In November 2022, a large number of Omicron infections suddenly appeared in Beijing, but the epidemiological and clinical characteristics of the epidemic cases were unknown. We collected the data on COVID-19 cases in Fangcang Hospital in Beijing from November 20, 2022, to December 8, 2022, and analyzed the epidemiological and clinical characteristics. Of the enrolled study, 85.9% were asymptomatic and 14.1% were mild. Epidemiological data showed that the transmission speed of the Omicron variant was fast and the transmission range was wide, large-scale infections occurred in both rural and urban areas, and all age groups were susceptible to the Omicron variant. In addition, antipyretics and cough drugs were the two most used drugs, because 51.3% and 22.7% of patients had fever and cough, respectively, and 10.3% of patients took hypnotics. Furthermore, the proportion of patients with chronic diseases was low (13.9%), while the vaccination rate (71.2%) was relatively high. Based on the results, we found that most mild and asymptomatic cases did not need treatment, indicating that home isolation is correct and feasible. Although SARS-CoV-2 variants have characteristics such as high infectivity and immune-escape ability, the public should not be too afraid of COVID-19 infection; appropriate measures such as wearing masks and maintaining social distancing are sufficient to prevent reinfection.
{"title":"The epidemiological and clinical characteristics of COVID-19 patients admitted to a Fangcang shelter hospital in Beijing before the change in China's prevention and control policy","authors":"Xiaolong Xu, Hui Jiang, Maochen Li, Jvjv Shang, Yifan Shi, Yumeng Yan, Xintong Li, Shuang Song, Chunxia Zhao, Chunming Zhao, Chongpei Cen, Bo Li, Huahao Fan, Qingquan Liu","doi":"10.1002/mef2.54","DOIUrl":"10.1002/mef2.54","url":null,"abstract":"<p>In November 2022, a large number of Omicron infections suddenly appeared in Beijing, but the epidemiological and clinical characteristics of the epidemic cases were unknown. We collected the data on COVID-19 cases in Fangcang Hospital in Beijing from November 20, 2022, to December 8, 2022, and analyzed the epidemiological and clinical characteristics. Of the enrolled study, 85.9% were asymptomatic and 14.1% were mild. Epidemiological data showed that the transmission speed of the Omicron variant was fast and the transmission range was wide, large-scale infections occurred in both rural and urban areas, and all age groups were susceptible to the Omicron variant. In addition, antipyretics and cough drugs were the two most used drugs, because 51.3% and 22.7% of patients had fever and cough, respectively, and 10.3% of patients took hypnotics. Furthermore, the proportion of patients with chronic diseases was low (13.9%), while the vaccination rate (71.2%) was relatively high. Based on the results, we found that most mild and asymptomatic cases did not need treatment, indicating that home isolation is correct and feasible. Although SARS-CoV-2 variants have characteristics such as high infectivity and immune-escape ability, the public should not be too afraid of COVID-19 infection; appropriate measures such as wearing masks and maintaining social distancing are sufficient to prevent reinfection.</p>","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.54","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49150120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Recently, researchers from Cancer Research UK and The Francis Crick Institute published a paper entitled “Lung adenocarcinoma promotion by air pollutants” in Nature.1 The study focused on the impact of air pollutants, specifically PM2.5, on lung adenocarcinoma development. By analyzing human data and conducting subsequent animal experiments, the researchers found that air pollutants PM2.5 leads to an influx of macrophages into the lung and triggers the release of interleukin-1β. This, in turn, induces a progenitor-like cell state within estimated glomerular filtration rate (EGFR) mutant lung alveolar type II epithelial cells, fueling tumorigenesis, and potentially exacerbating pre-existing cancerous mutations in normal tissues.
While the association between smoking and lung cancer risk is well-established, attention has increasingly turned towards understanding the carcinogenic factors in never-smokers. As the eighth leading cause of cancer-related deaths in the United Kingdom, lung cancer in never-smokers (LCINS) is often an adenocarcinoma carrying the EGFR mutation.2 In an effort to identify significant factors influencing the development of lung cancer LCINS, the researchers analyzed environmental and epidemiological data from 32,957 cases of EGFR-driven lung cancer in the United Kingdom, Canada, South Korea, Taiwan, and China. The findings revealed a correlation between increased levels of PM2.5 and a higher incidence of lung cancer among the study participants. Later analysis of 407,509 individuals from the UK Biobank support these results, demonstrating significant increase in the projected incidence of lung cancer among those exposed to high levels of PM2.5. The researchers also conducted a 3-year follow-up study involving 228 Canadian lung cancer patients. The incidence of lung cancer was found to be significantly higher (73%) in those exposed to high levels of PM2.5 compared to those exposed to low levels (40%). Notably, this association was not observed in the Canadian cohort over a 20-year period, suggesting that 3 years of exposure to high levels of pollution may be sufficient to produce cancer.
