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Sequential Patching Lattice for Image Classification and Enquiry SPLICE - 简化数字病理图像处理。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.007
Areej Alsaafin, Peyman Nejat, Abubakr Shafique, Jibran Khan, Saghir Alfasly, Ghazal Alabtah, Hamid R. Tizhoosh
Digital pathology and the integration of artificial intelligence (AI) models have revolutionized histopathology, opening new opportunities. With the increasing availability of whole-slide images (WSIs), demand is growing for efficient retrieval, processing, and analysis of relevant images from vast biomedical archives. However, processing WSIs presents challenges due to their large size and content complexity. Full computer digestion of WSIs is impractical, and processing all patches individually is prohibitively expensive. In this article, we propose an unsupervised patching algorithm, Sequential Patching Lattice for Image Classification and Enquiry (SPLICE). This novel approach condenses a histopathology WSI into a compact set of representative patches, forming a collage of WSI while minimizing redundancy. SPLICE prioritizes patch quality and uniqueness by sequentially analyzing a WSI and selecting nonredundant representative features. In search and match applications, SPLICE showed improved accuracy, reduced computation time, and storage requirements compared with existing state-of-the-art methods. As an unsupervised method, SPLICE effectively reduced storage requirements for representing tissue images by 50%. This reduction can enable numerous algorithms in computational pathology to operate much more efficiently, paving the way for accelerated adoption of digital pathology.
数字病理学和人工智能(AI)模型的整合彻底改变了组织病理学,带来了新的机遇。随着整张切片图像(WSI)的可用性不断提高,从庞大的生物医学档案中高效检索、处理和分析相关图像的需求也日益增长。然而,由于 WSIs 体积庞大、内容复杂,处理 WSIs 是一项挑战。完全用计算机消化 WSI 是不切实际的,而单独处理所有补丁又过于昂贵。在本文中,我们提出了一种无监督修补算法--用于图像分类和查询的序列修补网格(SPLICE)。这种新方法将组织病理学 WSI 浓缩为一组紧凑的代表性补丁,形成 WSI 的 "拼贴",同时最大限度地减少冗余。SPLICE 通过顺序分析 WSI 并选择非冗余的代表性特征,优先考虑斑块的质量和独特性。我们对 SPLICE 的搜索和匹配应用进行了评估,结果表明,与现有的先进方法相比,SPLICE 提高了准确性,减少了计算时间和存储要求。作为一种无监督方法,SPLICE 能有效地将表示组织图像的存储要求降低 50%。这种减少使计算病理学中的许多算法能更有效地运行,为加快数字病理学的应用铺平了道路。
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引用次数: 0
Single-Nucleus RNA Sequencing Reveals Loss of Distal Convoluted Tubule 1 Renal Tubules in HIV Viral Protein R Transgenic Mice 单核 RNA 测序揭示了 HIV Vpr 转基因小鼠肾小管 DCT1 的缺失。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.006
Khun Zaw Latt , Teruhiko Yoshida , Shashi Shrivastav , Amin Abedini , Jeff M. Reece , Zeguo Sun , Hewang Lee , Koji Okamoto , Pradeep Dagur , Yu Ishimoto , Jurgen Heymann , Yongmei Zhao , Joon-Yong Chung , Stephen Hewitt , Pedro A. Jose , Kyung Lee , John Cijiang He , Cheryl A. Winkler , Mark A. Knepper , Tomoshige Kino , Jeffrey B. Kopp
Although hyponatremia and salt wasting are common in patients with HIV/AIDS, the understanding of their contributing factors is limited. HIV viral protein R (Vpr) contributes to HIV-associated nephropathy. To investigate the effects of Vpr on the distal tubules and on the expression level of the Slc12a3 gene, encoding the sodium-chloride cotransporter (which is responsible for sodium reabsorption in distal nephron segments), single-nucleus RNA sequencing was performed on kidney cortices from three wild-type (WT) and three Vpr transgenic (Vpr Tg) mice. The percentage of distal convoluted tubule (DCT) cells was significantly lower in Vpr Tg mice compared with WT mice (P < 0.05); in Vpr Tg mice, Slc12a3 expression was not significantly different in DCT cells. The Pvalb+ DCT1 subcluster had fewer cells in Vpr Tg mice compared with those in WT mice (P < 0.01). Immunohistochemistry revealed fewer Slc12a3+ Pvalb+ DCT1 segments in Vpr Tg mice. Differential gene expression analysis between Vpr Tg and WT samples in the DCT cluster showed down-regulation of the Ier3 gene, which is an inhibitor of apoptosis. The in vitro knockdown of Ier3 by siRNA transfection induced apoptosis in mouse DCT cells. These observations suggest that the salt-wasting effect of Vpr in Vpr Tg mice is likely mediated by Ier3 down-regulation in DCT1 cells and loss of Slc12a3+ Pvalb+ DCT1 segments.
