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Logic model-based performance management systems for export promotion agencies. 基于逻辑模型的出口促进机构绩效管理系统。
Pub Date : 2025-09-23 eCollection Date: 2025-01-01 DOI: 10.12688/openreseurope.20545.2
Stéphane Ruiz-Coupeau, Juan Manuel Ramon-Jeronimo, Raquel Florez-Lopez

Background: Export Promotion Agencies (EPAs) play a crucial role in facilitating the internationalization of small and medium enterprises (SMEs), contributing significantly to economic growth. The complexity of their operations, diversity of services provided, and challenges in attributing outcomes complicate the effective implementation of Performance Management Systems (PMSs).

Method: This study investigates how the Logic Model framework can be utilized as a strategic, structured, and flexible tool to design and implement PMSs tailored to the unique operational needs of EPAs. A qualitative, exploratory multiple-case study approach was applied, involving various types of EPAs within Spain-including provincial, regional, national, and a regional EPA belonging to a European network.

Results: The research identifies significant variability in PMS sophistication and logic model adoption across agencies. The Logic Model, emphasizing causal linkages between inputs, activities, outputs, and outcomes, offers EPAs a coherent framework to enhance transparency, accountability, and strategic learning. An extended illustrative case of a European-networked regional EPA highlights best practices in integrating structured client journeys, performance monitoring, and dynamic feedback mechanisms into service delivery.

Conclusion: This research proposes a comprehensive methodology for implementing Logic Model-based PMSs within EPAs, emphasizing stakeholder participation, flexible indicators, systematic service quality evaluation, and continuous adaptive management. By addressing the identified gaps in performance management practices within EPAs, the study contributes to both academic literature and practical guidelines, ultimately supporting the international competitiveness of SMEs and economic development objectives.

背景:出口促进机构(EPAs)在促进中小企业国际化方面发挥着至关重要的作用,对经济增长做出了重大贡献。其运作的复杂性、所提供服务的多样性以及结果归属方面的挑战使绩效管理系统(pms)的有效实施复杂化。方法:本研究探讨了逻辑模型框架如何作为一种战略性的、结构化的、灵活的工具来设计和实施pms,以适应EPAs的独特运营需求。采用了定性的、探索性的多案例研究方法,涉及西班牙境内各种类型的环境保护机构,包括省、地区、国家和属于欧洲网络的地区环境保护机构。结果:该研究确定了跨机构在PMS复杂性和逻辑模型采用方面的显著差异。逻辑模型强调投入、活动、产出和结果之间的因果关系,为环境评估机构提供了一个连贯的框架,以增强透明度、问责制和战略学习。一个扩展的欧洲网络区域环境保护局的示范案例突出了将结构化客户旅程、绩效监测和动态反馈机制整合到服务提供中的最佳实践。结论:本研究提出了一种基于逻辑模型的pms实施方法,强调利益相关者的参与、灵活的指标、系统的服务质量评估和持续的适应性管理。通过解决环境保护协议中绩效管理实践的差距,该研究为学术文献和实践指南做出了贡献,最终支持中小企业的国际竞争力和经济发展目标。
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引用次数: 0
Cod, construction, and communities: Relations between fish and architectural history in Ísafjörður, Iceland. 鳕鱼、建筑和社区:冰岛Ísafjörður鱼与建筑史之间的关系。
Pub Date : 2025-09-22 eCollection Date: 2025-01-01 DOI: 10.12688/openreseurope.20177.3
André Tavares, Karl Benediktsson, Ana Azevedo, Rafael Sousa Santos, Garðar Eyjólfsson, Michelle Valliant

Understanding the interplay between ecological processes and human-built environments is key to addressing the entangled dynamics of marine and terrestrial landscapes, yet these relationships are often studied separately. This paper addresses this issue by exploring the socioecological histories of North Atlantic fishing landscapes, with a focus on Ísafjörður, situated in the Westfjords of Iceland, a critical site in the history of cod ( Gadus morhua) fisheries. It presents the outcomes of a weeklong workshop that explored the connections between urban development and cod populations through three thematic lenses: 1) the urban development of Ísafjörður, 2) the life cycle of cod, and 3) Icelandic fisheries. A range of interdisciplinary methods was applied, including archival photography analysis, historical mapping, cod movement pattern reconstruction, oceanographic data assessment, investigation of vessel technology, and fisheries data analysis. Our findings reveal overlapping timelines that link fish population cycles with patterns of urban growth, highlighting points of convergence where ecological and social dynamics intersect. Visual representation was used as an integrative tool to translate between marine processes and the built environment. By reflecting on the workshop's experiments and achievements, this paper proposes strategies for future research at the intersection of ecology, fisheries, and architecture.

