The African savannah elephant (Loxodonta Africana) migrate in response to limiting environmental factors in arid areas. Using global positioning systems (GPS) telemetry data, we determined: (i) the dominant vegetation types used by African savannah elephants and (ii) the differences in the area occupied by dominant vegetation types in Gonarezhou National Park (GNP) in Zimbabwe. Significant spatiotemporal differences (p < 0.05) detected in vegetation types utilised by the African savannah elephant, and in the area covered by vegetation types induced a determinate foraging pattern. Global positioning system telemetry is a smart conservation tool for surveillance of movement patterns of African savannah elephants in protected areas.
{"title":"Space use by African savannah elephants in an arid protected area dominated by a mosaic of different vegetation","authors":"Nobert Tafadzwa Mukomberanwa, Phillip Taru, Beaven Utete","doi":"10.1111/aje.13240","DOIUrl":"https://doi.org/10.1111/aje.13240","url":null,"abstract":"<p>The African savannah elephant (<i>Loxodonta Africana</i>) migrate in response to limiting environmental factors in arid areas. Using global positioning systems (GPS) telemetry data, we determined: (i) the dominant vegetation types used by African savannah elephants and (ii) the differences in the area occupied by dominant vegetation types in Gonarezhou National Park (GNP) in Zimbabwe. Significant spatiotemporal differences (<i>p</i> < 0.05) detected in vegetation types utilised by the African savannah elephant, and in the area covered by vegetation types induced a determinate foraging pattern. Global positioning system telemetry is a smart conservation tool for surveillance of movement patterns of African savannah elephants in protected areas.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138713738","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cercopithecus monkeys are a species-rich genus generally considered arboreal frugivores with widespread distribution in sub-Saharan African forests. We studied a largely undocumented species threatened by habitat fragmentation, Cercopithecus denti, during 3 months in 2017 in a small forest fragment of Nyungwe National Park, Rwanda. C. denti's diet was composed of about 58% leaves and 18% fruits. They spent most of their time 10–20 m above ground in secondary forest and open areas. This first systematic study of C. denti shows capacity for a highly folivorous diet, supporting arguments that Cercopithecus have flexible diets, likely enabling persistence in forest fragments.
ercopithecus猴属物种丰富,通常被认为是树栖节食动物,广泛分布于撒哈拉以南非洲森林。我们于2017年在卢旺达Nyungwe国家公园的一个小森林片段中,用3个月的时间研究了受栖息地破碎化威胁的一个基本未被记录的物种--Cercopithecus denti。C. denti的食物由大约58%的树叶和18%的水果组成。它们大部分时间都在离地面10-20米高的次生林和开阔地带活动。这是对 C. denti 的首次系统性研究,研究结果表明,C. denti 具有高度食叶的能力,这支持了 Cercopithecus 具有灵活的饮食习惯的论点,这很可能使它们能够在森林片段中持续生存。
{"title":"Preliminary study of Dent's monkey (Cercopithecus denti) living in a forest fragment in Rwanda, highlighting dietary flexibility in guenons","authors":"Ambrosine Clark, Beth A. Kaplin","doi":"10.1111/aje.13228","DOIUrl":"https://doi.org/10.1111/aje.13228","url":null,"abstract":"<p><i>Cercopithecus</i> monkeys are a species-rich genus generally considered arboreal frugivores with widespread distribution in sub-Saharan African forests. We studied a largely undocumented species threatened by habitat fragmentation, <i>Cercopithecus denti</i>, during 3 months in 2017 in a small forest fragment of Nyungwe National Park, Rwanda. <i>C. denti's</i> diet was composed of about 58% leaves and 18% fruits. They spent most of their time 10–20 m above ground in secondary forest and open areas. This first systematic study of <i>C. denti</i> shows capacity for a highly folivorous diet, supporting arguments that <i>Cercopithecus</i> have flexible diets, likely enabling persistence in forest fragments.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138713737","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Peter Happy Murwanyi, Robert Kityo, Enock Ssekuubwa, Mnason Tweheyo
Wetland conversion threatens wetland specialists by reducing their core habitat. The sitatunga is a wetland specialist with declining populations. However, knowledge of sitatunga ecology and threats is limited, particularly outside protected areas. We examined sitatunga food sources, and habitat use in undisturbed Marshes and Marsh–Savannah transition blocks, and a Cultivated (disturbed) block in River Mayanja wetland, central Uganda. We recorded indirect indices and sightings of sitatunga along a 10 km transect in each block, and surveyed food sources in 34 plots along the transects. Our results indicate that the indices and sightings of Sitatunga had lower relative frequency in the Cultivated than in the Marshes and Marsh–Savannah transition blocks. Sitatunga feed on 39 plant species in 13 families and six growth forms; grasses, herbs, sedges, climbers, shrubs and water weeds. Cyperus papyrus, Echinochloa pyramidalis, Leersia hexandra accounted for 58% of sitatunga food sources. There were more individuals and species with Sitatunga feeding activity in the Marshes and Marsh–Savannah transition blocks than in the Cultivated block. Our results show that sitatunga habitat use and food sources are constrained in disturbed habitats while threats are intensified. To maintain wetland integrity and stability of sitatunga populations, stakeholders need to address wetland encroachment.
