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Better out than in: faecal matrix inhibits establishment success after waterfowl endozoochory. 出比入好:粪便基质抑制水禽内胆后建立成功。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-20 DOI: 10.1093/aob/mcaf192
Iciar Jiménez-Martín, Andy J Green, Nándor Szabó, Balázs András Lukács, Orsolya Vincze, Ádám Lovas-Kiss

Background and aims: Many plant species undergo long-distance dispersal through migratory waterbirds. However, there is little information about the effectiveness of this dispersal, especially regarding the chances of plant establishment and the impact of gut passage or the faecal matrix on plant germination, growth and reproductive investment in seeds.

Methods: In a greenhouse experiment, we addressed these questions using an annual mudflat species, Juncus bufonius (Juncaceae), and a perennial emergent aquatic species, Eleocharis palustris (Cyperaceae), whose seeds are dispersed by many waterbird species in Europe. We planted seeds directly in soil or within mallard faeces placed on soil, using both control seeds and seeds that survived gut passage through mallards. Over the following 11 weeks, we quantified germination and plant performance.

Key results: Gut passage reduced germination time of J. bufonius when there was no faecal matrix, and it increased asymptotic height of E. palustris. Presence of the faecal matrix hindered germinability, plant growth and final biomass for both species, along with total seed production for J. bufonius. Presence of the faecal matrix slowed down germination in E. palustris, but had the opposite effect for J. bufonius. It was also associated with greater relative investment in seeds in J. bufonius (more seeds per unit biomass), probably as a consequence of later germination. In both species, earlier germination increased final biomass (and seed production in J. bufonius).

Conclusions: Our results support the importance of waterbird endozoochory in plant dispersal but suggest that it might be more effective when faeces disintegrate, such as when egested into water or disaggregated on land (e.g. by insects). Previous studies with other plants have recorded accelerated germination following waterbird gut passage, and our results show that this can benefit plant fitness.

背景与目的:许多植物物种通过迁徙的水鸟进行远距离传播。然而,关于这种传播的有效性的信息很少,特别是关于植物建立的机会,以及肠道或粪便基质对植物发芽,生长和种子生殖投资的影响。方法:在温室实验中,我们利用一年生泥滩物种junus bufonius (Juncaceae)和多年生新兴水生物种Eleocharis palustris (Cyperaceae)来解决这些问题,这些物种的种子在欧洲的许多水鸟物种中传播。我们将种子直接种在土壤中,或将种子放入放置在土壤上的绿头鸭粪便中,同时使用对照种子和通过绿头鸭肠道存活的种子。在接下来的11周内,我们量化了发芽和植株性能。关键结果:在没有粪便基质的情况下,肠道通道缩短了布氏绦虫的萌发时间,增加了palustris的渐近高度。粪便基质的存在阻碍了这两个物种的发芽能力、植物生长和最终生物量,同时也影响了黄颡鱼的总种子产量。粪便基质的存在减缓了palustris的发芽,而对jj . bufonius则有相反的效果。这也与黄叶菊种子的相对投资(每单位生物量更多的种子)有关,这可能是发芽较晚的结果。在这两个物种中,较早的萌发增加了最终生物量(以及黄叶菊的种子产量)。结论:我们的研究结果支持水鸟内毒素在植物传播中的重要性,但表明当粪便分解时,如排入水中或在陆地上分解(如昆虫)时,它可能更有效。先前对其他植物的研究记录了水鸟肠道通过后加速发芽,我们的研究结果表明这有利于植物的适应性。
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引用次数: 0
Ecological niche differentiation mediates near complete premating reproductive isolation within the Gladiolus carneus (Iridaceae) species complex. 生态位分化介导了剑兰(鸢尾科)种群中近乎完全的早熟生殖隔离。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-20 DOI: 10.1093/aob/mcaf172
Katharine L Khoury, Shelley Edwards, Ethan Newman

Background and aims: Ecological niche differentiation is well associated with intraspecific divergence of functional traits, which may lead to the evolution of premating reproductive isolation. However, the link between the ecological niches, trait divergence and premating isolation remains poorly understood. This is particularly pertinent in hyperdiverse areas, such as the Cape Floristic Region of South Africa, where fine-scale ecological heterogeneity has been hypothesized as a major driver of speciation. Using the polymorphic geophyte Gladiolus carneus, endemic to the Cape Floristic Region, we test whether ecological niche differentiation mediates premating reproductive isolation.

