首页 > 最新文献

Annals of botany最新文献

英文 中文
Seed functional ecology in Brazilian rock outcrop vegetation: an integrative synthesis. 巴西岩石露头植被的种子功能生态学:综合综述。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-09 DOI: 10.1093/aob/mcae160
Carlos A Ordóñez-Parra, Natália F Medeiros, Roberta L C Dayrell, Soizig Le Stradic, Daniel Negreiros, Tatiana Cornelissen, Fernando A O Silveira

Background and aims: Rock outcrop vegetation is distributed worldwide and hosts a diverse and unique flora that evolved under harsh environmental conditions. Unfortunately, seed ecology in such ecosystems has received little attention, especially regarding seed traits, germination responses to abiotic factors and the potential role of phylogenetic relatedness on such features Here, we provide the first quantitative and phylogenetically-informed synthesis of the seed functional ecology of Brazilian rock outcrop vegetation, with a particular focus on quartzitic and ironstone campo rupestre.

Methods: Using a database of functional trait data, we calculated the phylogenetic signal of seven seed traits for 371 taxa and tested whether they varied among growth forms, geographic distribution, and microhabitats. We also conducted meta-analyses that included 4,252 germination records for 102 taxa to assess the effects of light, temperature, and fire-related cues on the germination of campo rupestre species and explored how the aforementioned ecological groups and seed traits modulate germination responses.

Key results: All traits and germination responses showed a moderate-to-strong phylogenetic signal. Campo rupestre species responded positively to light and had maximum germination between 20-25 ºC. The effect of temperatures beyond this range was moderated by growth form, species geographic distribution, and microhabitat. Seeds exposed to heat shocks above 80 °C lost viability, but smoke accelerated germination. We found a moderating effect of seed mass for in responses to light and heat shocks, with larger, dormant seeds tolerating heat better but less sensitive to light. Species from xeric habitats evolved phenological strategies to synchronise germination during periods of increased soil water availability.

Conclusions: Phylogenetic relatedness plays a major role in shaping seed ecology of Brazilian rock outcrop vegetation. Nevertheless, seed traits and germination responses varied significantly between growth forms, species geographic distribution and microhabitats, providing support to the regeneration niche hypothesis and the role of functional traits in shaping germination in these ecosystems.

背景和目的:岩石露头植被分布于世界各地,拥有在严酷环境条件下进化出的多样而独特的植物区系。遗憾的是,这类生态系统中的种子生态学很少受到关注,尤其是在种子性状、萌发对非生物性因素的反应以及系统发育相关性对这些特征的潜在作用等方面。在此,我们首次对巴西岩石露头植被的种子功能生态学进行了定量和系统发育信息综合分析,并特别关注石英岩和铁岩露头植被:方法:我们利用功能性状数据数据库,计算了 371 个类群的七种种子性状的系统发育信号,并测试了这些性状在生长形式、地理分布和微生境之间是否存在差异。我们还对102个类群的4252条萌发记录进行了荟萃分析,以评估光照、温度和与火有关的线索对莰烯物种萌发的影响,并探讨上述生态类群和种子性状如何调节萌发反应:主要结果:所有性状和萌发反应都显示出中等至强烈的系统发育信号。Campo rupestre物种对光照有积极反应,在20-25 ºC之间萌发率最高。温度超过这一范围时,生长形式、物种地理分布和微生境对其影响有所缓和。种子暴露在 80 °C 以上的热冲击下会失去活力,但烟雾会加速发芽。我们发现种子质量对光和热冲击的反应有调节作用,较大的休眠种子对热的耐受性较好,但对光的敏感性较低。干旱栖息地的物种进化出了物候学策略,以便在土壤水分供应增加的时期同步萌发:结论:系统发育的亲缘关系在巴西岩石露头植被种子生态学的形成过程中发挥了重要作用。然而,不同生长形式、物种地理分布和微生境之间的种子特征和萌发反应差异很大,这为再生生态位假说和功能特征在这些生态系统中影响萌发的作用提供了支持。
{"title":"Seed functional ecology in Brazilian rock outcrop vegetation: an integrative synthesis.","authors":"Carlos A Ordóñez-Parra, Natália F Medeiros, Roberta L C Dayrell, Soizig Le Stradic, Daniel Negreiros, Tatiana Cornelissen, Fernando A O Silveira","doi":"10.1093/aob/mcae160","DOIUrl":"https://doi.org/10.1093/aob/mcae160","url":null,"abstract":"<p><strong>Background and aims: </strong>Rock outcrop vegetation is distributed worldwide and hosts a diverse and unique flora that evolved under harsh environmental conditions. Unfortunately, seed ecology in such ecosystems has received little attention, especially regarding seed traits, germination responses to abiotic factors and the potential role of phylogenetic relatedness on such features Here, we provide the first quantitative and phylogenetically-informed synthesis of the seed functional ecology of Brazilian rock outcrop vegetation, with a particular focus on quartzitic and ironstone campo rupestre.</p><p><strong>Methods: </strong>Using a database of functional trait data, we calculated the phylogenetic signal of seven seed traits for 371 taxa and tested whether they varied among growth forms, geographic distribution, and microhabitats. We also conducted meta-analyses that included 4,252 germination records for 102 taxa to assess the effects of light, temperature, and fire-related cues on the germination of campo rupestre species and explored how the aforementioned ecological groups and seed traits modulate germination responses.</p><p><strong>Key results: </strong>All traits and germination responses showed a moderate-to-strong phylogenetic signal. Campo rupestre species responded positively to light and had maximum germination between 20-25 ºC. The effect of temperatures beyond this range was moderated by growth form, species geographic distribution, and microhabitat. Seeds exposed to heat shocks above 80 °C lost viability, but smoke accelerated germination. We found a moderating effect of seed mass for in responses to light and heat shocks, with larger, dormant seeds tolerating heat better but less sensitive to light. Species from xeric habitats evolved phenological strategies to synchronise germination during periods of increased soil water availability.</p><p><strong>Conclusions: </strong>Phylogenetic relatedness plays a major role in shaping seed ecology of Brazilian rock outcrop vegetation. Nevertheless, seed traits and germination responses varied significantly between growth forms, species geographic distribution and microhabitats, providing support to the regeneration niche hypothesis and the role of functional traits in shaping germination in these ecosystems.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142153016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Carnivorous Nepenthes pitcher plants combine common developmental processes to make a complex epidermal trapping surface. 食肉莲雾投手植物结合了共同的发育过程,形成了复杂的表皮诱捕表面。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-06 DOI: 10.1093/aob/mcae147
Oona C Lessware, Judith M Mantell, Ulrike Bauer

Background and aims: A hierarchical micro-topography of ridges and steps renders the trap rim of carnivorous Nepenthes pitcher plants unusually wettable, and slippery for insects when wet. This complex three-dimensional epidermis structure forms, hidden from plain sight, inside the still-closed developing pitcher bud. Here, we reveal the sequence of epidermal patterning events that shape the trap rim. By linking this sequence to externally visible markers of bud development, we provide a framework for targeting individual stages of surface development in future studies.