{"title":"Sitatunga (Tragelaphus spekii) food sources and habitat use in Marsh–Savannah-cultivation mosaics","authors":"Peter Happy Murwanyi, Robert Kityo, Enock Ssekuubwa, Mnason Tweheyo","doi":"10.1111/aje.13246","DOIUrl":"https://doi.org/10.1111/aje.13246","url":null,"abstract":"<p>Wetland conversion threatens wetland specialists by reducing their core habitat. The sitatunga is a wetland specialist with declining populations. However, knowledge of sitatunga ecology and threats is limited, particularly outside protected areas. We examined sitatunga food sources, and habitat use in undisturbed Marshes and Marsh–Savannah transition blocks, and a Cultivated (disturbed) block in River Mayanja wetland, central Uganda. We recorded indirect indices and sightings of sitatunga along a 10 km transect in each block, and surveyed food sources in 34 plots along the transects. Our results indicate that the indices and sightings of Sitatunga had lower relative frequency in the Cultivated than in the Marshes and Marsh–Savannah transition blocks. Sitatunga feed on 39 plant species in 13 families and six growth forms; grasses, herbs, sedges, climbers, shrubs and water weeds. <i>Cyperus papyrus</i>, <i>Echinochloa pyramidalis</i>, <i>Leersia hexandra</i> accounted for 58% of sitatunga food sources. There were more individuals and species with Sitatunga feeding activity in the Marshes and Marsh–Savannah transition blocks than in the Cultivated block. Our results show that sitatunga habitat use and food sources are constrained in disturbed habitats while threats are intensified. To maintain wetland integrity and stability of sitatunga populations, stakeholders need to address wetland encroachment.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138713725","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Elephants have been structuring woodlands along the Chobe Riverfront, changing them to shrublands. Along with the loss of woodland cover, impala populations seem to be increasing along the Chobe Riverfront. We tested the prediction that elephant-induced loss in woodland cover has increased preferred habitats for impalas along the Chobe Riverfront. We found that home range sizes of impala breeding herds did not differ among seasons at all spatial scales. Impala breeding herds were more selective at broader spatial scales than finer spatial scales in all seasons. Impala breeding herds selected shrublands more than the other habitats throughout the year. The Baikiaea woodland and the riparian woodland were the most avoided habitats, with mixed combretum shrublands and relationships between habitat selectivity and group size, inter-herd encounter and habitat fidelity. The results of our study suggest that impala breeding herds used elephant-transformed habitats throughout the year. Season did not influence habitat selectivity, suggesting that the preferred habitat had higher required resources relative to the other habitats throughout the year.
