In the bicyclic title compound, C33H29ClN2O2, the two piperidine rings of the diazabicylco moiety adopt distorted-chair conformations.
In the title compound, C33H29ClN2O2, the two piperidine rings of the diazabicyclo moiety adopt distorted-chair conformations. Intermolecular C—H⋯π interactions are mainly responsible for the crystal packing. The intermolecular interactions were quantified and analysed using Hirshfeld surface analysis, revealing that H⋯H interactions contribute most to the crystal packing (52.3%). The molecular structure was further optimized by density functional theory (DFT) at the B3LYP/6–31 G(d,p) level and is compared with the experimentally determined molecular structure in the solid state.
{"title":"Crystal structure, Hirshfeld surface analysis, DFT and the molecular docking studies of 3-(2-chloroacetyl)-2,4,6,8-tetraphenyl-3,7-diazabicyclo[3.3.1]nonan-9-one","authors":"Sivagnanam Divyabharathi , Anjalai Ramachandran Karthiga , Rajans Reshwen Shalo , Krishnan Rajeswari , Thankakan Vidhyasagar , Sivashanmugam Selvanayagam","doi":"10.1107/S2056989024008302","DOIUrl":"10.1107/S2056989024008302","url":null,"abstract":"<div><p>In the bicyclic title compound, C<sub>33</sub>H<sub>29</sub>ClN<sub>2</sub>O<sub>2</sub>, the two piperidine rings of the diazabicylco moiety adopt distorted-chair conformations.</p></div><div><p>In the title compound, C<sub>33</sub>H<sub>29</sub>ClN<sub>2</sub>O<sub>2</sub>, the two piperidine rings of the diazabicyclo moiety adopt distorted-chair conformations. Intermolecular C—H⋯π interactions are mainly responsible for the crystal packing. The intermolecular interactions were quantified and analysed using Hirshfeld surface analysis, revealing that H⋯H interactions contribute most to the crystal packing (52.3%). The molecular structure was further optimized by density functional theory (DFT) at the B3LYP/6–31 G(d,p) level and is compared with the experimentally determined molecular structure in the solid state.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 9","pages":"Pages 981-985"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142150492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01DOI: 10.1107/S2056989024009095
Daniel Upmann , Dirk Bockfeld , Peter G. Jones , Eliza Târcoveanu
<div><div>The ligands at the Au<sup>I</sup> atoms are antiperiplanar to each other across the S⋯S vectors. Residues are linked by various contacts of the types C—H⋯<em>X</em>, <em>E</em>⋯<em>X</em> and Br⋯Br.</div></div><div><div>During our studies of the oxidation of gold(I) complexes of trialkylphosphane chalcogenides, general formula <em>R</em><sup>1</sup><em>R</em><sup>2</sup><em>R</em><sup>3</sup>P<em>E</em>Au<em>X</em>, (<em>R</em> = <em>tert</em>-butyl or isopropyl, <em>E</em> = S or Se, <em>X</em> = Cl or Br) with PhICl<sub>2</sub> or elemental bromine, we have isolated a set of seven mixed-valence by-products, the bis(trialkylphosphane chalcogenido)gold(I) tetrahalogenidoaurates(III) [(<em>R</em><sup>1</sup><em>R</em><sup>2</sup><em>R</em><sup>3</sup>P<em>E</em>)<sub>2</sub>Au]<sup>+</sup>[Au<em>X</em><sub>4</sub>]<sup>−</sup>. These correspond to the addition of one halogen atom per gold atom of the Au<sup>I</sup> precursor. Compound <strong>1</strong>, bis(triisopropylphosphane sulfide)gold(I) tetrachloridoaurate(III), [Au(C<sub>9</sub>H<sub>21</sub>PS)<sub>2</sub>][AuCl<sub>4</sub>] or [(<sup>i</sup>Pr<sub>3</sub>PS)<sub>2</sub>Au][AuCl<sub>4</sub>], crystallizes in space group <em>P</em>2<sub>1</sub>/<em>n</em> with <em>Z</em> = 