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Genomic Characteristics of the New HIV-1 CRF07_BC K28E32 Variant. 新型 HIV-1 CRF07_BC K28E32 变体的基因组特征
IF 1.5 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-01-01 Epub Date: 2023-07-05 DOI: 10.1089/AID.2022.0182
Yingying Ma, Zhenzhou Wan, Min Zhang, Chiyu Zhang

Accompanied with the appearance and prevalence of the new K28E32 variant among men who have sex with men, HIV-1 circulating recombinant form 07_BC (CRF07_BC) was becoming the most predominant subtype circulating in China. The K28E32 variant with five specific mutations in reverse transcriptase coding region appears to have significantly higher in vitro HIV-1 replication ability than the wild-type strain. In this study, we characterized the special mutations/substitutions in the K28E32 variant at the genomic level. Ten specific mutations that rarely appeared in other six main HIV-1 subtypes/CRFs (A-D, CRF01_AE, and CRF02_AG) were identified in the coding genes/regions of the K28E32 variant, including S77L and a novel seven-amino acid detection (32DKELYPL38) (p6Δ7) in p6, I135L in integrase, T189S in Vif, H/Y15L/F in Vpr, I264V/A and LV/LI328-329VG in gp41, and H82C and S97P in Rev. The special locations of the novel p6Δ7, and gp41 mutations I264V/A and LV/LI328-329VG in crucial protein functional domains suggest that these mutations might be functionally important to the K28E32 variant. Furthermore, eight specific substitutions were identified in Rev responsive element (RRE) of the K28E32 variant, and were revealed to increase the stability of RRE structure with a lower minimum free energy. Whether these mutations/substitutions contribute to improved transmissibility of the CRF07_BC K28E32 variant needs to be further confirmed.

随着新的K28E32变异株在男男性行为人群中的出现和流行,HIV-1循环重组型07_BC(CRF07_BC)正在成为中国最主要的循环亚型。K28E32变异株在逆转录酶编码区发生了五个特异性突变,体外复制HIV-1的能力明显高于野生型株。在本研究中,我们从基因组水平对K28E32变异株中的特殊突变/替换进行了鉴定。我们在 K28E32 变异株的编码基因/区域中发现了 10 个在其他 6 个主要 HIV-1 亚型/CRF(A-D、CRF01_AE 和 CRF02_AG)中很少出现的特殊突变、包括 p6 中的 S77L 和一个新的七氨基酸检测(32DKELYPL38)(p6Δ7)、整合酶中的 I135L、Vif 中的 T189S、Vpr 中的 H/Y15L/F、gp41 中的 I264V/A 和 LV/LI328-329VG 以及 Rev 中的 H82C 和 S97P。新型 p6Δ7 突变和 gp41 突变 I264V/A 和 LV/LI328-329VG 在关键蛋白功能域的特殊位置表明,这些突变可能对 K28E32 变体具有重要功能。此外,还在 K28E32 变体的 Rev 反应元件(RRE)中发现了 8 个特定的取代,结果表明这些取代提高了 RRE 结构的稳定性,降低了最小自由能。这些突变/替换是否有助于提高 CRF07_BC K28E32 变体的可传播性还有待进一步证实。
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引用次数: 0
Acknowledgment of Reviewers 2023. 鸣谢 2023 年审稿人。
IF 1.5 4区 医学 Q3 Medicine Pub Date : 2024-01-01 DOI: 10.1089/aid.2024.29005.ack
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引用次数: 0
Problematic Cannabis Use Is Associated with Reduced Rectal Microbial Species Richness and Diversity Among a Pilot Sample of Young Sexual and Gender Minorities. 问题大麻的使用与减少直肠微生物物种丰富度和多样性的试点样本中的年轻性和性别少数相关。
IF 1.5 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-01-01 Epub Date: 2023-04-05 DOI: 10.1089/aid.2022.0143
Ethan Morgan, Jennifer A Manuzak, Courtney Broedlow, Hannah Hudson, Richard D'Aquila, Adam W Carrico, Nichole R Klatt, Brian Mustanski

