S Holden Jones, Paul B Reed, Bitty A Roy, William F Morris, Megan L DeMarche
Danthonia californica Bolander (Poaceae)is a native perennial bunchgrass commonly used in the restoration of prairie ecosystems in the western United States. Plants of this species simultaneously produce both chasmogamous (potentially outcrossed) and cleistogamous (obligately self-fertilized) seeds. Restoration practitioners almost exclusively use chasmogamous seeds for outplanting, which are predicted to perform better in novel environments due to their greater genetic diversity. Meanwhile, cleistogamous seeds may exhibit greater local adaptation to the conditions in which the maternal plant exists. We performed a common garden experiment at two sites in the Willamette Valley, Oregon, to assess the influence of seed type and source population (eight populations from a latitudinal gradient) on seedling emergence and found no evidence of local adaptation for either seed type. Cleistogamous seeds outperformed chasmogamous seeds, regardless of whether seeds were sourced directly from the common gardens (local seeds) or other populations (nonlocal seeds). Furthermore, average seed weight had a strong positive effect on seedling emergence, despite the fact that chasmogamous seeds had significantly greater mass than cleistogamous seeds. At one common garden, we observed that seeds of both types sourced from north of our planting site performed significantly better than local or southern-sourced seeds. We also found a significant seed type and distance-dependent interaction, with cleistogamous seedling emergence peaking approximately 125 km from the garden. These results suggest that cleistogamous seeds should be considered for greater use in D. californica restoration.
{"title":"Seed type and origin-dependent seedling emergence patterns in <i>Danthonia californica</i>, a species commonly used in grassland restoration.","authors":"S Holden Jones, Paul B Reed, Bitty A Roy, William F Morris, Megan L DeMarche","doi":"10.1002/pei3.10105","DOIUrl":"10.1002/pei3.10105","url":null,"abstract":"<p><p><i>Danthonia californica</i> Bolander (Poaceae)is a native perennial bunchgrass commonly used in the restoration of prairie ecosystems in the western United States. Plants of this species simultaneously produce both chasmogamous (potentially outcrossed) and cleistogamous (obligately self-fertilized) seeds. Restoration practitioners almost exclusively use chasmogamous seeds for outplanting, which are predicted to perform better in novel environments due to their greater genetic diversity. Meanwhile, cleistogamous seeds may exhibit greater local adaptation to the conditions in which the maternal plant exists. We performed a common garden experiment at two sites in the Willamette Valley, Oregon, to assess the influence of seed type and source population (eight populations from a latitudinal gradient) on seedling emergence and found no evidence of local adaptation for either seed type. Cleistogamous seeds outperformed chasmogamous seeds, regardless of whether seeds were sourced directly from the common gardens (local seeds) or other populations (nonlocal seeds). Furthermore, average seed weight had a strong positive effect on seedling emergence, despite the fact that chasmogamous seeds had significantly greater mass than cleistogamous seeds. At one common garden, we observed that seeds of both types sourced from north of our planting site performed significantly better than local or southern-sourced seeds. We also found a significant seed type and distance-dependent interaction, with cleistogamous seedling emergence peaking approximately 125 km from the garden. These results suggest that cleistogamous seeds should be considered for greater use in <i>D. californica</i> restoration.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243543/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9597326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-03-17eCollection Date: 2023-04-01DOI: 10.1002/pei3.10102
Michael J Aspinwall, Chris J Blackman, Chelsea Maier, Mark G Tjoelker, Paul D Rymer, Danielle Creek, Jeff Chieppa, Robert J Griffin-Nolan, David T Tissue
Aridity shapes species distributions and plant growth and function worldwide. Yet, plant traits often show complex relationships with aridity, challenging our understanding of aridity as a driver of evolutionary adaptation. We grew nine genotypes of Eucalyptus camaldulensis subsp. camaldulensis sourced from an aridity gradient together in the field for ~650 days under low and high precipitation treatments. Eucalyptus camaldulesis is considered a phreatophyte (deep-rooted species that utilizes groundwater), so we hypothesized that genotypes from more arid environments would show lower aboveground productivity, higher leaf gas-exchange rates, and greater tolerance/avoidance of dry surface soils (indicated by lower responsiveness) than genotypes from less arid environments. Aridity predicted genotype responses to precipitation, with more arid genotypes showing lower responsiveness to reduced precipitation and dry surface conditions than less arid genotypes. Under low precipitation, genotype net photosynthesis and stomatal conductance increased with home-climate aridity. Across treatments, genotype intrinsic water-use efficiency and osmotic potential declined with increasing aridity while photosynthetic capacity (Rubisco carboxylation and RuBP regeneration) increased with aridity. The observed clinal patterns indicate that E. camaldulensis genotypes from extremely arid environments possess a unique strategy defined by lower responsiveness to dry surface soils, low water-use efficiency, and high photosynthetic capacity. This strategy could be underpinned by deep rooting and could be adaptive under arid conditions where heat avoidance is critical and water demand is high.