4; the gold(I) atoms of the two cations lie on twofold rotation axes, and the gold(III) atoms of the two anions lie on inversion centres. Compound <strong>2</strong>, bis(<em>tert</em>-butyldiisopropylphosphane sulfide)gold(I) tetrachloridoaurate(III), [Au(C<sub>10</sub>H<sub>23</sub>PS)<sub>2</sub>][AuCl<sub>4</sub>] or [(<sup>t</sup>Bu<sup>i</sup>Pr<sub>2</sub>PS)<sub>2</sub>Au][AuCl<sub>4</sub>], crystallizes in space group <em>P</em>1 with <em>Z</em> = 4; the asymmetric unit contains two cations and two anions with no imposed symmetry. A least-squares fit of the two cations gave an r.m.s. deviation of 0.19 Å. Compound <strong>3</strong>, bis(tri-<em>tert</em>-butylphosphane sulfide)gold(I) tetrachloridoaurate(III), [Au(C<sub>12</sub>H<sub>27</sub>PS)<sub>2</sub>][AuCl<sub>4</sub>] or [(<sup>t</sup>Bu<sub>3</sub>PS)<sub>2</sub>Au][AuCl<sub>4</sub>], crystallizes in space group <em>P</em>1 with <em>Z</em> = 1; both gold atoms lie on inversion centres. Compound <strong>4a</strong>, bis(<em>tert</em>-butyldiisopropylphosphane sulfide)gold(I) tetrabromidoaurate(III), [Au(C<sub>10</sub>H<sub>23</sub>PS)<sub>2</sub>][AuBr<sub>4</sub>] or [(<sup>t</sup>Bu<sup>i</sup>Pr<sub>2</sub>PS)<sub>2</sub>Au][AuBr<sub>4</sub>], crystallizes in space group <em>P</em>2<sub>1</sub>/<em>c</em> with <em>Z</em> = 4; the cation lies on a general position, whereas the gold(III) atoms of the two anions lie on inversion centres. Compound <strong>4b</strong>, bis(<em>tert</em>-butyldiisopropylphosphane selenide)gold(I) tetrabromidoaurate(III), [Au(C<sub>10</sub>H<sub>23</sub>PSe)<sub>2</sub>][AuBr<sub>4</sub>] or [(<sup>t</sup>Bu<sup>i</sup>Pr<sub>2</sub>PSe)<sub>2</sub>Au][AuBr<sub>4</sub>], i
在研究通式为 R 1 R 2 R 3PEAuX 的三烷基膦烷基瑀金(I)络合物(R = 叔丁基或异丙基,E = S 或 Se)与 PhICl2 或元素溴的氧化反应过程中,我们分离出了一组七种混合价副产物,即双(三烷基膦烷基瑀金)络合物、X = Cl 或 Br)与 PhICl2 或元素溴反应,我们分离出了一组七价混合副产物,即双(三烷基膦酰基)金(I)四卤代金酸盐(III)[(R 1 R 2 R 3PE)2Au]+[AuX 4]-。这与 AuI 前体中每个金原子添加一个卤原子有关。化合物 1,双(三异丙基硫化膦)-金(I)四氯化物-金酸酯(III),[Au(C9H21PS)2][AuCl4] 或 [( i Pr3PS)2Au][AuCl4] 结晶于空间群 P21/n,Z = 4;两个阳离子的金(I)原子位于两倍旋转轴上,两个阴离子的金(III)原子位于反转中心。化合物 2,即双(叔丁基-二异丙基-硫化膦)-金(I)四氯化物-牛磺酸(III),[Au(C10H23PS)2][AuCl4] 或 [( t Bu i Pr2PS)2Au][AuCl4] 结晶于空间群 P1,Z = 4;不对称单元包含两个阳离子和两个阴离子,没有外加对称性。两个阳离子的最小二乘法拟合得出的 r.m.s. 偏差为 0.19 Å。化合物 3,双(三叔丁基硫化膦)-金(I)四氯金酸(III),[Au(C12H27PS)2][AuCl4] 或 [( t Bu3PS)2Au][AuCl4] 结晶于空间群 P1,Z = 1;两个金原子都位于反转中心。化合物 4a,双(叔丁基-二异丙基-硫化膦)-金(I)四溴-月桂酸(III),[Au(C10H23PS)2][AuBr4] 或 [( t Bu i Pr2PS)2Au][AuBr4] 结晶于空间群 P21/c,Z = 4;阳离子位于一般位置,而两个阴离子的金(III)原子位于反转中心。化合物 4b,即双-(叔丁基-二异丙基-膦硒化物)金(I)四溴-牛磺酸盐(III),[Au(C10H23PSe)2][AuBr4] 或 [( t Bu i Pr2PSe)2Au][AuBr4] 与 4a 是同种异构体。化合物 5a,双-(三叔丁基硫化膦)-金(I)四溴-牛磺酸盐(III),[Au(C12H27PS)2][AuBr4] 或 [( t Bu3PS)2Au][AuBr4] 与化合物 4a 同型。化合物 5a,双-(三叔丁基硫化膦)-金(I)四溴-牛磺酸盐(III),[Au(C12H27PS)2][AuBr4] 或 [( t Bu3PS)2Au][AuBr4] 结晶于空间群 P1,Z = 1;两个金原子都位于反转中心。化合物 5b,即双(三叔丁基膦硒)金(I)四溴-牛磺酸盐(III),[Au(C12H27PSe)2][AuBr4] 或 [( t Bu3PSe)2Au][AuBr4] 与 5a 同型。所有 AuI 原子均为线性配位,所有 AuIII 原子均呈现方形平面配位环境。AuI 原子上的配体在 S⋯S 轴上相互反全平面。分子内存在一些短的 H⋯Au 和 H⋯E 接触。平均键长(埃)为P-S = 2.0322,P-Se = 2.1933,S-Au = 2.2915,Se-Au = 2.4037。1 的复杂三维堆积涉及两个短的 C-Hmethine⋯Cl 接触(以及一些稍长的接触)。就 2 而言,四个 C-Hmethine⋯Cl 相互作用产生了平行于 c 轴的 "之 "字形残基链。此外,还可以观察到一个 S⋯Cl 接触点,该接触点可被称为 "缩醛键"。3 的堆积是三维的,但可以分解成两层结构,每层结构都涉及一个 S⋯Cl 接触点和一个 H⋯Cl 接触点。对于溴化衍生物 4a/b 和 5a/b,阴离子的松散结合构成了堆积模式的一部分。对于所有这四种化合物来说,它们都与 E⋯Br 触点结合在一起,形成平行于 ab 平面的层。