Hill et al. further employed genetically engineered mice carrying EGFR mutations (EGFRL858R) associated with human cancer to functionally investigate whether PM2.5 exposure promoted the development of lung adenocarcinoma. The study revealed that mice were exposed to similar air pollution particles, resulting in a higher likelihood of developing lung tumors compared to control mice not exposed to pollution particles. The same experiments were performed on genetically engineered mice with Kras mutations, a common mutation in various lung tumors, yielding similar results. Through spatial analysis of clonal dynamics, the researchers discovered that PM2.5 promotes early tumorigenesis through two mechanisms: increasing the number of EGFR-mutated cells capable of forming tumors
{"title":"PM2.5 air pollutant drives the initiate of lung adenocarcinoma","authors":"Yuhong Xu, Huiyan Luo","doi":"10.1002/mef2.53","DOIUrl":"10.1002/mef2.53","url":null,"abstract":"<p>Recently, researchers from Cancer Research UK and The Francis Crick Institute published a paper entitled “Lung adenocarcinoma promotion by air pollutants” in Nature.<span><sup>1</sup></span> The study focused on the impact of air pollutants, specifically PM2.5, on lung adenocarcinoma development. By analyzing human data and conducting subsequent animal experiments, the researchers found that air pollutants PM2.5 leads to an influx of macrophages into the lung and triggers the release of interleukin-1β. This, in turn, induces a progenitor-like cell state within estimated glomerular filtration rate (EGFR) mutant lung alveolar type II epithelial cells, fueling tumorigenesis, and potentially exacerbating pre-existing cancerous mutations in normal tissues.</p><p>While the association between smoking and lung cancer risk is well-established, attention has increasingly turned towards understanding the carcinogenic factors in never-smokers. As the eighth leading cause of cancer-related deaths in the United Kingdom, lung cancer in never-smokers (LCINS) is often an adenocarcinoma carrying the EGFR mutation.<span><sup>2</sup></span> In an effort to identify significant factors influencing the development of lung cancer LCINS, the researchers analyzed environmental and epidemiological data from 32,957 cases of EGFR-driven lung cancer in the United Kingdom, Canada, South Korea, Taiwan, and China. The findings revealed a correlation between increased levels of PM2.5 and a higher incidence of lung cancer among the study participants. Later analysis of 407,509 individuals from the UK Biobank support these results, demonstrating significant increase in the projected incidence of lung cancer among those exposed to high levels of PM2.5. The researchers also conducted a 3-year follow-up study involving 228 Canadian lung cancer patients. The incidence of lung cancer was found to be significantly higher (73%) in those exposed to high levels of PM2.5 compared to those exposed to low levels (40%). Notably, this association was not observed in the Canadian cohort over a 20-year period, suggesting that 3 years of exposure to high levels of pollution may be sufficient to produce cancer.</p><p>Hill et al. further employed genetically engineered mice carrying EGFR mutations (EGFR<sup>L858R</sup>) associated with human cancer to functionally investigate whether PM2.5 exposure promoted the development of lung adenocarcinoma. The study revealed that mice were exposed to similar air pollution particles, resulting in a higher likelihood of developing lung tumors compared to control mice not exposed to pollution particles. The same experiments were performed on genetically engineered mice with Kras mutations, a common mutation in various lung tumors, yielding similar results. Through spatial analysis of clonal dynamics, the researchers discovered that PM2.5 promotes early tumorigenesis through two mechanisms: increasing the number of EGFR-mutated cells capable of forming tumors","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.53","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44605933","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Coronavirus disease-19 (COVID-19) is the global health emergency caused by SARS-CoV-2. Upon infection, antigenic determinants of the virus trigger massive production of proinflammatory/pyroptosis-associated proteins, resulting in cytokine storm, tissue damage, and multiorgan failure. Therefore, these proinflammatory/pyroptosis-associated mediators are promising therapeutic targets to combat COVID-19. Epicatechin gallate (ECG) is a polyphenol found in green tea. It has antioxidative and anti-inflammatory properties. Hence, in the present study, ECG was selected to explore its binding potential for inflammatory mediators such as interleukins, interferon-γ (IFNγ), and tumor necrosis factor-α (TNF-α), along with their native receptors. In addition, the interacting potential of ECG with pyroptosis-associated proteins, viz. caspases and BAX has also been investigated. Molecular docking analysis has revealed that ECG interacts with interleukins, IFNγ, TNF-α, cytokine receptors, caspase-1/4/11, and BAX with significant binding affinity. Several amino acid residues of these mediators were blocked by ECG through stable hydrogen bonds and hydrophobic contacts. ECG interacted with caspase-11, BAX, and TNF-R1 with better binding affinities. Therefore, the present in silico study indicates that ECG could be a potential drug to subvert cytokine storm and pyroptosis during COVID-19.