Methods: We used cryo-scanning electron microscopy to investigate the detailed morphogenesis and epidermal patterning of the Nepenthes x hookeriana pitcher rim. In addition, we collected morphometric and qualitative data from developing pitcher traps including those sampled for microscopy.

Key results: We identified three consecutive patterning events. First, strictly oriented cell divisions resulted in radially aligned rows of cells and established a macroscopic ridge-and-groove pattern. Next, conical papillate cells formed, and papillae elongated towards the trap interior, increasingly overlapping adjacent cells and eventually forming continuous microscopic ridges. In between these ridges, the flattened papillae formed acutely angled arched steps. Finally, the cells elongated radially, thereby establishing the convex collar shape of the rim. This general sequence of surface development also showed a spatial progression from the outer to the inner trap rim edge, with several consecutive developmental stages co-occurring at any given time.

Conclusions: We demonstrate that the complex surface microtopography of the Nepenthes pitcher rim develops by sequentially combining widespread, evolutionarily conserved epidermal patterning processes in a new way. This makes the Nepenthes trap rim an excellent model for studying epidermal patterning mechanisms in leaves.

背景和目的:由脊和阶梯组成的分层微地形使食肉莲属投手植物的诱捕器边缘异常湿润,潮湿时对昆虫来说很滑。这种复杂的三维表皮结构隐藏在仍处于闭合状态的发育中的投手芽内。在这里,我们揭示了形成陷阱边缘的表皮模式化事件序列。通过将这一序列与芽发育的外部可见标记联系起来,我们提供了一个框架,以便在未来的研究中瞄准表面发育的各个阶段:方法:我们利用低温扫描电子显微镜研究了尼泊尔麝香草(Nepenthes x hookeriana)捕虫圈的详细形态发生和表皮图案。此外,我们还收集了发育中的蝮蛇诱捕器(包括显微镜取样的诱捕器)的形态计量和定性数据:我们发现了三个连续的模式化事件。首先,严格定向的细胞分裂产生了径向排列的细胞行,并形成了宏观的脊沟图案。接着,锥形乳头状细胞形成,乳头向捕获器内部伸长,越来越多地与相邻细胞重叠,最终形成连续的微观脊。在这些脊之间,扁平的乳头形成尖角弧形台阶。最后,细胞径向拉长,从而形成凸领状的边缘。这种表面发育的一般顺序还显示出从外侧到内侧陷阱边缘的空间进展,在任何给定时间内都会同时出现几个连续的发育阶段:结论:我们的研究表明,尼泊金吸虫诱捕器边缘复杂的表面微形貌是通过以一种新的方式将广泛存在且在进化过程中得到保护的表皮模式化过程按顺序结合起来而形成的。这使得景天科捕虫栅成为研究叶片表皮图案机制的绝佳模型。
{"title":"Carnivorous Nepenthes pitcher plants combine common developmental processes to make a complex epidermal trapping surface.","authors":"Oona C Lessware, Judith M Mantell, Ulrike Bauer","doi":"10.1093/aob/mcae147","DOIUrl":"https://doi.org/10.1093/aob/mcae147","url":null,"abstract":"<p><strong>Background and aims: </strong>A hierarchical micro-topography of ridges and steps renders the trap rim of carnivorous Nepenthes pitcher plants unusually wettable, and slippery for insects when wet. This complex three-dimensional epidermis structure forms, hidden from plain sight, inside the still-closed developing pitcher bud. Here, we reveal the sequence of epidermal patterning events that shape the trap rim. By linking this sequence to externally visible markers of bud development, we provide a framework for targeting individual stages of surface development in future studies.</p><p><strong>Methods: </strong>We used cryo-scanning electron microscopy to investigate the detailed morphogenesis and epidermal patterning of the Nepenthes x hookeriana pitcher rim. In addition, we collected morphometric and qualitative data from developing pitcher traps including those sampled for microscopy.</p><p><strong>Key results: </strong>We identified three consecutive patterning events. First, strictly oriented cell divisions resulted in radially aligned rows of cells and established a macroscopic ridge-and-groove pattern. Next, conical papillate cells formed, and papillae elongated towards the trap interior, increasingly overlapping adjacent cells and eventually forming continuous microscopic ridges. In between these ridges, the flattened papillae formed acutely angled arched steps. Finally, the cells elongated radially, thereby establishing the convex collar shape of the rim. This general sequence of surface development also showed a spatial progression from the outer to the inner trap rim edge, with several consecutive developmental stages co-occurring at any given time.</p><p><strong>Conclusions: </strong>We demonstrate that the complex surface microtopography of the Nepenthes pitcher rim develops by sequentially combining widespread, evolutionarily conserved epidermal patterning processes in a new way. This makes the Nepenthes trap rim an excellent model for studying epidermal patterning mechanisms in leaves.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142139069","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Two grasses differ in their absorptive root physiological traits and rooting depth under drought in an alpine steppe. 在高寒草原干旱条件下,两种草的吸收根生理特性和扎根深度不同。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-04 DOI: 10.1093/aob/mcae151
Zhi Zheng, Yurui Zhang, Ziyue Li, Feifei Dong, Lijuan Chen

Background and aims: Absorptive root traits play important roles in acquisition of water and nutrients from soil by plants. Despite numerous reports on the changes in species dominance under long-term drought in grassland community, few studies have specifically investigated absorptive root traits of these dominant species in grasslands, especially in the alpine grasslands.

Methods: Here, two grass species (Leymus secalinus and Stipa purpurea) differing in their responses to drought were selected from an alpine steppe. A series of absorptive root traits were examined under drought in a 3-year glasshouse experiment.

Key results: We found that drought had no effects on root morphological and architectural traits, whereas root physiological traits and rooting depth differed in their responses to drought. Specifically, drought significantly reduced root respiration and enhanced organ carbon (C) exudation rate, carboxylate exudation rate, acid phosphatase activity and rooting depth of L. secalinus. Particularly, L. secalinus released more citrate into the rhizosphere under drought than S. purpurea. In contrast, these root traits of S. purpurea remained relatively unchanged in response to the drought. These differential responses would render L. secalinus more competitive in acquisition of nutrients and water, thus contributing to its dominance in the community under drought. Moreover, root respiration was negatively correlated with organic C exudation rate, carboxylate exudation rate and acid phosphatase activity, indicating a tradeoff between root respiration and root exudates to acquire nutrients and water by optimizing C allocation under drought. Additionally, all root traits exhibited two independent dimensions in root economic space (RES) for both species under drought.

Conclusions: These results indicate that the plant species with great capacity to acquire water and nutrients in soil by optimizing C allocation under drought will be dominant in the community of the alpine grasslands. These findings provide an important insight into species re-ordering under drought on the Tibetan Plateau.

