Pub Date : 2026-02-11DOI: 10.1016/j.ajpath.2026.01.007
Ankit Agrawal, Stefan Thomann
Spatial profiling technologies are transforming our understanding of tissue organization by enabling high-resolution mapping of molecular features in situ. Spatial multi-omics platforms ranging from spot-based to single-cell and subcellular resolution are increasingly being integrated into pathobiological workflows, offering unprecedented insights into novel cellular states, the tissue microenvironment, cell-cell communication, drug resistance niches, and disease heterogeneity. This article discusses recent experimental and computational advances in spatial biology, highlighting how multimodal integration enables a more comprehensive understanding of tissue function and its dysregulation. The challenges and opportunities that arise in three-dimensional spatial mapping, the impact on biomarker discovery, therapeutic decision-making, and the translational implications of large-scale pathology foundation models trained on spatial omics data are explored. Finally, it's highlighted that refined biological questions, combined with artificial intelligence, can unlock the full potential of spatial omics and reshape diagnostic workflows toward more precise clinical decision-making.
{"title":"Redefining Pathobiology with Spatial Multi-Omics at the Intersection of Biology, Computation, and Histopathological Assessment.","authors":"Ankit Agrawal, Stefan Thomann","doi":"10.1016/j.ajpath.2026.01.007","DOIUrl":"10.1016/j.ajpath.2026.01.007","url":null,"abstract":"<p><p>Spatial profiling technologies are transforming our understanding of tissue organization by enabling high-resolution mapping of molecular features in situ. Spatial multi-omics platforms ranging from spot-based to single-cell and subcellular resolution are increasingly being integrated into pathobiological workflows, offering unprecedented insights into novel cellular states, the tissue microenvironment, cell-cell communication, drug resistance niches, and disease heterogeneity. This article discusses recent experimental and computational advances in spatial biology, highlighting how multimodal integration enables a more comprehensive understanding of tissue function and its dysregulation. The challenges and opportunities that arise in three-dimensional spatial mapping, the impact on biomarker discovery, therapeutic decision-making, and the translational implications of large-scale pathology foundation models trained on spatial omics data are explored. Finally, it's highlighted that refined biological questions, combined with artificial intelligence, can unlock the full potential of spatial omics and reshape diagnostic workflows toward more precise clinical decision-making.</p>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146103613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-06DOI: 10.1016/j.ajpath.2026.01.010
Dale Davis, John Hanna
Clear cell morphology is an uncommon finding in human tumors and reflects the distinctive appearance of the cytoplasm under standard histopathologic examination. Granular cell morphology appears to be a closely related phenomenon and reflects an abundant eosinophilic cytoplasm. Accumulating evidence suggests a central role for the MITF/TFE family of transcription factors in diverse clear cell and granular cell neoplasms. A principal function of these transcription factors concerns cytoplasmic organellar biogenesis: TFEB is the master regulator of lysosome biogenesis while MITF controls the biogenesis of lysosome-related organelles known as melanosomes, which are responsible for melanin pigment production. This article reviews the role of MITF/TFE pathway activation in a variety of benign and malignant tumors, with an emphasis on the diverse oncogenic mechanisms that activate this pathway and the resulting altered cell biology that contributes to the distinctive histomorphologic features.