{"title":"Aridity drives clinal patterns in leaf traits and responsiveness to precipitation in a broadly distributed Australian tree species.","authors":"Michael J Aspinwall, Chris J Blackman, Chelsea Maier, Mark G Tjoelker, Paul D Rymer, Danielle Creek, Jeff Chieppa, Robert J Griffin-Nolan, David T Tissue","doi":"10.1002/pei3.10102","DOIUrl":"10.1002/pei3.10102","url":null,"abstract":"<p><p>Aridity shapes species distributions and plant growth and function worldwide. Yet, plant traits often show complex relationships with aridity, challenging our understanding of aridity as a driver of evolutionary adaptation. We grew nine genotypes of <i>Eucalyptus camaldulensis</i> subsp. <i>camaldulensis</i> sourced from an aridity gradient together in the field for ~650 days under low and high precipitation treatments. <i>Eucalyptus camaldulesis</i> is considered a phreatophyte (deep-rooted species that utilizes groundwater), so we hypothesized that genotypes from more arid environments would show lower aboveground productivity, higher leaf gas-exchange rates, and greater tolerance/avoidance of dry surface soils (indicated by lower responsiveness) than genotypes from less arid environments. Aridity predicted genotype responses to precipitation, with more arid genotypes showing lower responsiveness to reduced precipitation and dry surface conditions than less arid genotypes. Under low precipitation, genotype net photosynthesis and stomatal conductance increased with home-climate aridity. Across treatments, genotype intrinsic water-use efficiency and osmotic potential declined with increasing aridity while photosynthetic capacity (Rubisco carboxylation and RuBP regeneration) increased with aridity. The observed clinal patterns indicate that <i>E. camaldulensis</i> genotypes from extremely arid environments possess a unique strategy defined by lower responsiveness to dry surface soils, low water-use efficiency, and high photosynthetic capacity. This strategy could be underpinned by deep rooting and could be adaptive under arid conditions where heat avoidance is critical and water demand is high.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-03-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243541/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9603190","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Through crosstalk, FLAGELLIN SENSITIVE 2 (FLS2) and RESPIRATORY BURST OXIDASE HOMOLOG D (RBOHD) are involved in regulating the homeostasis of cellular reactive oxygen species (ROS) and are linked to the metabolic response of plants toward both biotic and abiotic stress. In the present study, we examined the metabolome of Arabidopsis seedlings under drought and salt conditions to better understand the potential role of FLS2 and RBOHD-dependent signaling in the regulation of abiotic stress response. We identified common metabolites and genes that are regulated by FLS2 and RBOHD, and are involved in the response to drought and salt stress. Under drought conditions, D-aspartic acid and the expression of associated genes, such as ASPARAGINE SYNTHASE 2 (ASN2), increased in both fls2 and robed/f double mutants. The accumulation of amino acids, carbohydrates, and hormones, such as L-proline, D-ribose, and indoleacetaldehyde increased in both fls2 and rbohd/f double mutants under salt conditions, as did the expression of related genes, such as PROLINE IMINOPEPTIDASE, PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE 5, and NITRILASE 3. Collectively, these results indicate that the FLS2-RBOHD module regulates plant response to drought and salt stress through ROS signaling by adjusting the accumulation of metabolites and expression of genes related to metabolite synthesis.