{"title":"Computational study unravels inhibitory potential of epicatechin gallate against inflammatory and pyroptosis-associated mediators in COVID-19","authors":"Prem Rajak, Abhratanu Ganguly","doi":"10.1002/mef2.52","DOIUrl":"10.1002/mef2.52","url":null,"abstract":"<p>Coronavirus disease-19 (COVID-19) is the global health emergency caused by SARS-CoV-2. Upon infection, antigenic determinants of the virus trigger massive production of proinflammatory/pyroptosis-associated proteins, resulting in cytokine storm, tissue damage, and multiorgan failure. Therefore, these proinflammatory/pyroptosis-associated mediators are promising therapeutic targets to combat COVID-19. Epicatechin gallate (ECG) is a polyphenol found in green tea. It has antioxidative and anti-inflammatory properties. Hence, in the present study, ECG was selected to explore its binding potential for inflammatory mediators such as interleukins, interferon-γ (IFNγ), and tumor necrosis factor-α (TNF-α), along with their native receptors. In addition, the interacting potential of ECG with pyroptosis-associated proteins, viz. caspases and BAX has also been investigated. Molecular docking analysis has revealed that ECG interacts with interleukins, IFNγ, TNF-α, cytokine receptors, caspase-1/4/11, and BAX with significant binding affinity. Several amino acid residues of these mediators were blocked by ECG through stable hydrogen bonds and hydrophobic contacts. ECG interacted with caspase-11, BAX, and TNF-R1 with better binding affinities. Therefore, the present in silico study indicates that ECG could be a potential drug to subvert cytokine storm and pyroptosis during COVID-19.</p>","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-07-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.52","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45414639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yongqin Ye, Shuvam Sarkar, Anand Bhaskar, Brian Tomlinson, Olivia Monteiro
Large language models (LLMs) are rapidly becoming an important foundation model that has infiltrated our daily lives in many ways. The release of GPT-3 and GPT-4, a LLM that is capable of natural language processing (NLP) that has been trained on terabytes of text data through transfer learning to apply knowledge gained from a previous task to solve a different but related problem, immediately captured the attention of the medical field to investigate how LLMs can be used to process and interpret electronic health records and to streamline clinical writing.1 NLP models have traditionally been used mainly as diagnostic aids in healthcare. Its use generally requires supervised learning on manually labeled and training datasets with a huge involvement of time from healthcare professionals.2 NLP models often lack precision, accuracy and mostly only accessible by the developers. Recent LLMs with their transformer and reinforcement learning with human feedback, have enabled better precision in text generation. The advancement of GPT-3 (Generative Pre-Trained Transformer, commonly known as ChatGPT) demonstrated that LLMs can rapidly adapt to new tasks resulting in better generalization. Also, ChatGPT has a simple interface, which has enabled broad adoption and use. Having such a versatile and user-friendly tool at our fingertips means that we can adapt to use LLMs for basic tasks such as generating clinical reports, providing clinical support, or to synthesize patient data from multiple sources.
We have used this case report as an opportunity to demonstrate the practicality of ChatGPT in basic writing tasks in a clinical context. This case report is obtained from two teaching videos uploaded by TTMedcastTraining Texas Tech University on YouTube. The two videos are of a patient called Jonathan who presented with bilateral knee pain with a history of sickle cell disease. One video is the bedside presentation of the patient by a medical intern, another is a group discussion of treatment plans for this patient. Since GPT-3 can only deal with text input, we have downloaded the transcript from each video. The transcripts sometimes contain people talking at the same time, filler words, mispronounced words, or incomplete sentences. Unaltered transcripts were submitted to ChatGPT separately for interpretation.
The workflow of using ChatGPT to generate the case report is summarized in Figure 1. We fed the transcript of Video 1 into ChatGPT and asked it to write a case report from it (Case Report 1). Then, we used the transcript of Video 2 to create Case Report 2. ChatGPT was asked to combine the two reports without summarizing and offer a diagnosis and a treatment plan. We also asked ChatGPT to write the final case report in the style for the New England Journal of Medicine. This process took around 1.5 h, including time the authors spent watching the videos. The full case report is found in Supportin
{"title":"Using ChatGPT in a clinical setting: A case report","authors":"Yongqin Ye, Shuvam Sarkar, Anand Bhaskar, Brian Tomlinson, Olivia Monteiro","doi":"10.1002/mef2.51","DOIUrl":"10.1002/mef2.51","url":null,"abstract":"<p>Large language models (LLMs) are rapidly becoming an important foundation model that has infiltrated our daily lives in many ways. The release of GPT-3 and GPT-4, a LLM that is capable of natural language processing (NLP) that has been trained on terabytes of text data through transfer learning to apply knowledge gained from a previous task to solve a different but related problem, immediately captured the attention of the medical field to investigate how LLMs can be used to process and interpret electronic health records and to streamline clinical writing.<span><sup>1</sup></span> NLP models have traditionally been used mainly as diagnostic aids in healthcare. Its use generally requires supervised learning on manually labeled and training datasets with a huge involvement of time from healthcare professionals.<span><sup>2</sup></span> NLP models often lack precision, accuracy and mostly only accessible by the developers. Recent LLMs with their transformer and reinforcement learning with human feedback, have enabled better precision in text generation. The advancement of GPT-3 (Generative Pre-Trained Transformer, commonly known as ChatGPT) demonstrated that LLMs can rapidly adapt to new tasks resulting in better generalization. Also, ChatGPT has a simple interface, which has enabled broad adoption and use. Having such a versatile and user-friendly tool at our fingertips means that we can adapt to use LLMs for basic tasks such as generating clinical reports, providing clinical support, or to synthesize patient data from multiple sources.