{"title":"Central Role of MITF/TFE Family Transcription Factors in Diverse Clear and Granular Cell Tumors.","authors":"Dale Davis, John Hanna","doi":"10.1016/j.ajpath.2026.01.010","DOIUrl":"10.1016/j.ajpath.2026.01.010","url":null,"abstract":"<p><p>Clear cell morphology is an uncommon finding in human tumors and reflects the distinctive appearance of the cytoplasm under standard histopathologic examination. Granular cell morphology appears to be a closely related phenomenon and reflects an abundant eosinophilic cytoplasm. Accumulating evidence suggests a central role for the MITF/TFE family of transcription factors in diverse clear cell and granular cell neoplasms. A principal function of these transcription factors concerns cytoplasmic organellar biogenesis: TFEB is the master regulator of lysosome biogenesis while MITF controls the biogenesis of lysosome-related organelles known as melanosomes, which are responsible for melanin pigment production. This article reviews the role of MITF/TFE pathway activation in a variety of benign and malignant tumors, with an emphasis on the diverse oncogenic mechanisms that activate this pathway and the resulting altered cell biology that contributes to the distinctive histomorphologic features.</p>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146140919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Spinal muscular atrophy (SMA) is an inherited neurodegenerative disorder caused by a deficiency of the survival motor neuron (SMN) protein. Traditionally, it has been classified as a motor neuron disease. Over the past decade, however, numerous nonmotor neuronal and nonneural pathologies reported in both patients with SMA and mouse models have led to its redefinition as a systemic disorder. Although SMN protein expression outside the central nervous system is well established, it remains controversial whether its functional loss in nonneuronal cells/tissues merely represents a comorbidity or actively contributes to driving motor neuron degeneration. This review summarizes key evidence supporting the non-cell-autonomous death of motor neurons in SMA. On the basis of these lines of evidence, three potential pathways for pathologic transmission are proposed: i) neuroinflammatory and neurotoxicity signaling mediated by glial cells, ii) aberrant retrograde signaling from the neuromuscular junction, and iii) modulation of the central nervous system by peripheral factors via the circulatory system. Future studies should focus on identifying critical peripheral tissues involved in SMA pathogenesis, elucidating the molecular mechanisms by which SMN deficiency leads to dysfunction in these tissues, and characterizing key mediators that influence motor neuron survival. In the current era where SMN-enhancing therapies have significantly improved patient survival, a deeper understanding of non-cell-autonomous mechanisms, and targeting them, represents a crucial step toward achieving curative strategies for SMA.
{"title":"Non-Cell-Autonomous Mechanisms and Systemic Interactions in Spinal Muscular Atrophy.","authors":"Junjie Sun, Weitong Wang, Chengye Liu, Guicai Li, Luzhong Zhang, Lingyan Xing, Liucheng Wu","doi":"10.1016/j.ajpath.2026.01.011","DOIUrl":"10.1016/j.ajpath.2026.01.011","url":null,"abstract":"<p><p>Spinal muscular atrophy (SMA) is an inherited neurodegenerative disorder caused by a deficiency of the survival motor neuron (SMN) protein. Traditionally, it has been classified as a motor neuron disease. Over the past decade, however, numerous nonmotor neuronal and nonneural pathologies reported in both patients with SMA and mouse models have led to its redefinition as a systemic disorder. Although SMN protein expression outside the central nervous system is well established, it remains controversial whether its functional loss in nonneuronal cells/tissues merely represents a comorbidity or actively contributes to driving motor neuron degeneration. This review summarizes key evidence supporting the non-cell-autonomous death of motor neurons in SMA. On the basis of these lines of evidence, three potential pathways for pathologic transmission are proposed: i) neuroinflammatory and neurotoxicity signaling mediated by glial cells, ii) aberrant retrograde signaling from the neuromuscular junction, and iii) modulation of the central nervous system by peripheral factors via the circulatory system. Future studies should focus on identifying critical peripheral tissues involved in SMA pathogenesis, elucidating the molecular mechanisms by which SMN deficiency leads to dysfunction in these tissues, and characterizing key mediators that influence motor neuron survival. In the current era where SMN-enhancing therapies have significantly improved patient survival, a deeper understanding of non-cell-autonomous mechanisms, and targeting them, represents a crucial step toward achieving curative strategies for SMA.</p>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146140882","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-02DOI: 10.1016/j.ajpath.2026.01.005
Anthony R Sheets, Shannon M McNamee, Christine G Lian, George F Murphy
Cutaneous dermal microvascular responses are critical to common inflammatory skin conditions and effective wound healing. However, few laboratory models effectively recreate the spatially intact microenvironment essential for genesis and function of the human dermal microcirculation. Recently, stem cell-derived skin organoids (SKOs) have been developed that possess many microanatomic and cellular features of native human skin, including hair-forming epidermis and an underlying dermal layer containing endothelial-lined channels. Here, temporal dynamics of human SKO vasculogenesis are profiled and organoid responses to inflammatory and traumatic stimuli are interrogated. SKOs generated from induced pluripotent stem cells expressing endothelial-specific green fluorescent protein develop vasculogenic foci by post-differentiation day 6 that evolved into extensive microvascular networks that persisted beyond 4 months in culture. Multiplex antibody arrays provided mechanistic insight into secreted effectors supporting early events in SKO vasculogenesis. Over time, SKO microvasculature became ensheathed by mural cells producing collagen IV-rich basement membranes, whereas endothelium retained signatures of proliferative activity/immaturity. Functionally, SKOs treated with proinflammatory cytokines expressed markers of endothelial and perivascular vascular activation, with concomitant release of endogenous inflammatory mediators. Finally, wounding of SKOs via sharp dissection provided the first demonstration of angiogenic healing responses that were further augmented by exogenous vascular endothelial growth factor. Overall, this advanced human culture system represents a highly relevant model for understanding biological responses by the dermal microvasculature.