{"title":"FLS2-RBOHD module regulates changes in the metabolome of <i>Arabidopsis</i> in response to abiotic stress.","authors":"Xiaole Yu, Zhixin Liu, Aizhi Qin, Yaping Zhou, Zihao Zhao, Jincheng Yang, Mengke Hu, Hao Liu, Yumeng Liu, Susu Sun, Yixin Zhang, Masood Jan, George Bawa, Xuwu Sun","doi":"10.1002/pei3.10101","DOIUrl":"10.1002/pei3.10101","url":null,"abstract":"<p><p>Through crosstalk, FLAGELLIN SENSITIVE 2 (FLS2) and RESPIRATORY BURST OXIDASE HOMOLOG D (RBOHD) are involved in regulating the homeostasis of cellular reactive oxygen species (ROS) and are linked to the metabolic response of plants toward both biotic and abiotic stress. In the present study, we examined the metabolome of <i>Arabidopsis</i> seedlings under drought and salt conditions to better understand the potential role of FLS2 and RBOHD-dependent signaling in the regulation of abiotic stress response. We identified common metabolites and genes that are regulated by FLS2 and RBOHD, and are involved in the response to drought and salt stress. Under drought conditions, D-aspartic acid and the expression of associated genes, such as <i>ASPARAGINE SYNTHASE 2</i> (<i>ASN2</i>), increased in both <i>fls2</i> and <i>robed/f</i> double mutants. The accumulation of amino acids, carbohydrates, and hormones, such as L-proline, D-ribose, and indoleacetaldehyde increased in both <i>fls2</i> and <i>rbohd/f</i> double mutants under salt conditions, as did the expression of related genes, such as <i>PROLINE IMINOPEPTIDASE</i>, <i>PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE 5</i>, and <i>NITRILASE 3</i>. Collectively, these results indicate that the FLS2-RBOHD module regulates plant response to drought and salt stress through ROS signaling by adjusting the accumulation of metabolites and expression of genes related to metabolite synthesis.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168046/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9592712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-02-09eCollection Date: 2023-04-01DOI: 10.1002/pei3.10098
Ji Li, Michael A C Mintgen, Sam D'Haeyer, Anne Helfer, Hilde Nelissen, Dirk Inzé, Stijn Dhondt
As agricultural production is reaching its limits regarding outputs and land use, the need to further improve crop yield is greater than ever. The limited translatability from in vitro lab results into more natural growth conditions in soil remains problematic. Although considerable progress has been made in developing soil-growth assays to tackle this bottleneck, the majority of these assays use pots or whole trays, making them not only space- and resource-intensive, but also hampering the individual treatment of plants. Therefore, we developed a flexible and compact screening system named PhenoWell® in which individual seedlings are grown in wells filled with soil allowing single-plant treatments. The system makes use of an automated image-analysis pipeline that extracts multiple growth parameters from individual seedlings over time, including projected rosette area, relative growth rate, compactness, and stockiness. Macronutrient, hormone, salt, osmotic, and drought stress treatments were tested in the PhenoWell® system. The system is also optimized for maize with results that are consistent with Arabidopsis while different in amplitude. We conclude that the PhenoWell® system enables a high-throughput, precise, and uniform application of a small amount of solution to individually soil-grown plants, which increases the replicability and reduces variability and compound usage.