{"title":"Habitat use by impala (Aepyceros melampus) breeding herds in an elephant-impacted woodland along the Chobe Riverfront, Botswana","authors":"Lucas P. Rutina","doi":"10.1111/aje.13244","DOIUrl":"https://doi.org/10.1111/aje.13244","url":null,"abstract":"<p>Elephants have been structuring woodlands along the Chobe Riverfront, changing them to shrublands. Along with the loss of woodland cover, impala populations seem to be increasing along the Chobe Riverfront. We tested the prediction that elephant-induced loss in woodland cover has increased preferred habitats for impalas along the Chobe Riverfront. We found that home range sizes of impala breeding herds did not differ among seasons at all spatial scales. Impala breeding herds were more selective at broader spatial scales than finer spatial scales in all seasons. Impala breeding herds selected shrublands more than the other habitats throughout the year. The <i>Baikiaea</i> woodland and the riparian woodland were the most avoided habitats, with mixed <i>combretum</i> shrublands and relationships between habitat selectivity and group size, inter-herd encounter and habitat fidelity. The results of our study suggest that impala breeding herds used elephant-transformed habitats throughout the year. Season did not influence habitat selectivity, suggesting that the preferred habitat had higher required resources relative to the other habitats throughout the year.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/aje.13244","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138634125","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Over a period of 2 years, we noted that many large mammals in the Murchison Falls National Park, Uganda, remained fairly close to the road—rather than running away—as we drove past at a relatively slow speed, of about 20–25 kph. We consider that over recent years, many of these animals have become habituated to tourist vehicles passing nearby and we recorded the minimum distances at which nine common species remained at, or close to the road edge as we drove past. Many stayed still actually at the edge, while Oribis and Hartebbest sometimes remained on the road itself.
{"title":"Habituation of large mammals to passing vehicles","authors":"Derek Pomeroy, Benard Matovu, Micheal Kibuule","doi":"10.1111/aje.13243","DOIUrl":"https://doi.org/10.1111/aje.13243","url":null,"abstract":"<p>Over a period of 2 years, we noted that many large mammals in the Murchison Falls National Park, Uganda, remained fairly close to the road—rather than running away—as we drove past at a relatively slow speed, of about 20–25 kph. We consider that over recent years, many of these animals have become habituated to tourist vehicles passing nearby and we recorded the minimum distances at which nine common species remained at, or close to the road edge as we drove past. Many stayed still actually at the edge, while Oribis and Hartebbest sometimes remained on the road itself.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138634126","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
David J. Kavana, Nsajigwa Mbije, Tecla M. Sirilo, Happiness C. Bupamba
Habitat heterogeneity plays a vital ecological role in influencing community ecology dynamics. We evaluated the relationship between habitat heterogeneity and land-use cover with avian community structure in the human-dominated landscape of the Katavi-Rukwa ecosystem in Tanzania. We used the fixed-radius point count method to record birds in different habitats. We calculated the relative abundances and the Shannon-Wiener diversity index of bird guilds across habitats as well as the Normalised Difference Vegetation Index (NDVI) and estimated land-use cover of the study area from Landsat 8 images. We grouped birds into five major guilds: Insectivore, Granivore, Omnivore, Carnivore and Nectarivore. Among the guilds, Insectivores, Omnivores, Nectarivores and Carnivores were positively correlated with an increase in NDVI, while Granivores were negatively correlated with an increase in NDVI. Among the habitats, woodland had high species diversity whereas riverine had low species diversity. Our findings highlight the importance of habitat heterogeneity in biodiversity conservation in human-dominated landscapes, and we suggest implementing conservation in these landscapes.