Ísafjörður位于冰岛的西峡湾,是鳕鱼渔业历史上的一个重要地方。本文讨论了为期一周的关于城市发展与大西洋鳕鱼(Gadus morhua)种群之间复杂联系的研讨会的方法。讨论了下列主题:1)Ísafjörður的城市发展;2)鳕鱼的生命周期;3)冰岛渔业。采用了几种方法,包括:a)分析档案摄影,b)整合历史制图,c)确定鳕鱼运动模式,d)海洋数据评估和制图,e)调查船舶技术和能力,f)分析国家渔业数据。视觉表现被用作统一的工具,在海洋过程和建筑环境之间进行转换。本文概述了研讨会的实验和成果,讨论了可以在未来研究类似主题时使用的方法策略。
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引用次数: 0
Impact of light logger and dosimeter placement on wearability and appeal in real-life settings. 光记录仪和剂量计的放置对现实生活中可穿戴性和吸引力的影响。
Pub Date : 2025-09-22 eCollection Date: 2025-01-01 DOI: 10.12688/openreseurope.20985.1
Johannes Zauner, Anna M Biller, Manuel Spitschan

Background: Light exposure plays a crucial role in human health, influencing sleep, circadian rhythms, and visual development. As wearable light loggers are increasingly used to monitor real-world light exposure, their design must balance metrological accuracy with comfort and usability.

Methods: We assessed the perceived wearability and appeal of eight light logger designs and placements (chest pin, wrist, necklace, sleeve collar, collar pin, neck loop, hat pin, and glasses) using an online survey completed by 145 participants (mean age 32 years, 52% female) from the UK, USA, and other countries worldwide. Each design was rated on overall attractiveness, likelihood of wear at home, at work, in public settings, in social contexts, during exercise, expected wear duration, and perceived interference with daily activities.

Results: The chest pin received the highest overall ratings, followed by wrist and necklace, while glasses and hat pin placements were rated lowest across most contexts. Likelihood of wear was highest in the home setting and significantly lower in social (β = -0.92 ± 0.08) and work (β = -0.84 ± 0.08) contexts. Compared to the chest pin, other placements were rated up to 2.6 points lower (e.g., glasses: β = -2.62 ± 0.10). Wearing position significantly influenced all ratings (p < 0.001), while sample location and gender showed minimal effects. The thematic analysis of free-text responses revealed concerns around comfort, appearance, stability, and interference with daily activities.

Conclusions: These findings highlight the importance of user-centred design and offer practical guidance for wearable light loggers that are acceptable in everyday contexts.

背景:光暴露在人类健康中起着至关重要的作用,影响睡眠、昼夜节律和视觉发育。随着可穿戴式光记录仪越来越多地用于监测现实世界的光暴露,它们的设计必须平衡计量精度与舒适性和可用性。方法:我们通过一项来自英国、美国和其他国家的145名参与者(平均年龄32岁,52%为女性)完成的在线调查,评估了八种光记录器设计和放置(胸针、手腕针、项链、袖领、领针、颈环、帽针和眼镜)的可穿戴性和吸引力。每种设计的总体吸引力、在家里、工作场所、公共场合、社交场合、锻炼时的穿着可能性、预期穿着时间以及对日常活动的干扰程度进行了评分。结果:胸前别针的整体评分最高,其次是手腕和项链,而眼镜和帽子的别针在大多数情况下的评分最低。磨损的可能性在家庭环境中最高,在社交环境(β = -0.92±0.08)和工作环境(β = -0.84±0.08)中显著降低。与胸针相比,其他位置的评分要低2.6分(例如,眼镜:β = -2.62±0.10)。穿着位置显著影响所有评分(p < 0.001),而样本位置和性别的影响最小。对自由文本回复的主题分析揭示了人们对舒适度、外观、稳定性和对日常活动的干扰的关注。结论:这些发现强调了以用户为中心设计的重要性,并为日常环境中可接受的可穿戴式光记录仪提供了实用指导。
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引用次数: 0
Encouraging reusability of computational research through Data-to-Knowledge Packages - A hydrological use case. 通过数据到知识包鼓励计算研究的可重用性——一个水文用例。
Pub Date : 2025-09-22 eCollection Date: 2025-01-01 DOI: 10.12688/openreseurope.20221.3
Markus Konkol, Astra Labuce, Sami Domisch, Merret Buurman, Vanessa Bremerich