{"title":"Dermal Microvascular Responses of Human Induced Pluripotent Stem Cell-Derived Skin Organoids to Inflammation and Injury.","authors":"Anthony R Sheets, Shannon M McNamee, Christine G Lian, George F Murphy","doi":"10.1016/j.ajpath.2026.01.005","DOIUrl":"10.1016/j.ajpath.2026.01.005","url":null,"abstract":"<p><p>Cutaneous dermal microvascular responses are critical to common inflammatory skin conditions and effective wound healing. However, few laboratory models effectively recreate the spatially intact microenvironment essential for genesis and function of the human dermal microcirculation. Recently, stem cell-derived skin organoids (SKOs) have been developed that possess many microanatomic and cellular features of native human skin, including hair-forming epidermis and an underlying dermal layer containing endothelial-lined channels. Here, temporal dynamics of human SKO vasculogenesis are profiled and organoid responses to inflammatory and traumatic stimuli are interrogated. SKOs generated from induced pluripotent stem cells expressing endothelial-specific green fluorescent protein develop vasculogenic foci by post-differentiation day 6 that evolved into extensive microvascular networks that persisted beyond 4 months in culture. Multiplex antibody arrays provided mechanistic insight into secreted effectors supporting early events in SKO vasculogenesis. Over time, SKO microvasculature became ensheathed by mural cells producing collagen IV-rich basement membranes, whereas endothelium retained signatures of proliferative activity/immaturity. Functionally, SKOs treated with proinflammatory cytokines expressed markers of endothelial and perivascular vascular activation, with concomitant release of endogenous inflammatory mediators. Finally, wounding of SKOs via sharp dissection provided the first demonstration of angiogenic healing responses that were further augmented by exogenous vascular endothelial growth factor. Overall, this advanced human culture system represents a highly relevant model for understanding biological responses by the dermal microvasculature.</p>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-02DOI: 10.1016/j.ajpath.2026.01.006
Akihiro Sakai, Yuki Miyai, Yukihiro Shiraki, Ryota Ando, Nobutoshi Esaki, Tadashi Iida, Takahiro Sugie, Masahiro Shibata, Toyone Kikumori, Norikazu Masuda, Hiroyoshi Y Tanaka, Mitsunobu R Kano, Atsushi Enomoto, Shinji Mii
Recent studies have shown that cancer-associated fibroblasts (CAFs), a key component of the tumor microenvironment, are heterogeneous and can be divided into distinct subsets. Although all CAFs were believed to promote tumor progression, recent studies have identified a distinguished subset of tumor-restraining CAFs (rCAFs). It was previously demonstrated that the up-regulation of Meflin (immunoglobulin superfamily containing leucine-rich repeat) expression confers a tumor-restraining role on CAFs in pancreatic, colon, urothelial, and lung cancers. Triple-negative breast cancer (TNBC) is an aggressive type of breast cancer with a poor prognosis. In this study, it was shown that Meflin can be a candidate marker for rCAFs in TNBC. In co-culture experiments with tumor cells and fibroblasts, Meflin overexpression in fibroblasts inhibited tumor cell growth in a three-dimensional culture model and shifted their gene expression profile toward that characteristic of universal or normal fibroblasts. Meflin overexpression in fibroblasts significantly reduced the expression of the chemokine receptor ACKR3 and enhanced that of the prostaglandin synthase PTGDS. This is suggestive of the involvement of these proteins in tumor microenvironment regulation. Furthermore, Meflin deficiency reduced the area of tumor vessels in a TNBC mouse model, highlighting its role in CAF-mediated inhibition of TNBC progression and improvement of drug delivery. Accordingly, Meflin plays a role as a potential functional marker of rCAFs in TNBC.