</p><p>We have used this case report as an opportunity to demonstrate the practicality of ChatGPT in basic writing tasks in a clinical context. This case report is obtained from two teaching videos uploaded by TTMedcastTraining Texas Tech University on YouTube. The two videos are of a patient called Jonathan who presented with bilateral knee pain with a history of sickle cell disease. One video is the bedside presentation of the patient by a medical intern, another is a group discussion of treatment plans for this patient. Since GPT-3 can only deal with text input, we have downloaded the transcript from each video. The transcripts sometimes contain people talking at the same time, filler words, mispronounced words, or incomplete sentences. Unaltered transcripts were submitted to ChatGPT separately for interpretation.</p><p>The workflow of using ChatGPT to generate the case report is summarized in Figure 1. We fed the transcript of Video 1 into ChatGPT and asked it to write a case report from it (Case Report 1). Then, we used the transcript of Video 2 to create Case Report 2. ChatGPT was asked to combine the two reports without summarizing and offer a diagnosis and a treatment plan. We also asked ChatGPT to write the final case report in the style for the New England Journal of Medicine. This process took around 1.5 h, including time the authors spent watching the videos. The full case report is found in Supportin","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.51","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47396186","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Given the unprecedented phenomenon of population ageing, studies have increasing captured the heterogeneity within the ageing process. In this context, the concept of “biological age” has been introduced as an integrated measure reflecting the individualized ageing pace. Identifying reliable and robust biomarkers of age is critical for the accurate risk stratification of individuals and exploration into antiageing interventions. Numerous potential biomarkers of ageing have been proposed, spanning from molecular changes and imaging characteristics to clinical phenotypes. In this review, we will start off with a discussion of the development of ageing biomarkers, then we will provide a comprehensive summary of currently identified ageing biomarkers in humans, discuss the rationale behind each biomarker and highlight their accuracy and clinical value with a contemporary perspective. Additionally, we will discuss the challenges, potential applications, and future opportunities in this field. While research on ageing biomarkers has led to significant progress and applications, further investigations are still necessary. We anticipate that future breakthroughs in this field will involve exploring potential mechanisms, developing biomarkers by combining various data sources or employing new technologies, and validating the clinical value of existing and emerging biomarkers through comprehensive collaboration and longitudinal studies.
{"title":"Biomarkers of ageing: Current state-of-art, challenges, and opportunities","authors":"Ruiye Chen, Yueye Wang, Shiran Zhang, Gabriella Bulloch, Junyao Zhang, Huan Liao, Xianwen Shang, Malcolm Clark, Qingsheng Peng, Zongyuan Ge, Ching-Yu Cheng, Yuanxu Gao, Mingguang He, Zhuoting Zhu","doi":"10.1002/mef2.50","DOIUrl":"10.1002/mef2.50","url":null,"abstract":"<p>Given the unprecedented phenomenon of population ageing, studies have increasing captured the heterogeneity within the ageing process. In this context, the concept of “biological age” has been introduced as an integrated measure reflecting the individualized ageing pace. Identifying reliable and robust biomarkers of age is critical for the accurate risk stratification of individuals and exploration into antiageing interventions. Numerous potential biomarkers of ageing have been proposed, spanning from molecular changes and imaging characteristics to clinical phenotypes. In this review, we will start off with a discussion of the development of ageing biomarkers, then we will provide a comprehensive summary of currently identified ageing biomarkers in humans, discuss the rationale behind each biomarker and highlight their accuracy and clinical value with a contemporary perspective. Additionally, we will discuss the challenges, potential applications, and future opportunities in this field. While research on ageing biomarkers has led to significant progress and applications, further investigations are still necessary. We anticipate that future breakthroughs in this field will involve exploring potential mechanisms, developing biomarkers by combining various data sources or employing new technologies, and validating the clinical value of existing and emerging biomarkers through comprehensive collaboration and longitudinal studies.</p>","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.50","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46740855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tengda Huang, Bingxuan Yu, Xinyi Zhou, Hongyuan Pan, Ao Du, Jincheng Bai, Xiaoquan Li, Nan Jiang, Jinyi He, Kefei Yuan, Zhen Wang
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been suggested to purpose threats to health of mankind. Alcoholic hepatitis (AH) is a life-threatening acute and chronic liver failure that takes place in sufferers who drink excessively. During the epidemic, AH has an increasing incidence of severe illness and mortality. The intrinsic relationship of molecular pathogenesis, as well as common therapeutic strategies for two diseases are still poorly understood. The transcriptome of the COVID-19 and AH has been compared to obtain the altered genes and hub genes were screened out through protein–protein interaction (PPI) network analysis. Via gene ontology (GO), pathway enrichment, and transcription regulator analysis, a deeper appreciation of the interplay mechanism between hub genes were established. Finally, gene-disease and gene–drug analysis were displayed to instruct the clinical treatments. With 181 common differentially expressed genes (DEGs) of AH and COVID-19 were obtained, 10 hub genes were captured. Follow-up studies located that these 10 genes typically mediated the diseases occurrence by regulating the activities of the immune system. Other results suggest that the common pathways of the two ailments are enriched in regulating the function of immune cells and release of immune molecules. The top 10 drug candidates have been chosen primarily, some of which have been proved effective in treating AH sufferers infected with COVID-19. This study reveals the common pathogenesis of COVID-19 and AH and assist to discover necessary therapeutic targets to combat the ongoing pandemic induced via SARS-CoV-2 infection and acquire promising remedy strategies for the two diseases.