{"title":"Crystal structures of seven mixed-valence gold compounds of the form [(R1R2R3PE)2AuI]+[AuIIIX4]− (R = tert-butyl or isopropyl, E = S or Se, and X = Cl or Br)","authors":"Daniel Upmann , Dirk Bockfeld , Peter G. Jones , Eliza Târcoveanu","doi":"10.1107/S2056989024009095","DOIUrl":"10.1107/S2056989024009095","url":null,"abstract":"<div><div>The ligands at the Au<sup>I</sup> atoms are antiperiplanar to each other across the S⋯S vectors. Residues are linked by various contacts of the types C—H⋯<em>X</em>, <em>E</em>⋯<em>X</em> and Br⋯Br.</div></div><div><div>During our studies of the oxidation of gold(I) complexes of trialkylphosphane chalcogenides, general formula <em>R</em><sup>1</sup><em>R</em><sup>2</sup><em>R</em><sup>3</sup>P<em>E</em>Au<em>X</em>, (<em>R</em> = <em>tert</em>-butyl or isopropyl, <em>E</em> = S or Se, <em>X</em> = Cl or Br) with PhICl<sub>2</sub> or elemental bromine, we have isolated a set of seven mixed-valence by-products, the bis(trialkylphosphane chalcogenido)gold(I) tetrahalogenidoaurates(III) [(<em>R</em><sup>1</sup><em>R</em><sup>2</sup><em>R</em><sup>3</sup>P<em>E</em>)<sub>2</sub>Au]<sup>+</sup>[Au<em>X</em><sub>4</sub>]<sup>−</sup>. These correspond to the addition of one halogen atom per gold atom of the Au<sup>I</sup> precursor. Compound <strong>1</strong>, bis(triisopropylphosphane sulfide)gold(I) tetrachloridoaurate(III), [Au(C<sub>9</sub>H<sub>21</sub>PS)<sub>2</sub>][AuCl<sub>4</sub>] or [(<sup>i</sup>Pr<sub>3</sub>PS)<sub>2</sub>Au][AuCl<sub>4</sub>], crystallizes in space group <em>P</em>2<sub>1</sub>/<em>n</em> with <em>Z</em> = 4; the gold(I) atoms of the two cations lie on twofold rotation axes, and the gold(III) atoms of the two anions lie on inversion centres. Compound <strong>2</strong>, bis(<em>tert</em>-butyldiisopropylphosphane sulfide)gold(I) tetrachloridoaurate(III), [Au(C<sub>10</sub>H<sub>23</sub>PS)<sub>2</sub>][AuCl<sub>4</sub>] or [(<sup>t</sup>Bu<sup>i</sup>Pr<sub>2</sub>PS)<sub>2</sub>Au][AuCl<sub>4</sub>], crystallizes in space group <em>P</em>1 with <em>Z</em> = 4; the asymmetric unit contains two cations and two anions with no imposed symmetry. A least-squares fit of the two cations gave an r.m.s. deviation of 0.19 Å. Compound <strong>3</strong>, bis(tri-<em>tert</em>-butylphosphane sulfide)gold(I) tetrachloridoaurate(III), [Au(C<sub>12</sub>H<sub>27</sub>PS)<sub>2</sub>][AuCl<sub>4</sub>] or [(<sup>t</sup>Bu<sub>3</sub>PS)<sub>2</sub>Au][AuCl<sub>4</sub>], crystallizes in space group <em>P</em>1 with <em>Z</em> = 1; both gold atoms lie on inversion centres. Compound <strong>4a</strong>, bis(<em>tert</em>-butyldiisopropylphosphane sulfide)gold(I) tetrabromidoaurate(III), [Au(C<sub>10</sub>H<sub>23</sub>PS)<sub>2</sub>][AuBr<sub>4</sub>] or [(<sup>t</sup>Bu<sup>i</sup>Pr<sub>2</sub>PS)<sub>2</sub>Au][AuBr<sub>4</sub>], crystallizes in space group <em>P</em>2<sub>1</sub>/<em>c</em> with <em>Z</em> = 4; the cation lies on a general position, whereas the gold(III) atoms of the two anions lie on inversion centres. Compound <strong>4b</strong>, bis(<em>tert</em>-butyldiisopropylphosphane selenide)gold(I) tetrabromidoaurate(III), [Au(C<sub>10</sub>H<sub>23</sub>PSe)<sub>2</sub>][AuBr<sub>4</sub>] or [(<sup>t</sup>Bu<sup>i</sup>Pr<sub>2</sub>PSe)<sub>2</sub>Au][AuBr<sub>4</sub>], i","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 10","pages":"Pages 1087-1096"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11451493/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142379775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In the title molecule, the benzimidazole moiety is oriented almost perpendicular to the triazole ring. In the crystal, C—H⋯O hydrogen bonds link the molecules into a network structure.