{"title":"Increased Meflin Expression in Cancer-Associated Fibroblasts Restrains Tumor Cell Proliferation and Shapes Vessel-Rich Stroma in Triple-Negative Breast Cancer.","authors":"Akihiro Sakai, Yuki Miyai, Yukihiro Shiraki, Ryota Ando, Nobutoshi Esaki, Tadashi Iida, Takahiro Sugie, Masahiro Shibata, Toyone Kikumori, Norikazu Masuda, Hiroyoshi Y Tanaka, Mitsunobu R Kano, Atsushi Enomoto, Shinji Mii","doi":"10.1016/j.ajpath.2026.01.006","DOIUrl":"10.1016/j.ajpath.2026.01.006","url":null,"abstract":"<p><p>Recent studies have shown that cancer-associated fibroblasts (CAFs), a key component of the tumor microenvironment, are heterogeneous and can be divided into distinct subsets. Although all CAFs were believed to promote tumor progression, recent studies have identified a distinguished subset of tumor-restraining CAFs (rCAFs). It was previously demonstrated that the up-regulation of Meflin (immunoglobulin superfamily containing leucine-rich repeat) expression confers a tumor-restraining role on CAFs in pancreatic, colon, urothelial, and lung cancers. Triple-negative breast cancer (TNBC) is an aggressive type of breast cancer with a poor prognosis. In this study, it was shown that Meflin can be a candidate marker for rCAFs in TNBC. In co-culture experiments with tumor cells and fibroblasts, Meflin overexpression in fibroblasts inhibited tumor cell growth in a three-dimensional culture model and shifted their gene expression profile toward that characteristic of universal or normal fibroblasts. Meflin overexpression in fibroblasts significantly reduced the expression of the chemokine receptor ACKR3 and enhanced that of the prostaglandin synthase PTGDS. This is suggestive of the involvement of these proteins in tumor microenvironment regulation. Furthermore, Meflin deficiency reduced the area of tumor vessels in a TNBC mouse model, highlighting its role in CAF-mediated inhibition of TNBC progression and improvement of drug delivery. Accordingly, Meflin plays a role as a potential functional marker of rCAFs in TNBC.</p>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117544","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-10-16DOI: 10.1016/j.ajpath.2025.09.013
Maureen E. Haynes, Vivienne Fang, Meital Gewirtz, David P. Sullivan, William A. Muller
Gastric aspiration pneumonia involves chemical injury to the alveoli of the lungs with inflammation, tissue damage, and recruitment of polymorphonuclear leukocytes (PMNs). PMNs are also known to be involved in the production of specialized pro-resolving mediators (SPMs), small lipid molecules that contribute to the resolution of inflammation. This study aimed to identify target PMN-produced SPMs and interrogate their actions and potential use for therapeutic treatment after chemical injury. The data revealed that maresin 1 (MaR1), lipoxin A4, and 18-HEPE are produced after chemical injury in the lungs, and that exogenous treatment with these SPMs reduces the acute influx of PMNs into the airspace. In a chemical lung injury model in which neutropenic mice all die within 48 hours, treatment with MaR1 or LXA4 rescued survival of neutropenic mice to the levels of immunologically intact mice, and reduced CD11b expression, a proinflammatory marker, on recruited PMNs. Exogenous treatment with MaR1 or LXA4 reduced the concentration of proinflammatory cytokines TNF⍺, IL6, and MCP-1 in the airspace at 24 hours after injury. These data show that exogenous treatment with MaR1 or LXA4 ameliorates acute inflammation after chemical lung injury and contributes to survival of severe murine aspiration pneumonia in neutropenic animals. These data have implications for treatment of sterile lung injury in immunocompromised patients.