{"title":"Exploration of the link between COVID-19 and alcoholic hepatitis from the perspective of bioinformatics and systems biology","authors":"Tengda Huang, Bingxuan Yu, Xinyi Zhou, Hongyuan Pan, Ao Du, Jincheng Bai, Xiaoquan Li, Nan Jiang, Jinyi He, Kefei Yuan, Zhen Wang","doi":"10.1002/mef2.42","DOIUrl":"https://doi.org/10.1002/mef2.42","url":null,"abstract":"<p>Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been suggested to purpose threats to health of mankind. Alcoholic hepatitis (AH) is a life-threatening acute and chronic liver failure that takes place in sufferers who drink excessively. During the epidemic, AH has an increasing incidence of severe illness and mortality. The intrinsic relationship of molecular pathogenesis, as well as common therapeutic strategies for two diseases are still poorly understood. The transcriptome of the COVID-19 and AH has been compared to obtain the altered genes and hub genes were screened out through protein–protein interaction (PPI) network analysis. Via gene ontology (GO), pathway enrichment, and transcription regulator analysis, a deeper appreciation of the interplay mechanism between hub genes were established. Finally, gene-disease and gene–drug analysis were displayed to instruct the clinical treatments. With 181 common differentially expressed genes (DEGs) of AH and COVID-19 were obtained, 10 hub genes were captured. Follow-up studies located that these 10 genes typically mediated the diseases occurrence by regulating the activities of the immune system. Other results suggest that the common pathways of the two ailments are enriched in regulating the function of immune cells and release of immune molecules. The top 10 drug candidates have been chosen primarily, some of which have been proved effective in treating AH sufferers infected with COVID-19. This study reveals the common pathogenesis of COVID-19 and AH and assist to discover necessary therapeutic targets to combat the ongoing pandemic induced via SARS-CoV-2 infection and acquire promising remedy strategies for the two diseases.</p>","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.42","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"50121601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Large language models (LLMs) often refer to artificial intelligence models that consist of extensive parameters and have the ability to understand and generate human-like language. They are typically developed in a self-supervised learning manner and are trained on large quantities of unlabeled text to learn patterns in language. LLMs were initially used in natural language processing (NLP), but they have since been extended to a variety of tasks like processing biological sequences and combining text with other modalities of data. LLMs have the potential to revolutionize the way we approach scientific research and medicine. For example, by leveraging their ability to understand and interpret vast quantities of text data, LLMs can provide insights and make predictions that would otherwise be impossible.
In the medical domain, LLMs can be used to analyze immense electronic health records and improve communication between healthcare professionals and patients. For example, LLMs can be used to automate triage, medical coding, and clinical documentation, which can help to improve the accuracy and efficiency of these processes. They can also be used to improve NLP in medical chatbots and virtual assistants, allowing patients to interact with healthcare services more efficiently and effectively. They can also be used to process medical records and patient data, enabling better diagnoses and more personalized treatments. They can also be used to analyze clinical trial data and identify trends that could lead to better outcomes. Finally, LLMs can also be used to answer medical questions and provide guidance to healthcare professionals, which can help to improve the quality of care. In the accompanying Review, Zheng et al.1 undertake a major effort to write a comprehensive review of this exciting and highly evolving field.
In research, LLMs can be used to search through diverse large datasets and identify patterns that would otherwise be difficult to detect. They can also be used to generate and test hypotheses and to summarize and analyze research papers. It is clear that LLMs will be transforming the way we communicate about medicine and research, and have the potential to revolutionize the field of healthcare.