低钠血症和盐丢失是艾滋病毒/艾滋病患者的常见病,但人们对其诱因的了解却很有限。艾滋病毒病毒蛋白 R(Vpr)是导致艾滋病毒相关性肾病的原因之一。为了研究 Vpr 对远端肾小管的影响以及对编码 Na-Cl 共转运体(负责远端肾小管钠重吸收)的 Slc12a3 基因表达水平的影响,研究人员对三只野生型(WT)和三只 Vpr 转基因(Vpr Tg)小鼠的肾皮质进行了单核 RNA 测序。结果表明,与 WT 小鼠相比,Vpr Tg 小鼠远端曲小管(DCT)细胞的百分比明显降低(P < 0.05),而在 Vpr Tg 小鼠中,DCT 细胞中 Slc12a3 的表达无明显差异。与 WT 小鼠相比,Vpr Tg 小鼠中 Pvalb+ DCT1 亚簇细胞较少(P < 0.01)。免疫组化显示,Vpr Tg 小鼠的 Slc12a3+Pvalb+ DCT1 区段较少。Vpr Tg 和 WT 在 DCT 簇中的差异基因表达分析表明,Ier3 基因下调,而 Ier3 是一种细胞凋亡抑制因子。通过 siRNA 转染体外敲除 Ier3 可诱导小鼠 DCT 细胞凋亡。这些观察结果表明,Vpr对Vpr Tg小鼠的盐耗效应可能是由DCT1细胞中的Ier3下调和Slc12a3+Pvalb+ DCT1区段的缺失介导的。
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引用次数: 0
The Role of Twist1 in Chronic Pancreatitis–Associated Pancreatic Stellate Cells Twist1 在慢性胰腺炎相关胰腺星状细胞中的作用
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-18 DOI: 10.1016/j.ajpath.2024.06.003
Emma Geister , Dalton Ard , Heer Patel , Alyssa Findley , Godfrey DeSouza , Lyndsay Martin , Henry Knox , Natasha Gavara , Aurelia Lugea , Maria Eugenia Sabbatini
In healthy pancreas, pancreatic stellate cells (PaSCs) synthesize the basement membrane, which is mainly composed of type IV collagen and laminin. In chronic pancreatitis (CP), PaSCs are responsible for the production of a rigid extracellular matrix (ECM) that is mainly composed of fibronectin and type I/III collagen. Reactive oxygen species evoke the formation of the rigid ECM by PaSCs. One source of reactive oxygen species is NADPH oxidase (Nox) enzymes. Nox1 up-regulates the expression of Twist1 and matrix metalloproteinase-9 (MMP-9) in PaSCs from mice with CP. This study determined the functional relationship between Twist1 and MMP-9, and other PaSC-produced proteins, and the extent to which Twist1 regulates digestion of ECM proteins in CP. Twist1 induced the expression of MMP-9 in mouse PaSCs. The action of Twist1 was not selective to MMP-9 because Twist1 induced the expression of types I and IV collagen, fibronectin, transforming growth factor, and α-smooth muscle actin. Luciferase assay indicated that Twist1 in human primary PaSCs increased the expression of MMP-9 at the transcriptional level in an NF-κB dependent manner. The digestion of type I/III collagen by MMP-9 secreted by PaSCs from mice with CP depended on Twist1. Thus, Twist1 in PaSCs from mice with CP induced rigid ECM production and MMP-9 transcription in an NF-κB–dependent mechanism that selectively displayed proteolytic activity toward type I/III collagen.