Methods: We first tested whether putative ecotypes of G. carneus were distinct based on their floral and vegetative morphology. Next, we documented the abiotic niche, flowering phenology and pollination niche of each putative ecotype and tested whether any resulting niche differentiation causes premating reproductive isolation.

Key results: Seven distinct ecotypes were identified. Using niche modelling and multivariate analyses, we found that these ecotypes occupied distinct abiotic niches, resulting in strong ecogeographic isolation. They also had distinct flowering times, causing varying strengths of phenological isolation. For the pollinator niche, we found that all sampled populations were pollinated by one of three highly effective functional pollinators; however, at the ecotypic level there were no consistent trends, leading to varying strengths in pollinator-mediated isolation. Across all ecotypes, ecogeographic isolation was the strongest barrier to gene flow, which, combined with phenological and pollinator-mediated isolation, caused near complete premating reproductive isolation.

Conclusions: These results suggest that ecological niche differentiation between G. carneus ecotypes might be contributing to incipient speciation within the species complex and further suggest that ecological niche differentiation may be a major driver of speciation in the hyperdiverse Cape Floristic Region.

背景与目的:生态位分化与功能性状的种内分化密切相关,这可能导致早熟生殖隔离的进化。然而,生态位、性状分化和早熟隔离之间的联系仍然知之甚少。这在高度多样化的地区尤其重要,如南非开普植物区(Cape Floristic Region, CFR),在那里,精细尺度的生态异质性被假设为物种形成的主要驱动力。本研究以CFR特有的多态地植物剑兰(Gladiolus carneus)为研究对象,考察了生态位分化是否介导了早熟生殖隔离。方法:我们首先根据其花和营养形态来检验假定的鹿心草生态型是否不同。接下来,我们记录了每个假定生态型的非生物生态位、开花物候和授粉生态位,并进一步测试了是否有任何由此产生的生态位分化导致了早熟生殖隔离。关键结果:鉴定出7种不同的生态型。利用生态位模型和多变量分析,我们发现这些生态型占据了不同的非生物生态位,导致了强烈的生态地理隔离。它们也有不同的开花时间,造成不同的物候隔离强度。对于传粉者生态位,我们发现所有样本种群都由三种高效的功能性传粉者之一授粉;然而,在生态型水平上,传粉媒介隔离强度的变化趋势并不一致。在所有生态型中,生态地理隔离是最强的基因流屏障,它与物候和传粉媒介的隔离相结合,导致几乎完全的早熟生殖隔离。结论:上述研究结果表明,在物种复群中,不同生态位类型间的生态位分化可能促成了早期物种的形成,并进一步表明生态位分化可能是超多样性开普区物种形成的主要驱动因素。
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引用次数: 0
Making a clean break: contrasting leaf abscission dynamics across temperate leaf habits. 使一个干净的打破:对比叶片脱落动态跨温带叶片习惯。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-18 DOI: 10.1093/aob/mcaf327
Cade N Kane, Ian M Rimer, Scott A M McAdam

Background and aims: Leaf abscission is the process whereby plants actively shed leaves through physical detachment at the abscission zone (AZ). Leaf abscission is generally preceded by senescence, during which there is an active reclamation of leaf nutrients. The physiological regulation of leaf abscission remains poorly studied in trees, with a suite of environmental and endogenous signals believed to regulate the process. Here, we sought to characterize the role of water status, leaf gas exchange, senescence, and the phytohormone abscisic acid (ABA) in regulating leaf abscission in temperate trees.