{"title":"The spatio-temporal influences of habitat heterogeneity on the community structure of avian feeding guilds in human-dominated landscapes of the East African miombo woodlands","authors":"David J. Kavana, Nsajigwa Mbije, Tecla M. Sirilo, Happiness C. Bupamba","doi":"10.1111/aje.13237","DOIUrl":"10.1111/aje.13237","url":null,"abstract":"<p>Habitat heterogeneity plays a vital ecological role in influencing community ecology dynamics. We evaluated the relationship between habitat heterogeneity and land-use cover with avian community structure in the human-dominated landscape of the Katavi-Rukwa ecosystem in Tanzania. We used the fixed-radius point count method to record birds in different habitats. We calculated the relative abundances and the Shannon-Wiener diversity index of bird guilds across habitats as well as the Normalised Difference Vegetation Index (NDVI) and estimated land-use cover of the study area from Landsat 8 images. We grouped birds into five major guilds: Insectivore, Granivore, Omnivore, Carnivore and Nectarivore. Among the guilds, Insectivores, Omnivores, Nectarivores and Carnivores were positively correlated with an increase in NDVI, while Granivores were negatively correlated with an increase in NDVI. Among the habitats, woodland had high species diversity whereas riverine had low species diversity. Our findings highlight the importance of habitat heterogeneity in biodiversity conservation in human-dominated landscapes, and we suggest implementing conservation in these landscapes.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138538730","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Geoffrey M. Wambugu, Bernard Amakobe, Çağan H. Şekercioğlu, Mwangi Githiru
Mt. Kasigau is the northeastern most of the Eastern Arc Mountains global hotspot and harbours some endemic and threatened species, but little is known about bird community changes along its elevational gradient. We assessed the relationship between bird biodiversity metrics, season, human disturbance, elevation and temperature using mist-netting data collected bi-annually over a 10-year period. Birds were sampled along the mountain's elevational gradient at four elevation levels (858, 1104, 1321 and 1547 m). Bird richness, diversity and evenness decreased with increasing altitude in both dry and wet seasons. Bird abundance declined with increasing elevation for the lower three elevation levels but peaked at the highest elevation. All diversity metrics were higher in the wet season compared to the dry season across all the years. Elevation had a greater effect on species assemblages than season, disturbance and temperature. Temperature had significant effects on abundance, diversity and richness, while disturbance had significant effects on diversity, evenness and richness. We conclude that bird assemblages in Mt. Kasigau are strongly shaped by elevational changes, while temperature and disturbance constitute important factors influencing bird conservation in the face of global warming. Our study highlights that elevation, disturbance and temperature influence bird assemblages along tropical elevational gradients.
Kasigau山是东弧山脉最东北部的全球热点地区,栖息着一些特有种和濒危物种,但鸟类群落沿海拔梯度的变化鲜为人知。我们利用雾网数据评估了鸟类生物多样性指标与季节、人为干扰、海拔和温度之间的关系。在海拔858、1104、1321和1547 m 4个海拔高度沿海拔梯度采集鸟类样本。鸟类丰富度、多样性和均匀度在干湿季节均随海拔升高而降低。鸟类丰度在海拔较低的3个海拔高度随海拔高度的增加而下降,但在海拔最高的海拔高度达到峰值。在所有年份中,丰水季的所有多样性指标都高于旱季。海拔对物种组合的影响大于季节、干扰和温度。温度对丰度、多样性和丰富度有显著影响,干扰对多样性、均匀度和丰富度有显著影响。结果表明,海拔变化对喀西高原鸟类群落的影响较大,气温和干扰是影响全球变暖背景下鸟类保护的重要因素。我们的研究强调了海拔、扰动和温度对热带海拔梯度上鸟类组合的影响。
{"title":"Elevational patterns of species richness and community structure of understorey birds in an East African montane forest","authors":"Geoffrey M. Wambugu, Bernard Amakobe, Çağan H. Şekercioğlu, Mwangi Githiru","doi":"10.1111/aje.13235","DOIUrl":"10.1111/aje.13235","url":null,"abstract":"<p>Mt. Kasigau is the northeastern most of the Eastern Arc Mountains global hotspot and harbours some endemic and threatened species, but little is known about bird community changes along its elevational gradient. We assessed the relationship between bird biodiversity metrics, season, human disturbance, elevation and temperature using mist-netting data collected bi-annually over a 10-year period. Birds were sampled along the mountain's elevational gradient at four elevation levels (858, 1104, 1321 and 1547 m). Bird richness, diversity and evenness decreased with increasing altitude in both dry and wet seasons. Bird abundance declined with increasing elevation for the lower three elevation levels but peaked at the highest elevation. All diversity metrics were higher in the wet season compared to the dry season across all the years. Elevation had a greater effect on species assemblages than season, disturbance and temperature. Temperature had significant effects on abundance, diversity and richness, while disturbance had significant effects on diversity, evenness and richness. We conclude that bird assemblages in Mt. Kasigau are strongly shaped by elevational changes, while temperature and disturbance constitute important factors influencing bird conservation in the face of global warming. Our study highlights that elevation, disturbance and temperature influence bird assemblages along tropical elevational gradients.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138538729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Matthew J. Burnett, Bradley Van Zyl, Colleen T. Downs
Diadromous macrocrustaceans need connectivity between the ocean, estuary and river to complete their life cycle. Instream barriers in lower reaches of rivers threaten upstream migrations of diadromous macrocrustaceans. Varuna litterata migrate upstream after a spawning event out at sea. These migration events have been poorly documented. We documented the presence V. litterata and Macrobrachium spp. at a vertical slot fishway and a rock ramp on the Lower Thukela River Bulk Water Supply Scheme Weir, KwaZulu-Natal, South Africa, during 2021–2022. We found Macrobrachium spp. and V. litterata made use of the rock ramp. However, the vertical slot fishway did hinder the migration of V. litterata significantly, as found in other studies.