背景和目的:吸收性根系特征在植物从土壤中获取水分和养分方面发挥着重要作用。方法:本文从高寒草原中选取了两种对干旱反应不同的草种(Leymus secalinus 和 Stipa purpurea)。在为期 3 年的玻璃温室实验中,考察了干旱条件下根系的一系列吸收特性:我们发现干旱对根的形态和结构特征没有影响,而根的生理特征和扎根深度对干旱的反应却不同。具体而言,干旱明显降低了根的呼吸作用,提高了器官碳(C)的渗出率、羧酸盐的渗出率、酸性磷酸酶的活性和L. secalinus的生根深度。特别是,在干旱条件下,荸荠属植物比紫苏属植物向根圈释放了更多的柠檬酸盐。相比之下,紫云英的这些根部特征在应对干旱时相对保持不变。这些不同的反应会使 L. secalinus 在获取养分和水分方面更具竞争力,从而使其在干旱条件下的群落中占主导地位。此外,根呼吸与有机碳渗出率、羧酸根渗出率和酸性磷酸酶活性呈负相关,表明在干旱条件下,根呼吸与根渗出物之间存在权衡,以通过优化碳分配来获取养分和水分。此外,在干旱条件下,两种植物的所有根系性状在根系经济空间(RES)中都表现出两个独立的维度:这些结果表明,在干旱条件下通过优化碳分配在土壤中获取水分和养分能力强的植物物种将在高寒草地群落中占据优势地位。这些研究结果为青藏高原干旱条件下的物种重排提供了重要启示。
{"title":"Two grasses differ in their absorptive root physiological traits and rooting depth under drought in an alpine steppe.","authors":"Zhi Zheng, Yurui Zhang, Ziyue Li, Feifei Dong, Lijuan Chen","doi":"10.1093/aob/mcae151","DOIUrl":"https://doi.org/10.1093/aob/mcae151","url":null,"abstract":"<p><strong>Background and aims: </strong>Absorptive root traits play important roles in acquisition of water and nutrients from soil by plants. Despite numerous reports on the changes in species dominance under long-term drought in grassland community, few studies have specifically investigated absorptive root traits of these dominant species in grasslands, especially in the alpine grasslands.</p><p><strong>Methods: </strong>Here, two grass species (Leymus secalinus and Stipa purpurea) differing in their responses to drought were selected from an alpine steppe. A series of absorptive root traits were examined under drought in a 3-year glasshouse experiment.</p><p><strong>Key results: </strong>We found that drought had no effects on root morphological and architectural traits, whereas root physiological traits and rooting depth differed in their responses to drought. Specifically, drought significantly reduced root respiration and enhanced organ carbon (C) exudation rate, carboxylate exudation rate, acid phosphatase activity and rooting depth of L. secalinus. Particularly, L. secalinus released more citrate into the rhizosphere under drought than S. purpurea. In contrast, these root traits of S. purpurea remained relatively unchanged in response to the drought. These differential responses would render L. secalinus more competitive in acquisition of nutrients and water, thus contributing to its dominance in the community under drought. Moreover, root respiration was negatively correlated with organic C exudation rate, carboxylate exudation rate and acid phosphatase activity, indicating a tradeoff between root respiration and root exudates to acquire nutrients and water by optimizing C allocation under drought. Additionally, all root traits exhibited two independent dimensions in root economic space (RES) for both species under drought.</p><p><strong>Conclusions: </strong>These results indicate that the plant species with great capacity to acquire water and nutrients in soil by optimizing C allocation under drought will be dominant in the community of the alpine grasslands. These findings provide an important insight into species re-ordering under drought on the Tibetan Plateau.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142124608","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogeographic patterns match the floristic subdivisions: The diversification history of a widespread herb in subtropical China. 系统地理学模式与植物学分区相匹配:中国亚热带一种广泛分布的草本植物的多样化历史。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-04 DOI: 10.1093/aob/mcae157
Zhixia Sun, Lihua Yang, Hanghui Kong, Ming Kang, Jing Wang

Background and aims: Subtropical China is dominated by evergreen broad-leaved forests (EBLFs) and is acknowledged as a critical region for its high floristic richness and endemism. Understanding of evolutionary mechanisms of such global biodiversity hotspots comes almost exclusively from long-lived tree species. Herbaceous plants represent critical biodiversity components in forests, however, the diversification history of understory herbs in subtropical EBLFs remain poorly understood. Here, we investigated the phylogeographic patterns and demographic history of Oreocharis auricula, a widespread perennial herb endemic to the EBLFs of subtropical China.

Methods: Both cpDNA sequences and single-copy nuclear genes were used to investigate the genetic variation among 657 individuals from 68 populations. Evidences from molecular dating, demographic history construction, and species distribution modeling were also combined to infer the phylogeography and evolutionary history of O. auricula.

Key results: Strong phylogeographic signals have been congruently observed using nuclear and plastid DNA markers, with the diversification patterns generally consistent with the recognized floristic subdivisions of subtropical China. Notably, we revealed an important phylogeographic barrier along the Nanling mountain range, which is also around a climatic transition at 24-26°N latitude in subtropical China, separating the south monsoon subtropical EBLFs from the mid-subtropical EBLFs. Demographic expansion and significant niche divergence were detected among the extant lineages, which may have diverged during the early Pleistocene.

Conclusions: The inherent characteristics of understory herbs with limited dispersal and short generation time intensify the genetic divergence response of O. auricula to abiotic forces, contributing to the profound phylogeographic imprints of mountains and climate in such herbaceous flora. To further substantiate the generality of the identified patterns, it is paramount to extend phylogeographic investigations to other understory herbaceous taxa in subtropical China. These results have expanded our understanding of the diversification processes of subtropical forests in China.