在健康的胰腺中,胰腺星状细胞(PaSCs)合成基底膜,基底膜主要由胶原蛋白 IV 和层粘连蛋白组成。在慢性胰腺炎(CP)中,胰腺星状细胞负责制造刚性细胞外基质(ECM),该基质主要由纤维连接蛋白和胶原 I/III 组成。活性氧(ROS)可诱导肝细胞形成坚硬的细胞外基质(ECM)。ROS 的来源之一是 NADPH 氧化酶(Nox)。Nox1 能上调 CP 小鼠 PaSCs 中 Twist1 和基质金属蛋白酶(MMP)9 的表达。在此,我们确定了 1)Twist1 和 MMP-9 以及 PaSC 产生的其他蛋白质之间的功能关系;以及 2)Twist1 在多大程度上调节了 CP 中 ECM 蛋白的消化。Twist1 可诱导 mPaSCs 中 MMP-9 的表达。Twist1 的作用并不局限于 MMP-9,因为 Twist1 还能诱导胶原 I、胶原 IV、纤连蛋白、TGF-β 和 αSMA 的表达。利用荧光素酶试验,Twist1 在 hPaSCs 中以 NF-ĸB 依赖性方式在转录水平上增加了 MMP-9 的表达。CP 小鼠的 PaSCs 分泌的 MMP-9 对胶原 I/III 的消化依赖于 Twist1。因此,CP 小鼠 PaSCs 中的 Twist1 通过 NF-ĸB 依赖性机制诱导产生刚性 ECM 并转录 MMP-9,MMP-9 选择性地对胶原 I/III 具有蛋白水解活性。
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引用次数: 0
This Month in AJP 本月 AJP。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-07-06 DOI: 10.1016/j.ajpath.2024.07.001
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引用次数: 0
A Multiscale Connected UNet for the Segmentation of Lung Cancer Cells in Pathology Sections Stained Using Rapid On-Site Cytopathological Evaluation CUNet3+:用于现场快速细胞病理学评估的病理切片染色中肺癌细胞分段的多尺度连接 UNet。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-06-17 DOI: 10.1016/j.ajpath.2024.05.011

Lung cancer is an increasingly serious health problem worldwide, and early detection and diagnosis are crucial for successful treatment. With the development of artificial intelligence and the growth of data volume, machine learning techniques can play a significant role in improving the accuracy of early detection in lung cancer. This study proposes a deep learning-based segmentation algorithm for rapid on-site cytopathological evaluation (ROSE) to enhance the diagnostic efficiency of endobronchial ultrasound-guided transbronchial needle aspiration biopsy (EBUS-TBNA) during surgery. By utilizing the CUNet3+ network model, cell clusters, including cancer cell clusters, can be accurately segmented in ROSE-stained pathological sections. The model demonstrated high accuracy, with an F1-score of 0.9604, recall of 0.9609, precision of 0.9654, and accuracy of 0.9834 on the internal testing data set. It also achieved an area under the receiver-operating characteristic curve of 0.9972 for cancer identification. The proposed algorithm saved time for on-site diagnosis, improved EBUS-TBNA efficiency, and outperformed classical segmentation algorithms in accurately identifying lung cancer cell clusters in ROSE-stained images. It effectively reduced over-segmentation, decreased network parameters, and enhanced computational efficiency, making it suitable for real-time patient evaluation during surgical procedures.

