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Acyl-CoA Synthetase Medium-Chain Family Member 5-Mediated Fatty Acid Metabolism Dysregulation Promotes the Progression of Hepatocellular Carcinoma. Acyl-CoA Synthetase Medium Chain Family Member 5 介导的脂肪酸代谢失调促进肝细胞癌的恶化
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-26 DOI: 10.1016/j.ajpath.2024.07.002
Lei Yang, Kien Pham, Yibo Xi, Shaoning Jiang, Keith Robertson, Chen Liu

Hepatocellular carcinoma (HCC) is the most common primary liver cancer, with high incidence and mortality worldwide. Despite diagnostic and therapeutic advancements, HCC remains poorly responsive to treatment, with a poor prognosis. Understanding the molecular mechanisms driving HCC is crucial for developing effective therapies. Emerging evidence indicates that dysregulated fatty acid metabolism contributes to HCC. Acyl-CoA medium-chain synthetase 5 (ACSM5), involved in fatty acid metabolism, is down-regulated in HCC; however, its role is not well understood. In this study, we analyzed ACSM5 expression in HCC patient samples and cell lines. Using newly established ACSM5-overexpressing HCC cell lines, Huh7-ACSM5 and Hepa1-6-ACSM5, we investigated the effects and regulatory mechanisms of ACSM5. Our results showed that ACSM5 was significantly down-regulated in HCC tumor tissues compared with nontumor tissues. ACSM5 expression was regulated by DNA methylation, with a DNMT1 inhibitor effectively increasing ACSM5 expression and reducing promoter region methylation. Overexpression of ACSM5 in Huh7 cells reduced fatty acid accumulation, decreased cell proliferation, migration, and invasion in vitro, and inhibited tumor growth in mouse xenografts. Furthermore, ACSM5 overexpression also decreased STAT3 phosphorylation, subsequently affecting downstream cytokine TGFB and FGF12 mRNA levels. Our findings suggest that ACSM5 down-regulation contributes to HCC progression, providing insights into its oncogenic role and highlighting its potential as a biomarker and therapeutic target for HCC.

肝细胞癌(HCC)是最常见的原发性肝癌,在全世界的发病率和死亡率都很高。尽管在诊断和治疗方面取得了进展,但 HCC 对治疗的反应仍然不佳,预后较差。了解驱动 HCC 的分子机制对于开发有效疗法至关重要。新的证据表明,脂肪酸代谢失调是导致 HCC 的原因之一。参与脂肪酸代谢的酰基-CoA 中链合成酶 5(ACSM5)在 HCC 中被下调,但其作用还不十分清楚。在本研究中,我们分析了 ACSM5 在 HCC 患者样本和细胞系中的表达。利用新建立的ACSM5表达的HCC细胞系Huh7-ACSM5和Hepa1-6-ACSM5,我们研究了ACSM5的作用和调控机制。结果表明,与非肿瘤组织相比,ACSM5在HCC肿瘤组织中明显下调。ACSM5的表达受DNA甲基化的调控,DNMT1抑制剂能有效增加ACSM5的表达并降低启动子区的甲基化。在Huh7细胞中过表达ACSM5可减少脂肪酸积累,降低体外细胞增殖、迁移和侵袭,并抑制小鼠异种移植的肿瘤生长。此外,ACSM5 的过表达还降低了 STAT3 的磷酸化,进而影响下游细胞因子 TGFB 和 FGF12 的 mRNA 水平。我们的研究结果表明,ACSM5的下调有助于HCC的进展,这为我们深入了解其致癌作用提供了线索,并凸显了其作为HCC生物标记物和治疗靶点的潜力。
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引用次数: 0
Lactate Contributes to Remote Ischemic Preconditioning-Mediated Protection Against Myocardial Ischemia Reperfusion Injury by Facilitating Autophagy via the AMPK-Mammalian Target of Rapamycin-Transcription Factor EB-Connexin 43 Axis. 乳酸盐通过AMPK-mTOR-TFEB-CX43轴促进自噬,有助于远程缺血预处理介导的心肌缺血再灌注损伤保护。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-26 DOI: 10.1016/j.ajpath.2024.07.005
Zhang-Jian Yang, Wei-Fang Zhang, Qing-Qing Jin, Zhi-Rong Wu, Yun-Yan Du, Hao Shi, Zhen-Sheng Qu, Xiao-Jian Han, Li-Ping Jiang