Compared to young heterosexual men, young sexual and gender minorities (YSGM) have elevated systemic inflammation and unique intestinal microbial profiles, influenced by HIV infection and substance use. However, links between cannabis use and microbial dysbiosis in this population have not been well described. In this pilot study, we aimed to characterize the complex interrelationships between cannabis use and microbial community structure in YSGM in relationship to HIV status. Cannabis use was assessed by self-administered Cannabis Use Disorder Identification Test (CUDIT) questionnaires and rectal microbial community alpha-diversity metrics were assessed via 16S ribosomal ribonucleic acid (rRNA) sequencing in a subset of YSGM (n = 42) in the RADAR cohort (aged 16-29) in Chicago. Multivariable regression models were used to assess the relationship between cannabis use and microbiome alpha-diversity metrics, adjusting for HIV status and other risk characteristics, including inflammation, which was evaluated by plasma levels of C-reactive protein (CRP). Problematic cannabis use, but not general use, was significantly inversely associated with microbial community richness (Adj. Beta = -8.13; 95% confidence interval [CI]: -15.68 to -0.59) and Shannon diversity (Adj. Beta = -0.04; 95% CI: -0.07 to 0.009). No significant association was observed between CUDIT score and community evenness, nor was any significant moderation observed by HIV status. We observed that problematic cannabis use was associated with reduced microbial community richness and Shannon diversity, adjusting for within population differences in inflammation and HIV status. Future research should aim to assess how cannabis use contributes to microbiome-related health factors among YSGM and if decreasing cannabis use can restore gut microbial community structure.

与年轻异性恋男性相比,受艾滋病毒感染和药物使用的影响,年轻性少数群体和性别少数群体(YSGM)有更高的全身性炎症和独特的肠道微生物谱。然而,大麻使用与这一人群中微生物生态失调之间的联系尚未得到很好的描述。在这项初步研究中,我们旨在描述大麻使用与YSGM中与HIV状态相关的微生物群落结构之间复杂的相互关系。通过自我管理的大麻使用障碍识别测试(CUDIT)问卷评估大麻使用情况,并通过16S核糖体核糖核酸(rRNA)测序评估芝加哥RADAR队列(16-29岁)中YSGM亚群(n = 42)的直肠微生物群落的a-多样性指标。使用多变量回归模型评估大麻使用与微生物组α多样性指标之间的关系,调整艾滋病毒状态和其他风险特征,包括炎症,这是通过血浆c反应蛋白(CRP)水平来评估的。有问题的大麻使用,而不是一般使用,与微生物群落丰富度呈显著负相关(形容词β = -8.13;95%置信区间[CI]: -15.68 ~ -0.59)和Shannon多样性(Adj. Beta = -0.04;95% CI: -0.07 ~ 0.009)。CUDIT评分与社区均匀度之间没有显著的关联,HIV状态也没有显著的调节作用。我们观察到,有问题的大麻使用与微生物群落丰富度和香农多样性的降低有关,并根据人群内炎症和艾滋病毒状态的差异进行了调整。未来的研究应旨在评估大麻使用如何有助于YSGM中微生物组相关的健康因素,以及减少大麻使用是否可以恢复肠道微生物群落结构。
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引用次数: 0
Molecular and Phylogenetic Analysis of HIV-1 Subtype C in Bahia State, Northeastern Brazil. 巴西东北部巴伊亚州 HIV-1 亚型 C 的分子和系统发育分析。
IF 1.5 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-01-01 Epub Date: 2023-08-07 DOI: 10.1089/AID.2023.0038
Rodrigo Cunha Oliveira, Juliana Sacramento Mota de Souza, Luiz Carlos Júnior Alcântara, Monick Lindenmeyer Guimarães, Carlos Brites, Joana Paixão Monteiro-Cunha

HIV-1 subtype C is associated with more than half of infections in southern Brazil and has been increasing in other regions of the country. In a previous study carried out in northeastern Brazil, we found a prevalence of 4.1% of subtype C. This work investigates the origin of subtype C in the state of Bahia based on five new viral sequences. The phylogenetic analysis showed that subtype C viruses found in Bahia descend from the main lineage that circulates in other Brazilian regions.

在巴西南部,半数以上的感染者与 HIV-1 亚型 C 有关,而在巴西其他地区,该亚型 C 的感染率也在不断上升。我们之前在巴西东北部进行的一项研究发现,C 亚型的感染率为 4.1%。这项研究根据五个新的病毒序列,调查了巴伊亚州 C 亚型的起源。系统发生学分析表明,巴伊亚州发现的 C 亚型病毒来自在巴西其他地区流行的主系。
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引用次数: 0
Vulnerability in Biomedical Research: A Historical Reflection and Practical Implications for HIV Cure-Related Research. 生物医学研究中的脆弱性:生物医学研究中的脆弱性:历史反思及对艾滋病治疗相关研究的现实意义》(A Historical Reflection and Practical Implications for HIV Cure-Related Research.
IF 1.5 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-01-01 Epub Date: 2023-06-21 DOI: 10.1089/AID.2022.0136
Emily Rao, Jeff Taylor, Andy Kaytes, Susanna Concha-Garcia, Patricia K Riggs, Davey M Smith, Karine Dubé, Sara Gianella