肺癌是全球日益严重的健康问题,早期发现和诊断是成功治疗的关键。随着人工智能的发展和数据量的增长,机器学习技术在提高肺癌早期检测的准确性方面可以发挥重要作用。本研究提出了一种基于深度学习的现场细胞病理学快速评估(ROSE)分割算法,以提高手术中支气管内超声引导下经支气管针吸活检(EBUS-TBNA)的诊断效率。通过利用 CUNet3+ 网络模型,可以在 ROSE 染色的病理切片中准确分割细胞群,包括癌细胞群。该模型具有很高的准确性,在内部测试数据集上的 F1 分数为 0.9604,召回率为 0.9609,精确度为 0.9654,准确度为 0.9834。癌症识别的 AUC 也达到了 0.9972。该算法节省了现场诊断的时间,提高了 EBUS-TBNA 的效率,在准确识别 ROSE 染色图像中的肺癌细胞簇方面优于传统的分割算法。它有效地减少了过度分割,降低了网络参数,提高了计算效率,适用于手术过程中对病人的实时评估。
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引用次数: 0
Macrophage Extracellular Traps Suppress Particulate Matter–Induced Airway Inflammation 巨噬细胞胞外捕获器可抑制颗粒物诱发的气道炎症。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-06-17 DOI: 10.1016/j.ajpath.2024.05.008

Accumulating evidence has substantiated the potential of ambient particulate matter (PM) to elicit detrimental health consequences in the respiratory system, notably airway inflammation. Macrophages, a pivotal component of the innate immune system, assume a crucial function in responding to exogenous agents. However, the roles and detailed mechanisms in regulating PM-induced airway inflammation remain unclear. The current study revealed that PM had the ability to stimulate the formation of macrophage extracellular traps (METs) both in vitro and in vivo. This effect was dependent on peptidylarginine deiminase type 4 (PAD4)–mediated histone citrullination. Additionally, reactive oxygen species were involved in the formation of PM-induced METs, in parallel with PAD4. Genetic deletion of PAD4 in macrophages resulted in an up-regulation of inflammatory cytokine expression. Moreover, mice with PAD4-specific knockout in myeloid cells exhibited exacerbated PM-induced airway inflammation. Mechanistically, inhibition of METs suppressed the phagocytic ability in macrophages, leading to airway epithelial injuries and an aggravated PM-induced airway inflammation. The present study demonstrates that METs play a crucial role in promoting the phagocytosis and clearance of PM by macrophages, thereby suppressing airway inflammation. Furthermore, it suggests that activation of METs may represent a novel therapeutic strategy for PM-related airway disorders.

越来越多的证据证明,环境颗粒物(PM)有可能对呼吸系统造成有害健康的后果,尤其是气道炎症。巨噬细胞是先天性免疫系统的重要组成部分,在对外源物质做出反应时发挥着关键作用。然而,调节 PM 诱导的气道炎症的作用和详细机制仍不清楚。我们的研究发现,可吸入颗粒物能够在体外和体内刺激巨噬细胞胞外陷阱(MET)的形成。这种作用依赖于 PAD4 介导的组蛋白瓜氨酸化。此外,还发现活性氧与 PAD4 同时参与了 PM 诱导的 MET 的形成。在巨噬细胞中遗传性删除 PAD4 会导致炎症细胞因子表达上调。此外,在骨髓细胞中特异性敲除 PAD4 的小鼠表现出 PM 诱导的气道炎症加剧。从机理上讲,抑制 METs 可抑制巨噬细胞的吞噬能力,导致气道上皮损伤和 PM 诱导的气道炎症加重。本研究表明,METs 在促进巨噬细胞吞噬和清除 PM,从而抑制气道炎症方面起着至关重要的作用。此外,研究还表明,激活 METs 可能是治疗 PM 相关气道疾病的一种新策略。
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引用次数: 0
Bifidobacterium bifidum Strain BB1 Inhibits Tumor Necrosis Factor-α–Induced Increase in Intestinal Epithelial Tight Junction Permeability via Toll-Like Receptor-2/Toll-Like Receptor-6 Receptor Complex–Dependent Stimulation of Peroxisome Proliferator-Activated Receptor γ and Suppression of NF-κB p65 双歧杆菌 BB1 菌株通过 TLR-2/TLR-6 受体复合物对 PPAR-γ 的依赖性刺激和对 NF-kB p65 的抑制,抑制 TNF-α 诱导的肠上皮紧密连接通透性增加
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-06-15 DOI: 10.1016/j.ajpath.2024.05.012