Methods: We developed a novel method to quantify AZ competency (AZC) and simultaneously measured leaf gas exchange, chlorophyll content, water potential, AZC, and ABA levels from late summer until leaf death in four temperate tree species representing deciduous, brevi-deciduous, and marcescent leaf habits. We tested for associations between changes in key physiological traits and AZC in all species.

Key results: The two deciduous species showed contrasting physiological patterns leading to leaf abscission: one species degraded chlorophyll and ceased photosynthesis before complete AZC, while the other retained chlorophyll and continued photosynthesis until complete AZC. The brevi-deciduous species degraded most chlorophyll but developed AZC gradually over a longer period. The marcescent species' leaves fully senesced but did not develop AZC.

Conclusions: These findings demonstrate that leaf senescence and abscission are distinct and variably timed processes across temperate tree species. These results have implications for predicting future leaf lifespan as the climate changes, with the characterization of physiological diversity in the regulation of leaf abscission profoundly understudied.

背景和目的:叶片脱落是植物在脱落区通过物理脱离主动脱落叶片的过程。叶片脱落通常先于衰老,在此期间,叶片营养物质有一个积极的回收。在树木中,叶片脱落的生理调控研究仍然很少,据信有一系列环境和内源性信号调节这一过程。在这里,我们试图描述水分状况、叶片气体交换、衰老和植物激素脱落酸(ABA)在调节温带树木叶片脱落中的作用。方法:我们开发了一种量化AZC的新方法,并同时测量了4种温带树种的叶片气体交换、叶绿素含量、水势、AZC和ABA水平,这些树种分别代表落叶、短落叶和软质落叶,从夏末到叶片死亡。我们测试了所有物种中关键生理性状的变化与AZC之间的关系。关键结果:两种落叶松表现出截然不同的导致叶片脱落的生理模式:一种在完全AZC之前降解叶绿素并停止光合作用,而另一种保留叶绿素并继续光合作用直到完全AZC。短落叶树种叶绿素降解最多,但在较长时间内逐渐发育AZC。粘质种的叶片完全衰老,但未发生AZC。结论:这些研究结果表明,在温带树种中,叶片衰老和脱落是不同的、不同时间的过程。这些结果对气候变化下叶片寿命的预测具有重要意义,对叶片脱落调控的生理多样性特征的研究还有待深入。
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引用次数: 0
Genomic insights into the rapid diversification of Petunia in a biodiversity hotspot in the South American grasslands. 对南美洲草原生物多样性热点地区矮牵牛快速多样化的基因组见解。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-17 DOI: 10.1093/aob/mcaf329
Pedro Henrique Pezzi, Leonardo Tresoldi Gonçalves, Alice Backes, Giovanna Câmara Giudicelli, Caroline Turchetto, Aureliano Bombarely, Loreta Brandão de Freitas

Background and aims: Petunia provides a valuable opportunity to study speciation in a biodiversity hotspot, focusing on species with varied floral syndromes. Here, we examined a population displaying a range of flower colors, from light to dark purple, to determine its origin and explore the diversification patterns of Petunia.

Methods: We employed Genotyping-by-Sequencing on multiple individuals from different species to assess population structure and hybridization patterns, thereby revealing insights into the evolutionary history of unusual Petunia populations through various demographic models.

Key results: Population structure analyses revealed a distinct genetic component unique to the atypical individuals, with no evidence supporting interspecific hybrid origins. Demographic models and species delimitation methods produced conflicting results, likely due to the rapid diversification within the genus Petunia.

Conclusions: Our findings indicate that tracing the evolutionary origins of Petunia species in a biodiversity hotspot is challenging; however, it offers a valuable opportunity to study speciation in the Neotropics and flower color evolution at both the species and population levels.