The current state-of-the-art LLM is Generative Pre-trained Transformer 4 (GPT-4), developed by OpenAI, about which Technical details have not been made public yet.2 Based on publicly available information, the number of parameters is comparable to its previous generation, GPT-3, which consists of 175 billion parameters. GPT-4 is a generative model, meaning it can generate human-like language and even create original content. Other notable LLMs include GPT-3, Bidirectional Encoder Representations from Transformers, and Text-to-Text Transfer Transformers, each with its unique strengths and capabilities. However, one example of an LLM developed specifically for the medical domain i
大型语言模型(llm)通常是指由大量参数组成的人工智能模型,具有理解和生成类人语言的能力。它们通常以自我监督的学习方式发展,并在大量未标记的文本上进行训练,以学习语言模式。llm最初用于自然语言处理(NLP),但它们已经扩展到各种任务,如处理生物序列和将文本与其他形式的数据相结合。法学硕士有可能彻底改变我们从事科学研究和医学的方式。例如,通过利用他们理解和解释大量文本数据的能力,法学硕士可以提供洞察力并做出预测,否则这是不可能的。在医学领域,法学硕士可以用来分析大量的电子健康记录,并改善医疗保健专业人员和患者之间的沟通。例如,llm可用于自动分类、医疗编码和临床文档,这有助于提高这些过程的准确性和效率。它们还可以用于改进医疗聊天机器人和虚拟助手中的NLP,使患者能够更高效地与医疗服务进行互动。它们还可以用于处理医疗记录和患者数据,从而实现更好的诊断和更个性化的治疗。它们还可以用于分析临床试验数据,并确定可能导致更好结果的趋势。最后,法学硕士还可以用来回答医学问题,并为医疗保健专业人员提供指导,这有助于提高护理质量。在随附的综述中,郑等人1承担了主要的工作,对这一令人兴奋和高度发展的领域进行了全面的综述。在研究中,法学硕士可用于搜索不同的大型数据集,并识别难以检测的模式。它们也可以用来产生和检验假设,总结和分析研究论文。很明显,法学硕士将改变我们关于医学和研究的交流方式,并有可能彻底改变医疗保健领域。目前最先进的LLM是由OpenAI开发的生成预训练变压器4 (GPT-4),有关其技术细节尚未公开根据公开信息,参数的数量与上一代GPT-3相当,后者由1750亿个参数组成。GPT-4是一个生成模型,这意味着它可以生成类似人类的语言,甚至可以创建原创内容。其他著名的llm包括GPT-3,双向编码器表示从变压器,和文本到文本传输变压器,每一个都有其独特的优势和能力。然而,专门为医疗领域开发的法学硕士的一个例子是GatorTron,它可以处理和解释电子健康记录。GatorTron是由佛罗里达大学的一组研究人员开发的。该模型在900亿字的文本上进行训练,其中包括820亿字的未识别临床文本。GatorTron在临床概念提取、医学关系提取、语义文本相似度、自然语言推理、医学问答等5个临床NLP任务上均取得了较好的表现。此外,结果表明,扩大参数数量和训练数据的大小可以显著提高这些临床NLP任务的性能。GatorTron准确处理非结构化临床文本的能力可以增强医疗人工智能系统并改善医疗服务。GatorTron是llm为特定领域或行业量身定制的潜力的一个例子,允许在专业领域进行更准确和有效的语言处理。尽管法学硕士在医学和研究方面有许多潜在的好处,但也存在风险和担忧。法学硕士可能被利用来传播虚假信息或操纵公众舆论,例如在全球卫生危机期间。法学硕士也从根本上接受了所有可用信息或数据的培训,包括不准确和偏差。这些不准确和偏差可以反映在幻觉的输出中,幻觉指的是生成文本中的错误,这些错误在语义或语法上是合理的,但实际上是不正确或荒谬的。法学硕士也存在隐私问题,因为他们可能会访问和处理敏感的个人数据。最终很难让法学硕士对他们的产出负责。因此,责任最终取决于用户。人类对法学硕士产出的监督和治理,特别是在医学和研究方面,是至关重要的。 通过临床试验,在医疗保健领域实施法学硕士必须遵守与任何其他新干预措施相同的严格性和标准,以证明法学硕士的应用至少不逊于目前的方法。最终,在医学和研究中使用法学硕士需要所有利益相关者共同承担责任,包括研究人员、技术公司、监管机构和整个社会。法学硕士的力量和潜力意味着它将继续存在,它的广泛实施是不可避免的。对其潜力的认识和合乎道德的实施对于确保负责任地使用它们并造福所有人至关重要。高元旭、Daniel T. Baptista-Hon和张康撰写了手稿。所有作者都阅读并批准了最终稿件。作者声明无利益冲突。
{"title":"The inevitable transformation of medicine and research by large language models: The possibilities and pitfalls","authors":"Yuanxu Gao, Daniel T. Baptista-Hon, Kang Zhang","doi":"10.1002/mef2.49","DOIUrl":"10.1002/mef2.49","url":null,"abstract":"<p>Large language models (LLMs) often refer to artificial intelligence models that consist of extensive parameters and have the ability to understand and generate human-like language. They are typically developed in a self-supervised learning manner and are trained on large quantities of unlabeled text to learn patterns in language. LLMs were initially used in natural language processing (NLP), but they have since been extended to a variety of tasks like processing biological sequences and combining text with other modalities of data. LLMs have the potential to revolutionize the way we approach scientific research and medicine. For example, by leveraging their ability to understand and interpret vast quantities of text data, LLMs can provide insights and make predictions that would otherwise be impossible.</p><p>In the medical domain, LLMs can be used to analyze immense electronic health records and improve communication between healthcare professionals and patients. For example, LLMs can be used to automate triage, medical coding, and clinical documentation, which can help to improve the accuracy and efficiency of these processes. They can also be used to improve NLP in medical chatbots and virtual assistants, allowing patients to interact with healthcare services more efficiently and effectively. They can also be used to process medical records and patient data, enabling better diagnoses and more personalized treatments. They can also be used to analyze clinical trial data and identify trends that could lead to better outcomes. Finally, LLMs can also be used to answer medical questions and provide guidance to healthcare professionals, which can help to improve the quality of care. In the accompanying Review, Zheng et al.<span><sup>1</sup></span> undertake a major effort to write a comprehensive review of this exciting and highly evolving field.</p><p>In research, LLMs can be used to search through diverse large datasets and identify patterns that would otherwise be difficult to detect. They can also be used to generate and test hypotheses and to summarize and analyze research papers. It is clear that LLMs will be transforming the way we communicate about medicine and research, and have the potential to revolutionize the field of healthcare.</p><p>The current state-of-the-art LLM is Generative Pre-trained Transformer 4 (GPT-4), developed by OpenAI, about which Technical details have not been made public yet.<span><sup>2</sup></span> Based on publicly available information, the number of parameters is comparable to its previous generation, GPT-3, which consists of 175 billion parameters. GPT-4 is a generative model, meaning it can generate human-like language and even create original content. Other notable LLMs include GPT-3, Bidirectional Encoder Representations from Transformers, and Text-to-Text Transfer Transformers, each with its unique strengths and capabilities. However, one example of an LLM developed specifically for the medical domain i","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.49","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47689815","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ding-Qiao Wang, Long-Yu Feng, Jin-Guo Ye, Jin-Gen Zou, Ying-Feng Zheng