Bifidobacterium bifidum strain BB1 causes a strain-specific enhancement in intestinal epithelial tight junction (TJ) barrier. Tumor necrosis factor (TNF)-α induces an increase in intestinal epithelial TJ permeability and promotes intestinal inflammation. The major purpose of this study was to delineate the protective effect of BB1 against the TNF-α–induced increase in intestinal TJ permeability and to unravel the intracellular mechanisms involved. TNF-α produces an increase in intestinal epithelial TJ permeability in Caco-2 monolayers and in mice. Herein, the addition of BB1 inhibited the TNF-α increase in Caco-2 intestinal TJ permeability and mouse intestinal permeability in a strain-specific manner. BB1 inhibited the TNF-α–induced increase in intestinal TJ permeability by interfering with TNF-α–induced enterocyte NF-κB p50/p65 and myosin light chain kinase (MLCK) gene activation. The BB1 protective effect against the TNF-α–induced increase in intestinal permeability was mediated by toll-like receptor-2/toll-like receptor-6 heterodimer complex activation of peroxisome proliferator-activated receptor γ (PPAR-γ) and PPAR-γ pathway inhibition of TNF-α–induced inhibitory kappa B kinase α (IKK-α) activation, which, in turn, resulted in a step-wise inhibition of NF-κB p50/p65, MLCK gene, MLCK kinase activity, and MLCK-induced opening of the TJ barrier. In conclusion, these studies unraveled novel intracellular mechanisms of BB1 protection against the TNF-α–induced increase in intestinal TJ permeability. The current data show that BB1 protects against the TNF-α–induced increase in intestinal epithelial TJ permeability via a PPAR-γ–dependent inhibition of NF-κB p50/p65 and MLCK gene activation.

双歧杆菌 BB1 菌株能特异性地增强肠上皮细胞紧密连接(TJ)屏障。肿瘤坏死因子(TNF)-α会诱导肠上皮TJ通透性增加并促进肠道炎症。本研究的主要目的是阐明 BB1 对 TNF-α 诱导的肠 TJ 通透性增加的保护作用,并揭示其中的细胞内机制。TNF-α 会导致 Caco-2 单层膜和小鼠肠上皮 TJ 通透性增加。在本文中,添加 BB1 以菌株特异性的方式抑制了 TNF-α 在 Caco-2 肠 TJ 通透性和小鼠肠通透性中的增加。BB1通过干扰TNF-α诱导的肠细胞NF-κB p50/p65和肌球蛋白轻链激酶(MLCK)基因活化,抑制了TNF-α诱导的肠TJ通透性增加。BB1对TNF-α诱导的肠道渗透性增加的保护作用是由toll样受体-2/toll样受体-6异二聚体复合物激活过氧化物酶体增殖激活受体γ(PPAR-γ)和PPAR-γ通路抑制TNF-α诱导的抑制性卡巴B激酶α(IKK-α)激活介导的、这反过来又导致了对 NF-κB p50/p65、MLCK 基因、MLCK 激酶活性和 MLCK 诱导的 TJ 屏障开放的逐步抑制。总之,这些研究揭示了 BB1 对 TNF-α 诱导的肠 TJ 通透性增加的保护作用的新细胞内机制。目前的数据显示,BB1 通过 PPAR-γ 依赖性抑制 NF-κB p50/p65 和 MLCK 基因活化,防止 TNF-α 诱导的肠上皮 TJ 通透性增加。
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引用次数: 0
Local Tetanus Begins with a Neuromuscular Junction Paralysis around the Site of Tetanus Neurotoxin Release due to Cleavage of the Vesicle-Associated Membrane Protein 局部破伤风始于破伤风神经毒素释放部位周围与 VAMP 分裂相关的神经肌肉接头麻痹
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-06-15 DOI: 10.1016/j.ajpath.2024.05.009