背景和目的:中国亚热带地区以常绿阔叶林(EBLFs)为主,因其丰富的植物多样性和特有性而被认为是一个重要地区。对此类全球生物多样性热点地区进化机制的了解几乎完全来自长寿树种。草本植物是森林生物多样性的重要组成部分,然而,人们对亚热带EBLFs林下草本植物的多样化历史仍然知之甚少。在此,我们研究了中国亚热带EBLF特有的多年生草本植物Oreocharis auricula的系统地理格局和人口历史:方法:利用cpDNA序列和单拷贝核基因研究了68个种群657个个体的遗传变异。方法:利用 cpDNA 序列和单拷贝核基因研究了 68 个种群 657 个个体的遗传变异,并结合分子年代学、人口历史构建和物种分布建模等证据,推断了 O. auricula 的系统地理学和进化历史:主要结果:利用核DNA和质粒DNA标记物观察到了强烈的系统地理学信号,其多样化模式与公认的中国亚热带植物学分区基本一致。值得注意的是,我们揭示了沿南岭山脉的一个重要系统地理屏障,该屏障也位于中国亚热带北纬24-26°的气候过渡带附近,将南季风亚热带EBLF与中亚热带EBLF分隔开来。在现存世系中发现了人口扩张和显著的生态位分化,这些世系可能是在更新世早期分化的:结论:林下草本植物的固有特点是传播有限且世代较短,这加剧了O. auricula的遗传分化对非生物力量的反应,从而使山脉和气候在这类草本植物群中留下了深刻的系统地理印记。为了进一步证实所发现模式的普遍性,必须将系统地理学研究扩展到中国亚热带的其他林下草本类群。这些结果拓展了我们对中国亚热带森林多样性过程的认识。
{"title":"Phylogeographic patterns match the floristic subdivisions: The diversification history of a widespread herb in subtropical China.","authors":"Zhixia Sun, Lihua Yang, Hanghui Kong, Ming Kang, Jing Wang","doi":"10.1093/aob/mcae157","DOIUrl":"https://doi.org/10.1093/aob/mcae157","url":null,"abstract":"<p><strong>Background and aims: </strong>Subtropical China is dominated by evergreen broad-leaved forests (EBLFs) and is acknowledged as a critical region for its high floristic richness and endemism. Understanding of evolutionary mechanisms of such global biodiversity hotspots comes almost exclusively from long-lived tree species. Herbaceous plants represent critical biodiversity components in forests, however, the diversification history of understory herbs in subtropical EBLFs remain poorly understood. Here, we investigated the phylogeographic patterns and demographic history of Oreocharis auricula, a widespread perennial herb endemic to the EBLFs of subtropical China.</p><p><strong>Methods: </strong>Both cpDNA sequences and single-copy nuclear genes were used to investigate the genetic variation among 657 individuals from 68 populations. Evidences from molecular dating, demographic history construction, and species distribution modeling were also combined to infer the phylogeography and evolutionary history of O. auricula.</p><p><strong>Key results: </strong>Strong phylogeographic signals have been congruently observed using nuclear and plastid DNA markers, with the diversification patterns generally consistent with the recognized floristic subdivisions of subtropical China. Notably, we revealed an important phylogeographic barrier along the Nanling mountain range, which is also around a climatic transition at 24-26°N latitude in subtropical China, separating the south monsoon subtropical EBLFs from the mid-subtropical EBLFs. Demographic expansion and significant niche divergence were detected among the extant lineages, which may have diverged during the early Pleistocene.</p><p><strong>Conclusions: </strong>The inherent characteristics of understory herbs with limited dispersal and short generation time intensify the genetic divergence response of O. auricula to abiotic forces, contributing to the profound phylogeographic imprints of mountains and climate in such herbaceous flora. To further substantiate the generality of the identified patterns, it is paramount to extend phylogeographic investigations to other understory herbaceous taxa in subtropical China. These results have expanded our understanding of the diversification processes of subtropical forests in China.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142124607","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Compensating for the corolla? Pollen exposure is not associated with pollen collecting hair length. 补偿花冠?花粉暴露与花粉采集毛的长度无关。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-04 DOI: 10.1093/aob/mcae139
Hanna Makowski, Emily Scott, Keric Lamb, Laura F Galloway

Background and aims: Secondary pollen-presentation, the relocation of pollen from the anthers to elsewhere on the flower, has evolved multiple times across many plant families. While hypotheses suggest it evolved to promote outcrossing, a byproduct of relocation may be protection of pollen from loss due to abiotic factors. In Campanulaceae pollen is presented on pollen-collecting hairs along the style and the hairs retract over time and release pollen for transfer. Campanulaceae taxa vary in the degree to which pollen is exposed to environmental factors due to variation in the corolla shape and size. We tested the protective function of pollen-collecting hairs by assessing whether there was a tradeoff between the protection provided by the corolla and the pollen-collecting hairs.

Methods: We used phylogenetic comparative methods to test for associations between pollen-collecting hair length, floral shape and size metrics, and pollen exposure traits across 39 species.

Results: We anticipated longer pollen-collecting hairs in taxa with more exposed pollen presentation but found there was no relationship between estimates of pollen exposure and pollen-collecting hair length. However, pollen-collecting hair length scaled allometrically with floral size, and variation in pollen-collecting hairs, as well as most floral traits, was phylogenetically structured.

Conclusions: These results indicate that variation in pollen exposure across species does not structure variation in the pollen-collecting hairs, rather hair length scales allometrically and is phylogenetically constrained, therefore pollen-collecting hairs are unlikely to facilitate protection from environmental pressures.

背景和目的:二次授粉是指将花粉从花药转移到花朵的其他部位,这在许多植物科中已经进化了多次。有假说认为,这种进化是为了促进外交,而转移的副产品可能是保护花粉免受非生物因素的损失。在凌霄花科植物中,花粉沿着花柱呈现在花粉收集毛上,随着时间的推移,花粉收集毛会逐渐缩回,并释放花粉进行转移。由于花冠形状和大小的不同,凌霄花科类群的花粉受环境因素影响的程度也不同。我们通过评估花冠和花粉收集毛提供的保护之间是否存在权衡,来检验花粉收集毛的保护功能:方法:我们使用系统发育比较方法检验了39个物种的花粉收集毛长度、花朵形状和大小指标以及花粉暴露性状之间的关联:我们预计花粉暴露较多的类群花粉采集毛较长,但发现花粉暴露估计值与花粉采集毛长度之间没有关系。然而,花粉采集毛的长度与花的大小成等比例关系,而且花粉采集毛以及大多数花的特征的变异具有系统发生结构:这些结果表明,花粉暴露在不同物种间的差异并没有形成花粉收集毛的结构变异,相反,毛的长度与花的大小成等比例关系,并且受到系统发育的限制,因此花粉收集毛不太可能促进保护花粉免受环境压力的影响。
{"title":"Compensating for the corolla? Pollen exposure is not associated with pollen collecting hair length.","authors":"Hanna Makowski, Emily Scott, Keric Lamb, Laura F Galloway","doi":"10.1093/aob/mcae139","DOIUrl":"https://doi.org/10.1093/aob/mcae139","url":null,"abstract":"<p><strong>Background and aims: </strong>Secondary pollen-presentation, the relocation of pollen from the anthers to elsewhere on the flower, has evolved multiple times across many plant families. While hypotheses suggest it evolved to promote outcrossing, a byproduct of relocation may be protection of pollen from loss due to abiotic factors. In Campanulaceae pollen is presented on pollen-collecting hairs along the style and the hairs retract over time and release pollen for transfer. Campanulaceae taxa vary in the degree to which pollen is exposed to environmental factors due to variation in the corolla shape and size. We tested the protective function of pollen-collecting hairs by assessing whether there was a tradeoff between the protection provided by the corolla and the pollen-collecting hairs.</p><p><strong>Methods: </strong>We used phylogenetic comparative methods to test for associations between pollen-collecting hair length, floral shape and size metrics, and pollen exposure traits across 39 species.</p><p><strong>Results: </strong>We anticipated longer pollen-collecting hairs in taxa with more exposed pollen presentation but found there was no relationship between estimates of pollen exposure and pollen-collecting hair length. However, pollen-collecting hair length scaled allometrically with floral size, and variation in pollen-collecting hairs, as well as most floral traits, was phylogenetically structured.</p><p><strong>Conclusions: </strong>These results indicate that variation in pollen exposure across species does not structure variation in the pollen-collecting hairs, rather hair length scales allometrically and is phylogenetically constrained, therefore pollen-collecting hairs are unlikely to facilitate protection from environmental pressures.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142124606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Floral resource availability declines and florivory increases along an elevation gradient in a highly biodiverse community. 在一个生物多样性高度丰富的群落中,沿着海拔梯度,花卉资源的可用性下降,而花木的生长量增加。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-03 DOI: 10.1093/aob/mcae155
I Gélvez-Zúñiga, M Beirão, S Novais, J C Santiago, G W Fernandes

Background and aims: Flower-visitor interactions comprise a continuum of behaviors, from mutualistic partners to antagonistic visitors. Despite being relatively frequent in natural communities, florivory remains unexplored, especially when comprising abiotic factors, spatio-temporal variations and global environmental changes. Here, we addressed the variation of florivory driven by changes in elevation and temporal flower availability. We expect decreased floral resources as elevation increases -due to environmental constraints- which may affect plant-florivore interactions. Yet, if floral resources decrease but florivores remain constant, then we may expect an increase in florivory with increasing elevation in the community.