胃吸入性肺炎涉及肺部肺泡的化学损伤,伴有炎症、组织损伤和多形核白细胞(pmn)的募集。pmn还参与产生专门的促溶解介质(SPMs),这是一种有助于炎症消退的小脂质分子。本研究旨在确定目标pmn产生的SPMs,并探讨它们在化学损伤后的作用和潜在的治疗用途。我们的数据显示,肺化学损伤后产生Maresin 1 (MaR1; 7R, 14s -二羟基-二十二酸- 4z,8E,10E,12Z,16Z, 19z -己酸),Lipoxin A4 (LXA4, 5S,6R, 15s -三羟基- 7e,9E,11Z, 13e -二十碳四烯酸)和18-HEPE((±)-18-羟基- 5z,8Z,11Z,14Z, 16e -二十碳五烯酸),外源性处理这些SPMs可减少PMNs急性流入空气中。在化学肺损伤模型中,中性粒细胞减少小鼠在48小时内全部死亡,用MaR1或LXA4治疗使中性粒细胞减少小鼠的存活恢复到免疫完整小鼠的水平,并降低募集PMNs上促炎标志物CD11b的表达。用MaR1或LXA4外源性处理可在损伤后24小时降低空气中促炎细胞因子TNF、IL6和MCP-1的浓度。这些数据表明,用MaR1或LXA4外源性治疗可改善化学肺损伤后的急性炎症,并有助于中性粒细胞减少动物的严重小鼠吸入性肺炎的存活。这些数据对免疫功能低下患者无菌性肺损伤的治疗具有启示意义。
{"title":"Specialized Pro-Resolving Mediators MaR1 and LXA4 Resolve Inflammation During Acute Chemical Lung Injury in the Absence of Neutrophils","authors":"Maureen E. Haynes, Vivienne Fang, Meital Gewirtz, David P. Sullivan, William A. Muller","doi":"10.1016/j.ajpath.2025.09.013","DOIUrl":"10.1016/j.ajpath.2025.09.013","url":null,"abstract":"<div><div>Gastric aspiration pneumonia involves chemical injury to the alveoli of the lungs with inflammation, tissue damage, and recruitment of polymorphonuclear leukocytes (PMNs). PMNs are also known to be involved in the production of specialized pro-resolving mediators (SPMs), small lipid molecules that contribute to the resolution of inflammation. This study aimed to identify target PMN-produced SPMs and interrogate their actions and potential use for therapeutic treatment after chemical injury. The data revealed that maresin 1 (MaR1), lipoxin A<sub>4</sub>, and 18-HEPE are produced after chemical injury in the lungs, and that exogenous treatment with these SPMs reduces the acute influx of PMNs into the airspace. In a chemical lung injury model in which neutropenic mice all die within 48 hours, treatment with MaR1 or LXA<sub>4</sub> rescued survival of neutropenic mice to the levels of immunologically intact mice, and reduced CD11b expression, a proinflammatory marker, on recruited PMNs. Exogenous treatment with MaR1 or LXA<sub>4</sub> reduced the concentration of proinflammatory cytokines TNF⍺, IL6, and MCP-1 in the airspace at 24 hours after injury. These data show that exogenous treatment with MaR1 or LXA<sub>4</sub> ameliorates acute inflammation after chemical lung injury and contributes to survival of severe murine aspiration pneumonia in neutropenic animals. These data have implications for treatment of sterile lung injury in immunocompromised patients.</div></div>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":"196 2","pages":"Pages 359-368"},"PeriodicalIF":3.6,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145318084","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-11-20DOI: 10.1016/j.ajpath.2025.10.012
Jina Nanayakkara , Xiaojing Yang , Simona Damiani , Tashifa Imtiaz , Xiantao Wang , Dimitrios G. Anastasakis , Girish M. Shah , Kathrin Tyryshkin , Markus Hafner , Xiaolong Yang , Neil Renwick
Molecular regulators of variably aggressive carcinoid tumors are unknown. Since carcinoids have low expression of Yes-associated protein (YAP), it was hypothesized that low YAP expression provides a molecular advantage to carcinoids by preventing YAP from binding its partner, TEA domain transcription factor (TEAD). To test this hypothesis, constitutively active YAP and a TEAD-binding defective form of YAP were overexpressed in lung (H727) and pancreatic (BON1) carcinoid cells. It was found that active YAP overexpression inhibited neuroendocrine markers, morphology, cell proliferation, and anchorage-independent cell growth, whereas TEAD-binding defective YAP recovered these features. Through integrated chromatin immunoprecipitation and RNA sequencing analyses, it was found that YAP-TEAD binding down-regulated neuroendocrine transcription factor genes and up-regulated select transforming growth factor (TGF-β) superfamily and Notch genes related to cell growth. It was concluded that low YAP expression permits neuroendocrine differentiation and growth in carcinoid cells by preventing YAP-TEAD binding and subsequent dysregulation of gene targets. These results identify unknown molecular mechanisms in carcinoid development that may apply to the broader family of neuroendocrine cancers.