Local tetanus develops when limited amounts of tetanus neurotoxin (TeNT) are released by Clostridium tetani generated from spores inside a necrotic wound. Within days, a spastic paralysis restricted to the muscles of the affected anatomical area develops. This paralysis follows the retrograde transport of TeNT inside the axons of motoneurons and its uptake by inhibitory interneurons with cleavage of a vesicle-associated membrane protein required for neurotransmitter release. Consequently, incontrollable excitation of motoneurons causes contractures of innervated muscles and leads to local spastic paralysis. Here, the initial events occurring close to the site of TeNT release were investigated in a mouse model of local tetanus. A peripheral flaccid paralysis was found to occur, before or concurrent to the spastic paralysis. At variance from the confined TeNT proteolytic activity taking place within motor neuron terminals, central protein cleavage was detected within inhibitory interneurons controlling motor neuron efferents innervating muscle groups distant from the site of TeNT release. These results indicate peripheral activity of TeNT in tetanus and explains why the spastic paralysis observed in local tetanus, although confined to single limbs, generally affects multiple muscles. The initial TeNT neuroparalytic activity can be detected by measuring the compound muscle action potential, providing a very early diagnosis and therapy, thus preventing the ensuing life-threatening generalized tetanus.

当破伤风梭菌从坏死伤口内的孢子中释放出有限数量的破伤风神经毒素(TeNT)时,就会引发局部破伤风。数天内,受影响解剖区域的肌肉会出现痉挛性瘫痪。这种瘫痪是由于 TeNT 在运动神经元轴突内逆向运输,并被抑制性中间神经元吸收,同时神经递质释放所需的囊泡相关膜蛋白被裂解。因此,运动神经元无法控制的兴奋会引起受支配肌肉的挛缩,导致局部痉挛性瘫痪。在此,我们在局部破伤风小鼠模型中研究了发生在 TeNT 释放点附近的初始事件。研究发现,在痉挛性瘫痪之前或同时,会出现外周弛缓性瘫痪。与发生在运动神经元末端的局限性 TeNT 蛋白水解活动不同,在控制运动神经元传出的抑制性中间神经元中检测到了中心蛋白裂解,这些抑制性中间神经元支配着远离 TeNT 释放部位的肌肉群。这些结果表明了 TeNT 在破伤风中的外周活性,并解释了为什么局部破伤风中观察到的痉挛性瘫痪虽然仅限于单肢,但通常会影响多块肌肉。最初的 TeNT 神经麻痹活动可通过测量复合肌肉动作电位检测到,从而提供了非常早期的诊断和治疗,从而避免了随后危及生命的全身性破伤风。
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引用次数: 0
Platelets in Thrombosis and Atherosclerosis 血小板在血栓形成和动脉粥样硬化中的作用:一把双刃剑。
IF 4.7 2区 医学 Q1 PATHOLOGY Pub Date : 2024-06-15 DOI: 10.1016/j.ajpath.2024.05.010

This review focuses on the dual role of platelets in atherosclerosis and thrombosis, exploring their involvement in inflammation, angiogenesis, and plaque formation, as well as their hemostatic and prothrombotic functions. Beyond their thrombotic functions, platelets engage in complex interactions with diverse cell types, influencing disease resolution and progression. The contribution of platelet degranulation helps in the formation of atheromatous plaque, whereas the reciprocal interaction with monocytes adds complexity. Alterations in platelet membrane receptors and signaling cascades contribute to advanced atherosclerosis, culminating in atherothrombotic events. Understanding these multifaceted roles of platelets will lead to the development of targeted antiplatelet strategies for effective cardiovascular disease prevention and treatment. Understanding platelet functions in atherosclerosis and atherothrombosis at different stages of disease will be critical for designing targeted treatments and medications to prevent or cure the disease Through this understanding, platelets can be targeted at specific times in the atherosclerosis process, possibly preventing the development of atherothrombosis.