Remote ischemic preconditioning (RIPC) exerts a protective role on myocardial ischemia/reperfusion (I/R) injury by the release of various humoral factors. Lactate is a common metabolite in ischemic tissues. Nevertheless, little is known about the role lactate plays in myocardial I/R injury and its underlying mechanism. This investigation revealed that RIPC elevated the level of lactate in blood and myocardium. Furthermore, AZD3965, a selective monocarboxylate transporter 1 inhibitor, and 2-deoxy-d-glucose, a glycolysis inhibitor, mitigated the effects of RIPC-induced elevated lactate in the myocardium and prevented RIPC against myocardial I/R injury. In an in vitro hypoxia/reoxygenation model, lactate markedly mitigated hypoxia/reoxygenation-induced cell damage in H9c2 cells. Meanwhile, further studies suggested that lactate contributed to RIPC, rescuing I/R-induced autophagy deficiency by promoting transcription factor EB (TFEB) translocation to the nucleus through activating the AMPK-mammalian target of rapamycin (mTOR) pathway without influencing the phosphatidylinositol 3-kinase-Akt pathway, thus reducing cardiomyocyte damage. Interestingly, we also found that lactate up-regulated the mRNA and protein expression of connexin 43 (CX43) by facilitating the binding of TFEB to CX43 promoter in the myocardium. Functionally, silencing of TFEB attenuated the protective effect of lactate on cell damage, which was reversed by overexpression of CX43. Further mechanistic studies suggested lactate facilitated CX43-regulated autophagy via the AMPK-mTOR-TFEB signaling pathway. Collectively, our research demonstrates that RIPC protects against myocardial I/R injury through lactate-mediated myocardial autophagy via the AMPK-mTOR-TFEB-CX43 axis.

远程缺血预处理(RIPC)通过释放各种体液因子对心肌缺血再灌注(I/R)损伤起到保护作用。乳酸是缺血组织中常见的代谢产物。然而,人们对乳酸在心肌缺血再灌注损伤中的作用及其内在机制知之甚少。本研究发现,RIPC 会升高血液和心肌中的乳酸水平。此外,选择性单羧酸盐转运体 1(MCT1)抑制剂 AZD3965 和糖酵解抑制剂 2-脱氧-D-葡萄糖(2-DG)可减轻 RIPC 引起的心肌乳酸升高的影响,并防止 RIPC 对心肌 I/R 损伤的影响。在体外缺氧再氧合(H/R)模型中,乳酸盐明显减轻了 H9c2 细胞因 H/R 引起的细胞损伤。同时,进一步的研究表明,乳酸盐通过激活 AMPK-mTOR 通路促进 TFEB 转位至细胞核,而不影响 PI3K-Akt 通路,有助于 RIPC 挽救 I/R 诱导的自噬缺陷,从而减轻心肌细胞损伤。有趣的是,我们还发现乳酸通过促进 TFEB 与心肌中 CX43 启动子的结合,上调了 CX43 的 mRNA 和蛋白表达。从功能上讲,沉默 TFEB 可减弱乳酸盐对细胞损伤的保护作用,而过量表达 CX43 则可逆转这种作用。进一步的机理研究表明,乳酸通过AMPK-mTOR-TFEB信号通路促进了CX43调控的自噬。总之,我们的研究表明,RIPC 可通过 AMPK-mTOR-TFEB-CX43 轴乳酸介导的心肌自噬保护心肌 I/R 损伤。
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引用次数: 0
Pleckstrin-2 Mediates the Activation of AKT in Prostate Cancer and Is Repressed by Androgen Receptor. Pleckstrin-2 在前列腺癌中介导 AKT 的激活,并受到雄激素受体的抑制。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-26 DOI: 10.1016/j.ajpath.2024.07.004
Xu Han, Ali Zhang, Pan Wang, Honghao Bi, Kehan Ren, Ermin Li, Ximing Yang, Inci Aydemir, Kara Tao, Jeffrey Lin, Sarki A Abdulkadir, Jing Yang, Peng Ji

