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Adsorption at Nanoconfined Solid-Water Interfaces. 纳米固水界面吸附研究
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-083022-030802
Anastasia G Ilgen, Kevin Leung, Louise J Criscenti, Jeffery A Greathouse

Reactions at solid-water interfaces play a foundational role in water treatment systems, catalysis, and chemical separations, and in predicting chemical fate and transport in the environment. Over the last century, experimental measurements and computational models have made tremendous progress in capturing reactions at solid surfaces. The interfacial reactivity of a solid surface, however, can change dramatically and unexpectedly when it is confined to the nanoscale. Nanoconfinement can arise in different geometries such as pores/cages (3D confinement), channels (2D confinement), and slits (1D confinement). Therefore, measurements on unconfined surfaces, and molecular models parameterized based on these measurements, fail to capture chemical behaviors under nanoconfinement. This review evaluates recent experimental and theoretical advances, with a focus on adsorption at solid-water interfaces. We review how nanoconfinement alters the physico-chemical properties of water, and how the structure and dynamics of nanoconfined water dictate energetics, pathways, and products of adsorption in nanopores. Finally, the implications of these findings and future research directions are discussed.

固水界面的反应在水处理系统、催化和化学分离以及预测化学物质在环境中的命运和运输中起着基础作用。在过去的一个世纪里,实验测量和计算模型在捕捉固体表面的反应方面取得了巨大的进步。然而,当固体表面被限制在纳米尺度时,它的界面反应性会发生意想不到的巨大变化。纳米约束可以以不同的几何形状出现,如孔/笼(3D约束)、通道(2D约束)和狭缝(1D约束)。因此,在无约束表面上的测量,以及基于这些测量参数化的分子模型,都无法捕捉到纳米约束下的化学行为。本文综述了最近的实验和理论进展,重点是在固水界面上的吸附。我们回顾了纳米约束如何改变水的物理化学性质,以及纳米约束水的结构和动力学如何决定纳米孔中吸附的能量学、途径和产物。最后,对研究结果的意义和未来的研究方向进行了讨论。
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引用次数: 5
Surface-Mediated Formation of Stable Glasses. 稳定玻璃的表面介导形成。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-042018-052708
Peng Luo, Zahra Fakhraai

Surfaces mediate the formation of stable glasses (SGs) upon physical vapor deposition (PVD) for a wide range of glass formers. The thermodynamic and kinetic stability of SGs and their anisotropic packing structures are controlled through the deposition parameters (deposition temperature and rate) as well as the chemical structure and composition of the glass former. The resulting PVD glass properties can therefore be related to the structure and dynamics of the glass surface, which can have oriented packing, enhanced surface diffusion, and a lower glass transition temperature, and can facilitate an enhanced aging rate of the interfacial region. We review our current understanding of the details of this surface-mediated SG formation process and discuss key gaps in our knowledge of glass surface dynamics and their effect on this process.

在物理气相沉积(PVD)过程中,表面介导稳定玻璃(SGs)的形成。通过沉积参数(沉积温度和速率)以及玻璃原体的化学结构和组成来控制SGs及其各向异性填充结构的热力学和动力学稳定性。由此产生的PVD玻璃性能可以与玻璃表面的结构和动力学有关,它可以具有定向填充,增强表面扩散,降低玻璃化转变温度,并且可以促进界面区域的老化速率提高。我们回顾了我们目前对这种表面介导的SG形成过程的细节的理解,并讨论了我们在玻璃表面动力学知识及其对这一过程的影响方面的关键空白。
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引用次数: 1
The Predictive Power of Exact Constraints and Appropriate Norms in Density Functional Theory. 密度泛函理论中精确约束和适当范数的预测能力。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-062422-013259
Aaron D Kaplan, Mel Levy, John P Perdew

Ground-state Kohn-Sham density functional theory provides, in principle, the exact ground-state energy and electronic spin densities of real interacting electrons in a static external potential. In practice, the exact density functional for the exchange-correlation (xc) energy must be approximated in a computationally efficient way. About 20 mathematical properties of the exact xc functional are known. In this work, we review and discuss these known constraints on the xc energy and hole. By analyzing a sequence of increasingly sophisticated density functional approximations (DFAs), we argue that (a) the satisfaction of more exact constraints and appropriate norms makes a functional more predictive over the immense space of many-electron systems and (b) fitting to bonded systems yields an interpolative DFA that may not extrapolate well to systems unlike those in the fitting set. We discuss both how the class of well-described systems has grown along with constraint satisfaction and the possibilities for future functional development.