The growing demand for reproducible research is based on the expectation that publishing research in this form will enable its reuse and the generation of new knowledge. However, reproducibility alone does not guarantee these benefits. Users still need to make considerable efforts to understand the data and analysis code before they can reuse these components in other contexts. To address this challenge, we introduce the Data-to-Knowledge Package (D2K-Package), a collection of research materials including source code and open FAIR data, virtual labs, web API services, and computational workflows. The D2K-Package's core is the reproducible basis composed of the data and source code on which an analysis is based. This core is designed such that the other components can be derived from it. The main goal of the package is to help researchers generate new knowledge by facilitating the understanding and encouraging the reuse of reproducible research. We demonstrate the applicability of the D2K-Package with a hydrological use case which can be also used for testing, and discuss its seamless integration into the research cycle.

对可重复研究的日益增长的需求是基于这样一种期望,即以这种形式发表研究将使其能够重复使用和产生新知识。然而,单凭可重复性并不能保证这些好处。在其他上下文中重用这些组件之前,用户仍然需要付出相当大的努力来理解数据和分析代码。为了应对这一挑战,我们推出了数据到知识包(D2K-Package),这是一个研究材料的集合,包括源代码和开放的FAIR数据、虚拟实验室、web API服务和计算工作流程。d2k包的核心是由分析所依据的数据和源代码组成的可再现基础。这个核心的设计使得其他组件可以从它派生出来。该软件包的主要目标是通过促进理解和鼓励可重复研究的重用来帮助研究人员产生新知识。我们通过一个水文用例展示了d2k包的适用性,该用例也可用于测试,并讨论了其与研究周期的无缝集成。
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引用次数: 0
Theoretical structural study of van der Waals complexes between oxazole and atmospheric gases CO 2 and N 2 for capture applications. 捕集应用中恶唑与大气气体co2和n2之间范德华配合物的理论结构研究。
Pub Date : 2025-09-22 eCollection Date: 2025-01-01 DOI: 10.12688/openreseurope.18925.4
A Belasri, F Tahiri, O Douass, N Inostroza-Pino, M Belmouden, H Bahmann, M Mogren Al-Mogren, M L Senent, S Dalbouha

Background: The objective of this study is to explore the potential of Oxazole (Oxa, C 3H 3NO), a fascinating heterocyclic compound naturally present, which is a potential ligand in the construction of Metal-Organic Frameworks (MOFs) for the selective capture of CO 2 in a nitrogen-rich atmosphere, using both molecular and solid-state simulation techniques.

Methods: This study investigates the equilibrium structures and binding energies of van der Waals aggregates formed by an Oxazole molecule with nonpolar molecules such as CO 2 and N 2, considering both two-body systems (Oxazole-CO 2 and Owazole-N 2) and three-body systems (Oxazole-CO 2-N 2 and Oxazole-CO 2/N 2-Au 6/Cu 6/Zn 3O 3). Molecular computations for these systems are conducted using ab initio calculations at the MP2/aug-cc-pVXZ level of theory, where X = (D, T). Additionally, solid-state simulations analyze the adsorption behaviors and energies of Oxazole-CO 2 and Oxazole-N 2 on metallic surfaces:Au, Cu and ZnO(111) through Monte Carlo methods.