Phosphatidylinositol 3-kinase (PI3K)-AKT and androgen receptor (AR) pathways are commonly activated in prostate cancers. Their reciprocal regulation makes advanced prostate cancers difficult to treat. The current study shows that pleckstrin-2 (PLEK-2, a proto-oncoprotein involved in the activation and stabilization of AKT, connects these two pathways. Genetic evidence is provided that suggests that Plek2 deficiency largely reverted tumorigenesis in Pten prostate-specific knockout mice and that overexpression of PLEK2 promoted the proliferation and colony formation of prostate cancer cells in vitro. In addition, it was found that PLEK2 was negatively regulated by AR, that AR transcriptionally repressed PLEK2 through binding to the PLEK2 promoter region, and that overexpression of AR reduced PLEK2 expression, which inactivated AKT. Conversely, knockdown of AR in prostate cancer cells increased PLEK2 expression and activated the AKT pathway. This reciprocal inhibitory loop can be pharmacologically targeted using the PLEK2 inhibitor. It is shown that the PLEK2 inhibitor dose-dependently inhibited prostate cancer cell proliferation with the inactivation of AKT. Overall, the current study uncovers the crucial role of PLEK2 in prostate cancer proliferation and provides the rationale for targeting PLEK2 to treat prostate cancers.

PI3K-AKT和雄激素受体(AR)通路在前列腺癌中普遍被激活。它们之间的相互调控给晚期前列腺癌的治疗带来了困难。在这里,我们发现Pleckstrin-2 (PLEK2)是一种参与激活和稳定AKT的原癌基因蛋白,它连接着这两条通路。我们首先提供了遗传学证据,证明Plek2的缺乏在很大程度上逆转了Pten前列腺特异性基因敲除小鼠的肿瘤发生。PLEK2的过表达促进了前列腺癌细胞在体外的增殖和集落形成。此外,我们还发现PLEK2受AR的负调控。AR通过与PLEK2启动子区域结合转录抑制PLEK2。过量表达AR会降低PLEK2的表达,从而使AKT失活。相反,在前列腺癌细胞中敲除 AR 会增加 PLEK2 的表达并激活 AKT 通路。这种相互抑制的循环可通过 PLEK2 抑制剂进行药理学靶向治疗。我们的研究表明,PLEK2 抑制剂可通过使 AKT 失活,剂量依赖性地抑制前列腺癌细胞的增殖。总之,我们的研究揭示了 PLEK2 在前列腺癌增殖中的关键作用,并为靶向 PLEK2 治疗前列腺癌提供了理论依据。
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引用次数: 0
Artificial Intelligence-Based Histopathological Subtyping of High-Grade Serous Ovarian Cancer. 基于人工智能的高级别浆液性卵巢癌组织病理学亚型分析。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-19 DOI: 10.1016/j.ajpath.2024.06.010
Akihiko Ueda, Hidekatsu Nakai, Chiho Miyagawa, Tomoyuki Otani, Manabu Yoshida, Ryusuke Murakami, Shinichi Komiyama, Terumi Tanigawa, Takeshi Yokoi, Hirokuni Takano, Tsukasa Baba, Kiyonori Miura, Muneaki Shimada, Junzo Kigawa, Takayuki Enomoto, Junzo Hamanishi, Aikou Okamoto, Yasushi Okuno, Masaki Mandai, Noriomi Matsumura

Four subtypes of ovarian high-grade serous carcinoma (HGSC) have previously been identified, each with different prognoses and drug sensitivities. However, the accuracy of classification depended on the assessor's experience. This study aimed to develop a universal algorithm for HGSC-subtype classification using deep learning techniques. An artificial intelligence (AI)-based classification algorithm, which replicates the consensus diagnosis of pathologists, was formulated to analyze the morphological patterns and tumor-infiltrating lymphocyte counts for each tile extracted from whole slide images of ovarian HGSC available in The Cancer Genome Atlas (TCGA) data set. The accuracy of the algorithm was determined using the validation set from the Japanese Gynecologic Oncology Group 3022A1 (JGOG3022A1) and Kindai and Kyoto University (Kindai/Kyoto) cohorts. The algorithm classified the four HGSC-subtypes with mean accuracies of 0.933, 0.910, and 0.862 for the TCGA, JGOG3022A1, and Kindai/Kyoto cohorts, respectively. To compare mesenchymal transition (MT) with non-MT groups, overall survival analysis was performed in the TCGA data set. The AI-based prediction of HGSC-subtype classification in TCGA cases showed that the MT group had a worse prognosis than the non-MT group (P = 0.017). Furthermore, Cox proportional hazard regression analysis identified AI-based MT subtype classification prediction as a contributing factor along with residual disease after surgery, stage, and age. In conclusion, a robust AI-based HGSC-subtype classification algorithm was established using virtual slides of ovarian HGSC.