本综述侧重于血小板在动脉粥样硬化和血栓形成中的双重作用,探讨它们在炎症、血管生成和斑块形成中的参与,以及它们的止血和促血栓形成功能。除了血栓形成功能外,血小板还与不同类型的细胞发生复杂的相互作用,影响疾病的缓解和发展。血小板脱颗粒有助于动脉粥样斑块的形成,而与单核细胞的相互影响则增加了其复杂性。血小板膜受体和信号级联的改变会导致晚期动脉粥样硬化,最终引发动脉粥样硬化血栓事件。了解血小板的这些多方面作用将有助于开发有针对性的抗血小板策略,从而有效预防和治疗心血管疾病。了解血小板在动脉粥样硬化和动脉粥样硬化栓塞症不同阶段的功能,对于设计有针对性的治疗方法和药物来预防或治疗疾病至关重要。
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引用次数: 0
Identification of HTRA4 as a Transcriptional Target of p63 in Trophoblast 确定 HTRA4 是滋养层母细胞中 p63 的转录靶标
IF 6 2区 医学 Q1 PATHOLOGY Pub Date : 2024-06-14 DOI: 10.1016/j.ajpath.2024.03.011
Mary E. Donohoe , Robert Morey , Yingchun Li , Donald Pizzo , Sampada Kallol , Hee-Young Cho , Francesca Soncin , Mana M. Parast

The placenta plays a crucial role in pregnancy success. ΔNp63α (p63), a transcription factor from the TP53 family, is highly expressed in villous cytotrophoblasts (CTBs), the epithelial stem cells of the human placenta, and is involved in CTB maintenance and differentiation. We examined the mechanisms of action of p63 by identifying its downstream targets. Gene expression changes were evaluated following overexpression and knockdown of p63 in the JEG3 choriocarcinoma cell line, using microarray-based RNA profiling. High-temperature requirement A4 (HTRA4), a placenta-specific serine protease involved in trophoblast differentiation and altered in preeclampsia, was identified as a gene reciprocally regulated by p63, and its expression was characterized in primary human placental tissues by RNA-sequencing and in situ hybridization. Potential p63 DNA-binding motifs were identified in the HTRA4 promoter, and p63 occupancy at some of these sites was confirmed using chromatin immunoprecipitation, followed by quantitative PCR in both JEG3 and trophoblast stem cells. These data begin to identify members of the transcriptional network downstream of p63, thus laying the groundwork for probing mechanisms by which this important transcription factor regulates trophoblast stemness and differentiation.

胎盘在妊娠成功与否中起着至关重要的作用。TP53家族的转录因子ΔNp63α(p63)在绒毛细胞滋养母细胞(CTB)(人类胎盘的上皮干细胞)中高度表达,并参与CTB的维持和分化。我们通过确定 p63 的下游靶点来研究其作用机制。使用基于芯片的 RNA 图谱分析评估了 JEG3 绒毛膜癌细胞系中过表达和敲除 p63 后的基因表达变化。高温要求 A4(HTRA4)是一种胎盘特异性丝氨酸蛋白酶,参与滋养层细胞分化并在子痫前期发生改变。在 HTRA4 启动子中发现了潜在的 p63 DNA 结合基团,并通过染色质免疫共沉淀和定量 PCR 在 JEG3 和滋养层干细胞中证实了 p63 在其中一些位点的占据。这些数据开始确定p63下游转录网络的成员,从而为探究这一重要转录因子调控滋养细胞干性和分化的机制奠定了基础。
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引用次数: 0
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American Journal of Pathology
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