The benzimidazole moiety in the title molecule, C19H25N5O, is almost planar and oriented nearly perpendicular to the triazole ring. In the crystal, C—H⋯O hydrogen bonds link the molecules into a network structure. There are no π–π interactions present but two weak C—H⋯π(ring) interactions are observed. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (62.0%), H⋯C/C⋯H (16.1%), H⋯N/N⋯H (13.7%) and H⋯O/O⋯H (7.5%) interactions. Evaluation of the electrostatic, dispersion and total energy frameworks indicate that the stabilization is dominated via the dispersion energy contributions in the title compound.
{"title":"Crystal structure, Hirshfeld surface analysis, and calculations of intermolecular interaction energies and energy frameworks of 1-[(1-hexyl-1H-1,2,3-triazol-4-yl)methyl]-3-(1-methylethenyl)-benzimidazol-2-one","authors":"Zakaria El Atrassi , Zakaria Benzekri , Olivier Blacque , Tuncer Hökelek , Ahmed Mazzah , Hassan Cherkaoui , Nada Kheira Sebbar","doi":"10.1107/S2056989024008703","DOIUrl":"10.1107/S2056989024008703","url":null,"abstract":"<div><div>In the title molecule, the benzimidazole moiety is oriented almost perpendicular to the triazole ring. In the crystal, C—H⋯O hydrogen bonds link the molecules into a network structure.</div></div><div><div>The benzimidazole moiety in the title molecule, C<sub>19</sub>H<sub>25</sub>N<sub>5</sub>O, is almost planar and oriented nearly perpendicular to the triazole ring. In the crystal, C—H⋯O hydrogen bonds link the molecules into a network structure. There are no π–π interactions present but two weak C—H⋯π(ring) interactions are observed. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (62.0%), H⋯C/C⋯H (16.1%), H⋯N/N⋯H (13.7%) and H⋯O/O⋯H (7.5%) interactions. Evaluation of the electrostatic, dispersion and total energy frameworks indicate that the stabilization is dominated <em>via</em> the dispersion energy contributions in the title compound.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 10","pages":"Pages 1075-1080"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11451489/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142383291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The asymmetric unit of the title salt comprises two 1,3-dihydro-2H-benzimidazol-2-iminium cations and two 2-hydroxy-5-sulfobenzoate anions (Z′ = 2). In the crystal, the molecules interact through N—H⋯O, O—H⋯O hydrogen bonds and C—O⋯π contacts. The hydrogen-bonding interactions lead to the formation of layers parallel to (
01).
The asymmetric unit of the title salt, C7H8N3+·C7H5O6S−, comprises two 1,3-dihydro-2H-benzimidazol-2-iminium cations and two 2-hydroxy-5-sulfobenzoate anions (Z′ = 2). In the crystal, the molecules interact through N—H⋯O, O—H⋯O hydrogen bonds and C—O⋯π contacts. The hydrogen-bonding interactions lead to the formation of layers parallel to (
01). Hirshfeld surface analysis revealed that H⋯H contacts contribute to most of the crystal packing with 38.9%, followed by H⋯O contacts with 36.2%.