背景与目的:矮牵牛为研究生物多样性热点地区的物种形成提供了宝贵的机会,重点研究具有不同花综合征的物种。在这里,我们检查了一个显示从浅紫色到深紫色的花朵颜色范围的种群,以确定其起源并探索矮牵牛的多样化模式。方法:对不同物种的多个个体进行基因分型测序,评估其种群结构和杂交模式,从而通过不同的人口统计学模型揭示罕见矮牵牛种群的进化史。主要结果:种群结构分析揭示了非典型个体特有的独特遗传成分,没有证据支持种间杂交起源。人口统计学模型和物种划分方法产生了相互矛盾的结果,可能是由于矮牵牛属内部的快速多样化。结论:在生物多样性热点地区寻找矮牵牛属物种的进化起源具有挑战性;然而,它为在物种和种群水平上研究新热带地区的物种形成和花的颜色进化提供了宝贵的机会。
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引用次数: 0
Timing, patterns, and environmental drivers of wood formation in Larix olgensis in Changbai Mountain, Northeast China. 长白山落叶松木材形成的时间、模式及环境驱动因素
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-17 DOI: 10.1093/aob/mcaf326
Nipeng Qian, Chunchao Dong, Kuan Shi, Qijing Liu, Guang Zhou

Background and aims: The temperate montane coniferous forests in Northeast Asia are among the ecosystems most sensitive to ongoing global warming. However, the timing, patterns, and environmental controls of wood formation in dominant tree species remain poorly understood.

Methods: In this study, we investigated the intra-annual wood formation of Larix olgensis A. Herry along a 750-1450 m elevational gradient in Changbai Mountain, Northeast China, using weekly microcoring and high-resolution climatic data. Environmental drivers of growth onset, peak, and cessation were identified using multiple linear regression models, and the relative contributions of climatic variables to seasonal radial growth were quantified using linear mixed-effects models.

Key results: We found that for every 100 m increase in elevation, the onset of wood formation was delayed by approximately 3.3 days, and the growing season was shortened by around 3.5 days. Growth onset was primarily predicted by photoperiod and growing degree days (GDD), while peak growth was jointly influenced by photoperiod and precipitation. Growth cessation was strongly predicted by photoperiod, with additional contributions from cold degree days (CDD) and seasonal precipitation. Weekly radial growth was best explained by photoperiod and temperature, with vapor pressure deficit showing a weak but significant positive effect, and soil water content exhibiting negative relationship with growth.

Conclusions: These findings demonstrate that photoperiod consistently regulates both the timing and seasonal patterns of wood formation in L. olgensis, while GDD and CDD played distinct and significant roles in predicting the onset and cessation of secondary growth in spring and autumn, respectively. This study provides valuable insight into the phase-specific climatic controls on wood formation and offers a basis for predicting the response of temperate coniferous forests to future climate change.