{"title":"PhenoWell®-A novel screening system for soil-grown plants.","authors":"Ji Li, Michael A C Mintgen, Sam D'Haeyer, Anne Helfer, Hilde Nelissen, Dirk Inzé, Stijn Dhondt","doi":"10.1002/pei3.10098","DOIUrl":"10.1002/pei3.10098","url":null,"abstract":"<p><p>As agricultural production is reaching its limits regarding outputs and land use, the need to further improve crop yield is greater than ever. The limited translatability from in vitro lab results into more natural growth conditions in soil remains problematic. Although considerable progress has been made in developing soil-growth assays to tackle this bottleneck, the majority of these assays use pots or whole trays, making them not only space- and resource-intensive, but also hampering the individual treatment of plants. Therefore, we developed a flexible and compact screening system named PhenoWell® in which individual seedlings are grown in wells filled with soil allowing single-plant treatments. The system makes use of an automated image-analysis pipeline that extracts multiple growth parameters from individual seedlings over time, including projected rosette area, relative growth rate, compactness, and stockiness. Macronutrient, hormone, salt, osmotic, and drought stress treatments were tested in the PhenoWell® system. The system is also optimized for maize with results that are consistent with Arabidopsis while different in amplitude. We conclude that the PhenoWell® system enables a high-throughput, precise, and uniform application of a small amount of solution to individually soil-grown plants, which increases the replicability and reduces variability and compound usage.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243540/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9603189","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-02-08eCollection Date: 2023-02-01DOI: 10.1002/pei3.10100
Jolanta Rieksta, Tao Li, Cleo L Davie-Martin, Laurids Christian Brogaard Aeppli, Toke Thomas Høye, Riikka Rinnan
Plants release a complex blend of volatile organic compounds (VOCs) in response to stressors. VOC emissions vary between contrasting environments and increase with insect herbivory and rising temperatures. However, the joint effects of herbivory and warming on plant VOC emissions are understudied, particularly in high latitudes, which are warming fast and facing increasing herbivore pressure. We assessed the individual and combined effects of chemically mimicked insect herbivory, warming, and elevation on dwarf birch (Betula glandulosa) VOC emissions in high-latitude tundra ecosystems in Narsarsuaq, South Greenland. We hypothesized that VOC emissions and compositions would respond synergistically to warming and herbivory, with the magnitude differing between elevations. Warming increased emissions of green leaf volatiles (GLVs) and isoprene. Herbivory increased the homoterpene, (E)-4,8-dimethyl-1,3,7-nonatriene, emissions, and the response was stronger at high elevation. Warming and herbivory had synergistic effects on GLV emissions. Dwarf birch emitted VOCs at similar rates at both elevations, but the VOC blends differed between elevations. Several herbivory-associated VOC groups did not respond to herbivory. Harsher abiotic conditions at high elevations might not limit VOC emissions from dwarf birch, and high-elevation plants might be better at herbivory defense than assumed. The complexity of VOC responses to experimental warming, elevation, and herbivory are challenging our understanding and predictions of future VOC emissions from dwarf birch-dominated ecosystems.
{"title":"Volatile responses of dwarf birch to mimicked insect herbivory and experimental warming at two elevations in Greenlandic tundra.","authors":"Jolanta Rieksta, Tao Li, Cleo L Davie-Martin, Laurids Christian Brogaard Aeppli, Toke Thomas Høye, Riikka Rinnan","doi":"10.1002/pei3.10100","DOIUrl":"10.1002/pei3.10100","url":null,"abstract":"<p><p>Plants release a complex blend of volatile organic compounds (VOCs) in response to stressors. VOC emissions vary between contrasting environments and increase with insect herbivory and rising temperatures. However, the joint effects of herbivory and warming on plant VOC emissions are understudied, particularly in high latitudes, which are warming fast and facing increasing herbivore pressure. We assessed the individual and combined effects of chemically mimicked insect herbivory, warming, and elevation on dwarf birch (<i>Betula glandulosa</i>) VOC emissions in high-latitude tundra ecosystems in Narsarsuaq, South Greenland. We hypothesized that VOC emissions and compositions would respond synergistically to warming and herbivory, with the magnitude differing between elevations. Warming increased emissions of green leaf volatiles (GLVs) and isoprene. Herbivory increased the homoterpene, (E)-4,8-dimethyl-1,3,7-nonatriene, emissions, and the response was stronger at high elevation. Warming and herbivory had synergistic effects on GLV emissions. Dwarf birch emitted VOCs at similar rates at both elevations, but the VOC blends differed between elevations. Several herbivory-associated VOC groups did not respond to herbivory. Harsher abiotic conditions at high elevations might not limit VOC emissions from dwarf birch, and high-elevation plants might be better at herbivory defense than assumed. The complexity of VOC responses to experimental warming, elevation, and herbivory are challenging our understanding and predictions of future VOC emissions from dwarf birch-dominated ecosystems.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-02-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168049/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9645610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Editorial Board of PlantEnvironment Interactions (PEI) is happy to announce a new article category called Methods and Techniques. PEI is still a young journal, although we have now published two full volumes (in 2021 and 2022). Over these past 2 years, we have recognized that some submitted studies may not be focused primarily on a research question or hypothesis, but instead they may be describing the invention, development, or improvement of methodological approaches or equipment that can be used to better understand how plants interact with the abiotic and biotic environment. In response to this, in 2023, we will be launching Methods and Techniques as an article category that the authors can choose on submission of their manuscripts. The guidelines for preparation of manuscripts to be considered under Methods and Techniques will be the same as those for research articles, with the same limit on total number of figures and tables combined (maximum of 10). However, the structure of Methods and Techniques does not have to adhere to the traditional Introduction— Methods— Results— Discussion format of research articles. Manuscripts submitted under this new category should still have an abstract and will need to provide evidence that the new methods/ equipment work as intended. This evidence can involve comparison with other established approaches, presentation of statistical analyses that quantify precision, accuracy and/or repeatability, and visual aids, depending on the method and its applications. In the interest of transparency and reproducible sound science, we also ask that where new protocols, workflows. or equipment are described, all details are made available at submission that would be needed by a third party to reproduce the method. This may include design plans, programming code, or detailed lab protocols, and these details can be submitted as supplementary materials for review. Finally, as with all other article categories in our journal, Methods and Techniques submissions need to involve interactions between plants and their abiotic or biotic environment for us to consider the submission for publication. As an openaccess journal, PEI is an ideal venue for publication of studies introducing new or improved methodologies, because there is great potential for those new approaches to reach and be used by a wide range of plant and environmental scientists across the globe. We look forward to receiving and reading your Methods and Techniques submissions soon.