Methods: The flowering phenology of plant individuals was recorded in the Neotropical campo rupestre vegetation, in southeastern Brazil. Damages by florivores were recorded in plots at elevations ranging from 823 to 1411 m using two response variables as a proxy for florivory: the proportion of attacked flowers per plant and the proportion of petal removal on single flowers.

Key results: Flower attack increased with elevation and damages were intensified in species with longer flowering periods. Conversely, longer flowering periods resulted in higher levels of petal removal when decreasing elevation. The temporal availability of flowers affected florivory, with the proportion of attacked flowers being more intense when there are less flowered individuals in the community. Petal removal on single flowers was intensified in plots with a larger number of individuals flowering, and with more species co-flowering.

Conclusions: This study brings one of the broadest records of a commonly neglected interaction of insects feeding on floral structures, quantifying the combined effect of floral display and availability along an elevation gradient in a highly biodiverse mountaintop community. These findings contribute to filling in the gap in the understanding of florivory dynamics, focusing on a tropical mountaintop scenario facing imminent environmental changes and excessive natural resource exploitation.

背景和目的花卉与访客之间的相互作用包括从互惠伙伴到拮抗访客的一系列行为。尽管花媒在自然群落中相对频繁,但仍未被探索,特别是当包括非生物因素、时空变化和全球环境变化时。在这里,我们研究了由海拔高度和花卉可利用性的时空变化所驱动的花期变化。由于环境限制,我们预计随着海拔的升高,花卉资源会减少,这可能会影响植物与花食动物之间的相互作用。然而,如果花卉资源减少,但花食性动物保持不变,那么我们可能会预期随着群落海拔的增加,花食性也会增加:方法:在巴西东南部的新热带峡谷植被中记录了植物个体的开花物候。在海拔 823 米至 1411 米的地块中记录了食花植物的破坏情况,使用两个响应变量作为食花植物破坏的替代变量:每株植物受攻击花朵的比例和单朵花花瓣被摘除的比例:主要结果:花朵受害程度随海拔升高而增加,花期越长的物种受害程度越严重。相反,当海拔降低时,花期越长,花瓣被摘除的比例越高。花朵在时间上的可获得性会影响花朵的被害程度,当群落中开花个体较少时,被害花朵的比例会更高。在开花个体数量较多、共同开花的物种较多的地块中,单朵花的花瓣被摘除的程度更强:本研究对昆虫取食花卉结构这一通常被忽视的相互作用进行了最广泛的记录,量化了高度生物多样性的山顶群落中沿海拔梯度的花卉展示和可用性的综合影响。这些发现有助于填补人们对花卉取食动态了解的空白,重点关注面临迫在眉睫的环境变化和过度自然资源开发的热带山顶情景。
{"title":"Floral resource availability declines and florivory increases along an elevation gradient in a highly biodiverse community.","authors":"I Gélvez-Zúñiga, M Beirão, S Novais, J C Santiago, G W Fernandes","doi":"10.1093/aob/mcae155","DOIUrl":"https://doi.org/10.1093/aob/mcae155","url":null,"abstract":"<p><strong>Background and aims: </strong>Flower-visitor interactions comprise a continuum of behaviors, from mutualistic partners to antagonistic visitors. Despite being relatively frequent in natural communities, florivory remains unexplored, especially when comprising abiotic factors, spatio-temporal variations and global environmental changes. Here, we addressed the variation of florivory driven by changes in elevation and temporal flower availability. We expect decreased floral resources as elevation increases -due to environmental constraints- which may affect plant-florivore interactions. Yet, if floral resources decrease but florivores remain constant, then we may expect an increase in florivory with increasing elevation in the community.</p><p><strong>Methods: </strong>The flowering phenology of plant individuals was recorded in the Neotropical campo rupestre vegetation, in southeastern Brazil. Damages by florivores were recorded in plots at elevations ranging from 823 to 1411 m using two response variables as a proxy for florivory: the proportion of attacked flowers per plant and the proportion of petal removal on single flowers.</p><p><strong>Key results: </strong>Flower attack increased with elevation and damages were intensified in species with longer flowering periods. Conversely, longer flowering periods resulted in higher levels of petal removal when decreasing elevation. The temporal availability of flowers affected florivory, with the proportion of attacked flowers being more intense when there are less flowered individuals in the community. Petal removal on single flowers was intensified in plots with a larger number of individuals flowering, and with more species co-flowering.</p><p><strong>Conclusions: </strong>This study brings one of the broadest records of a commonly neglected interaction of insects feeding on floral structures, quantifying the combined effect of floral display and availability along an elevation gradient in a highly biodiverse mountaintop community. These findings contribute to filling in the gap in the understanding of florivory dynamics, focusing on a tropical mountaintop scenario facing imminent environmental changes and excessive natural resource exploitation.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142118840","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylotranscriptomic analyses reveal the evolutionary complexity of Paris L. (Melanthiaceae), a morphologically distinctive genus with significant pharmaceutical importance. 系统转录组学分析揭示了巴黎木属(Melanthiaceae)的进化复杂性,该属形态独特,具有重要的药用价值。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-02 DOI: 10.1093/aob/mcae156
Nian Zhou, Ke Miao, Luxiao Hou, Haiyang Liu, Jiahui Chen, Yunheng Ji

Background and aims: Previous phylogenetic studies on the pharmaceutically significant genus Paris (Melanthiaceae) have consistently revealed substantial cytonuclear discordance, yet the underlying mechanism responsible for this phenomenon remains elusive. This study aims to reconstruct a robust nuclear backbone phylogeny and elucidate the potential evolutionarily complex events contributing to previously observed cytonuclear discordance within Paris.

Methods: Based on a comprehensive set of nuclear low-copy orthologous genes obtained from transcriptomic data, the intrageneric phylogeny of Paris, along with its phylogenetic relationships to allied genera were inferred, using coalescent and concatenated approaches. The analysis of gene tree discordance and reticulate evolution, in conjunction with an incomplete lineage sorting (ILS) simulation, was conducted to explore potential hybridization and ILS events in the evolutionary history of Paris and assess their contribution to the discordance of gene trees.

Key results: The nuclear phylogeny unequivocally confirmed the monophyly of Paris and its sister relationship with Trillium, while widespread incongruences in gene trees were observed at the majority of internal nodes within Paris. The reticulate evolution analysis identified five instances of hybridization events in Paris, indicating that hybridization events might have recurrently occurred throughout the evolutionary history of Paris. In contrast, the ILS simulations revealed that only two internal nodes within sect. Euthyra experienced ILS events.