Results: We find that the Oxazole exhibits more adsorption selectivity for CO 2 than for N 2. Adding a second gas to the most stable complexes, Oxazole-CO 2 and Oxazole-N 2, the Oxazole capture ability does not vary. On the contrary, it strengthens the adsorption energy of three-body complexes compared to two-body complexes. The addition of metallic clusters (Au 6, Cu 6, Zn 3O 3) and metallic surfaces (Au, Cu, ZnO) enhances the adsorption capacity, where Cu 6 is particularly efficient. Both ZnO and Cu surfaces offer significant adsorption advantages while remaining economically feasible.

Conclusions: This study demonstrates that Oxazole exhibits a strong selectivity for CO 2 over N 2, with the addition of metallic clusters and surfaces significantly enhancing its adsorption capacity. These findings highlight the potential of Oxazole-based materials for effective gas capture and separation, with positive implications for environmental sustainability.

背景:本研究的目的是利用分子和固态模拟技术探索恶唑(c3h 3NO)的潜力,这是一种天然存在的迷人杂环化合物,是构建金属有机框架(mof)的潜在配体,用于在富氮大气中选择性捕获CO 2。方法:研究了恶唑分子与CO 2、n2等非极性分子形成的van der Waals聚集体的平衡结构和结合能,考虑了两体体系(恶唑-CO 2和恶唑- n2)和三体体系(恶唑-CO 2- n2和恶唑-CO 2/ n2 - au 6/Cu 6/ zn2)。这些系统的分子计算是在理论的MP2/aug-cc- pvvxz水平上使用从头计算进行的,其中X = (D, T)。此外,通过蒙特卡罗方法,固态模拟分析了恶唑- co2和恶唑- n2在金属表面Au、Cu和ZnO(111)上的吸附行为和吸附能。结果:恶唑对co2的选择性高于对n2的选择性。在最稳定的配合物oxazole@CO 2和oxazole@N 2中加入第二种气体,恶唑的捕获能力不会发生变化。相反,与二体配合物相比,它增强了三体配合物的吸附能。金属团簇(Au 6、Cu 6、Zn 30o 3)和金属表面(Au、Cu、ZnO)的加入提高了吸附能力,其中Cu 6的吸附效率特别高。ZnO和Cu表面都具有显著的吸附优势,同时在经济上也是可行的。结论:本研究表明,恶唑对CO 2的选择性比n2强,金属团簇和表面的加入显著提高了其吸附能力。这些发现突出了恶唑基材料在有效气体捕获和分离方面的潜力,对环境可持续性具有积极意义。
{"title":"Theoretical structural study of van der Waals complexes between oxazole and atmospheric gases CO <sub>2</sub> and N <sub>2</sub> for capture applications.","authors":"A Belasri, F Tahiri, O Douass, N Inostroza-Pino, M Belmouden, H Bahmann, M Mogren Al-Mogren, M L Senent, S Dalbouha","doi":"10.12688/openreseurope.18925.4","DOIUrl":"10.12688/openreseurope.18925.4","url":null,"abstract":"<p><strong>Background: </strong>The objective of this study is to explore the potential of Oxazole (Oxa, C <sub>3</sub>H <sub>3</sub>NO), a fascinating heterocyclic compound naturally present, which is a potential ligand in the construction of Metal-Organic Frameworks (MOFs) for the selective capture of CO <sub>2</sub> in a nitrogen-rich atmosphere, using both molecular and solid-state simulation techniques.</p><p><strong>Methods: </strong>This study investigates the equilibrium structures and binding energies of van der Waals aggregates formed by an Oxazole molecule with nonpolar molecules such as CO <sub>2</sub> and N <sub>2</sub>, considering both two-body systems (Oxazole-CO <sub>2</sub> and Owazole-N <sub>2</sub>) and three-body systems (Oxazole-CO <sub>2</sub>-N <sub>2</sub> and Oxazole-CO <sub>2</sub>/N <sub>2</sub>-Au <sub>6</sub>/Cu <sub>6</sub>/Zn <sub>3</sub>O <sub>3</sub>). Molecular computations for these systems are conducted using ab initio calculations at the MP2/aug-cc-pVXZ level of theory, where X = (D, T). Additionally, solid-state simulations analyze the adsorption behaviors and energies of Oxazole-CO <sub>2</sub> and Oxazole-N <sub>2</sub> on metallic surfaces:Au, Cu and ZnO(111) through Monte Carlo methods.</p><p><strong>Results: </strong>We find that the Oxazole exhibits more adsorption selectivity for CO <sub>2</sub> than for N <sub>2</sub>. Adding a second gas to the most stable complexes, Oxazole-CO <sub>2</sub> and Oxazole-N <sub>2</sub>, the Oxazole capture ability does not vary. On the contrary, it strengthens the adsorption energy of three-body complexes compared to two-body complexes. The addition of metallic clusters (Au <sub>6</sub>, Cu <sub>6</sub>, Zn <sub>3</sub>O <sub>3</sub>) and metallic surfaces (Au, Cu, ZnO) enhances the adsorption capacity, where Cu <sub>6</sub> is particularly efficient. Both ZnO and Cu surfaces offer significant adsorption advantages while remaining economically feasible.</p><p><strong>Conclusions: </strong>This study demonstrates that Oxazole exhibits a strong selectivity for CO <sub>2</sub> over N <sub>2</sub>, with the addition of metallic clusters and surfaces significantly enhancing its adsorption capacity. These findings highlight the potential of Oxazole-based materials for effective gas capture and separation, with positive implications for environmental sustainability.</p>","PeriodicalId":74359,"journal":{"name":"Open research Europe","volume":"5 ","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2025-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12423626/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145066726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sharing behavior and health care utilization following direct-to-consumer genetic testing: a systematic review. 直接面向消费者的基因检测后的共享行为和医疗保健利用:系统综述。
Pub Date : 2025-09-19 eCollection Date: 2025-01-01 DOI: 10.12688/openreseurope.19751.2
Eva Van Steijvoort, Kaatje Goossens, Kenji Demesure, Alexandra Stanczak, Maria Siermann, Pascal Borry