卵巢高级别浆液性癌(HGSC)有四种亚型,每种亚型的预后和对药物的敏感性各不相同。然而,分类的准确性取决于评估者的经验。本研究旨在利用深度学习技术开发一种用于HGSC亚型分类的通用算法。研究人员制定了一种基于人工智能(AI)的分类算法,该算法复制了病理学家的共识诊断,用于分析从癌症基因组图谱(TCGA)数据集中的卵巢HGSC全切片图像中提取的每张瓦片的形态模式和肿瘤浸润淋巴细胞计数。该算法的准确性是通过日本妇科肿瘤组 3022A1(JGOG3022A1)和京都大学(Kindai/Kyoto)队列的验证集确定的。该算法对 TCGA、JGOG3022A1 和 Kindai/Kyoto 队列中的四种 HGSC 亚型进行了分类,平均准确率分别为 0.933、0.910 和 0.862。为了比较间质转化(MT)组与非间质转化组,对TCGA数据集进行了总生存分析。基于人工智能的TCGA病例HGSC亚型分类预测显示,MT组比非MT组预后更差(p = 0.017)。此外,Cox 比例危险回归分析发现,基于人工智能的 MT 亚型分类预测与术后残留疾病、分期和年龄一样,都是导致预后不良的因素。总之,利用卵巢HGSC虚拟切片建立了一种基于人工智能的稳健HGSC亚型分类算法。
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引用次数: 0
Influenza, SARS-CoV-2, and Their Impact on Chronic Lung Diseases and Fibrosis: Exploring Therapeutic Options. 流感、SARS-CoV-2 及其对慢性肺病和纤维化的影响--探索治疗方案。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.004
Sourabh Soni, Laura Antonescu, Kaylin Ro, Jeffrey C Horowitz, Yohannes A Mebratu, Richard S Nho

Respiratory tract infections represent a significant global public health concern, disproportionately affecting vulnerable populations such as children, the elderly, and immunocompromised individuals. RNA viruses, particularly influenza viruses and coronaviruses, significantly contribute to respiratory illnesses, especially in immunosuppressed and elderly individuals. Influenza A viruses (IAVs) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continue to pose global health threats due to their capacity to cause annual epidemics, with profound implications for public health. In addition, the increase in global life expectancy is influencing the dynamics and outcomes of respiratory viral infections. Understanding the molecular mechanisms by which IAVs and SARS-CoV-2 contribute to lung disease progression is therefore crucial. The aim of this review was to comprehensively explore the impact of IAVs and SARS-CoV-2 on chronic lung diseases, with a specific focus on pulmonary fibrosis in the elderly. It also outlines potential preventive and therapeutic strategies and suggests directions for future research.

呼吸道感染是一个重大的全球公共卫生问题,对儿童、老年人和免疫力低下者等易感人群的影响尤为严重。RNA 病毒,特别是流感病毒(IVs)和冠状病毒(CoVs),是导致呼吸道疾病的主要原因,尤其是在免疫抑制人群和老年人中。甲型流感病毒(IAVs)和严重急性呼吸系统综合症冠状病毒 2(SARS-CoV-2)每年都会引发流行病,对公共卫生产生深远影响,因而继续对全球健康构成威胁。此外,全球预期寿命的延长也影响着呼吸道病毒感染的动态和结果。因此,了解 IAV 和 SARS-CoV-2 导致肺部疾病进展的分子机制至关重要。本综述旨在全面探讨 IAVs 和 SARS-CoV-2 对慢性肺部疾病的影响,特别关注老年人肺纤维化。它还概述了潜在的预防和治疗策略,并提出了未来的研究方向。
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引用次数: 0
Cardiac Atrophy, Dysfunction, and Metabolic Impairments: A Cancer-Induced Cardiomyopathy Phenotype. 心肌萎缩、功能障碍和代谢损伤:癌症诱发的心肌病表型。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.008
Leslie M Ogilvie, Luca J Delfinis, Bridget Coyle-Asbil, Vignesh Vudatha, Razan Alshamali, Bianca Garlisi, Madison Pereira, Kathy Matuszewska, Madison C Garibotti, Shivam Gandhi, Keith R Brunt, Geoffrey A Wood, Jose G Trevino, Christopher G R Perry, Jim Petrik, Jeremy A Simpson