Conclusions: Our data suggest that the previously observed cytonuclear discordance in the phylogeny of Paris can primarily be attributed to recurrent hybridization events, with secondary contributions from infrequent ILS events. The recurrent hybridization events in the evolutionary history of Paris not only drove lineage diversification and speciation but also facilitated morphological innovation, and enhanced ecological adaptability. Therefore, artificial hybridization has great potential for breeding medicinal Paris species. These findings significantly contribute to our comprehensive understanding of the evolutionary complexity of this pharmaceutically significant plant lineage, thereby facilitating effective exploration and conservation efforts.

背景和目的:以前对具有重要药用价值的巴黎属(Melanthiaceae)进行的系统发育研究一直揭示了大量的胞核不一致性,但造成这种现象的潜在机制仍然难以捉摸。本研究旨在重建一个强大的核骨干系统发育,并阐明导致之前观察到的巴黎属细胞核不一致的潜在复杂进化事件:方法:基于从转录组数据中获得的一整套核低拷贝直向同源基因,利用聚合和连接方法推断了巴黎属的属内系统发育及其与同属的系统发育关系。结合不完全世系分类(ILS)模拟,对基因树的不一致性和网状进化进行了分析,以探索巴黎属进化史中潜在的杂交和 ILS 事件,并评估它们对基因树不一致性的影响:主要结果:核系统进化明确证实了巴黎树的单系性及其与三叶草的姊妹关系,而在巴黎树的大部分内部节点上观察到了基因树的广泛不一致性。网状进化分析在巴黎中发现了五次杂交事件,表明杂交事件可能在巴黎的整个进化历史中反复发生。与此相反,ILS模拟显示,在Euthyra科中只有两个内部节点经历了ILS事件。结论:我们的数据表明,之前观察到的巴黎龙系统发育中的细胞核不一致性主要归因于反复发生的杂交事件,其次才是不经常发生的 ILS 事件。巴黎鱼进化史中反复发生的杂交事件不仅推动了鱼系的多样化和物种的分化,还促进了形态创新,增强了生态适应性。因此,人工杂交在培育药用巴黎树种方面具有巨大潜力。这些发现大大有助于我们全面了解这一具有重要药用价值的植物品系的进化复杂性,从而促进有效的探索和保护工作。
{"title":"Phylotranscriptomic analyses reveal the evolutionary complexity of Paris L. (Melanthiaceae), a morphologically distinctive genus with significant pharmaceutical importance.","authors":"Nian Zhou, Ke Miao, Luxiao Hou, Haiyang Liu, Jiahui Chen, Yunheng Ji","doi":"10.1093/aob/mcae156","DOIUrl":"https://doi.org/10.1093/aob/mcae156","url":null,"abstract":"<p><strong>Background and aims: </strong>Previous phylogenetic studies on the pharmaceutically significant genus Paris (Melanthiaceae) have consistently revealed substantial cytonuclear discordance, yet the underlying mechanism responsible for this phenomenon remains elusive. This study aims to reconstruct a robust nuclear backbone phylogeny and elucidate the potential evolutionarily complex events contributing to previously observed cytonuclear discordance within Paris.</p><p><strong>Methods: </strong>Based on a comprehensive set of nuclear low-copy orthologous genes obtained from transcriptomic data, the intrageneric phylogeny of Paris, along with its phylogenetic relationships to allied genera were inferred, using coalescent and concatenated approaches. The analysis of gene tree discordance and reticulate evolution, in conjunction with an incomplete lineage sorting (ILS) simulation, was conducted to explore potential hybridization and ILS events in the evolutionary history of Paris and assess their contribution to the discordance of gene trees.</p><p><strong>Key results: </strong>The nuclear phylogeny unequivocally confirmed the monophyly of Paris and its sister relationship with Trillium, while widespread incongruences in gene trees were observed at the majority of internal nodes within Paris. The reticulate evolution analysis identified five instances of hybridization events in Paris, indicating that hybridization events might have recurrently occurred throughout the evolutionary history of Paris. In contrast, the ILS simulations revealed that only two internal nodes within sect. Euthyra experienced ILS events.</p><p><strong>Conclusions: </strong>Our data suggest that the previously observed cytonuclear discordance in the phylogeny of Paris can primarily be attributed to recurrent hybridization events, with secondary contributions from infrequent ILS events. The recurrent hybridization events in the evolutionary history of Paris not only drove lineage diversification and speciation but also facilitated morphological innovation, and enhanced ecological adaptability. Therefore, artificial hybridization has great potential for breeding medicinal Paris species. These findings significantly contribute to our comprehensive understanding of the evolutionary complexity of this pharmaceutically significant plant lineage, thereby facilitating effective exploration and conservation efforts.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103742","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Thriving in a salty future: morpho-anatomical, physiological, and molecular adaptations to salt stress in alfalfa (Medicago sativa L.) and other crops. 在多盐的未来茁壮成长:紫花苜蓿(Medicago sativa L.)和其他作物对盐胁迫的形态解剖、生理和分子适应。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-08-31 DOI: 10.1093/aob/mcae152
Xu Liu, J Theo M Elzenga, Jan Henk Venema, Kira J Tiedge

Background: With soil salinity levels rising at an alarming rate, accelerated by climate change and human interventions, there is a growing need for crop varieties that can grow on saline soils. Alfalfa (Medicago sativa) is a cool-season perennial leguminous crop, commonly grown as forage, biofuel feedstock, and soil conditioner. It demonstrates significant potential for agricultural circularity and sustainability, for example by fixing nitrogen, sequestering carbon, and improving soil structures. Although alfalfa is traditionally regarded as moderately salt-tolerant species, modern alfalfa varieties display specific salt-tolerance mechanisms, which could be used to pave alfalfa's role as a leading crop able to grow on saline soils.

Scope: Alfalfa's salt tolerance underlies a large variety of cascading biochemical and physiological mechanisms. These are partly enabled by alfalfa's complex genome structure and out-crossing nature, which on the other hand entail impediments for molecular and genetic studies. This review first summarizes the general effects of salinity on plants and the broad-ranging mechanisms for dealing with salt-induced osmotic stress, ion toxicity, and secondary stress. Secondly, we address defensive and adaptive strategies that have been described for alfalfa, such as the plasticity of alfalfa's root system, hormonal crosstalk for maintaining ion homeostasis, spatiotemporal specialized metabolite profiles, and the protection of alfalfa-rhizobia associations. Finally, bottlenecks for research of the physiological and molecular salt-stress responses as well as biotechnology-driven improvements of salt tolerance are identified and discussed.

Conclusion: Understanding morpho-anatomical, physiological, and molecular responses to salinity is essential for the improvement of alfalfa and other crops in saline land reclamation. This review identifies potential breeding targets for enhancing alfalfa performance stability and general crop robustness for rising salt levels as well as to promote alfalfa applications in saline land management.