Background: Direct-to-consumer genetic testing (DTC-GT) which provides genetic information directly to the public, has become widely available at a moderate cost. Since DTC-GT companies frequently recommend that consumers consult healthcare professionals for assistance in interpreting and using genetic health risk information, this could potentially have an impact on healthcare systems.

Methods: We performed a systematic review to assess: (1) the sharing behavior of actual DTC-GT consumers, (2) experiences of healthcare professionals regarding DTC-GT consumers sharing their test results and (3) healthcare utilization following DTC-GT, with a particular focus on validation of DTC-GT results and subsequent clinical actions. Our systematic review was registered in PROSPERO under the registration number CRD42024517079.

Results: Our search identified 40 unique articles eligible for inclusion that were published between 2009 en 2022. The proportion of participants who shared their DTC-GT test results with a health care professional ranged from 1% to 57%. DTC-GT consumers most commonly reported sharing their results with a primary healthcare professional. The proportion of health care professionals that had experiences with DTC-consumers sharing their test results ranged from 19% to 76%. The percentage of participants sharing their DTC-GT test with family members ranged from 18% to 98%. More detailed analysis indicated that this was frequently the case with partners, parents, and siblings. Sharing of test results with extended family members occurred less frequently. Several studies reported on instances of DTC-GT result validation and clinical actions performed based on the DTC-GT findings.

Conclusion: Conclusion While initial concerns about the impact of DTC-GT on health care systems have not fully materialized, the increasing number of consumers consulting with healthcare professionals underscores the need for preparedness and appropriate policy responses. Future research should prioritize standardizing study methodologies and expanding investigations beyond the U.S. context to better capture the global impact of DTC-GT.

