation procedures can obscure validation issues such as inaccurate reporting, a lack of standardisation, and a variety of biases. The purpose of this paper is to develop a framework for understanding medical information processing algorithms with a focus on validation that is adapted for machine learning approaches as well as traditional ones. This framework is instantiated in two example literature reviews which serve as the starting point for a discussion on how validation can be improved cognisant of machine learning.

医学信息处理是现代医学的一个重要内容,它越来越注重收集数字医学数据,如问卷调查、生物生理信号和医学图像。尽管这些模式长期存在并指导医疗实践,但使用算法转换、整理、总结和以其他方式与这些数据交互的运动相对较新。新的算法现在形成临床用户和数据之间的接口,提取信息,否则将无法访问或繁琐。最近,机器学习扩展了这些算法的能力,使用先验获取(通常是注释)数据集来学习复杂的计算任务。这些技术的验证对于确定其在特定临床环境中的安全性和有效性具有内在的重要性。然而,方法学上的考虑,如参考数据的定义和验证过程,可以掩盖验证问题,如不准确的报告,缺乏标准化,和各种偏差。本文的目的是开发一个框架来理解医学信息处理算法,重点是验证,适用于机器学习方法和传统方法。该框架在两个示例文献综述中实例化,作为讨论如何改进机器学习认知的验证的起点。
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引用次数: 1
Machine learning-based approach to the diagnosis of cardiovascular vascular disease using a combined dataset 基于机器学习的综合数据集心血管疾病诊断方法
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100100
Khandaker Mohammad Mohi Uddin , Rokaiya Ripa , Nilufar Yeasmin , Nitish Biswas , Samrat Kumar Dey

Nowadays, one of the most important illnesses is a heart disease which causes most patients dead. The medical diagnosis of heart disease is quite difficult. This diagnosis is a challenging process that requires accuracy and efficiency. The chance of death will be decreased with early heart disease detection. Because cardiac problems are now a fairly frequent ailment, predicting heart disease has become one of the most difficult medical jobs in recent years. Researchers looked at a variety of closely related traits to discover the most reliable predictors of these conditions. In this study, Machine Learning (ML) techniques are used to identify the presence of cardiac abnormalities. The proposed method predicts the chances of heart disease and classifies patient's risk level by using different ML algorithm techniques such as Decision Tree (DT), Ada-Boost Classifier (AB), Extra trees Classifier (ET), Support vector Machine (SVM), Gradient boost, MLP, extreme gradient boost (XGB), Random Forest (RF), KNN, and LR. Three different datasets are combined to train and test the proposed system. The experimental results show that, when compared to other ML algorithms, the Decision Tree algorithm has the highest accuracy, at 99.16%.

如今,最重要的疾病之一是心脏病,它导致大多数患者死亡。心脏病的医学诊断是相当困难的。这种诊断是一个具有挑战性的过程,需要准确性和效率。早期发现心脏病会降低死亡的机会。由于心脏病现在是一种相当常见的疾病,预测心脏病已成为近年来最困难的医疗工作之一。研究人员研究了各种密切相关的特征,以发现这些疾病最可靠的预测因素。在这项研究中,机器学习(ML)技术用于识别心脏异常的存在。该方法采用决策树(DT)、Ada-Boost分类器(AB)、额外树分类器(ET)、支持向量机(SVM)、梯度增强、MLP、极端梯度增强(XGB)、随机森林(RF)、KNN和LR等不同的ML算法技术,预测心脏病的发生几率并对患者的风险水平进行分类。将三个不同的数据集结合起来训练和测试所提出的系统。实验结果表明,与其他机器学习算法相比,决策树算法的准确率最高,达到99.16%。
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引用次数: 1
Prediction of Alzheimer's disease from magnetic resonance imaging using a convolutional neural network 利用卷积神经网络从磁共振成像预测阿尔茨海默病
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100091
Kevin de Silva, Holger Kunz

Objectives

The primary goal of this study is to examine if a convolutional neural network (CNN) can be applied as a diagnostic tool for predicting Alzheimer's Disease (AD) from magnetic resonance imaging (MRI) using the MIRIAD-dataset (Minimal Interval Resonance Imaging in Alzheimer's Disease) from one single central slice of the brain.

Methods

The MIRIAD dataset contains patients' health records represented by a set of MRI scans of the brain and further diagnostic data. Hyperparameters and configurations of CNNs were optimized to determine the best-performing model. The CNN was implemented in Python with the deep learning library ‘Keras’ using Linux/Ubuntu as the operating system.

Results

This study obtained the following best performance metrics for predicting Alzheimer's Disease from MRI with Matthew's Correlation Coefficient (MCC) of 0.77; accuracy of 0.89; F1-score of 0.89; AUC of 0.92. The computational time for the training of a CNN takes less than 30 sec. s with a GPU (graphics processing unit). The prediction takes less than 1 sec. on a standard PC.

Conclusions

The study suggests that an axial MRI scan can be used to diagnose if a patient has Alzheimer's Disease with an AUC score of 0.92.