{"title":"<i>Methods and Techniques</i>-A new article category for <i>Plant-Environment Interactions</i>.","authors":"Wayne Dawson","doi":"10.1002/pei3.10103","DOIUrl":"https://doi.org/10.1002/pei3.10103","url":null,"abstract":"The Editorial Board of PlantEnvironment Interactions (PEI) is happy to announce a new article category called Methods and Techniques. PEI is still a young journal, although we have now published two full volumes (in 2021 and 2022). Over these past 2 years, we have recognized that some submitted studies may not be focused primarily on a research question or hypothesis, but instead they may be describing the invention, development, or improvement of methodological approaches or equipment that can be used to better understand how plants interact with the abiotic and biotic environment. In response to this, in 2023, we will be launching Methods and Techniques as an article category that the authors can choose on submission of their manuscripts. The guidelines for preparation of manuscripts to be considered under Methods and Techniques will be the same as those for research articles, with the same limit on total number of figures and tables combined (maximum of 10). However, the structure of Methods and Techniques does not have to adhere to the traditional Introduction— Methods— Results— Discussion format of research articles. Manuscripts submitted under this new category should still have an abstract and will need to provide evidence that the new methods/ equipment work as intended. This evidence can involve comparison with other established approaches, presentation of statistical analyses that quantify precision, accuracy and/or repeatability, and visual aids, depending on the method and its applications. In the interest of transparency and reproducible sound science, we also ask that where new protocols, workflows. or equipment are described, all details are made available at submission that would be needed by a third party to reproduce the method. This may include design plans, programming code, or detailed lab protocols, and these details can be submitted as supplementary materials for review. Finally, as with all other article categories in our journal, Methods and Techniques submissions need to involve interactions between plants and their abiotic or biotic environment for us to consider the submission for publication. As an openaccess journal, PEI is an ideal venue for publication of studies introducing new or improved methodologies, because there is great potential for those new approaches to reach and be used by a wide range of plant and environmental scientists across the globe. We look forward to receiving and reading your Methods and Techniques submissions soon.","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168055/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9645607","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-01-11eCollection Date: 2023-02-01DOI: 10.1002/pei3.10099
Nicholas LeBlanc, Samantha Gebben
Bacterial communities play multiple functional roles in soil that have positive and negative feedbacks on plant health. However, relatively few studies have focused on the ecology of soil bacterial communities in commercial strawberry production systems. The objective of this study was to determine if ecological processes influencing soil bacterial communities are consistent among commercial strawberry production locations and plots within the same geographic region. Soil samples were collected using a spatially explicit design from three plots in two commercial strawberry production locations in the Salinas Valley region of California. Soil carbon, nitrogen, and pH were measured for each of the 72 soil samples and bacterial communities were characterized using 16 S rRNA sequencing. Multivariate analyses showed bacterial community composition was differentiated between the two strawberry production locations. Analyses of communities within plots demonstrated soil pH and nitrogen were significant predictors of bacterial community composition in one of the three sampled plots. Bacterial communities displayed spatial structure in two plots at one location based on a significant increase in community dissimilarity with increasing spatial distance. Null model analyses identified a lack of phylogenetic turnover among bacterial communities in all plots, but a greater frequency of dispersal limitation in the two plots where spatial structure was also observed. Overall, this work suggests that ecological factors influencing soil bacterial communities are not consistent among different strawberry production locations or plots which may impact the ability to predict or manage the effect of soil microbiomes on strawberry health.