Muscle atrophy and weakness are prevalent features of cancer. Although extensive research has characterized skeletal muscle wasting in cancer cachexia, limited studies have investigated how cardiac structure and function are affected by therapy-naive cancer. Here, the authors used orthotopic, syngeneic models of epithelial ovarian cancer and pancreatic ductal adenocarcinoma, and a patient-derived pancreatic xenograft model, to define the impacts of malignancy on cardiac structure, function, and metabolism. Tumor-bearing mice develop cardiac atrophy and intrinsic systolic and diastolic dysfunction, with arterial hypotension and exercise intolerance. In hearts of ovarian tumor-bearing mice, fatty acid-supported mitochondrial respiration decreased, and carbohydrate-supported respiration increased-showcasing a substrate shift in cardiac metabolism that is characteristic of heart failure. Epithelial ovarian cancer decreased cytoskeletal and cardioprotective gene expression, which was paralleled by down-regulation of transcription factors that regulate cardiomyocyte size and function. Patient-derived pancreatic xenograft tumor-bearing mice show altered myosin heavy chain isoform expression-also a molecular phenotype of heart failure. Markers of autophagy and ubiquitin-proteasome system were upregulated by cancer, providing evidence of catabolic signaling that promotes cardiac wasting. Together, the authors cross-validate with two cancer types, evidence of the structural, functional, and metabolic cancer-induced cardiomyopathy, thus providing translational evidence that could impact future medical management strategies for improved cancer recovery in patients.

肌肉萎缩和虚弱是癌症的普遍特征。虽然已有大量研究描述了癌症恶病质中骨骼肌萎缩的特征,但对治疗无效癌症如何影响心脏结构和功能的研究却很有限。在这里,我们使用了上皮性卵巢癌(EOC)和胰腺导管腺癌(PDAC)的同种异体模型以及源自患者的胰腺异种移植模型(PDX)来确定恶性肿瘤对心脏结构、功能和新陈代谢的影响。罹患肿瘤的小鼠会出现心脏萎缩以及内在的收缩和舒张功能障碍,并伴有动脉低血压和运动不耐受。在卵巢肿瘤小鼠的心脏中,脂肪酸支持的线粒体呼吸减少,而碳水化合物支持的呼吸增加--显示出心脏代谢中的底物转移,这是心力衰竭的特征。EOC降低了细胞骨架和心脏保护基因的表达,同时还下调了调节心肌细胞大小和功能的转录因子。PDX肿瘤小鼠的肌球蛋白重链同工酶表达发生改变,这也是心力衰竭的分子表型。癌症上调了自噬和泛素-蛋白酶体系统的标记物,为促进心脏衰竭的分解代谢信号提供了证据。我们用两种癌症类型交叉验证了癌症诱发心肌病的结构、功能和代谢证据,从而提供了可影响未来医疗管理策略的转化证据,以改善癌症患者的康复。
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引用次数: 0
Caspase-1 Inhibition Ameliorates Photoreceptor Damage Following Retinal Detachment by Inhibiting Microglial Pyroptosis. 抑制Caspase-1可通过抑制小胶质细胞凋亡改善视网膜脱离后的光感受器损伤
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.009
Yumei Cao, Lei Qiao, Yingying Song, Yuanye Yan, Yewen Ni, Huiyu Xi, Jiayu Chen, Suyan Li, Haiyang Liu

Retinal detachment (RD) is a sight-threatening condition that occurs in several retinal diseases. Microglia that reside in retina are activated after RD and are involved in the death of photoreceptor cells. The involvement of microglial pyroptosis in the early pathological process of RD is still unclear. It has been shown that VX-765, an inhibitor of caspase-1, may exert neuroprotective effects by targeting microglial pyroptosis in nervous system disease; however, whether it plays a role in RD is uncertain. This study detected and localized pyroptosis to specific cells by immunofluorescence co-staining and flow cytometry in rat RD models. The majority of gasdermin D N-terminal (GSDMD-N)-positive cells exhibited IBA1-positive or P2RY12-positive microglia in the early stage of RD, indicating the pyroptosis of microglia. Administration of VX-765 shifted the microglia phenotype from M1 to M2, inhibited microglial migration toward the outer nuclear layer (ONL) post-RD, and most importantly, inhibited microglial pyroptosis. The thickness of ONL increased with VX-765 administration, and the photoreceptors were more structured and orderly under hematoxylin and eosin staining and transmission electron microscopy, revealing the protective effects of VX-765 on photoreceptors. Overall, this study demonstrates that inflammation induced by pyroptosis of microglia is the early pathological process of RD. VX-765 may serve as a candidate therapeutic approach for the treatment of RD by targeting microglia.