Large-scale artificial intelligence (AI) models such as ChatGPT have the potential to improve performance on many benchmarks and real-world tasks. However, it is difficult to develop and maintain these models because of their complexity and resource requirements. As a result, they are still inaccessible to healthcare industries and clinicians. This situation might soon be changed because of advancements in graphics processing unit (GPU) programming and parallel computing. More importantly, leveraging existing large-scale AIs such as GPT-4 and Med-PaLM and integrating them into multiagent models (e.g., Visual-ChatGPT) will facilitate real-world implementations. This review aims to raise awareness of the potential applications of these models in healthcare. We provide a general overview of several advanced large-scale AI models, including language models, vision-language models, graph learning models, language-conditioned multiagent models, and multimodal embodied models. We discuss their potential medical applications in addition to the challenges and future directions. Importantly, we stress the need to align these models with human values and goals, such as using reinforcement learning from human feedback, to ensure that they provide accurate and personalized insights that support human decision-making and improve healthcare outcomes.
{"title":"Accelerating the integration of ChatGPT and other large-scale AI models into biomedical research and healthcare","authors":"Ding-Qiao Wang, Long-Yu Feng, Jin-Guo Ye, Jin-Gen Zou, Ying-Feng Zheng","doi":"10.1002/mef2.43","DOIUrl":"10.1002/mef2.43","url":null,"abstract":"<p>Large-scale artificial intelligence (AI) models such as ChatGPT have the potential to improve performance on many benchmarks and real-world tasks. However, it is difficult to develop and maintain these models because of their complexity and resource requirements. As a result, they are still inaccessible to healthcare industries and clinicians. This situation might soon be changed because of advancements in graphics processing unit (GPU) programming and parallel computing. More importantly, leveraging existing large-scale AIs such as GPT-4 and Med-PaLM and integrating them into multiagent models (e.g., Visual-ChatGPT) will facilitate real-world implementations. This review aims to raise awareness of the potential applications of these models in healthcare. We provide a general overview of several advanced large-scale AI models, including language models, vision-language models, graph learning models, language-conditioned multiagent models, and multimodal embodied models. We discuss their potential medical applications in addition to the challenges and future directions. Importantly, we stress the need to align these models with human values and goals, such as using reinforcement learning from human feedback, to ensure that they provide accurate and personalized insights that support human decision-making and improve healthcare outcomes.</p>","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.43","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46230747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Corneal volume (CV) is a useful index for detecting forme fruste keratoconus from normal corneas. It can be used to evaluate the whole cornea, since it can measure corneal areas up to 10 mm in diameter. Thus, CV has become the clinicians' interest as a diagnostic tool of corneal ectatic disease and a measure of corneal integrity to determine suitability for refractive surgery. We conducted a cross-sectional study including 7893 myopic patients from five ophthalmic centers to investigate the distribution pattern of CV. Our study showed that distribution of CV-3, CV-5, and CV-7 mm were slightly positively skewed and the 2.5th to 97.5th percentiles were 3.6–4.4, 10.4–12.8, 22.5–27.5 mm3, respectively. Central corneal thickness (CCT) was significantly correlated with CV in all measurement regions. The correlation between CV and CCT showed an inconsistent trend with the increase of age. The correlation coefficient between CV and CCT did not change significantly with the increase of myopia degree in low to moderate myopia, but fluctuated significantly in high myopia (less than −6.0 diopters). According to our results, corneal volume follows a slightly positively skewed distribution pattern in myopic Chinese patients. The information is useful for screening refractive surgery candidates and assessing the risk of corneal refractive surgery.