原则上,基态Kohn-Sham密度泛函理论提供了静态外部电位中实际相互作用电子的精确基态能量和电子自旋密度。在实践中,交换相关(xc)能量的精确密度泛函必须以一种计算效率高的方式进行近似。确切的xc泛函大约有20个数学性质是已知的。在这项工作中,我们回顾和讨论了这些已知的xc能量和空穴的限制。通过分析一系列日益复杂的密度泛函近似(DFA),我们认为(a)满足更精确的约束和适当的规范使函数在多电子系统的巨大空间中更具预测性;(b)拟合到键合系统产生插值DFA,可能无法很好地外推到与拟合集不同的系统。我们讨论了这类描述良好的系统是如何随着约束的满足而增长的,以及未来功能开发的可能性。
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引用次数: 14
Ultrafast X-Ray Probes of Elementary Molecular Events. 基本分子事件的超快x射线探针。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-062322-051532
Daniel Keefer, Stefano M Cavaletto, Jérémy R Rouxel, Marco Garavelli, Haiwang Yong, Shaul Mukamel

Elementary events that determine photochemical outcomes and molecular functionalities happen on the femtosecond and subfemtosecond timescales. Among the most ubiquitous events are the nonadiabatic dynamics taking place at conical intersections. These facilitate ultrafast, nonradiative transitions between electronic states in molecules that can outcompete slower relaxation mechanisms such as fluorescence. The rise of ultrafast X-ray sources, which provide intense light pulses with ever-shorter durations and larger observation bandwidths, has fundamentally revolutionized our spectroscopic capabilities to detect conical intersections. Recent theoretical studies have demonstrated an entirely new signature emerging once a molecule traverses a conical intersection, giving detailed insights into the coupled nuclear and electronic motions that underlie, facilitate, and ultimately determine the ultrafast molecular dynamics. Following a summary of current sources and experiments, we survey these techniques and provide a unified overview of their capabilities. We discuss their potential to dramatically increase our understanding of ultrafast photochemistry.

决定光化学结果和分子功能的基本事件发生在飞秒和亚飞秒时间尺度上。其中最普遍的事件是发生在锥形交叉点的非绝热动力学。它们促进了分子中电子态之间的超快、非辐射跃迁,可以胜过荧光等较慢的弛豫机制。超快x射线源的兴起,提供了持续时间更短、观测带宽更大的强光脉冲,从根本上彻底改变了我们探测锥形相交的光谱能力。最近的理论研究表明,一旦分子穿过圆锥形交叉点,就会出现一个全新的特征,从而详细了解原子核和电子的耦合运动,这些运动是超快分子动力学的基础、促进和最终决定因素。在对当前来源和实验进行总结之后,我们将对这些技术进行调查,并提供对其功能的统一概述。我们讨论了它们的潜力,极大地增加了我们对超快光化学的理解。
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引用次数: 2
3D Super-Resolution Fluorescence Imaging of Microgels. 微凝胶的三维超分辨率荧光成像。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-062422-022601
Oleksii Nevskyi, Dominik Wöll

Super-resolution fluorescence microscopy techniques are powerful tools to investigate polymer systems. In this review, we address how these techniques have been applied to hydrogel nano- and microparticles, so-called nano- or microgels. We outline which research questions on microgels could be addressed and what new insights could be achieved. Studies of the morphology, shape, and deformation of microgels; their internal compartmentalization; the cross-linker distribution and polarity inside them; and their dynamics and diffusion are summarized. In particular, the abilities to super-resolve structures in three dimensions have boosted the research field and have also allowed researchers to obtain impressive 3D images of deformed microgels. Accessing information beyond 3D localization, such as spectral and lifetime properties and correlative imaging or the combination of data with other methods, shines new light onto polymer systems and helps us understand their complexity in detail. Such future trends and developments are also addressed.

超分辨率荧光显微镜技术是研究聚合物体系的有力工具。在这篇综述中,我们讨论了如何将这些技术应用于水凝胶纳米和微粒,即所谓的纳米或微凝胶。我们概述了可以解决的关于微凝胶的研究问题以及可以实现的新见解。微凝胶的形态、形状和变形研究;它们的内部划分;交联剂的分布及其内部极性;总结了它们的动力学和扩散。特别是,三维超分辨结构的能力推动了研究领域的发展,也使研究人员能够获得变形微凝胶的令人印象深刻的3D图像。获取3D定位之外的信息,如光谱和寿命特性以及相关成像或数据与其他方法的结合,为聚合物系统带来了新的亮点,并帮助我们详细了解其复杂性。还讨论了这些未来趋势和发展。
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引用次数: 3
Interactive Quantum Chemistry Enabled by Machine Learning, Graphical Processing Units, and Cloud Computing. 由机器学习、图形处理单元和云计算实现的交互量子化学。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-061020-053438
Umberto Raucci, Hayley Weir, Sukolsak Sakshuwong, Stefan Seritan, Colton B Hicks, Fabio Vannucci, Francesco Rea, Todd J Martínez