背景:直接面向消费者的基因检测(DTC-GT)直接向公众提供遗传信息,已经以中等成本广泛使用。由于DTC-GT公司经常建议消费者在解释和使用遗传健康风险信息时咨询医疗保健专业人员,这可能会对医疗保健系统产生潜在影响。方法:我们进行了一项系统综述,以评估:(1)实际DTC-GT消费者的共享行为;(2)医疗保健专业人员对DTC-GT消费者分享他们的测试结果的经验;(3)DTC-GT后的医疗保健利用,特别关注DTC-GT结果的验证和随后的临床行动。我们的系统评价已在PROSPERO注册,注册号为CRD42024517079。结果:我们的搜索确定了2009年至2022年间发表的40篇符合纳入条件的独特文章。与医疗保健专业人员分享DTC-GT测试结果的参与者比例从1%到57%不等。DTC-GT消费者最常报告与初级卫生保健专业人员分享他们的结果。有与dtc消费者分享测试结果经验的医疗保健专业人员的比例从19%到76%不等。与家庭成员共享DTC-GT测试的参与者百分比从18%到98%不等。更详细的分析表明,这种情况经常发生在伴侣、父母和兄弟姐妹身上。与大家庭成员分享检测结果的频率较低。几项研究报道了DTC-GT结果验证和基于DTC-GT结果执行的临床行动的实例。结论:虽然最初对DTC-GT对卫生保健系统影响的担忧尚未完全实现,但越来越多的消费者向卫生保健专业人员咨询,强调了做好准备和适当政策应对的必要性。未来的研究应优先考虑标准化研究方法,并将调查范围扩大到美国以外,以更好地捕捉DTC-GT的全球影响。
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引用次数: 0
Towards sustainable 6G: A collaborative call to action for addressing environmental challenges in (and thanks to) future mobile networks. 迈向可持续6G:共同呼吁采取行动,应对未来移动网络中的环境挑战。
Pub Date : 2025-09-19 eCollection Date: 2024-01-01 DOI: 10.12688/openreseurope.18767.2
Regis Decorme, Sébastien Faye, Monique Calisti, Simon Pryor, Indrakshi Dey, Maria Pia Fanti, Francesco Malandrino, Chiara Lombardo

As mobile networks evolve towards 6G, sustainability must be a central focus to address the environmental impacts of increasing energy consumption and resource use. This open letter highlights insights from the "Towards Sustainable 6G" workshop, where seven EU-funded projects - 6G4Society, BeGREEN, COALESCE, IN2CCAM, CENTRIC, 6Green, and 6G-TWIN - showcased innovative solutions for integrating energy efficiency, renewable energy, and ecological resilience into next-generation mobile networks. The projects emphasize AI-driven optimisation, sustainable infrastructure design, and cross-disciplinary collaboration as key strategies for reducing the ecological footprint of 6G systems. A joint statement underscores the necessity of embedding sustainability into 6G design, with follow-up activities planned to advance green telecommunications.

随着移动网络向6G发展,可持续发展必须成为解决不断增加的能源消耗和资源使用对环境影响的核心焦点。这封信强调了“迈向可持续6G”研讨会的见解,在该研讨会上,欧盟资助的7个项目——6G4Society、BeGREEN、COALESCE、IN2CCAM、CENTRIC、6Green和6G- twin——展示了将能源效率、可再生能源和生态弹性整合到下一代移动网络中的创新解决方案。这些项目强调人工智能驱动的优化、可持续基础设施设计和跨学科合作是减少6G系统生态足迹的关键战略。一份联合声明强调了将可持续性融入6G设计的必要性,并计划开展后续活动以推进绿色电信。
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引用次数: 0
Refined and benchmarked homemade media for cost-effective, weekend-free human pluripotent stem cell culture. 精制和基准自制培养基的成本效益,周末免费的人类多能干细胞培养。
Pub Date : 2025-09-19 eCollection Date: 2024-01-01 DOI: 10.12688/openreseurope.18245.2
Lukasz Truszkowski, Sveva Bottini, Sara Bianchi, Mirko G Scrivano, Giulia Ferrari Ramondo, Linda Belluci, Helen Bell, Silvia Becca, Kirsten E Snijders, Giulia Savorè, Federica Sozza, Irene Ricca, Cristina Rubinetto, Luana Ferrara, Francesco Neri, Andrea Ditadi, Savatore Oliviero, Elisa Balmas, Catherine Elton, Alessandro Bertero

Background: Cost-effective, practical, and reproducible culture of human pluripotent stem cells (hPSCs) is required for basic and translational research. Basal 8 (B8) has emerged as a cost-effective solution for weekend-free and chemically-defined hPSC culture. However, the requirement to home-produce some recombinant growth factors for B8 can hinder access and reproducibility. Moreover, we found the published B8 formulation suboptimal in widely-used normoxic hPSC culture. Lastly, the performance of B8 in functional applications such as genome editing or organoid differentiation required systematic evaluation.