视网膜脱离(RD)是一种危及视力的疾病,在多种视网膜疾病中都会发生。RD 发生后,视网膜中的小胶质细胞会被激活,并参与感光细胞的死亡。小胶质细胞脓毒症参与 RD 早期病理过程的情况尚不清楚。有研究表明,Caspase-1抑制剂VX-765可通过靶向神经系统疾病中的小胶质细胞热凋亡发挥神经保护作用,但其在RD中是否发挥作用尚不确定。本研究通过免疫荧光联合染色和流式细胞术检测了大鼠 RD 模型中特定细胞的热凋亡并将其定位。在 RD 早期,大多数 gasdermin D N 末端(GSDMD-N)阳性细胞表现为 IBA1 阳性或 P2RY12 阳性的小胶质细胞,这表明小胶质细胞发生了热凋亡。服用VX-765可使小胶质细胞表型从M1转变为M2,抑制小胶质细胞在RD后向核外层(ONL)迁移,最重要的是抑制了小胶质细胞的热凋亡。服用VX-765后,核外层厚度增加,在苏木精、伊红染色和透射电子显微镜下,光感受器的结构更加清晰有序,这揭示了VX-765对光感受器的保护作用。总之,本研究表明,小胶质细胞热解诱导的炎症是 RD 的早期病理过程。通过靶向小胶质细胞,VX-765 可作为治疗 RD 的候选疗法。
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引用次数: 0
SPLICE: Streamlining Digital Pathology Image Processing. SPLICE - 简化数字病理图像处理。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.007
Areej Alsaafin, Peyman Nejat, Abubakr Shafique, Jibran Khan, Saghir Alfasly, Ghazal Alabtah, Hamid R Tizhoosh

Digital pathology and the integration of artificial intelligence (AI) models have revolutionized histopathology, opening new opportunities. With the increasing availability of whole-slide images (WSIs), demand is growing for efficient retrieval, processing, and analysis of relevant images from vast biomedical archives. However, processing WSIs presents challenges due to their large size and content complexity. Full computer digestion of WSIs is impractical, and processing all patches individually is prohibitively expensive. In this article, we propose an unsupervised patching algorithm, Sequential Patching Lattice for Image Classification and Enquiry (SPLICE). This novel approach condenses a histopathology WSI into a compact set of representative patches, forming a collage of WSI while minimizing redundancy. SPLICE prioritizes patch quality and uniqueness by sequentially analyzing a WSI and selecting nonredundant representative features. We evaluated SPLICE for search and match applications, showing its improved accuracy, reduced computation time, and storage requirements compared with existing state-of-the-art methods. As an unsupervised method, SPLICE effectively reduces storage requirements for representing tissue images by 50%. This reduction enables numerous algorithms in computational pathology to operate much more efficiently, paving the way for accelerated adoption of digital pathology.

数字病理学和人工智能(AI)模型的整合彻底改变了组织病理学,带来了新的机遇。随着整张切片图像(WSI)的可用性不断提高,从庞大的生物医学档案中高效检索、处理和分析相关图像的需求也日益增长。然而,由于 WSIs 体积庞大、内容复杂,处理 WSIs 是一项挑战。完全用计算机消化 WSI 是不切实际的,而单独处理所有补丁又过于昂贵。在本文中,我们提出了一种无监督修补算法--用于图像分类和查询的序列修补网格(SPLICE)。这种新方法将组织病理学 WSI 浓缩为一组紧凑的代表性补丁,形成 WSI 的 "拼贴",同时最大限度地减少冗余。SPLICE 通过顺序分析 WSI 并选择非冗余的代表性特征,优先考虑斑块的质量和独特性。我们对 SPLICE 的搜索和匹配应用进行了评估,结果表明,与现有的先进方法相比,SPLICE 提高了准确性,减少了计算时间和存储要求。作为一种无监督方法,SPLICE 能有效地将表示组织图像的存储要求降低 50%。这种减少使计算病理学中的许多算法能更有效地运行,为加快数字病理学的应用铺平了道路。
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引用次数: 0
Single-Nucleus RNA Sequencing Reveals Loss of Distal Convoluted Tubule 1 Renal Tubules in HIV Viral Protein R Transgenic Mice. 单核 RNA 测序揭示了 HIV Vpr 转基因小鼠肾小管 DCT1 的缺失。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.006
Khun Zaw Latt, Teruhiko Yoshida, Shashi Shrivastav, Amin Abedini, Jeff M Reece, Zeguo Sun, Hewang Lee, Koji Okamoto, Pradeep Dagur, Yu Ishimoto, Jurgen Heymann, Yongmei Zhao, Joon-Yong Chung, Stephen Hewitt, Pedro A Jose, Kyung Lee, John Cijiang He, Cheryl A Winkler, Mark A Knepper, Tomoshige Kino, Avi Z Rosenberg, Katalin Susztak, Jeffrey B Kopp