{"title":"Synthesis, crystal structure, and Hirshfeld surface analysis of 1,3-dihydro-2H-benzimidazol-2-iminium 3-carboxy-4-hydroxybenzenesulfonate","authors":"Salmon Mukhammadiev , Sarvar Rajabov , Akmaljon Tojiboev , Jamshid Ashurov , Sardor Murodov , Shahlo Daminova","doi":"10.1107/S2056989024008557","DOIUrl":"10.1107/S2056989024008557","url":null,"abstract":"<div><div>The asymmetric unit of the title salt comprises two 1,3-dihydro-2<em>H</em>-benzimidazol-2-iminium cations and two 2-hydroxy-5-sulfobenzoate anions (<em>Z</em>′ = 2). In the crystal, the molecules interact through N—H⋯O, O—H⋯O hydrogen bonds and C—O⋯π contacts. The hydrogen-bonding interactions lead to the formation of layers parallel to (<blockquote><div><figure><img></figure></div></blockquote>01).</div></div><div><div>The asymmetric unit of the title salt, C<sub>7</sub>H<sub>8</sub>N<sub>3</sub><sup>+</sup>·C<sub>7</sub>H<sub>5</sub>O<sub>6</sub>S<sup>−</sup>, comprises two 1,3-dihydro-2<em>H</em>-benzimidazol-2-iminium cations and two 2-hydroxy-5-sulfobenzoate anions (<em>Z</em>′ = 2). In the crystal, the molecules interact through N—H⋯O, O—H⋯O hydrogen bonds and C—O⋯π contacts. The hydrogen-bonding interactions lead to the formation of layers parallel to (<blockquote><div><figure><img></figure></div></blockquote>01). Hirshfeld surface analysis revealed that H⋯H contacts contribute to most of the crystal packing with 38.9%, followed by H⋯O contacts with 36.2%.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 10","pages":"Pages 999-1002"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11451492/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142379875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01DOI: 10.1107/S2056989024007345
Abderrazzak El Moutaouakil Ala Allah , Benson M. Kariuki , Abdulsalam Alsubari , Ahlam I. Al-Sulami , Basmah H. Allehyani , Wafa O. Alsulami , Joel T. Mague , Youssef Ramli
The dihydroimidazole ring in the title molecule is slightly distorted and the lone pair on the tri-coordinate nitrogen atom is involved in intra-ring π bonding. In the crystal, C—H⋯O hydrogen bonds form inversion dimers, which are connected along the a- and c-axis directions by additional C—H⋯O hydrogen bonds, forming layers parallel to the ac plane.
The dihydroimidazole ring in the title molecule, C20H20N2O3S, is slightly distorted and the lone pair on the tri-coordinate nitrogen atom is involved in intra-ring π bonding. The methylsulfanyl substituent lies nearly in the plane of the five-membered ring while the ester substituent is rotated well out of that plane. In the crystal, C—H⋯O hydrogen bonds form inversion dimers, which are connected along the a- and c-axis directions by additional C—H⋯O hydrogen bonds, forming layers parallel to the ac plane. The major contributors to the Hirshfeld surface are C⋯H/H⋯C, O⋯H/H⋯O and S⋯H/H⋯S contacts at 20.5%, 14.7% and 4.9%, respectively.
标题分子 C20H20N2O3S 中的二氢咪唑环略微变形,三配位氮原子上的孤对参与了环内 π 键合。甲硫基取代基几乎位于五元环的平面内,而酯类取代基则在该平面外旋转。在晶体中,C-H......O 氢键形成反转二聚体,这些二聚体通过额外的 C-H...O 氢键沿 a 轴和 c 轴方向连接,形成平行于 ac 平面的层。Hirshfeld 表面的主要成分是 C...H/H...C、O...H/H...O 和 S...H/H...S 接触,分别占 20.5%、14.7% 和 4.9%。
{"title":"Synthesis, crystal structure and Hirshfeld surface of ethyl 2-[2-(methylsulfanyl)-5-oxo-4,4-diphenyl-4,5-dihydro-1H-imidazol-1-yl]acetate (thiophenytoin derivative)","authors":"Abderrazzak El Moutaouakil Ala Allah , Benson M. Kariuki , Abdulsalam Alsubari , Ahlam I. Al-Sulami , Basmah H. Allehyani , Wafa O. Alsulami , Joel T. Mague , Youssef Ramli","doi":"10.1107/S2056989024007345","DOIUrl":"10.1107/S2056989024007345","url":null,"abstract":"<div><p>The dihydroimidazole ring in the title molecule is slightly distorted and the lone pair on the tri-coordinate nitrogen atom is involved in intra-ring π bonding. In the crystal, C—H⋯O hydrogen bonds form inversion dimers, which are connected along the <em>a</em>- and <em>c-</em>axis directions by additional C—H⋯O hydrogen bonds, forming layers parallel to the <em>ac</em> plane.</p></div><div><p>The dihydroimidazole ring in the title molecule, C<sub>20</sub>H<sub>20</sub>N<sub>2</sub>O<sub>3</sub>S, is slightly distorted and the lone pair on the tri-coordinate nitrogen atom is involved in intra-ring π bonding. The methylsulfanyl substituent lies nearly in the plane of the five-membered ring while the ester substituent is rotated well out of that plane. In the crystal, C—H⋯O hydrogen bonds form inversion dimers, which are connected along the <em>a</em>- and <em>c-</em>axis directions by additional C—H⋯O hydrogen bonds, forming layers parallel to the <em>ac</em> plane. The major contributors to the Hirshfeld surface are C⋯H/H⋯C, O⋯H/H⋯O and S⋯H/H⋯S contacts at 20.5%, 14.7% and 4.9%, respectively.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 9","pages":"Pages 926-930"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141922179","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01DOI: 10.1107/S2056989024008144
Anastasia A. Pronina , Alexandra G. Kutasevich , Mikhail S. Grigoriev , Khudayar I. Hasanov , Nurlana D. Sadikhova , Tahir A. Javadzade , Mehmet Akkurt , Ajaya Bhattarai
In the crystal, molecules are linked by intermolecular N—H⋯O, C—H⋯O and C—H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, pairs of molecules along the c axis are connected by C—H⋯π interactions.