Methods: We formulated B8 with commercially available, growth factors and adjusted its composition to support normoxic culture of WTC11 human induced pluripotent stem cell line. We compared this formulation (B8+) with commercial Essential 8 (cE8) and a home-made, weekend-free E8 formulation (hE8). We measured pluripotency marker expression and cell cycle by flow cytometry, and investigated the transcriptional profiles by bulk and single-cell RNA sequencing. We further assessed genomic stability, genome editing efficiency, single-cell cloning, and differentiation in both monolayer and organoids. Finally, we validated key findings using male (H1) and female (H9) human embryonic stem cells.

Results: hE8 performed comparably to cE8 across most functional assays and cell lines. In contrast, cells in B8+ displayed higher NANOG expression and improved genome editing efficiency. At the same time, B8+ led to gene expression changes indicative of marked lineage priming, reflected in altered morphology and differential response to some differentiation protocols. Both weekend-free media resulted in a modest transcriptional shift towards a less metabolically active state, consistent with intermittent media starvation.

Conclusions: Homemade weekend-free media can provide a cost-effective alternative to commercial formulations. hE8, integrating some features of B8 while resembling cE8, emerges as a robust and practical option with limited compromises. B8+, though advantageous in some contexts, warrants caution due to lineage priming effects that may impact differentiation outcomes.

背景:高效、实用、可再生的人类多能干细胞(hPSCs)培养是基础研究和转化研究的需要。基底8 (B8)已成为一种具有成本效益的无周末和化学定义的hPSC培养解决方案。然而,要求国内生产一些重组B8生长因子可能会阻碍获取和可重复性。此外,我们发现已发表的B8配方在广泛使用的常压hPSC培养中并不理想。最后,B8在基因组编辑或类器官分化等功能应用中的表现需要系统评估。方法:用市售的生长因子配制B8,并调整其组成,以支持WTC11人诱导多能干细胞系的常压培养。我们将该配方(B8+)与商业精华8 (cE8)和自制的无周末E8配方(hE8)进行了比较。我们通过流式细胞术检测了多能性标记物的表达和细胞周期,并通过大量和单细胞RNA测序研究了转录谱。我们进一步评估了基因组稳定性、基因组编辑效率、单细胞克隆和单层和类器官的分化。最后,我们使用男性(H1)和女性(H9)人类胚胎干细胞验证了关键发现。结果:hE8在大多数功能测定和细胞系中的表现与cE8相当。相比之下,B8+的细胞表现出更高的NANOG表达和更高的基因组编辑效率。同时,B8+导致基因表达变化,表明谱系启动明显,反映在形态改变和对某些分化方案的差异反应上。两种无周末培养基都导致适度的转录向代谢活性较低的状态转变,与间歇性培养基饥饿一致。结论:自制无周末培养基可替代市售配方,具有较高的成本效益。hE8集成了B8的一些功能,同时与cE8相似,是一种强大而实用的选择,妥协有限。B8+虽然在某些情况下是有利的,但由于谱系启动效应可能影响分化结果,因此需要谨慎。
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引用次数: 0
Automated Execution of Data Pipelines based on Configuration Files. 基于配置文件的数据管道自动执行。
Pub Date : 2025-09-19 eCollection Date: 2025-01-01 DOI: 10.12688/openreseurope.21019.1
Károly Bósa, Paul Heinzlreiter

Background: Data preparation is a fundamental aspect of data engineering, a prerequisite for later tasks such as data visualization, reporting, and training machine learning models. Despite the recurring patterns in data transformation processes, the specific steps often vary depending on the project context, data sources, and application domain.

Methods: To address these challenges, this paper presents a flexible and extensible framework that enables the coordinated execution of modular data processing steps defined in a configuration file. By adopting a declarative, configuration-driven approach, the framework promotes modular, step-by-step development while substantially improving code reuse, maintainability, and adaptability. The framework also supports basic iterative execution constructs, such as loops and limited recursion, within the data pipeline definitions to accommodate more complex workflows.