{"title":"YAP and TEAD Are Transcriptional Regulators of Neuroendocrine Differentiation and Growth in Carcinoid Cells","authors":"Jina Nanayakkara , Xiaojing Yang , Simona Damiani , Tashifa Imtiaz , Xiantao Wang , Dimitrios G. Anastasakis , Girish M. Shah , Kathrin Tyryshkin , Markus Hafner , Xiaolong Yang , Neil Renwick","doi":"10.1016/j.ajpath.2025.10.012","DOIUrl":"10.1016/j.ajpath.2025.10.012","url":null,"abstract":"<div><div>Molecular regulators of variably aggressive carcinoid tumors are unknown. Since carcinoids have low expression of Yes-associated protein (YAP), it was hypothesized that low YAP expression provides a molecular advantage to carcinoids by preventing YAP from binding its partner, TEA domain transcription factor (TEAD). To test this hypothesis, constitutively active YAP and a TEAD-binding defective form of YAP were overexpressed in lung (H727) and pancreatic (BON1) carcinoid cells. It was found that active YAP overexpression inhibited neuroendocrine markers, morphology, cell proliferation, and anchorage-independent cell growth, whereas TEAD-binding defective YAP recovered these features. Through integrated chromatin immunoprecipitation and RNA sequencing analyses, it was found that YAP-TEAD binding down-regulated neuroendocrine transcription factor genes and up-regulated select transforming growth factor (TGF-β) superfamily and Notch genes related to cell growth. It was concluded that low YAP expression permits neuroendocrine differentiation and growth in carcinoid cells by preventing YAP-TEAD binding and subsequent dysregulation of gene targets. These results identify unknown molecular mechanisms in carcinoid development that may apply to the broader family of neuroendocrine cancers.</div></div>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":"196 2","pages":"Pages 345-358"},"PeriodicalIF":3.6,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145581804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-11-24DOI: 10.1016/j.ajpath.2025.11.001
Qiufen Xun, Qing Yang, Guofeng Zhu, Wei Wang
Pulmonary arterial hypertension is a disease characterized by abnormally high pulmonary arterial blood pressures caused by a variety of heterogeneous diseases and different pathogenetic mechanisms. This study establishes a hypoxic pulmonary hypertension (HPH) mouse model, revealing cullin 2 (CUL2)'s critical role in disease pathogenesis. Hypoxia up-regulates CUL2 in HPH lungs, whereas CUL2 knockdown alleviates the Warburg effect, right ventricular dysfunction, and pulmonary fibrosis. In vitro, CUL2 depletion suppresses proliferation, adhesion, and tube formation in hypoxic pulmonary arterial endothelial cells. Mechanistically, CUL2 enhances glycolysis by up-regulating lactate dehydrogenase A (LDHA)/phosphofructokinase, liver type (PFKL), and their overexpression rescues CUL2-silencing effects. Furthermore, hypoxia-induced proline hydroxylase 2 (PHD2) down-regulation stabilizes hypoxia-inducible factor-1α (HIF-1α), which directly binds the CUL2 promoter to enhance its expression. These findings unveil a novel PHD2/HIF-1α/CUL2 axis that promotes vascular remodeling via glycolysis, offering a potential therapeutic target for pulmonary arterial hypertension. In conclusion, this work demonstrated that under hypoxia condition, PHD2-mediated hydroxylation of HIF-1α was blocked and the expression of HIF-1α was elevated in HPH mice. High levels of HIF-1α elevated the transcription and expression of CUL2 and increased the Warburg effect, thereby accelerating HPH development.