{"title":"The migration of aquatic macrocrustaceans over an artificial barrier in the uThukela river, South Africa","authors":"Matthew J. Burnett, Bradley Van Zyl, Colleen T. Downs","doi":"10.1111/aje.13234","DOIUrl":"10.1111/aje.13234","url":null,"abstract":"<p>Diadromous macrocrustaceans need connectivity between the ocean, estuary and river to complete their life cycle. Instream barriers in lower reaches of rivers threaten upstream migrations of diadromous macrocrustaceans. <i>Varuna litterata</i> migrate upstream after a spawning event out at sea. These migration events have been poorly documented. We documented the presence <i>V. litterata</i> and <i>Macrobrachium</i> spp. at a vertical slot fishway and a rock ramp on the Lower Thukela River Bulk Water Supply Scheme Weir, KwaZulu-Natal, South Africa, during 2021–2022. We found <i>Macrobrachium</i> spp. and <i>V. litterata</i> made use of the rock ramp. However, the vertical slot fishway did hinder the migration of <i>V. litterata</i> significantly, as found in other studies.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/aje.13234","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138538712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
DNA metabarcoding requires reference libraries that link DNA sequences to species. Mitochondrial gene regions cytochrome c oxidase I (COI), 12S ribosomal RNA (12S rRNA), 16S ribosomal RNA (16S rRNA), cytochrome b (cyt b) and the hypervariable control region (D-loop) are routinely used in studies that measure genetic diversity in animal species. This study aimed to review the state of DNA reference libraries for small South African mammals as small mammals constitute a large portion of small and medium carnivore diet. Analyses of DNA records revealed that of 193 small mammal species in South Africa, only 141 have DNA sequences available for one or more of the mitochondrial genes examined. Cyt b had the highest species coverage, with 59.1% of South African species represented in the reference libraries. COI only has 33.7%, 12S rRNA has 23.8%, D-loop has 17.6%, and 16S rRNA has the lowest species coverage of 15%. This study supports the use of multiple gene regions when performing scat metabarcoding, particularly when wanting to determine the small mammal component of the diet. Additionally, it emphasises the need to build comprehensive DNA reference libraries linking sequences to taxonomically identified species.