Results: By enabling the reuse of existing code snippets, the framework shifts development efforts toward enhancing and refining a shared code base, rather than repeatedly creating project-specific, disposable implementations. The long-term benefits of this approach become increasingly apparent as the system evolves. As more generalized modules and functions are developed, they can reduce duplication and improve maintainability without sacrificing flexibility.

Conclusions: To assess the effectiveness of the framework, we apply cyclomatic complexity as a metric, demonstrating how the proposed approach impacts the development effort across some relatively simple, real-world data engineering scenarios.

背景:数据准备是数据工程的一个基本方面,是数据可视化、报告和训练机器学习模型等后续任务的先决条件。尽管数据转换过程中存在重复出现的模式,但具体步骤通常因项目上下文、数据源和应用程序域而异。方法:为了应对这些挑战,本文提出了一个灵活且可扩展的框架,该框架能够协调执行配置文件中定义的模块化数据处理步骤。通过采用声明式、配置驱动的方法,该框架促进了模块化、逐步开发,同时大大提高了代码重用、可维护性和适应性。该框架还在数据管道定义中支持基本的迭代执行构造,例如循环和有限递归,以适应更复杂的工作流。结果:通过支持现有代码片段的重用,框架将开发工作转向增强和细化共享代码库,而不是重复创建特定于项目的一次性实现。随着系统的发展,这种方法的长期好处变得越来越明显。随着更通用的模块和功能的开发,它们可以在不牺牲灵活性的情况下减少重复并提高可维护性。结论:为了评估框架的有效性,我们将圈复杂度作为一种度量,演示了所建议的方法如何影响一些相对简单的、真实的数据工程场景的开发工作。
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引用次数: 0
ERGA-BGE genome of the Spanish moon moth  Actias isabellae Graells, 1849: a nocturnal lepidopteran protected by the Habitats Directive. 西班牙月蛾的ERGA-BGE基因组,1849年:受生境指令保护的夜间鳞翅目。
Pub Date : 2025-09-16 eCollection Date: 2025-01-01 DOI: 10.12688/openreseurope.20658.2
Marta Vila, Neus Marí-Mena, Roger Vila, Ana Riesgo, Daniel García-Souto, Carlos Lopez-Vaamonde, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S Alioto, Leanne Haggerty, Fergal Martin, Chiara Bortoluzzi

High-quality reference genomes are critical resources for understanding biodiversity and supporting conservation efforts. We present the chromosome-level assembly of the Spanish moon moth, Actias isabellae (Graells, 1849), a nocturnal lepidopteran protected under the EU Habitats Directive. The assembly spans 0.56 Gb across 31 pseudomolecules, including the Z chromosome, with a contig N50 of 18.9 Mb and a scaffold N50 of 20.4 Mb. The mitochondrial genome was also assembled into a 15,247 bp circular sequence. Annotation identified 11,805 protein-coding genes and 2,238 non-coding genes, with a BUSCO completeness of over 94%. Notably, no W chromosome was detected, suggesting a ZZ/Z0 sex determination system. This reference genome provides an essential foundation for studying sex chromosome evolution in Lepidoptera and enables advanced population genomics monitoring of this protected species. More broadly, it contributes to ongoing efforts within the European Reference Genome Atlas and the Earth BioGenome Project to harness genomics for biodiversity conservation.

高质量的参考基因组是了解生物多样性和支持保护工作的关键资源。我们展示了西班牙月蛾,Actias isabellae (Graells, 1849)的染色体水平组装,这是一种受欧盟栖息地指令保护的夜间鳞翅目。包括Z染色体在内的31个假分子的组装长度为0.56 Gb,其中contig N50为18.9 Mb, scaffold N50为20.4 Mb。线粒体基因组也被组装成一个15,247 bp的圆形序列。注释共鉴定出11805个蛋白质编码基因和2238个非编码基因,BUSCO完整性超过94%。值得注意的是,未检测到W染色体,提示存在ZZ/Z0性别决定系统。该参考基因组为研究鳞翅目动物的性染色体进化提供了必要的基础,并为鳞翅目保护物种的高级种群基因组监测提供了基础。更广泛地说,它有助于欧洲参考基因组图谱和地球生物基因组计划正在进行的工作,以利用基因组学保护生物多样性。
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