The concept of vulnerability in bioethics was first referenced in 1979, when the Belmont Report highlighted the need for special consideration of certain populations in the application of its general principles of respect for persons, beneficence, and justice in research with human participants. Since then, a body of literature has emerged regarding the content, status, and scope, as well as ethical and practical implications of vulnerability in biomedical research. The social history of HIV treatment development has at various points reflected and actively influenced bioethics' debate on vulnerability. In the late 1980s and early 1990s, people with AIDS activist groups drafted landmark patient empowerment manifestos like The Denver Principles, fighting to have greater involvement in the design and oversight of clinical trials related to HIV treatment, and in doing so, pushed against research ethics protocols created with the intention of protecting vulnerable populations. The determination of appropriate benefit/risk profiles in clinical trials was no longer limited to the purview of clinicians and scientists, but began to include the perspectives of people with HIV (PWH) and affected communities. In contemporary HIV cure-related research, where participants often risk health for no personal clinical benefit, the community's voiced motivations and objectives for participation continue to challenge population-based accounts of vulnerability. While the development of a framework for discussion and the establishment of clear regulatory requirements are necessary to support the practical and ethical conduct of research, they risk distraction from the fundamental value of voluntary participation and potentially overlook the unique history and perspectives of PWH in their participation in the quest toward an HIV cure.

生物伦理学中 "易损性 "的概念最早出现在 1979 年,当时《贝尔蒙特报告》强调,在对人类参 与者进行研究时,在应用尊重人、惠益和公正的一般原则时,需要特别考虑某些人群。从那时起,有关生物医学研究中脆弱性的内容、地位、范围以及伦理和实际影响的文献不断涌现。艾滋病治疗发展的社会历史在不同时期反映并积极影响了生命伦理学关于脆弱性的讨论。20 世纪 80 年代末和 90 年代初,艾滋病患者活动团体起草了《丹佛原则》等具有里程碑意义的患者赋权宣言,争取在更大程度上参与与艾滋病治疗相关的临床试验的设计和监督,并以此来反对以保护易感人群为目的而制定的研究伦理协议。在临床试验中确定适当的收益/风险概况不再局限于临床医生和科学家的职权范围,而是开始纳入艾滋病毒感染者(PWH)和受影响社区的观点。在当代与艾滋病治愈相关的研究中,参与者往往冒着健康风险,却得不到个人的临床利益,社区表达的参与动机和目标继续对基于人群的脆弱性描述提出挑战。虽然制定讨论框架和建立明确的监管要求对于支持研究的实际和伦理行为是必要的,但它们有可能偏离自愿参与的基本价值,并有可能忽视 PWH 在参与寻求艾滋病毒治愈过程中的独特历史和观点。
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引用次数: 0
Viral Persistence in the Gut-Associated Lymphoid Tissue and Barriers to HIV Cure. 病毒在肠道相关淋巴组织中的持续存在与艾滋病治愈的障碍。
IF 1.5 4区 医学 Q3 Medicine Pub Date : 2023-12-13 DOI: 10.1089/AID.2022.0180
Francesca Cossarini, Judith A Aberg, Benjamin K Chen, Saurabh Mehandru

More than 40 years after the first reported cases of what then became known as acquired immunodeficiency syndrome (AIDS), tremendous progress has been achieved in transforming the disease from almost universally fatal to a chronic manageable condition. Nonetheless, the efforts to find a preventative vaccine or a cure for the underlying infection with Human Immunodeficiency Virus (HIV) remain largely unsuccessful. Many challenges intrinsic to the virus characteristics and host response need to be overcome for either goal to be achieved. This article will review the obstacles to an effective HIV cure, specifically the steps involved in the generation of HIV latency, focusing on the role of the gut-associated lymphoid tissue, which has received less attention compared with the peripheral blood, despite being the largest repository of lymphoid tissue in the human body, and a large site for HIV persistence.