{"title":"The distribution pattern of corneal volume in Chinese myopic patients from multiple centers","authors":"Changting Tang, Linyuan Qin, Wei Wang, Suqing Lu, Yinan Li, Ying Fang, Honghua Yu, Yijun Hu","doi":"10.1002/mef2.44","DOIUrl":"10.1002/mef2.44","url":null,"abstract":"<p>Corneal volume (CV) is a useful index for detecting forme fruste keratoconus from normal corneas. It can be used to evaluate the whole cornea, since it can measure corneal areas up to 10 mm in diameter. Thus, CV has become the clinicians' interest as a diagnostic tool of corneal ectatic disease and a measure of corneal integrity to determine suitability for refractive surgery. We conducted a cross-sectional study including 7893 myopic patients from five ophthalmic centers to investigate the distribution pattern of CV. Our study showed that distribution of CV-3, CV-5, and CV-7 mm were slightly positively skewed and the 2.5th to 97.5th percentiles were 3.6–4.4, 10.4–12.8, 22.5–27.5 mm<sup>3</sup>, respectively. Central corneal thickness (CCT) was significantly correlated with CV in all measurement regions. The correlation between CV and CCT showed an inconsistent trend with the increase of age. The correlation coefficient between CV and CCT did not change significantly with the increase of myopia degree in low to moderate myopia, but fluctuated significantly in high myopia (less than −6.0 diopters). According to our results, corneal volume follows a slightly positively skewed distribution pattern in myopic Chinese patients. The information is useful for screening refractive surgery candidates and assessing the risk of corneal refractive surgery.</p>","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.44","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43854442","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yan Li, Li Bao, Caiwei Yang, Zhenglong Deng, Xin Zhang, Pin Xu, Xiaorui Su, Fanxin Zeng, Mir Q. U. Mehrabi, Qiang Yue, Bin Song, Qiyong Gong, Su Lui, Min Wu
An accurate prediction of prognosis is important for clinical treatments of glioma. In this study, a multiparameter radiomic model is proposed for accurate prognostic prediction of glioma. Three kinds of region of interest were extracted from preoperative postcontrast T1-weighted images and T2 fluid-attenuated inversion recovery images acquired from 140 glioma patients. Radiomics score (Radscore) was calculated and the conventional image features and clinical molecular characteristics that may be related to progression-free survival (PFS) were evaluated. Five uniparameter and various combinations of biparameter and multiparameter models based on above characteristics were built. The performance of these models was evaluated by concordance index (C index), and the nomogram of the multiparameter radiomic model was constructed. The results show that the proposed multiparameter radiomic model has a better prediction performance than other models. In the training and validation sets, the calibration curves of the multiparameter radiomic model for the 1-, 2-, and 3-year PFS probability demonstrate a high consistence between predictions and observations. In conclusion, this study demonstrates that the multiparameter radiomic model based on Radscore, conventional image features and clinical molecular characteristics can improve the prediction accuracy of glioma prognosis, which could be informative for individualized treatments.
{"title":"A multiparameter radiomic model for accurate prognostic prediction of glioma","authors":"Yan Li, Li Bao, Caiwei Yang, Zhenglong Deng, Xin Zhang, Pin Xu, Xiaorui Su, Fanxin Zeng, Mir Q. U. Mehrabi, Qiang Yue, Bin Song, Qiyong Gong, Su Lui, Min Wu","doi":"10.1002/mef2.41","DOIUrl":"10.1002/mef2.41","url":null,"abstract":"<p>An accurate prediction of prognosis is important for clinical treatments of glioma. In this study, a multiparameter radiomic model is proposed for accurate prognostic prediction of glioma. Three kinds of region of interest were extracted from preoperative postcontrast T1-weighted images and T2 fluid-attenuated inversion recovery images acquired from 140 glioma patients. Radiomics score (Radscore) was calculated and the conventional image features and clinical molecular characteristics that may be related to progression-free survival (PFS) were evaluated. Five uniparameter and various combinations of biparameter and multiparameter models based on above characteristics were built. The performance of these models was evaluated by concordance index (C index), and the nomogram of the multiparameter radiomic model was constructed. The results show that the proposed multiparameter radiomic model has a better prediction performance than other models. In the training and validation sets, the calibration curves of the multiparameter radiomic model for the 1-, 2-, and 3-year PFS probability demonstrate a high consistence between predictions and observations. In conclusion, this study demonstrates that the multiparameter radiomic model based on Radscore, conventional image features and clinical molecular characteristics can improve the prediction accuracy of glioma prognosis, which could be informative for individualized treatments.</p>","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":"2 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mef2.41","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47169859","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}