背景与目的:东北亚温带山地针叶林是对全球变暖最敏感的生态系统之一。然而,优势树种木材形成的时间、模式和环境控制仍然知之甚少。方法:利用周微芯法和高分辨率气候资料,对长白山750 ~ 1450 m海拔梯度的长白山落叶松(Larix olgensis a. Herry)年际木材形成过程进行了研究。利用多元线性回归模型确定了生长开始、高峰和停止的环境驱动因素,并利用线性混合效应模型量化了气候变量对季节性径向生长的相对贡献。研究发现,海拔每升高100 m,木材形成的开始时间就会推迟约3.3天,生长季节缩短约3.5天。光周期和生长度数(GDD)是预测生长开始的主要因子,而生长高峰受光周期和降水的共同影响。光周期对生长停止有很强的预测作用,冷度日数(CDD)和季节性降水也有额外的贡献。光周期和温度最能解释周径向生长,水汽压亏缺对周径向生长有微弱但显著的正向影响,土壤含水量与周径向生长呈负相关。结论:上述结果表明,光周期对长叶松木材形成的时间和季节模式具有一致的调控作用,而GDD和CDD分别对春季和秋季次生生长的开始和停止具有显著的预测作用。该研究为揭示气候对木材形成的阶段性控制提供了有价值的见解,并为预测温带针叶林对未来气候变化的响应提供了依据。
{"title":"Timing, patterns, and environmental drivers of wood formation in Larix olgensis in Changbai Mountain, Northeast China.","authors":"Nipeng Qian, Chunchao Dong, Kuan Shi, Qijing Liu, Guang Zhou","doi":"10.1093/aob/mcaf326","DOIUrl":"https://doi.org/10.1093/aob/mcaf326","url":null,"abstract":"<p><strong>Background and aims: </strong>The temperate montane coniferous forests in Northeast Asia are among the ecosystems most sensitive to ongoing global warming. However, the timing, patterns, and environmental controls of wood formation in dominant tree species remain poorly understood.</p><p><strong>Methods: </strong>In this study, we investigated the intra-annual wood formation of Larix olgensis A. Herry along a 750-1450 m elevational gradient in Changbai Mountain, Northeast China, using weekly microcoring and high-resolution climatic data. Environmental drivers of growth onset, peak, and cessation were identified using multiple linear regression models, and the relative contributions of climatic variables to seasonal radial growth were quantified using linear mixed-effects models.</p><p><strong>Key results: </strong>We found that for every 100 m increase in elevation, the onset of wood formation was delayed by approximately 3.3 days, and the growing season was shortened by around 3.5 days. Growth onset was primarily predicted by photoperiod and growing degree days (GDD), while peak growth was jointly influenced by photoperiod and precipitation. Growth cessation was strongly predicted by photoperiod, with additional contributions from cold degree days (CDD) and seasonal precipitation. Weekly radial growth was best explained by photoperiod and temperature, with vapor pressure deficit showing a weak but significant positive effect, and soil water content exhibiting negative relationship with growth.</p><p><strong>Conclusions: </strong>These findings demonstrate that photoperiod consistently regulates both the timing and seasonal patterns of wood formation in L. olgensis, while GDD and CDD played distinct and significant roles in predicting the onset and cessation of secondary growth in spring and autumn, respectively. This study provides valuable insight into the phase-specific climatic controls on wood formation and offers a basis for predicting the response of temperate coniferous forests to future climate change.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145767040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Foliar Epichloë fungal endophytes affected the soil biochemistry via changes in the expression of root genes and exudates within their host plants. 叶面Epichloë真菌内生菌通过改变寄主植物根系基因表达和分泌物影响土壤生化。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-17 DOI: 10.1093/aob/mcaf330
Xiumei Nie, Jinjin Liang, Daniel A Bastías, Xingxu Zhang, Zhibiao Nan

Background and aims: Soils are reservoirs of key nutrients and enzymes for plant fitness and ecosystem productivity. Epichloë fungal endophytes are well-known to shape plant performance, yet the mechanistic link between Epichloë-mediated changes on plant root genes and root exudates with soil biochemistry is not entirely clear. We studied the effect of the foliar endophyte of grasses Epichloë gansuensis (C.J. Li & Nan) on the soil biochemistry and composition/abundance of host root genes and exudates. We hypothesized that Epichloë would affect soil biochemistry, and that these changes would be associated with endophyte-mediated alterations in root genes and exudates.

Methods: Soil samples, root tissues, and root exudates were harvested from field plots of Achnatherum inebrians (Hance) Keng plants with and without E. gansuensis endophytes. We measured concentrations/activities of nutrients/enzymes in bulk and rhizosphere soils, together with the composition and expression of root genes and exudates that were determined via high resolution LC-MS and RNA-Seq.

Key results: Epichloë altered concentrations/activities of several nutrients/enzymes in both soil compartments (e.g., organic carbon, β-glucosidase), with larger effects in the rhizosphere soil than bulk soil. Epichloë also modified the expression of root genes (e.g., AHCY) and exudates (e.g., malate, ethylene), with several of the changes in root exudates aligned with the altered expression of root genes (e.g., high malate abundance was associated with enhanced expression of their biosynthesis genes). Many of the Epichloë-derived changes in soil nutrients and enzymes levels were functionally associated with the host plant release of bioactive root exudates affected by the endophyte.