在首次报告获得性免疫缺陷综合症(艾滋病)病例的 40 多年后,我们在将这种疾病从几乎普遍致命的疾病转变为可控制的慢性疾病方面取得了巨大进步。然而,寻找预防疫苗或治愈人类免疫缺陷病毒(HIV)潜在感染的努力在很大程度上仍未取得成功。要实现其中任何一个目标,都需要克服病毒特性和宿主反应所固有的许多挑战。与外周血相比,肠道相关淋巴组织受到的关注较少,尽管它是人体内最大的淋巴组织库,也是艾滋病毒持续存在的主要场所。
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引用次数: 0
Effectiveness, weight changes and metabolic outcomes on switch to generic dolutegravir/lamivudine amongst people with HIV in Western India: An observational study 印度西部艾滋病毒感染者转用多鲁特韦/拉米夫定非专利药后的疗效、体重变化和代谢结果:观察性研究
IF 1.5 4区 医学 Q3 Medicine Pub Date : 2023-12-08 DOI: 10.1089/aid.2022.0167
Sanjay Pujari, S. Gaikwad, S. Panchawagh, A. Chitalikar, K. Joshi, Chaitrangi Rohekar, Digamber Dabhade, Vivek Bele
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引用次数: 0
Virologic non-suppression and HIV drug resistance among people who inject drugs and their sexual and injecting partners in Kenya 肯尼亚注射吸毒者及其性伴侣和注射伴侣的病毒学抑制和艾滋病毒耐药性
IF 1.5 4区 医学 Q3 Medicine Pub Date : 2023-12-08 DOI: 10.1089/aid.2023.0068
Bhavna H Chohan, H. Kingston, Ashley S. Tseng, B. Sambai, Brandon L. Guthrie, Eduan Wilkinson, J. Giandhari, L. Mbogo, A. Monroe-Wise, S. Masyuko, R. Bosire, Natasha T Ludwig-Barron, W. Sinkele, D. Bukusi, Tulio de Oliviera, Carey Farquhar, Joshua Herbeck
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引用次数: 0
Effects of the NS1–NOLC1 protein interaction on rRNA synthesis through TRF2 regulation under nucleolar stress 核极应激状态下,NS1-NOLC1 蛋白相互作用通过 TRF2 调控对 rRNA 合成的影响
IF 1.5 4区 医学 Q3 Medicine Pub Date : 2023-12-07 DOI: 10.1089/aid.2023.0067
Man Zhang, Yingyue Zeng, Fengchao Wang, Huawei Feng, Qingqing Liu, Feng Li, Shan Zhao, Jian Zhao, Zhikui Liu, Fangliang Zheng, Hongsheng Liu
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引用次数: 0
Serum Selenium and Inflammation in Individuals with Human Immunodeficiency Virus Infection. 人类免疫缺陷病毒感染者的血清硒与炎症
IF 1.5 4区 医学 Q4 IMMUNOLOGY Pub Date : 2023-12-01 Epub Date: 2023-07-31 DOI: 10.1089/AID.2023.0012
Kalpana Poudel-Tandukar, Elizabeth R Bertone-Johnson, Krishna C Poudel

HIV infection has been linked to selenium deficiency and chronic inflammation. Both selenium deficiency and inflammation have been associated with poor health outcomes among individuals with HIV. However, the role of serum selenium levels in inflammation has not been studied among individuals with HIV. We assessed the relationship of serum selenium levels to C-reactive protein (CRP), a marker of inflammation, in individuals with HIV in Kathmandu, Nepal. In this cross-sectional study, we measured the normal serum CRP and selenium levels of 233 individuals with HIV (109 women and 124 men) using the latex agglutination turbidimetric and atomic absorption methods, respectively. We used multiple linear regression analysis in examining the association of serum selenium levels with CRP adjusting for sociodemographic and clinical parameters, including antiretroviral therapy, CD4+ T cell count, chronic diseases, and body mass index. The geometric means of CRP and selenium levels were 1.43 mg/liter and 9.65 μg/dL, respectively. Overall, serum selenium levels were inversely associated with CRP levels (β for one unit change in log selenium; β = -1.01, p = .06). Mean CRP levels significantly decreased with increasing selenium across selenium tertiles (p for trend = .019). The mean serum CRP levels were 40.8% lower in the highest selenium tertile than in the lowest. Our study suggests that high serum selenium levels may reduce serum CRP levels in individuals with HIV, although a longitudinal study is warranted to establish causality.

艾滋病毒感染与缺硒和慢性炎症有关。缺硒和炎症都与艾滋病病毒感染者的不良健康状况有关。然而,关于血清硒水平在艾滋病病毒感染者炎症中的作用,还没有进行过研究。我们评估了尼泊尔加德满都 HIV 感染者的血清硒水平与炎症标志物 C 反应蛋白(CRP)之间的关系。在这项横断面研究中,我们分别采用乳胶凝集比浊法和原子吸收法测定了 233 名艾滋病病毒感染者(109 名女性和 124 名男性)的正常血清 CRP 和硒水平。在研究血清硒水平与 CRP 的关系时,我们使用了多元线性回归分析,并调整了社会人口学和临床参数,包括抗逆转录病毒疗法、CD4+ T 细胞计数、慢性疾病和体重指数。CRP 和硒水平的几何平均数分别为 1.43 毫克/升和 9.65 微克/分升。总体而言,血清硒水平与 CRP 水平成反比(β 表示对数硒的一个单位变化;β = -1.01, p = .06)。随着硒含量的增加,各硒分层的平均 CRP 水平明显下降(趋势 p = .019)。血清 CRP 平均水平在最高硒三分位数中比最低硒三分位数低 40.8%。我们的研究表明,高血清硒水平可能会降低艾滋病病毒感染者的血清 CRP 水平,不过还需要进行纵向研究以确定因果关系。
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引用次数: 0
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AIDS research and human retroviruses
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