Although hyponatremia and salt wasting are common in patients with HIV/AIDS, the understanding of their contributing factors is limited. HIV viral protein R (Vpr) contributes to HIV-associated nephropathy. To investigate the effects of Vpr on the distal tubules and on the expression level of the Slc12a3 gene, encoding the sodium-chloride cotransporter (which is responsible for sodium reabsorption in distal nephron segments), single-nucleus RNA sequencing was performed on kidney cortices from three wild-type (WT) and three Vpr transgenic (Vpr Tg) mice. The results show that the percentage of distal convoluted tubule (DCT) cells was significantly lower in Vpr Tg mice compared with WT mice (P < 0.05); in Vpr Tg mice, Slc12a3 expression was not significantly different in DCT cells. The Pvalb+ DCT1 subcluster had fewer cells in Vpr Tg mice compared with WT mice (P < 0.01). Immunohistochemistry revealed fewer Slc12a3+Pvalb+ DCT1 segments in Vpr Tg mice. Differential gene expression analysis between Vpr Tg and WT samples in the DCT cluster showed down-regulation of the Ier3 gene, which is an inhibitor of apoptosis. The in vitro knockdown of Ier3 by siRNA transfection induced apoptosis in mouse DCT cells. These observations suggest that the salt-wasting effect of Vpr in Vpr Tg mice is likely mediated by Ier3 down-regulation in DCT1 cells and loss of Slc12a3+Pvalb+ DCT1 segments.

低钠血症和盐丢失是艾滋病毒/艾滋病患者的常见病,但人们对其诱因的了解却很有限。艾滋病毒病毒蛋白 R(Vpr)是导致艾滋病毒相关性肾病的原因之一。为了研究 Vpr 对远端肾小管的影响以及对编码 Na-Cl 共转运体(负责远端肾小管钠重吸收)的 Slc12a3 基因表达水平的影响,研究人员对三只野生型(WT)和三只 Vpr 转基因(Vpr Tg)小鼠的肾皮质进行了单核 RNA 测序。结果表明,与 WT 小鼠相比,Vpr Tg 小鼠远端曲小管(DCT)细胞的百分比明显降低(P < 0.05),而在 Vpr Tg 小鼠中,DCT 细胞中 Slc12a3 的表达无明显差异。与 WT 小鼠相比,Vpr Tg 小鼠中 Pvalb+ DCT1 亚簇细胞较少(P < 0.01)。免疫组化显示,Vpr Tg 小鼠的 Slc12a3+Pvalb+ DCT1 区段较少。Vpr Tg 和 WT 在 DCT 簇中的差异基因表达分析表明,Ier3 基因下调,而 Ier3 是一种细胞凋亡抑制因子。通过 siRNA 转染体外敲除 Ier3 可诱导小鼠 DCT 细胞凋亡。这些观察结果表明,Vpr对Vpr Tg小鼠的盐耗效应可能是由DCT1细胞中的Ier3下调和Slc12a3+Pvalb+ DCT1区段的缺失介导的。
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引用次数: 0
The Role of Twist1 in Chronic Pancreatitis-Associated Pancreatic Stellate Cells. Twist1 在慢性胰腺炎相关胰腺星状细胞中的作用
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.003
Emma Geister, Dalton Ard, Heer Patel, Alyssa Findley, Godfrey DeSouza, Lyndsay Martin, Henry Knox, Natasha Gavara, Aurelia Lugea, Maria Eugenia Sabbatini