背景:随着土壤盐碱化水平以惊人的速度上升,气候变化和人为干预又加速了这一速度,人们越来越需要能够在盐碱地上生长的作物品种。紫花苜蓿(Medicago sativa)是一种冷季型多年生豆科作物,通常用作饲料、生物燃料原料和土壤改良剂。它通过固氮、固碳和改善土壤结构等方式,在农业循环性和可持续性方面展现出巨大的潜力。虽然紫花苜蓿传统上被认为是中等耐盐的品种,但现代紫花苜蓿品种显示出特殊的耐盐机制,可用于将紫花苜蓿培育成能够在盐碱地上生长的主要作物:紫花苜蓿的耐盐性是由多种级联生化和生理机制决定的。紫花苜蓿复杂的基因组结构和外源杂交特性在一定程度上促成了这些机制的形成,但另一方面也给分子和遗传研究带来了障碍。本综述首先概述了盐分对植物的一般影响,以及应对盐分引起的渗透胁迫、离子毒性和次生胁迫的广泛机制。其次,我们介绍了紫花苜蓿的防御和适应策略,如紫花苜蓿根系的可塑性、维持离子平衡的激素串扰、时空特异代谢物谱以及紫花苜蓿-根瘤菌联合体的保护。最后,确定并讨论了生理和分子盐胁迫反应研究的瓶颈,以及生物技术驱动的耐盐性改进:结论:了解形态解剖、生理和分子对盐度的反应对改良紫花苜蓿和其他盐碱地开垦作物至关重要。本综述确定了潜在的育种目标,以提高紫花苜蓿在盐度升高时的表现稳定性和一般作物的健壮性,并促进紫花苜蓿在盐碱地管理中的应用。
{"title":"Thriving in a salty future: morpho-anatomical, physiological, and molecular adaptations to salt stress in alfalfa (Medicago sativa L.) and other crops.","authors":"Xu Liu, J Theo M Elzenga, Jan Henk Venema, Kira J Tiedge","doi":"10.1093/aob/mcae152","DOIUrl":"https://doi.org/10.1093/aob/mcae152","url":null,"abstract":"<p><strong>Background: </strong>With soil salinity levels rising at an alarming rate, accelerated by climate change and human interventions, there is a growing need for crop varieties that can grow on saline soils. Alfalfa (Medicago sativa) is a cool-season perennial leguminous crop, commonly grown as forage, biofuel feedstock, and soil conditioner. It demonstrates significant potential for agricultural circularity and sustainability, for example by fixing nitrogen, sequestering carbon, and improving soil structures. Although alfalfa is traditionally regarded as moderately salt-tolerant species, modern alfalfa varieties display specific salt-tolerance mechanisms, which could be used to pave alfalfa's role as a leading crop able to grow on saline soils.</p><p><strong>Scope: </strong>Alfalfa's salt tolerance underlies a large variety of cascading biochemical and physiological mechanisms. These are partly enabled by alfalfa's complex genome structure and out-crossing nature, which on the other hand entail impediments for molecular and genetic studies. This review first summarizes the general effects of salinity on plants and the broad-ranging mechanisms for dealing with salt-induced osmotic stress, ion toxicity, and secondary stress. Secondly, we address defensive and adaptive strategies that have been described for alfalfa, such as the plasticity of alfalfa's root system, hormonal crosstalk for maintaining ion homeostasis, spatiotemporal specialized metabolite profiles, and the protection of alfalfa-rhizobia associations. Finally, bottlenecks for research of the physiological and molecular salt-stress responses as well as biotechnology-driven improvements of salt tolerance are identified and discussed.</p><p><strong>Conclusion: </strong>Understanding morpho-anatomical, physiological, and molecular responses to salinity is essential for the improvement of alfalfa and other crops in saline land reclamation. This review identifies potential breeding targets for enhancing alfalfa performance stability and general crop robustness for rising salt levels as well as to promote alfalfa applications in saline land management.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103745","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The highly dynamic satellitomes of cultivated wheat species. 栽培小麦物种的高动态卫星体。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-08-30 DOI: 10.1093/aob/mcae132
Ana Gálvez-Galván, Manuel A Garrido-Ramos, Pilar Prieto

Background and aims: Durum wheat, Triticum turgidum, and bread wheat, Triticum aestivum, are two allopolyploid species of very recent origin that have been subjected to intense selection programs during the thousands of years they have been cultivated. In this paper, we study the durum wheat satellitome and establish a comparative analysis with the previously published bread wheat satellitome.

Methods: We revealed the durum wheat satellitome using the satMiner protocol which is based on consecutive rounds of clustering of Illumina reads by RepeatExplorer2, and estimated abundance and variation for each identified satDNA with RepeatMasker v4.0.5. We have also performed a deep satDNA families characterization including chromosomal location by Fluorescence In Situ Hybridization (FISH) in durum wheat and its comparison with FISH patterns in bread wheat. Basic Local Alignment Search Tool (BLAST®) was used for trailing each satDNA in the assembly of durum wheat genome through NCBI's Genome Data Viewer (GDW) and the genome assemblies of both species were compared. Sequence divergence and consensus turnover rate (CTR) between homologous satDNA families of durum and bread wheat were estimated using MEGA11.

Key results: This study reveals that in an exceedingly short period, significant qualitative and quantitative changes have occurred in the set of satellite DNAs (satDNAs) of both species, with expansions/contractions of the number of repeats and the loci per satellite, different in each species, and a high rate of sequence change for most of these satellites, in addition to the emergence/loss of satDNAs not shared between the two species analysed. These evolutionary changes in satDNA are common between species but what is truly remarkable and novel about this study is that these processes have taken place in less than the last ~8000 years separating the two species, indicating an accelerated evolution of their satDNAs.

Conclusions: These results, together with the relationship of many of these satellites with transposable elements and the polymorphisms they generate at the level of centromeres and subtelomeric regions of their chromosomes, are analysed and discussed in the context of the evolutionary origin of these species and the selection pressure exerted by man throughout the history of their cultivation.