{"title":"Soil bacterial communities are influenced by soil chemical characteristics and dispersal limitation in commercial strawberry production systems.","authors":"Nicholas LeBlanc, Samantha Gebben","doi":"10.1002/pei3.10099","DOIUrl":"10.1002/pei3.10099","url":null,"abstract":"<p><p>Bacterial communities play multiple functional roles in soil that have positive and negative feedbacks on plant health. However, relatively few studies have focused on the ecology of soil bacterial communities in commercial strawberry production systems. The objective of this study was to determine if ecological processes influencing soil bacterial communities are consistent among commercial strawberry production locations and plots within the same geographic region. Soil samples were collected using a spatially explicit design from three plots in two commercial strawberry production locations in the Salinas Valley region of California. Soil carbon, nitrogen, and pH were measured for each of the 72 soil samples and bacterial communities were characterized using 16 S rRNA sequencing. Multivariate analyses showed bacterial community composition was differentiated between the two strawberry production locations. Analyses of communities within plots demonstrated soil pH and nitrogen were significant predictors of bacterial community composition in one of the three sampled plots. Bacterial communities displayed spatial structure in two plots at one location based on a significant increase in community dissimilarity with increasing spatial distance. Null model analyses identified a lack of phylogenetic turnover among bacterial communities in all plots, but a greater frequency of dispersal limitation in the two plots where spatial structure was also observed. Overall, this work suggests that ecological factors influencing soil bacterial communities are not consistent among different strawberry production locations or plots which may impact the ability to predict or manage the effect of soil microbiomes on strawberry health.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168042/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9595758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ethiopia is the leading wheat producer in Sub-Saharan Africa, and the productivity has increased in the last few years. There is also a potential for irrigated wheat production in the lowlands, even though its cultivation is at infant stage. The experiment was conducted in the Oromia region at nine locations in 2021 with irrigation. The study aimed to select high yielding and stable bread wheat variety/ies for lowland areas. Twelve released bread wheat varieties were tested using randomized complete block design with two replications. Environment had the largest effect, 76.5% of total variability, while genotypes 5.0% and GE interaction 18.5% explained total sum of squares. The average grain yield of varieties across locations ranged from the lowest 1.40 t ha-1 at Girja to the highest 6.55 t ha-1 at Daro Labu, with a grand mean of 3.14 t ha-1. The result showed that varieties released for irrigated areas, Fentale 1, Ardi, and Fentale 2, were ranked the top three based on overall environment mean grain yield. The first and second principal component account 45.5% and 24.7% of the genotype by environment interaction (G × E), respectively, explained 70.2% of the total variation. Daro Lebu and Bedeno were the most productive environment, while Girja was the least productive of irrigated bread wheat for lowlands of the Oromia region. Genotype Selection Index (GSI) showed that varieties Fentale 2, Fentale 1, Pavon 76, and ETBW9578 are stable and high yielding. Based on AMMI and GGE biplot analysis, Girja indicated the most discriminating area and Sewena as representative environment for selecting wide adaptable irrigated lowland varieties. The results of the present study indicated that Fentale 2 and Fentale 1 showed better yield stability across all test environments, therefore, these bread wheat varieties are recommended for wide cultivation in irrigated areas of the Oromia region.