This study presents the synthesis, characterization and Hirshfeld surface analysis of 1-[6-bromo-2-(3-bromophenyl)-1,2,3,4-tetrahydroquinolin-4-yl]pyrrolidin-2-one, C19H18Br2N2O. In the title compound, the pyrrolidine ring adopts a distorted envelope configuration. In the crystal, molecules are linked by intermolecular N—H⋯O, C—H⋯O and C—H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, pairs of molecules along the c axis are connected by C—H⋯π interactions. According to a Hirshfeld surface study, H⋯H (36.9%), Br⋯H/H⋯Br (28.2%) and C⋯H/H⋯C (24.3%) interactions are the most significant contributors to the crystal packing.
{"title":"Crystal structure and Hirshfeld surface analysis of 1-[6-bromo-2-(3-bromophenyl)-1,2,3,4-tetrahydroquinolin-4-yl]pyrrolidin-2-one","authors":"Anastasia A. Pronina , Alexandra G. Kutasevich , Mikhail S. Grigoriev , Khudayar I. Hasanov , Nurlana D. Sadikhova , Tahir A. Javadzade , Mehmet Akkurt , Ajaya Bhattarai","doi":"10.1107/S2056989024008144","DOIUrl":"10.1107/S2056989024008144","url":null,"abstract":"<div><p>In the crystal, molecules are linked by intermolecular N—H⋯O, C—H⋯O and C—H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, pairs of molecules along the <em>c</em> axis are connected by C—H⋯π interactions.</p></div><div><p>This study presents the synthesis, characterization and Hirshfeld surface analysis of 1-[6-bromo-2-(3-bromophenyl)-1,2,3,4-tetrahydroquinolin-4-yl]pyrrolidin-2-one, C<sub>19</sub>H<sub>18</sub>Br<sub>2</sub>N<sub>2</sub>O. In the title compound, the pyrrolidine ring adopts a distorted envelope configuration. In the crystal, molecules are linked by intermolecular N—H⋯O, C—H⋯O and C—H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, pairs of molecules along the <em>c</em> axis are connected by C—H⋯π interactions. According to a Hirshfeld surface study, H⋯H (36.9%), Br⋯H/H⋯Br (28.2%) and C⋯H/H⋯C (24.3%) interactions are the most significant contributors to the crystal packing.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 9","pages":"Pages 967-972"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142150489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01DOI: 10.1107/S2056989024007400
Natalia Röwekamp-Krugley , Hans Reuter
The title compound represents a ionic mixed-valent tin(II)–tin(IV) compound with the bivalent tin atom as central atom of the cation and the tetravalent tin atom as central atom of the anion. Regarding the first and second coordination sphere, the bivalent tin atom is fourfold, seesaw and fivefold, trapezoid–pyramidal coordinated while the tetravalent tin atom exhibits an octahedral coordination.
In the title compound, bis[aqua(2,2′-bipyridine)fluoridotin(II)] hexafluoridotin(IV), [SnF(C10H8N2)(H2O)]2[SnF6], an ionic mixed-valent tin(II)–tin(IV) compound, the bivalent tin atom is the center atom of the cation and the tetravalent tin atom is the center atom of the anion. With respect to the first coordination sphere, the cation is monomeric, with the tin(II) atom having a fourfold seesaw coordination with a fluorine atom in an equatorial position, a water molecule in an axial position and the two nitrogen atoms of the chelating 2,2′-bipyridine ligand in the remaining axial and equatorial positions. The bond lengths and angles of this hypervalent first coordination sphere are described by 2c–2e and 3c–4e bonds, respectively, all of which are based on the orthogonal 5p orbitals of the tin atom. In the second coordination sphere, which is based on an additional, very long tin–fluorine bond that leads to dimerization of the cation, the tin atom is trapezoidal–pyramidally coordinated. The tetravalent tin atom of the centrosymmetric anion has an octahedral coordination. The differences in its tin–fluorine bond lengths are attributed to hydrogen bonding, as the two of the four fluorine atoms are each involved in two hydrogen bonds, linking anions and cations together to form strands.