背景和目的:杜伦小麦(Triticum turgidum)和面包小麦(Triticum aestivum)是两个起源很晚的异源多倍体物种,在数千年的栽培过程中,它们都经历了严格的选育程序。本文研究了硬粒小麦的卫星组,并与之前发表的面包小麦卫星组进行了比较分析:我们使用 satMiner 协议揭示了硬质小麦卫星组,该协议基于 RepeatExplorer2 对 Illumina 读数的连续聚类,并使用 RepeatMasker v4.0.5 估计了每个已识别 satDNA 的丰度和变异。我们还通过荧光原位杂交(FISH)对硬质小麦的染色体位置等 satDNA 家族进行了深入鉴定,并将其与面包小麦的 FISH 模式进行了比较。通过 NCBI 的基因组数据查看器(GDW),使用基本局部比对搜索工具(BLAST®)对硬质小麦基因组组装中的每个 satDNA 进行追踪,并对两个物种的基因组组装进行比较。利用 MEGA11 估算了硬质小麦和面包小麦同源 satDNA 家族之间的序列差异和共识周转率(CTR):这项研究揭示,在极短的时间内,两个物种的卫星 DNA(satDNA)发生了重大的质和量的变化,每个物种的重复次数和每个卫星的位点都有不同程度的扩大/缩小,而且大多数卫星的序列变化率都很高,此外还出现/丢失了两个物种之间不共享的卫星 DNA。卫星DNA的这些进化变化在物种之间很常见,但这项研究真正引人注目和新颖之处在于,这些过程发生在两个物种相隔不到 8000 年的时间里,这表明它们的卫星DNA在加速进化:这些结果,连同其中许多卫星基因与转座元件的关系,以及它们在染色体中心粒和次同源区水平上产生的多态性,都在这些物种的进化起源和人类在其整个栽培历史中所施加的选择压力的背景下进行了分析和讨论。
{"title":"The highly dynamic satellitomes of cultivated wheat species.","authors":"Ana Gálvez-Galván, Manuel A Garrido-Ramos, Pilar Prieto","doi":"10.1093/aob/mcae132","DOIUrl":"https://doi.org/10.1093/aob/mcae132","url":null,"abstract":"<p><strong>Background and aims: </strong>Durum wheat, Triticum turgidum, and bread wheat, Triticum aestivum, are two allopolyploid species of very recent origin that have been subjected to intense selection programs during the thousands of years they have been cultivated. In this paper, we study the durum wheat satellitome and establish a comparative analysis with the previously published bread wheat satellitome.</p><p><strong>Methods: </strong>We revealed the durum wheat satellitome using the satMiner protocol which is based on consecutive rounds of clustering of Illumina reads by RepeatExplorer2, and estimated abundance and variation for each identified satDNA with RepeatMasker v4.0.5. We have also performed a deep satDNA families characterization including chromosomal location by Fluorescence In Situ Hybridization (FISH) in durum wheat and its comparison with FISH patterns in bread wheat. Basic Local Alignment Search Tool (BLAST®) was used for trailing each satDNA in the assembly of durum wheat genome through NCBI's Genome Data Viewer (GDW) and the genome assemblies of both species were compared. Sequence divergence and consensus turnover rate (CTR) between homologous satDNA families of durum and bread wheat were estimated using MEGA11.</p><p><strong>Key results: </strong>This study reveals that in an exceedingly short period, significant qualitative and quantitative changes have occurred in the set of satellite DNAs (satDNAs) of both species, with expansions/contractions of the number of repeats and the loci per satellite, different in each species, and a high rate of sequence change for most of these satellites, in addition to the emergence/loss of satDNAs not shared between the two species analysed. These evolutionary changes in satDNA are common between species but what is truly remarkable and novel about this study is that these processes have taken place in less than the last ~8000 years separating the two species, indicating an accelerated evolution of their satDNAs.</p><p><strong>Conclusions: </strong>These results, together with the relationship of many of these satellites with transposable elements and the polymorphisms they generate at the level of centromeres and subtelomeric regions of their chromosomes, are analysed and discussed in the context of the evolutionary origin of these species and the selection pressure exerted by man throughout the history of their cultivation.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bimodal pattern of allometric scaling along grapevine shoots. 葡萄树嫩枝异速缩放的双峰模式。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-08-30 DOI: 10.1093/aob/mcae146
Alaa Haj-Yahya, Yonatan Sorek, Uri Hochberg, Noa Ohana-Levi, Yotam Zait, Ilana Shtein

Background and aims: Each branch internode, and the organs growing on it, can be seen as a single morphological phytomer subunit, made of structurally and functionally interrelated components. However, allometric relationships between anatomy and morphology of these subunits remain unclear, particularly in the axial context. This study aims to address this knowledge gap, by measuring morpho-anatomical parameters and their allometric relationships along grapevine shoots.

Methods: To facilitate comparison, shoot length was normalized and a relative position index was calculated for each internode, ranging from 0 at the base to 1 at the apex. Scaling relationships between morpho-anatomical parameters along the axis were developed and validated by statistical modeling.

Key results: Most morpho-anatomical parameters displayed an axial behaviour of increasing then decreasing in size from base to apex, with the exception of shoot diameter and shoot vessel density. Relative position index of 0.2 acted as the data turning point for most variables analysed. During the first phase (relative position index below 0.2), the phytomer organs traits are uncoupled and show weak allometric correlation, and during the second phase the traits are strongly allometrically related.

Conclusions: Our findings suggest that allometric relationships along grapevine shoots are not constant- they exhibit a bimodal pattern, possibly influenced by seasonal temperatures. This work could aid managing productivity shifts in agricultural and natural systems under global climate change and add to basic knowledge of differentiation and development of growth units in plants.

背景和目的:每个节间分枝及其上生长的器官都可以看作是一个单一的植物形态亚单位,由结构和功能上相互关联的部分组成。然而,这些亚单位的解剖学和形态学之间的异构关系仍不清楚,尤其是在轴向背景下。本研究旨在通过测量葡萄树嫩枝的形态解剖参数及其异速关系来填补这一知识空白:为了便于比较,对嫩枝长度进行了归一化处理,并计算了每个节间的相对位置指数,从基部的 0 到顶端的 1。通过统计建模,建立并验证了沿轴线的形态解剖参数之间的比例关系:主要结果:除嫩枝直径和嫩枝血管密度外,大多数形态解剖参数显示出从基部到顶端先增大后减小的轴向行为。相对位置指数 0.2 是大多数分析变量的数据转折点。在第一阶段(相对位置指数低于 0.2),植物体器官性状不耦合,表现出弱的异速相关性,而在第二阶段,性状则表现出强的异速相关性:我们的研究结果表明,葡萄枝条的异速关系并不是一成不变的--它们呈现出双峰模式,可能受到季节性温度的影响。这项研究有助于管理全球气候变化下农业和自然系统的生产力变化,并丰富了有关植物生长单元分化和发育的基础知识。
{"title":"Bimodal pattern of allometric scaling along grapevine shoots.","authors":"Alaa Haj-Yahya, Yonatan Sorek, Uri Hochberg, Noa Ohana-Levi, Yotam Zait, Ilana Shtein","doi":"10.1093/aob/mcae146","DOIUrl":"https://doi.org/10.1093/aob/mcae146","url":null,"abstract":"<p><strong>Background and aims: </strong>Each branch internode, and the organs growing on it, can be seen as a single morphological phytomer subunit, made of structurally and functionally interrelated components. However, allometric relationships between anatomy and morphology of these subunits remain unclear, particularly in the axial context. This study aims to address this knowledge gap, by measuring morpho-anatomical parameters and their allometric relationships along grapevine shoots.</p><p><strong>Methods: </strong>To facilitate comparison, shoot length was normalized and a relative position index was calculated for each internode, ranging from 0 at the base to 1 at the apex. Scaling relationships between morpho-anatomical parameters along the axis were developed and validated by statistical modeling.</p><p><strong>Key results: </strong>Most morpho-anatomical parameters displayed an axial behaviour of increasing then decreasing in size from base to apex, with the exception of shoot diameter and shoot vessel density. Relative position index of 0.2 acted as the data turning point for most variables analysed. During the first phase (relative position index below 0.2), the phytomer organs traits are uncoupled and show weak allometric correlation, and during the second phase the traits are strongly allometrically related.</p><p><strong>Conclusions: </strong>Our findings suggest that allometric relationships along grapevine shoots are not constant- they exhibit a bimodal pattern, possibly influenced by seasonal temperatures. This work could aid managing productivity shifts in agricultural and natural systems under global climate change and add to basic knowledge of differentiation and development of growth units in plants.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103739","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Annals of botany
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1