{"title":"Genotype × environment interaction of lowland bread wheat varieties for irrigation in different areas of Oromia.","authors":"Tilahun Bayissa, Girma Mengistu, Geleta Gerema, Urgaya Balcha, Hailu Feyisa, Aliyi Kedir, Zeleke Legese, Desu Asegid, Tesfaye Leta, Tafa Jobe","doi":"10.1002/pei3.10097","DOIUrl":"10.1002/pei3.10097","url":null,"abstract":"<p><p>Ethiopia is the leading wheat producer in Sub-Saharan Africa, and the productivity has increased in the last few years. There is also a potential for irrigated wheat production in the lowlands, even though its cultivation is at infant stage. The experiment was conducted in the Oromia region at nine locations in 2021 with irrigation. The study aimed to select high yielding and stable bread wheat variety/ies for lowland areas. Twelve released bread wheat varieties were tested using randomized complete block design with two replications. Environment had the largest effect, 76.5% of total variability, while genotypes 5.0% and GE interaction 18.5% explained total sum of squares. The average grain yield of varieties across locations ranged from the lowest 1.40 t ha<sup>-1</sup> at Girja to the highest 6.55 t ha<sup>-1</sup> at Daro Labu, with a grand mean of 3.14 t ha<sup>-1</sup>. The result showed that varieties released for irrigated areas, Fentale 1, Ardi, and Fentale 2, were ranked the top three based on overall environment mean grain yield. The first and second principal component account 45.5% and 24.7% of the genotype by environment interaction (G × E), respectively, explained 70.2% of the total variation. Daro Lebu and Bedeno were the most productive environment, while Girja was the least productive of irrigated bread wheat for lowlands of the Oromia region. Genotype Selection Index (GSI) showed that varieties Fentale 2, Fentale 1, Pavon 76, and ETBW9578 are stable and high yielding. Based on AMMI and GGE biplot analysis, Girja indicated the most discriminating area and Sewena as representative environment for selecting wide adaptable irrigated lowland varieties. The results of the present study indicated that Fentale 2 and Fentale 1 showed better yield stability across all test environments, therefore, these bread wheat varieties are recommended for wide cultivation in irrigated areas of the Oromia region.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168079/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9645606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-12-26eCollection Date: 2022-12-01DOI: 10.1002/pei3.10096
Teresa Rose, Mark Wilkinson, Claudia Lowe, Jiemeng Xu, David Hughes, Kirsty L Hassall, Keywan Hassani-Pak, Sandeep Amberkar, Clarice Noleto-Dias, Jane Ward, Sigrid Heuer
To prevent yield losses caused by climate change, it is important to identify naturally tolerant genotypes with traits and related pathways that can be targeted for crop improvement. Here we report on the characterization of contrasting vegetative heat tolerance in two UK bread wheat varieties. Under chronic heat stress, the heat-tolerant cultivar Cadenza produced an excessive number of tillers which translated into more spikes and higher grain yield compared to heat-sensitive Paragon. RNAseq and metabolomics analyses revealed that over 5000 genotype-specific genes were differentially expressed, including photosynthesis-related genes, which might explain the observed ability of Cadenza to maintain photosynthetic rate under heat stress. Around 400 genes showed a similar heat-response in both genotypes. Only 71 genes showed a genotype × temperature interaction. As well as known heat-responsive genes such as heat shock proteins (HSPs), several genes that have not been previously linked to the heat response, particularly in wheat, have been identified, including dehydrins, ankyrin-repeat protein-encoding genes, and lipases. Contrary to primary metabolites, secondary metabolites showed a highly differentiated heat response and genotypic differences. These included benzoxazinoid (DIBOA, DIMBOA), and phenylpropanoids and flavonoids with known radical scavenging capacity, which was assessed via the DPPH assay. The most highly heat-induced metabolite was (glycosylated) propanediol, which is widely used in industry as an anti-freeze. To our knowledge, this is the first report on its response to stress in plants. The identified metabolites and candidate genes provide novel targets for the development of heat-tolerant wheat.