Conclusions: Foliar Epichloë endophytes can shape soil biochemistry, root gene expression, and root exudate abundance, and the existence of functional links between soil biochemistry and root exudates in plant-endophyte associations.

背景与目的:土壤是植物适应性和生态系统生产力的关键养分和酶的储存库。Epichloë真菌内生菌是众所周知的塑造植物性能,但Epichloë-mediated植物根基因和根分泌物变化与土壤生物化学之间的机制联系尚不完全清楚。研究了Epichloë gansuensis (C.J. Li & Nan)叶片内生菌对土壤生化、寄主根基因组成/丰度及分泌物的影响。我们假设Epichloë会影响土壤生物化学,并且这些变化可能与内生菌介导的根基因和渗出物的改变有关。方法:采集带和不带内生菌的酒牛膝草(Achnatherum inebrians (Hance) Keng)植株的土壤样品、根组织和根分泌物。我们测量了散装土壤和根际土壤中营养物质/酶的浓度/活性,并通过高分辨率LC-MS和RNA-Seq测定了根基因和渗出物的组成和表达。关键结果:Epichloë改变了两个土壤区室中几种营养物质/酶的浓度/活性(例如,有机碳,β-葡萄糖苷酶),在根际土壤中的影响大于块状土壤。Epichloë也改变了根基因(如AHCY)和渗出物(如苹果酸盐、乙烯)的表达,根渗出物中的一些变化与根基因表达的改变一致(例如,苹果酸盐丰度高与其生物合成基因的表达增强有关)。许多Epichloë-derived土壤养分和酶水平的变化在功能上与受内生菌影响的寄主植物释放生物活性根分泌物有关。结论:叶面Epichloë内生菌可以影响土壤生化、根基因表达和根分泌物丰度,在植物-内生菌关系中,土壤生化和根分泌物之间存在功能联系。
{"title":"Foliar Epichloë fungal endophytes affected the soil biochemistry via changes in the expression of root genes and exudates within their host plants.","authors":"Xiumei Nie, Jinjin Liang, Daniel A Bastías, Xingxu Zhang, Zhibiao Nan","doi":"10.1093/aob/mcaf330","DOIUrl":"https://doi.org/10.1093/aob/mcaf330","url":null,"abstract":"<p><strong>Background and aims: </strong>Soils are reservoirs of key nutrients and enzymes for plant fitness and ecosystem productivity. Epichloë fungal endophytes are well-known to shape plant performance, yet the mechanistic link between Epichloë-mediated changes on plant root genes and root exudates with soil biochemistry is not entirely clear. We studied the effect of the foliar endophyte of grasses Epichloë gansuensis (C.J. Li & Nan) on the soil biochemistry and composition/abundance of host root genes and exudates. We hypothesized that Epichloë would affect soil biochemistry, and that these changes would be associated with endophyte-mediated alterations in root genes and exudates.</p><p><strong>Methods: </strong>Soil samples, root tissues, and root exudates were harvested from field plots of Achnatherum inebrians (Hance) Keng plants with and without E. gansuensis endophytes. We measured concentrations/activities of nutrients/enzymes in bulk and rhizosphere soils, together with the composition and expression of root genes and exudates that were determined via high resolution LC-MS and RNA-Seq.</p><p><strong>Key results: </strong>Epichloë altered concentrations/activities of several nutrients/enzymes in both soil compartments (e.g., organic carbon, β-glucosidase), with larger effects in the rhizosphere soil than bulk soil. Epichloë also modified the expression of root genes (e.g., AHCY) and exudates (e.g., malate, ethylene), with several of the changes in root exudates aligned with the altered expression of root genes (e.g., high malate abundance was associated with enhanced expression of their biosynthesis genes). Many of the Epichloë-derived changes in soil nutrients and enzymes levels were functionally associated with the host plant release of bioactive root exudates affected by the endophyte.</p><p><strong>Conclusions: </strong>Foliar Epichloë endophytes can shape soil biochemistry, root gene expression, and root exudate abundance, and the existence of functional links between soil biochemistry and root exudates in plant-endophyte associations.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145767046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogenomic analyses of the diverse desert-alpine plant lineage Cistantheae. 荒漠高寒不同植物系的系统发育分析。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-16 DOI: 10.1093/aob/mcaf319
Anri Chomentowska, Sophie G Dauerman, Nora Heaphy, Leonardo Gaspar, Pablo M Molina, C Matt Guilliams, R Matthew Ogburn, Lillian P Hancock, Joseph A M Holtum, Andrés Moreira-Muñoz, Mónica Arakaki, Patrick W Sweeney, Iris E Peralta, Erika J Edwards