{"title":"[SnF(bipy)(H2O)]2[SnF6], a mixed-valent inorganic tin(II)–tin(IV) compound","authors":"Natalia Röwekamp-Krugley , Hans Reuter","doi":"10.1107/S2056989024007400","DOIUrl":"10.1107/S2056989024007400","url":null,"abstract":"<div><p>The title compound represents a ionic mixed-valent tin(II)–tin(IV) compound with the bivalent tin atom as central atom of the cation and the tetravalent tin atom as central atom of the anion. Regarding the first and second coordination sphere, the bivalent tin atom is fourfold, seesaw and fivefold, trapezoid–pyramidal coordinated while the tetravalent tin atom exhibits an octahedral coordination.</p></div><div><p>In the title compound, bis[aqua(2,2′-bipyridine)fluoridotin(II)] hexafluoridotin(IV), [SnF(C<sub>10</sub>H<sub>8</sub>N<sub>2</sub>)(H<sub>2</sub>O)]<sub>2</sub>[SnF<sub>6</sub>], an ionic mixed-valent tin(II)–tin(IV) compound, the bivalent tin atom is the center atom of the cation and the tetravalent tin atom is the center atom of the anion. With respect to the first coordination sphere, the cation is monomeric, with the tin(II) atom having a fourfold seesaw coordination with a fluorine atom in an equatorial position, a water molecule in an axial position and the two nitrogen atoms of the chelating 2,2′-bipyridine ligand in the remaining axial and equatorial positions. The bond lengths and angles of this hypervalent first coordination sphere are described by 2<em>c</em>–2<em>e</em> and 3<em>c</em>–4<em>e</em> bonds, respectively, all of which are based on the orthogonal 5<em>p</em> orbitals of the tin atom. In the second coordination sphere, which is based on an additional, very long tin–fluorine bond that leads to dimerization of the cation, the tin atom is trapezoidal–pyramidally coordinated. The tetravalent tin atom of the centrosymmetric anion has an octahedral coordination. The differences in its tin–fluorine bond lengths are attributed to hydrogen bonding, as the two of the four fluorine atoms are each involved in two hydrogen bonds, linking anions and cations together to form strands.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 9","pages":"Pages 921-925"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142150082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01DOI: 10.1107/S2056989024007801
Viktoriya V. Dyakonenko , Dmytro M. Khomenko , Roman O. Doroshchuk , Ganna V. Ivanova , Rostyslav D. Lampeka
The crystal structure of mononuclear dichloridopalladium(II) complex with 2-(3-cyclopentyl-1,2,4-triazol-5-yl)pyridine is reported and discussed.
This study presents the synthesis, characterization and Hirshfeld surface analysis of the title mononuclear complex, [PdCl2(C12H14N4)]·C3H7NO. The compound crystalizes in the P21/c space group of the monoclinic system. The asymmetric unit contains one neutral complex Pd(HLc-Pe)Cl2 [HLc-Pe is 2-(3-cyclopentyl-1,2,4-triazol-5-yl)pyridine] and one molecule of DMF as a solvate. The Pd atom has a square-planar coordination. In the crystal, molecules are linked by intermolecular N—H⋯O and C—H⋯N hydrogen bonds, forming layers parallel to the bc plane. A Hirshfeld surface analysis showed that the H⋯H contacts dominate the crystal packing with a contribution of 41.4%. The contribution of the N⋯H/H⋯N and H⋯O/O⋯H interactions is somewhat smaller, amounting to 12.4% and 5%, respectively.
{"title":"Crystal structure and Hirshfeld surface analysis of dichlorido[2-(3-cyclopentyl-1,2,4-triazol-5-yl-κN4)pyridine-κN]palladium(II) dimethylformamide monosolvate","authors":"Viktoriya V. Dyakonenko , Dmytro M. Khomenko , Roman O. Doroshchuk , Ganna V. Ivanova , Rostyslav D. Lampeka","doi":"10.1107/S2056989024007801","DOIUrl":"10.1107/S2056989024007801","url":null,"abstract":"<div><p>The crystal structure of mononuclear dichloridopalladium(II) complex with 2-(3-cyclopentyl-1,2,4-triazol-5-yl)pyridine is reported and discussed.</p></div><div><p>This study presents the synthesis, characterization and Hirshfeld surface analysis of the title mononuclear complex, [PdCl<sub>2</sub>(C<sub>12</sub>H<sub>14</sub>N<sub>4</sub>)]·C<sub>3</sub>H<sub>7</sub>NO. The compound crystalizes in the <em>P</em>2<sub>1</sub>/<em>c</em> space group of the monoclinic system. The asymmetric unit contains one neutral complex Pd(H<em>L</em><sup>c-Pe</sup>)Cl<sub>2</sub> [H<em>L</em><sup>c-Pe</sup> is 2-(3-cyclopentyl-1,2,4-triazol-5-yl)pyridine] and one molecule of DMF as a solvate. The Pd atom has a square-planar coordination. In the crystal, molecules are linked by intermolecular N—H⋯O and C—H⋯N hydrogen bonds, forming layers parallel to the <em>bc</em> plane. A Hirshfeld surface analysis showed that the H⋯H contacts dominate the crystal packing with a contribution of 41.4%. The contribution of the N⋯H/H⋯N and H⋯O/O⋯H interactions is somewhat smaller, amounting to 12.4% and 5%, respectively.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 9","pages":"Pages 956-960"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142150085","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01DOI: 10.1107/S2056989024008892
Dharani Albert A. M. , Achyuta Nagaraj , Kanagasabai Somarathinam , Pavunkumar Vinayagam , Mohanakrishnan Arasambattu K. , Gugan Kothandan
The crystal structure of the title compound C20H17NO2S features hydrogen-bonding and C—H⋯π. Docking studies show that it has a strong binding affinity with EGFR kinase, indicating its potential as a promising candidate for targeted lung cancer therapy.