{"title":"Novel molecules and target genes for vegetative heat tolerance in wheat.","authors":"Teresa Rose, Mark Wilkinson, Claudia Lowe, Jiemeng Xu, David Hughes, Kirsty L Hassall, Keywan Hassani-Pak, Sandeep Amberkar, Clarice Noleto-Dias, Jane Ward, Sigrid Heuer","doi":"10.1002/pei3.10096","DOIUrl":"10.1002/pei3.10096","url":null,"abstract":"<p><p>To prevent yield losses caused by climate change, it is important to identify naturally tolerant genotypes with traits and related pathways that can be targeted for crop improvement. Here we report on the characterization of contrasting vegetative heat tolerance in two UK bread wheat varieties. Under chronic heat stress, the heat-tolerant cultivar Cadenza produced an excessive number of tillers which translated into more spikes and higher grain yield compared to heat-sensitive Paragon. RNAseq and metabolomics analyses revealed that over 5000 genotype-specific genes were differentially expressed, including photosynthesis-related genes, which might explain the observed ability of Cadenza to maintain photosynthetic rate under heat stress. Around 400 genes showed a similar heat-response in both genotypes. Only 71 genes showed a genotype × temperature interaction. As well as known heat-responsive genes such as heat shock proteins (HSPs), several genes that have not been previously linked to the heat response, particularly in wheat, have been identified, including dehydrins, ankyrin-repeat protein-encoding genes, and lipases. Contrary to primary metabolites, secondary metabolites showed a highly differentiated heat response and genotypic differences. These included benzoxazinoid (DIBOA, DIMBOA), and phenylpropanoids and flavonoids with known radical scavenging capacity, which was assessed via the DPPH assay. The most highly heat-induced metabolite was (glycosylated) propanediol, which is widely used in industry as an anti-freeze. To our knowledge, this is the first report on its response to stress in plants. The identified metabolites and candidate genes provide novel targets for the development of heat-tolerant wheat.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168084/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9964054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-12-22eCollection Date: 2022-12-01DOI: 10.1002/pei3.10095
Yi Lu, Finnur Freyr Eiriksson, Margrét Thorsteinsdóttir, Henrik Toft Simonsen
Bryophytes, which lack lignin for protection, support themselves in harsh environments by producing various chemicals. In response to cold stress, lipids play a crucial role in cell adaptation and energy storage. Specifically, bryophytes survive at low temperatures by producing very long-chain polyunsaturated fatty acids (vl-PUFAs). The in-depth understanding of the lipid response to cold stress of bryophytes was studied by performing lipid profiling using ultra-high-performance liquid chromatography-quadrupole time of flight mass spectrometry (UHPLC-QTOF-MS). Two moss species (Bryum pseudotriquetrum and Physcomitrium patens) cultivated at 23°C and at 10°C were included in this study. Relative quantitative lipid concentrations were compared and the potential lipid biomarkers were identified by multivariate statistical analysis in each species. In B. pseudotriquetrum, it was observed that the phospholipids and glycolipids increased under cold stress, while storage lipids decreased. The accumulation of the lipids with high unsaturation degrees mostly appears in phospholipids and glycolipids for both mosses. The results also indicate that two unusual lipid classes in plants, sulfonolipids and phosphatidylmethanol are biosynthesized by the bryophytes. This has not been seen previously and show that bryophytes have a very diverse chemistry and substantially different from other plant groups.
{"title":"Lipidomic analysis of moss species <i>Bryum pseudotriquetrum</i> and <i>Physcomitrium patens</i> under cold stress.","authors":"Yi Lu, Finnur Freyr Eiriksson, Margrét Thorsteinsdóttir, Henrik Toft Simonsen","doi":"10.1002/pei3.10095","DOIUrl":"10.1002/pei3.10095","url":null,"abstract":"<p><p>Bryophytes, which lack lignin for protection, support themselves in harsh environments by producing various chemicals. In response to cold stress, lipids play a crucial role in cell adaptation and energy storage. Specifically, bryophytes survive at low temperatures by producing very long-chain polyunsaturated fatty acids (vl-PUFAs). The in-depth understanding of the lipid response to cold stress of bryophytes was studied by performing lipid profiling using ultra-high-performance liquid chromatography-quadrupole time of flight mass spectrometry (UHPLC-QTOF-MS). Two moss species (<i>Bryum pseudotriquetrum</i> and <i>Physcomitrium patens</i>) cultivated at 23°C and at 10°C were included in this study. Relative quantitative lipid concentrations were compared and the potential lipid biomarkers were identified by multivariate statistical analysis in each species. In <i>B. pseudotriquetrum</i>, it was observed that the phospholipids and glycolipids increased under cold stress, while storage lipids decreased. The accumulation of the lipids with high unsaturation degrees mostly appears in phospholipids and glycolipids for both mosses. The results also indicate that two unusual lipid classes in plants, sulfonolipids and phosphatidylmethanol are biosynthesized by the bryophytes. This has not been seen previously and show that bryophytes have a very diverse chemistry and substantially different from other plant groups.</p>","PeriodicalId":74457,"journal":{"name":"Plant-environment interactions (Hoboken, N.J.)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168071/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9583596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}