本研究的主要目的是研究卷积神经网络(CNN)是否可以作为一种诊断工具,使用来自大脑单个中央切片的miriad数据集(阿尔茨海默病最小间隔磁共振成像)从磁共振成像(MRI)中预测阿尔茨海默病(AD)。方法MIRIAD数据集包含由一组大脑MRI扫描和进一步诊断数据表示的患者健康记录。对cnn的超参数和配置进行优化,以确定性能最佳的模型。CNN是用Python实现的,使用深度学习库Keras,使用Linux/Ubuntu作为操作系统。结果本研究获得了MRI预测阿尔茨海默病的最佳性能指标,马修相关系数(MCC)为0.77;准确度为0.89;f1得分为0.89;AUC为0.92。使用GPU(图形处理单元)训练CNN的计算时间不到30秒。在标准PC上,预测时间不到1秒。结论本研究提示轴向MRI扫描可用于诊断AUC评分为0.92的阿尔茨海默病患者。
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引用次数: 1
Artificial intelligence viewed through the lens of state regulation 从国家监管的角度看人工智能
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100088
Sarvam P. TerKonda , Eric M. Fish

In fulfilling their duty to regulate the practice of medicine, state medical boards face complex regulatory challenges and patient safety concerns in adapting regulations and standards for the provision of medical care where the use of artificial intelligence becomes more prevalent. This article raises preliminary, yet foundational, questions of how artificial intelligence will continue to change the patient experience and the duties of a physician, and calls for increased regulatory attention from state and federal regulators. This article introduces the important role of state medical boards and why those interested in deploying artificial intelligence in clinical settings should be aware of how medical boards approach issues of standard of care and ethics. It also offers suggestions on how regulators may be able to improve collaboration to promote an innovation-friendly regulatory strategy.

国家医学委员会在履行其规范医学实践的职责时,在为使用人工智能变得更加普遍的医疗保健服务调整法规和标准时,面临着复杂的监管挑战和患者安全关切。本文提出了人工智能将如何继续改变患者体验和医生职责的初步问题,并呼吁州和联邦监管机构加强监管。本文介绍了国家医学委员会的重要作用,以及为什么那些对在临床环境中部署人工智能感兴趣的人应该了解医学委员会如何处理护理标准和道德问题。它还就监管机构如何能够改善合作以促进创新友好型监管战略提出了建议。
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引用次数: 0
Artificial Intelligence Improves Readability of Digital Health Records 人工智能提高数字健康记录的可读性
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100121
Peter Vien , Alexander Phu
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引用次数: 0
Predicting health-related quality of life change using natural language processing in thyroid cancer 使用自然语言处理预测甲状腺癌患者与健康相关的生活质量变化
Pub Date : 2023-01-01 DOI: 10.1016/j.ibmed.2023.100097
Ruixue Lian , Vivian Hsiao , Juwon Hwang , Yue Ou , Sarah E. Robbins , Nadine P. Connor , Cameron L. Macdonald , Rebecca S. Sippel , William A. Sethares , David F. Schneider

Background

Patient-reported outcomes (PRO) allow clinicians to measure health-related quality of life (HRQOL) and understand patients’ treatment priorities, but obtaining PRO requires surveys which are not part of routine care. We aimed to develop a preliminary natural language processing (NLP) pipeline to extract HRQOL trajectory based on deep learning models using patient language.

Materials and methods

Our data consisted of transcribed interviews of 100 patients undergoing surgical intervention for low-risk thyroid cancer, paired with HRQOL assessments completed during the same visits. Our outcome measure was HRQOL trajectory measured by the SF-12 physical and mental component scores (PCS and MCS), and average THYCA-QoL score.

We constructed an NLP pipeline based on BERT, a modern deep language model that captures context semantics, to predict HRQOL trajectory as measured by the above endpoints. We compared this to baseline models using logistic regression and support vector machines trained on bag-of-words representations of transcripts obtained using Linguistic Inquiry and Word Count (LIWC). Finally, given the modest dataset size, we implemented two data augmentation methods to improve performance: first by generating synthetic samples via GPT-2, and second by changing the representation of available data via sequence-by-sequence pairing, which is a novel approach.

Results

A BERT-based deep learning model, with GPT-2 synthetic sample augmentation, demonstrated an area-under-curve of 76.3% in the classification of HRQOL accuracy as measured by PCS, compared to the baseline logistic regression and bag-of-words model, which had an AUC of 59.9%. The sequence-by-sequence pairing method for augmentation had an AUC of 71.2% when used with the BERT model.

Conclusions

NLP methods show promise in extracting PRO from unstructured narrative data, and in the future may aid in assessing and forecasting patients’ HRQOL in response to medical treatments. Our experiments with optimization methods suggest larger amounts of novel data would further improve performance of the classification model.

患者报告结果(PRO)允许临床医生测量健康相关生活质量(HRQOL)并了解患者的治疗优先级,但获得PRO需要调查,这不是常规护理的一部分。我们的目标是开发一个初步的自然语言处理(NLP)管道,以基于患者语言的深度学习模型提取HRQOL轨迹。材料和方法我们的数据包括对100名接受低风险甲状腺癌手术干预的患者的转录访谈,并在同一次访问期间完成HRQOL评估。我们的结局测量指标是HRQOL轨迹,由SF-12身心成分评分(PCS和MCS)和平均THYCA-QoL评分测量。我们基于BERT构建了一个NLP管道,BERT是一种捕获上下文语义的现代深度语言模型,通过上述端点来预测HRQOL轨迹。我们将其与使用逻辑回归和支持向量机训练的基线模型进行了比较,这些模型是使用语言查询和单词计数(LIWC)获得的文本的词袋表示。最后,考虑到适度的数据集大小,我们实现了两种数据增强方法来提高性能:首先通过GPT-2生成合成样本,其次通过逐个序列配对改变可用数据的表示,这是一种新颖的方法。结果基于bert的深度学习模型在GPT-2合成样本增强的情况下,对HRQOL的分类准确率为76.3%,而基线逻辑回归和词袋模型的AUC为59.9%。与BERT模型一起使用时,序列对方法的AUC为71.2%。结论snlp方法在从非结构化叙事数据中提取PRO方面具有良好的应用前景,可用于评估和预测患者对药物治疗的HRQOL。我们对优化方法的实验表明,大量的新数据将进一步提高分类模型的性能。
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引用次数: 0
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Intelligence-based medicine
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