The crystal structure of the title compound C20H17NO2S features hydrogen-bonding and C—H⋯π interactions. Hirshfeld surface analysis revealed that H⋯H, C⋯H/H⋯C and O⋯H/H⋯O interactions make a major contribution to the crystal packing. Docking studies were carried out to determine the binding affinity and interaction profile of the title compound with EGFR kinase, a member of the ErbB family of receptor tyrosine kinases, which is crucial for processes such as cell proliferation and differentiation. The title compound shows a strong binding affinity with EGFR kinase, with the most favourable conformation having a binding energy of −8.27 kcal mol−1 and a predicted IC50 of 870.34 nM, indicating its potential as a promising candidate for targeted lung cancer therapy.
{"title":"Crystal structure and Hirshfeld surface analysis of (E)-N-(2-styrylphenyl)benzenesulfonamide","authors":"Dharani Albert A. M. , Achyuta Nagaraj , Kanagasabai Somarathinam , Pavunkumar Vinayagam , Mohanakrishnan Arasambattu K. , Gugan Kothandan","doi":"10.1107/S2056989024008892","DOIUrl":"10.1107/S2056989024008892","url":null,"abstract":"<div><div>The crystal structure of the title compound C<sub>20</sub>H<sub>17</sub>NO<sub>2</sub>S features hydrogen-bonding and C—H⋯π. Docking studies show that it has a strong binding affinity with EGFR kinase, indicating its potential as a promising candidate for targeted lung cancer therapy.</div></div><div><div>The crystal structure of the title compound C<sub>20</sub>H<sub>17</sub>NO<sub>2</sub>S features hydrogen-bonding and C—H⋯π interactions. Hirshfeld surface analysis revealed that H⋯H, C⋯H/H⋯C and O⋯H/H⋯O interactions make a major contribution to the crystal packing. Docking studies were carried out to determine the binding affinity and interaction profile of the title compound with EGFR kinase, a member of the ErbB family of receptor tyrosine kinases, which is crucial for processes such as cell proliferation and differentiation. The title compound shows a strong binding affinity with EGFR kinase, with the most favourable conformation having a binding energy of −8.27 kcal mol<sup>−1</sup> and a predicted IC50 of 870.34 n<em>M</em>, indicating its potential as a promising candidate for targeted lung cancer therapy.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 10","pages":"Pages 1034-1038"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11451488/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142379770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The structure of the title 1–1′-binaphthyl derivative was refined with non-spherical atomic form factors computed using the DFT method at the PBE0/def2-TZVP basis set level.
In the racemic title compound, C28H30O2, the naphthyl ring systems subtend a dihedral angle of 68.59 (1)° and the molecular conformation is consolidated by a pair of intramolecular C—H⋯π contacts. The crystal packing features a weak C—H⋯π contact and van der Waals forces. A Hirshfeld surface analysis of the crystal structure reveals that the most significant contributions are from H⋯H (73.2%) and C⋯H/H⋯C (21.2%) contacts.
{"title":"Synthesis, non-spherical structure refinement and Hirshfeld surface analysis of racemic 2,2′-diisobutoxy-1,1′-binaphthalene","authors":"Pénayori Marie-Aimée Coulibaly , Eric Ziki , Yvon Bibila Mayaya Bisseyou , Tchambaga Etienne Camara , Souleymane Coulibaly , Drissa Sissouma","doi":"10.1107/S2056989024009101","DOIUrl":"10.1107/S2056989024009101","url":null,"abstract":"<div><div>The structure of the title 1–1′-binaphthyl derivative was refined with non-spherical atomic form factors computed using the DFT method at the PBE0/def2-TZVP basis set level.</div></div><div><div>In the racemic title compound, C<sub>28</sub>H<sub>30</sub>O<sub>2</sub>, the naphthyl ring systems subtend a dihedral angle of 68.59 (1)° and the molecular conformation is consolidated by a pair of intramolecular C—H⋯π contacts. The crystal packing features a weak C—H⋯π contact and van der Waals forces. A Hirshfeld surface analysis of the crystal structure reveals that the most significant contributions are from H⋯H (73.2%) and C⋯H/H⋯C (21.2%) contacts.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 10","pages":"Pages 1044-1048"},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11451481/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142379876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}