{"title":"Cullin 2 Elevates the Warburg Effect to Accelerate the Development of Hypoxic Pulmonary Hypertension","authors":"Qiufen Xun, Qing Yang, Guofeng Zhu, Wei Wang","doi":"10.1016/j.ajpath.2025.11.001","DOIUrl":"10.1016/j.ajpath.2025.11.001","url":null,"abstract":"<div><div>Pulmonary arterial hypertension is a disease characterized by abnormally high pulmonary arterial blood pressures caused by a variety of heterogeneous diseases and different pathogenetic mechanisms. This study establishes a hypoxic pulmonary hypertension (HPH) mouse model, revealing cullin 2 (CUL2)'s critical role in disease pathogenesis. Hypoxia up-regulates CUL2 in HPH lungs, whereas CUL2 knockdown alleviates the Warburg effect, right ventricular dysfunction, and pulmonary fibrosis. <em>In vitro</em>, CUL2 depletion suppresses proliferation, adhesion, and tube formation in hypoxic pulmonary arterial endothelial cells. Mechanistically, CUL2 enhances glycolysis by up-regulating lactate dehydrogenase A (LDHA)/phosphofructokinase, liver type (PFKL), and their overexpression rescues CUL2-silencing effects. Furthermore, hypoxia-induced proline hydroxylase 2 (PHD2) down-regulation stabilizes hypoxia-inducible factor-1α (HIF-1α), which directly binds the <em>CUL2</em> promoter to enhance its expression. These findings unveil a novel PHD2/HIF-1α/CUL2 axis that promotes vascular remodeling via glycolysis, offering a potential therapeutic target for pulmonary arterial hypertension. In conclusion, this work demonstrated that under hypoxia condition, PHD2-mediated hydroxylation of HIF-1α was blocked and the expression of HIF-1α was elevated in HPH mice. High levels of HIF-1α elevated the transcription and expression of CUL2 and increased the Warburg effect, thereby accelerating HPH development.</div></div>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":"196 2","pages":"Pages 369-387"},"PeriodicalIF":3.6,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145627711","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-10-16DOI: 10.1016/j.ajpath.2025.09.016
Shuai Jiang , Christina Robinson , Joseph Anderson , William Hisey , Lynn Butterly , Arief Suriawinata , Saeed Hassanpour
Colonoscopy screening effectively identifies and removes polyps before they progress to colorectal cancer (CRC), but current follow-up guidelines rely primarily on histopathologic features, overlooking other important CRC risk factors. Variability in polyp characterization among pathologists also hinders consistent surveillance decisions. Advances in digital pathology and deep learning enable the integration of pathology slides and medical records for more accurate progression risk prediction. Using data from the New Hampshire Colonoscopy Registry, including longitudinal follow-up, a transformer-based model for histopathology image analysis was adapted to predict 5-year progression risk. Multi-modal fusion strategies were further explored to combine clinical records with deep learning–derived image features. Training the model to predict intermediate clinical variables improved 5-year progression risk prediction [area under the receiver-operating characteristic curve (AUC), 0.630] compared with direct prediction (AUC, 0.615; P = 0.013). Integrating whole-slide imaging–based model predictions with nonimaging features further improved performance (AUC, 0.672), significantly outperforming the nonimaging-only approach (AUC, 0.666; P = 0.002). These results highlight the value of integrating diverse data modalities with computational methods to enhance progression risk stratification.
结肠镜筛查可以有效地在息肉发展为结直肠癌(CRC)之前识别并切除息肉,但目前的随访指南主要依赖于组织病理学特征,忽略了其他重要的CRC危险因素。病理学家之间息肉特征的差异也阻碍了一致的监测决策。数字病理学和深度学习的进步使病理切片和医疗记录的整合能够更准确地预测进展风险。利用新罕布什尔结肠镜登记中心的数据,包括纵向随访,采用基于变压器的组织病理学图像分析模型来预测5年进展风险。进一步探索多模式融合策略,将临床记录与深度学习衍生的图像特征相结合。与直接预测(AUC = 0.615, p = 0.013)相比,训练模型预测中间临床变量可提高5年进展风险预测(AUC = 0.630)。将基于wsi的模型预测与非成像特征相结合进一步提高了性能(AUC = 0.672),显著优于仅非成像方法(AUC = 0.666, p = 0.002)。这些结果强调了将不同数据模式与计算方法相结合以增强进展风险分层的价值。
{"title":"Improving Colorectal Cancer Screening and Risk Assessment through Predictive Modeling on Medical Images and Records","authors":"Shuai Jiang , Christina Robinson , Joseph Anderson , William Hisey , Lynn Butterly , Arief Suriawinata , Saeed Hassanpour","doi":"10.1016/j.ajpath.2025.09.016","DOIUrl":"10.1016/j.ajpath.2025.09.016","url":null,"abstract":"<div><div>Colonoscopy screening effectively identifies and removes polyps before they progress to colorectal cancer (CRC), but current follow-up guidelines rely primarily on histopathologic features, overlooking other important CRC risk factors. Variability in polyp characterization among pathologists also hinders consistent surveillance decisions. Advances in digital pathology and deep learning