{"title":"An assessment of South African small mammal barcode sequence libraries: Implications for future carnivore diet analyses by DNA","authors":"Vimbai I. Siziba, Sandi Willows-Munro","doi":"10.1111/aje.13233","DOIUrl":"10.1111/aje.13233","url":null,"abstract":"<p>DNA metabarcoding requires reference libraries that link DNA sequences to species. Mitochondrial gene regions cytochrome c oxidase I (COI), 12S ribosomal RNA (12S rRNA), 16S ribosomal RNA (16S rRNA), cytochrome <i>b</i> (cyt <i>b</i>) and the hypervariable control region (D-loop) are routinely used in studies that measure genetic diversity in animal species. This study aimed to review the state of DNA reference libraries for small South African mammals as small mammals constitute a large portion of small and medium carnivore diet. Analyses of DNA records revealed that of 193 small mammal species in South Africa, only 141 have DNA sequences available for one or more of the mitochondrial genes examined. Cyt <i>b</i> had the highest species coverage, with 59.1% of South African species represented in the reference libraries. COI only has 33.7%, 12S rRNA has 23.8%, D-loop has 17.6%, and 16S rRNA has the lowest species coverage of 15%. This study supports the use of multiple gene regions when performing scat metabarcoding, particularly when wanting to determine the small mammal component of the diet. Additionally, it emphasises the need to build comprehensive DNA reference libraries linking sequences to taxonomically identified species.</p>","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/aje.13233","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138538742","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Scientific exploration of the African continent, particularly during the 1700s and 1800s, was greatly supported by often unrecognised but essential contributions of native hunters, guides, translators, and cultural intermediaries. Their invaluable expertise in facilitating the integration of foreign naturalists into local communities, their capacity to share profound knowledge about the landscape, and their insights into the region's plant and animal life played a pivotal role in the success of numerous epic expeditions. Consequently, these foreign explorers managed to navigate extensive African rivers, venture into uncharted forests, and systematically record the abundant biotic and abiotic resources within untouched landscapes that had experienced minimal human interaction. Many of these unnamed local facilitators can be seen as uncelebrated ‘co-authors’ of many, if not all, the scientific discoveries made during the 1800s and early 1900s. Their unobtrusive existence, at times alluded to in the accounts of naturalists and explorers, acts as a form of ‘conciliation’ between the colonised and the colonisers. This conciliation was intended to promote scientific advancement despite the sombre legacy of colonialism and its deplorable transgressions and crimes (Ewans, 2017; Hickman, 2008; Karari, 2018). In the writings of naturalists from that era, the information provided by native individuals was not only considered fundamental and credible but also deserving of the highest scientific regard and admiration. One of the most renowned examples is the revelation of the Okapi (Okapia johnstoni), credited to the narratives conveyed by Mbuti Pygmies to the naturalist Sir Harry Johnston, which eventually led to the shipment of Okapi skins and skulls to the British Museum (Lankester, 1902). Using the words of Henry Stanley, Lankester (1902) noted that the ‘Warnbutti’ people, a Pygmy tribe, were acquainted with a creature similar to a donkey, which they called ‘Atti’. This term ‘Atti’ was a variant of the name ‘Okapi,’ as confirmed by Johnston from information provided by his native informants. In March 1900, Johnston first heard about the Okapi from the forest-dwelling natives who lived with him in Entebbe, Uganda. In early July, he arrived at the Semliki Forest in the Congo Free State. The first Belgian official to verify the accounts of the Okapi and assist in obtaining the coveted pelts was Lieutenant Rileura. The Okapi's extraordinary diet, primarily composed of leaves, elicited amazement.
In the early 1900s, the scientific approach differed from contemporary conventions, where methodological descriptions were notably less detailed. Nonetheless, if we were to narrate the discovery of the Okapi in a modern context, we would undoubtedly underscore that the Okapi's existence was validated through a meticulous process that involved direct interviews with local hunters belonging