Modern quantum chemistry algorithms are increasingly able to accurately predict molecular properties that are useful for chemists in research and education. Despite this progress, performing such calculations is currently unattainable to the wider chemistry community, as they often require domain expertise, computer programming skills, and powerful computer hardware. In this review, we outline methods to eliminate these barriers using cutting-edge technologies. We discuss the ingredients needed to create accessible platforms that can compute quantum chemistry properties in real time, including graphical processing units-accelerated quantum chemistry in the cloud, artificial intelligence-driven natural molecule input methods, and extended reality visualization. We end by highlighting a series of exciting applications that assemble these components to create uniquely interactive platforms for computing and visualizing spectra, 3D structures, molecular orbitals, and many other chemical properties.

现代量子化学算法越来越能够准确地预测分子性质,这对化学家的研究和教育很有用。尽管取得了这样的进步,但目前对更广泛的化学社区来说,进行这样的计算是不可能的,因为它们通常需要领域的专业知识、计算机编程技能和强大的计算机硬件。在这篇综述中,我们概述了使用尖端技术消除这些障碍的方法。我们讨论了创建可访问的平台所需的成分,这些平台可以实时计算量子化学特性,包括图形处理单元——云中的加速量子化学、人工智能驱动的自然分子输入方法和扩展现实可视化。最后,我们重点介绍了一系列令人兴奋的应用程序,这些应用程序将这些组件组装在一起,以创建独特的交互式平台,用于计算和可视化光谱,3D结构,分子轨道和许多其他化学性质。
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引用次数: 2
Ultrafast Dynamics of Photosynthetic Light Harvesting: Strategies for Acclimation Across Organisms. 光合光收获的超快动态:跨生物驯化策略。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-083122-111318
Olivia C Fiebig, Dvir Harris, Dihao Wang, Madeline P Hoffmann, Gabriela S Schlau-Cohen

Photosynthetic light harvesting exhibits near-unity quantum efficiency. The high efficiency is achieved through a series of energy and charge transfer steps within a network of pigment-containing proteins. Remarkably, high efficiency is conserved across many organisms despite differences in the protein structures and organization that allow each organism to respond to its own biological niche and the stressors within. In this review, we highlight recent progress toward understanding how organisms maintain optimal light-harvesting ability by acclimating to their environment. First, we review the building blocks of photosynthetic light harvesting, energy transfer, and time-resolved spectroscopic techniques. Then, we explore how three classes of photosynthetic organisms-purple bacteria, cyanobacteria, and green plants-optimize their light-harvesting apparatuses to their particular environment. Overall, research has shown that photosynthetic energy transfer is robust to changing environmental conditions, with each organism utilizing its own strategies to optimize photon capture in its particular biological niche.

光合光收集表现出接近统一的量子效率。这种高效率是通过一系列的能量和电荷转移步骤在一个含有色素的蛋白质网络中实现的。值得注意的是,尽管蛋白质结构和组织不同,但许多生物的高效率是保守的,这些结构和组织允许每个生物对自己的生物生态位和内部的压力源做出反应。在这篇综述中,我们强调了最近在理解生物体如何通过适应环境来保持最佳光收集能力方面的进展。首先,我们回顾了光合作用光收集、能量转移和时间分辨光谱技术的基本组成部分。然后,我们探索了三种光合生物——紫色细菌、蓝藻和绿色植物——如何优化它们的光收集装置以适应它们特定的环境。总的来说,研究表明,光合能量传递对不断变化的环境条件是稳健的,每个生物都利用自己的策略来优化其特定生物生态位的光子捕获。
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引用次数: 2
Photochemical Upconversion. 光化学上转换。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-092722-104952
Jiale Feng, Jessica Alves, Damon M de Clercq, Timothy W Schmidt

Photochemical upconversion is a process whereby two lower-energy photons are converted into a higher-energy photon by sensitized triplet-triplet annihilation. While recent interest in this process has been motivated by improving the efficiencies of solar cells, many applications are being explored. In this review, we address the underlying physicochemical phenomena that are responsible for photochemical upconversion. We review their kinetics, and the requirements for annihilators and sensitizers to design efficient upconversion systems. We discuss the spin physics of the bi-excitonic interactions and how the spin character of the triplet pairs can fundamentally limit the upconversion efficiency and give rise to the magnetic field effect on delayed photoluminescence. Finally, we address light-matter coupling phenomena that could be employed to enhance photochemical upconversion.