In a healthy pancreas, pancreatic stellate cells (PaSCs) synthesize the basement membrane, which is mainly composed of type IV collagen and laminin. In chronic pancreatitis (CP), PaSCs are responsible for the production of a rigid extracellular matrix (ECM) that is mainly composed of fibronectin and type I/III collagen. Reactive oxygen species evoke the formation of the rigid ECM by PaSCs. One source of reactive oxygen species is NADPH oxidase (Nox) enzymes. Nox1 up-regulates the expression of Twist1 and matrix metalloproteinase-9 (MMP-9) in PaSCs from mice with CP. This study determined the functional relationship between Twist1 and MMP-9, and other PaSC-produced proteins, and the extent to which Twist1 regulates digestion of ECM proteins in CP. Twist1 induced the expression of MMP-9 in mouse PaSCs. The action of Twist1 was not selective to MMP-9 because Twist1 induced the expression of types I and IV collagen, fibronectin, transforming growth factor, and α-smooth muscle actin. Using luciferase assay, Twist1 in human primary PaSCs increased the expression of MMP-9 at the transcriptional level in an NF-κB dependent manner. The digestion of type I/III collagen by MMP-9 secreted by PaSCs from mice with CP depended on Twist1. Thus, Twist1 in PaSCs from mice with CP induces rigid ECM production and MMP-9 transcription in an NF-κB-dependent mechanism that selectively displays proteolytic activity toward type I/III collagen.

在健康的胰腺中,胰腺星状细胞(PaSCs)合成基底膜,基底膜主要由胶原蛋白 IV 和层粘连蛋白组成。在慢性胰腺炎(CP)中,胰腺星状细胞负责制造刚性细胞外基质(ECM),该基质主要由纤维连接蛋白和胶原 I/III 组成。活性氧(ROS)可诱导肝细胞形成坚硬的细胞外基质(ECM)。ROS 的来源之一是 NADPH 氧化酶(Nox)。Nox1 能上调 CP 小鼠 PaSCs 中 Twist1 和基质金属蛋白酶(MMP)9 的表达。在此,我们确定了 1)Twist1 和 MMP-9 以及 PaSC 产生的其他蛋白质之间的功能关系;以及 2)Twist1 在多大程度上调节了 CP 中 ECM 蛋白的消化。Twist1 可诱导 mPaSCs 中 MMP-9 的表达。Twist1 的作用并不局限于 MMP-9,因为 Twist1 还能诱导胶原 I、胶原 IV、纤连蛋白、TGF-β 和 αSMA 的表达。利用荧光素酶试验,Twist1 在 hPaSCs 中以 NF-ĸB 依赖性方式在转录水平上增加了 MMP-9 的表达。CP 小鼠的 PaSCs 分泌的 MMP-9 对胶原 I/III 的消化依赖于 Twist1。因此,CP 小鼠 PaSCs 中的 Twist1 通过 NF-ĸB 依赖性机制诱导产生刚性 ECM 并转录 MMP-9,MMP-9 选择性地对胶原 I/III 具有蛋白水解活性。
{"title":"The Role of Twist1 in Chronic Pancreatitis-Associated Pancreatic Stellate Cells.","authors":"Emma Geister, Dalton Ard, Heer Patel, Alyssa Findley, Godfrey DeSouza, Lyndsay Martin, Henry Knox, Natasha Gavara, Aurelia Lugea, Maria Eugenia Sabbatini","doi":"10.1016/j.ajpath.2024.06.003","DOIUrl":"10.1016/j.ajpath.2024.06.003","url":null,"abstract":"<p><p>In a healthy pancreas, pancreatic stellate cells (PaSCs) synthesize the basement membrane, which is mainly composed of type IV collagen and laminin. In chronic pancreatitis (CP), PaSCs are responsible for the production of a rigid extracellular matrix (ECM) that is mainly composed of fibronectin and type I/III collagen. Reactive oxygen species evoke the formation of the rigid ECM by PaSCs. One source of reactive oxygen species is NADPH oxidase (Nox) enzymes. Nox1 up-regulates the expression of Twist1 and matrix metalloproteinase-9 (MMP-9) in PaSCs from mice with CP. This study determined the functional relationship between Twist1 and MMP-9, and other PaSC-produced proteins, and the extent to which Twist1 regulates digestion of ECM proteins in CP. Twist1 induced the expression of MMP-9 in mouse PaSCs. The action of Twist1 was not selective to MMP-9 because Twist1 induced the expression of types I and IV collagen, fibronectin, transforming growth factor, and α-smooth muscle actin. Using luciferase assay, Twist1 in human primary PaSCs increased the expression of MMP-9 at the transcriptional level in an NF-κB dependent manner. The digestion of type I/III collagen by MMP-9 secreted by PaSCs from mice with CP depended on Twist1. Thus, Twist1 in PaSCs from mice with CP induces rigid ECM production and MMP-9 transcription in an NF-κB-dependent mechanism that selectively displays proteolytic activity toward type I/III collagen.</p>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":null,"pages":null},"PeriodicalIF":4.7,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141733317","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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American Journal of Pathology
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