对非洲大陆的科学探索,特别是在18世纪和19世纪,得到了当地猎人、向导、翻译和文化中介的大力支持,他们的贡献虽然不被承认,但却是必不可少的。他们在促进外国自然学家融入当地社区方面的宝贵专业知识,他们分享有关景观的深刻知识的能力,以及他们对该地区动植物生活的见解,在许多史诗探险的成功中发挥了关键作用。因此,这些外国探险家设法在广阔的非洲河流中航行,冒险进入未知的森林,并系统地记录了人类互动最少的原始景观中丰富的生物和非生物资源。这些不知名的当地促进者中,有许多人可以被视为19世纪和20世纪初许多(如果不是全部的话)科学发现的不知名的“共同作者”。它们不引人注目的存在,有时在博物学家和探险家的叙述中被提及,作为殖民者和殖民者之间的一种“和解”形式。这种和解的目的是促进科学进步,尽管殖民主义的阴影遗产及其令人遗憾的越界和罪行(Ewans, 2017;西克曼,2008;Karari, 2018)。在那个时代的博物学家的著作中,当地人提供的信息不仅被认为是基本的和可信的,而且值得最高的科学尊重和钦佩。最著名的例子之一是霍加狓(Okapia johnstoni)的发现,这归功于姆布提俾格米人向博物学家哈里·约翰斯顿爵士(Sir Harry Johnston)讲述的故事,最终导致了霍加狓的皮肤和头骨被运往大英博物馆(Lankester, 1902)。Lankester(1902)引用亨利·斯坦利(Henry Stanley)的话指出,“warnbuti”人,一个俾格米部落,熟悉一种类似驴子的生物,他们称之为“Atti”。“阿蒂”这个词是“霍加皮”这个名字的变体,约翰斯顿从他的当地线人提供的信息中证实了这一点。1900年3月,约翰斯顿第一次从与他一起住在乌干达恩德培的森林居民那里听说了霍加皮。7月初,他抵达刚果自由邦的塞姆利基森林。第一个证实霍加皮的说法并协助获得令人垂涎的毛皮的比利时官员是里留拉中尉。霍加皮的饮食主要由树叶组成,这引起了人们的惊讶。在20世纪初,科学方法不同于当时的惯例,当时的方法描述明显不够详细。然而,如果我们要在现代背景下叙述霍加狓的发现,我们无疑会强调,霍加狓的存在是通过一个细致的过程得到证实的,这个过程包括直接采访属于小型森林社区的当地猎人。这种方法严重依赖于利用他们宝贵的传统当地生态知识(LEK)。在某种程度上,它可以被视为我们现在所说的“公民科学”的先驱。
{"title":"Interviews in ecology and conservation biology: A hidden treasure for the African ecologist","authors":"Luca Luiselli","doi":"10.1111/aje.13231","DOIUrl":"10.1111/aje.13231","url":null,"abstract":"<p>Scientific exploration of the African continent, particularly during the 1700s and 1800s, was greatly supported by often unrecognised but essential contributions of native hunters, guides, translators, and cultural intermediaries. Their invaluable expertise in facilitating the integration of foreign naturalists into local communities, their capacity to share profound knowledge about the landscape, and their insights into the region's plant and animal life played a pivotal role in the success of numerous epic expeditions. Consequently, these foreign explorers managed to navigate extensive African rivers, venture into uncharted forests, and systematically record the abundant biotic and abiotic resources within untouched landscapes that had experienced minimal human interaction. Many of these unnamed local facilitators can be seen as uncelebrated ‘co-authors’ of many, if not all, the scientific discoveries made during the 1800s and early 1900s. Their unobtrusive existence, at times alluded to in the accounts of naturalists and explorers, acts as a form of ‘conciliation’ between the colonised and the colonisers. This conciliation was intended to promote scientific advancement despite the sombre legacy of colonialism and its deplorable transgressions and crimes (Ewans, <span>2017</span>; Hickman, <span>2008</span>; Karari, <span>2018</span>). In the writings of naturalists from that era, the information provided by native individuals was not only considered fundamental and credible but also deserving of the highest scientific regard and admiration. One of the most renowned examples is the revelation of the Okapi (<i>Okapia johnstoni</i>), credited to the narratives conveyed by Mbuti Pygmies to the naturalist Sir Harry Johnston, which eventually led to the shipment of Okapi skins and skulls to the British Museum (Lankester, <span>1902</span>). Using the words of Henry Stanley, Lankester (<span>1902</span>) noted that the ‘Warnbutti’ people, a Pygmy tribe, were acquainted with a creature similar to a donkey, which they called ‘Atti’. This term ‘Atti’ was a variant of the name ‘Okapi,’ as confirmed by Johnston from information provided by his native informants. In March 1900, Johnston first heard about the Okapi from the forest-dwelling natives who lived with him in Entebbe, Uganda. In early July, he arrived at the Semliki Forest in the Congo Free State. The first Belgian official to verify the accounts of the Okapi and assist in obtaining the coveted pelts was Lieutenant Rileura. The Okapi's extraordinary diet, primarily composed of leaves, elicited amazement.</p><p>In the early 1900s, the scientific approach differed from contemporary conventions, where methodological descriptions were notably less detailed. Nonetheless, if we were to narrate the discovery of the Okapi in a modern context, we would undoubtedly underscore that the Okapi's existence was validated through a meticulous process that involved direct interviews with local hunters belonging","PeriodicalId":7844,"journal":{"name":"African Journal of Ecology","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2023-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/aje.13231","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138538728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}