光化学上转换是两个低能量光子通过敏化的三重态-三重态湮灭转化为高能量光子的过程。虽然最近对这一过程的兴趣是由提高太阳能电池的效率引起的,但许多应用正在探索中。在这篇综述中,我们讨论了导致光化学上转换的潜在物理化学现象。我们回顾了它们的动力学,以及对湮灭剂和敏化剂的要求,以设计有效的上转换系统。我们讨论了双激子相互作用的自旋物理,以及三重态对的自旋特性如何从根本上限制了上转换效率,并引起了磁场对延迟光致发光的影响。最后,我们讨论了可用于增强光化学上转换的光-物质耦合现象。
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引用次数: 7
Many-Body Effects in Aqueous Systems: Synergies Between Interaction Analysis Techniques and Force Field Development. 水系统中的多体效应:相互作用分析技术和力场发展之间的协同作用。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 DOI: 10.1146/annurev-physchem-062422-023532
Joseph P Heindel, Kristina M Herman, Sotiris S Xantheas

Interaction analysis techniques, including the many-body expansion (MBE), symmetry-adapted perturbation theory, and energy decomposition analysis, allow for an intuitive understanding of complex molecular interactions. We review these methods by first providing a historical context for the study of many-body interactions and discussing how nonadditivities emerge from Hamiltonians containing strictly pairwise-additive interactions. We then elaborate on the synergy between these interaction analysis techniques and the development of advanced force fields aimed at accurately reproducing the Born-Oppenheimer potential energy surface. In particular, we focus on ab initio-based force fields that aim to explicitly reproduce many-body terms and are fitted to high-level electronic structure results. These force fields generally incorporate many-body effects through (a) parameterization of distributed multipoles, (b) explicit fitting of the MBE, (c) inclusion of many-atom features in a neural network, and (d) coarse-graining of many-body terms into an effective two-body term. We also discuss the emerging use of the MBE to improve the accuracy and speed of ab initio molecular dynamics.

相互作用分析技术,包括多体展开(MBE)、对称适应微扰理论和能量分解分析,可以直观地理解复杂的分子相互作用。我们回顾了这些方法,首先提供了多体相互作用研究的历史背景,并讨论了非可加性是如何从严格包含对加性相互作用的哈密顿量中产生的。然后,我们详细阐述了这些相互作用分析技术与旨在精确再现Born-Oppenheimer势能面的先进力场的发展之间的协同作用。我们特别关注基于从头算的力场,其目的是明确地再现多体项,并适合于高级电子结构结果。这些力场通常通过(a)分布多极的参数化,(b) MBE的显式拟合,(c)在神经网络中包含多原子特征,以及(d)将多体项粗粒化为有效的两体项来整合多体效应。我们还讨论了MBE在提高从头算分子动力学的准确性和速度方面的新应用。
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引用次数: 4
Studies of Local DNA Backbone Conformation and Conformational Disorder Using Site-Specific Exciton-Coupled Dimer Probe Spectroscopy. 用位点特异性激子耦合二聚体探针光谱研究局部DNA主链构象和构象紊乱。
IF 14.7 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2023-04-24 Epub Date: 2023-01-25 DOI: 10.1146/annurev-physchem-090419-041204
Andrew H Marcus, Dylan Heussman, Jack Maurer, Claire S Albrecht, Patrick Herbert, Peter H von Hippel

The processes of genome expression, regulation, and repair require direct interactions between proteins and DNA at specific sites located at and near single-stranded-double-stranded DNA (ssDNA-dsDNA) junctions. Here, we review the application of recently developed spectroscopic methods and analyses that combine linear absorbance and circular dichroism spectroscopy with nonlinear 2D fluorescence spectroscopy to study the local conformations and conformational disorder of the sugar-phosphate backbones of ssDNA-dsDNA fork constructs that have been internally labeled with exciton-coupled cyanine (iCy3)2 dimer probes. With the application of these methods, the (iCy3)2 dimer can serve as a reliable probe of the mean local conformations and conformational distributions of the sugar-phosphate backbones of dsDNA at various critical positions. The results of our studies suggest a possible structural framework for understanding the roles of DNA breathing in driving the processes of protein-DNA complex assembly and function.

基因组表达、调节和修复过程需要蛋白质和DNA在单链双链DNA(ssDNA-dsDNA)连接处及其附近的特定位点上直接相互作用。在这里我们综述了最近开发的光谱方法和分析的应用,这些方法和分析将线性吸收光谱、圆二色性光谱与非线性2D荧光光谱相结合,以研究用激子偶联菁(iCy3)2二聚体内部标记的ssDNA-dsDNA叉构体的糖磷酸主链的局部构象和构象紊乱探针。通过这些方法的应用,(iCy3)2二聚体可以作为dsDNA的糖磷酸主链在各种关键位置的平均局部构象和构象分布的可靠探针。我们的研究结果为理解DNA呼吸在驱动蛋白质-DNA复合物组装和功能过程中的作用提供了一个可能的结构框架。
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引用次数: 3
期刊
Annual review of physical chemistry
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