enable the integration of pathology slides and medical records for more accurate progression risk prediction. Using data from the New Hampshire Colonoscopy Registry, including longitudinal follow-up, a transformer-based model for histopathology image analysis was adapted to predict 5-year progression risk. Multi-modal fusion strategies were further explored to combine clinical records with deep learning–derived image features. Training the model to predict intermediate clinical variables improved 5-year progression risk prediction [area under the receiver-operating characteristic curve (AUC), 0.630] compared with direct prediction (AUC, 0.615; <em>P</em> = 0.013). Integrating whole-slide imaging–based model predictions with nonimaging features further improved performance (AUC, 0.672), significantly outperforming the nonimaging-only approach (AUC, 0.666; <em>P</em> = 0.002). These results highlight the value of integrating diverse data modalities with computational methods to enhance progression risk stratification.</div></div>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":"196 2","pages":"Pages 493-504"},"PeriodicalIF":3.6,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145318046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-09-30DOI: 10.1016/j.ajpath.2025.09.007
Hyemin Seong , Chieun Song , Mingyo Kim , Woong-Sun Yoo , Mee-Young Choi , Réka Dorottya Varga , Yong-Ho Choe , Bina Lee , Seung Pil Yun , Young-Sik Yoo , Youngsub Eom , Choun-Ki Joo , Jinsung Yang , Seong-Jae Kim
Corneal opacity resulting from corneal injury is a leading cause of blindness. The interaction of extracellular matrix (ECM) proteins, cytokines, and immune cells induces corneal opacity after corneal injury. Periostin, which is secreted into the ECM, is involved in wound healing and is associated with immune cell infiltration. The function of periostin in corneal wound healing and in the development of corneal opacity was investigated. Wild-type (WT) and Postn knockout (KO) mice underwent central corneal incision. Periostin expression level was significantly increased after the incision in WT mice, correlating with higher levels of wound healing markers, such as fibronectin and α-smooth muscle actin, and increased corneal opacity. However, Postn KO mice showed reduced corneal opacity and immune cell infiltration, particularly from myeloid lineage cells after incision. In addition, pro-inflammatory cytokine levels (IL-1β, IL-6, and C1q) were not significantly changed in Postn KO mice. The results suggest that periostin deletion impairs corneal wound healing and reduces opacity by regulating cytokine expression and immune cell recruitment. The findings indicate that periostin can be a potential therapeutic target for reducing corneal opacity.
{"title":"Periostin Deletion Reduces Corneal Opacity and the Infiltration of Immune Cells","authors":"Hyemin Seong , Chieun Song , Mingyo Kim , Woong-Sun Yoo , Mee-Young Choi , Réka Dorottya Varga , Yong-Ho Choe , Bina Lee , Seung Pil Yun , Young-Sik Yoo , Youngsub Eom , Choun-Ki Joo , Jinsung Yang , Seong-Jae Kim","doi":"10.1016/j.ajpath.2025.09.007","DOIUrl":"10.1016/j.ajpath.2025.09.007","url":null,"abstract":"<div><div>Corneal opacity resulting from corneal injury is a leading cause of blindness. The interaction of extracellular matrix (ECM) proteins, cytokines, and immune cells induces corneal opacity after corneal injury. Periostin, which is secreted into the ECM, is involved in wound healing and is associated with immune cell infiltration. The function of periostin in corneal wound healing and in the development of corneal opacity was investigated. Wild-type (WT) and <em>Postn</em> knockout (KO) mice underwent central corneal incision. Periostin expression level was significantly increased after the incision in WT mice, correlating with higher levels of wound healing markers, such as fibronectin and α-smooth muscle actin, and increased corneal opacity. However, <em>Postn</em> KO mice showed reduced corneal opacity and immune cell infiltration, particularly from myeloid lineage cells after incision. In addition, pro-inflammatory cytokine levels (IL-1β, IL-6, and C1q) were not significantly changed in <em>Postn</em> KO mice. The results suggest that periostin deletion impairs corneal wound healing and reduces opacity by regulating cytokine expression and immune cell recruitment. The findings indicate that periostin can be a potential therapeutic target for reducing corneal opacity.</div></div>","PeriodicalId":7623,"journal":{"name":"American Journal of Pathology","volume":"196 2","pages":"Pages 550-561"},"PeriodicalIF":3.6,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145211317","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}