Background and aims: Desert and alpine environments, though ecologically distinct, often share similar environmental stressors such as drought and high radiation. Various plant lineages traverse both biomes, which is often associated with transitions in life history strategy, where annuality is more often associated with drier desert habitats and perenniality more common in higher elevations. One such lineage is Cistantheae (Montiaceae), a morphologically diverse herbaceous clade in western North and South America. We aimed to infer a robust phylogeny of the clade as a foundation for taxonomic and comparative work.

Methods: We used double-digest RADSeq to generate reduced-representation genomic data from over 160 samples representing 48 putative species in Cistantheae. Maximum likelihood and coalescent-based phylogenetic methods were utilized to infer evolutionary relationships across the full clade and within major subclades. We tested for signatures of admixture and introgressive gene flow, and reconstructed ancestral life history and climate niche to identify patterns of correlated evolution.

Key results: We inferred a well-resolved phylogeny of Cistantheae, providing strong support for relationships among subclades within Cistantheae. While many species relationships were clarified, we also found evidence of rampant gene flow and incomplete lineage sorting, particularly within the annual Cistanthe clade from the Atacama Desert. Life history is evolutionarily labile across the clade and was strongly correlated with temperature and precipitation-related bioclimatic variables: annuals tend to occur in hotter, drier environments, while perennials in cooler and wetter habitats. Elevational range was also evolutionarily labile, with several species occupying broad elevational gradients.

Conclusions: We present the first densely sampled phylogenomic analysis of Cistantheae, providing key insights into species relationships in the clade. Repeated transitions in life history and climate niche, alongside wide elevational ranges, suggest that many Cistantheae species may be preadapted to both arid and montane habitats. This phylogeny will underpin further comparative, taxonomic, and phylogenomic studies in this ecologically important lineage.

背景和目的:沙漠和高山环境虽然在生态上不同,但往往具有相似的环境压力源,如干旱和高辐射。不同的植物谱系穿越这两个生物群系,这通常与生活史策略的转变有关,其中一年生更常与干燥的沙漠栖息地有关,而多年生在高海拔地区更常见。一个这样的谱系是肉苁茸科,一个形态多样的草本分支,分布在北美和南美西部。我们的目的是推断一个强大的进化枝的系统发育作为分类和比较工作的基础。方法:采用双消化RADSeq方法,从肉苁苁科48种推定物种的160多个样本中生成简化表示的基因组数据。利用最大似然和聚结为基础的系统发育方法来推断整个分支和主要亚分支之间的进化关系。通过对混合和渐渗基因流特征的检测,以及对祖先生活史和气候生态位的重建,确定了相关的进化模式。关键结果:我们推断了肉苁苣亚科的系统发育,为肉苁苣亚分支之间的关系提供了强有力的支持。虽然许多物种之间的关系得到了澄清,但我们也发现了猖獗的基因流动和不完整的谱系分类的证据,特别是在阿塔卡马沙漠的年度Cistanthe分支中。整个进化支系的生活史在进化上是不稳定的,并且与温度和降水相关的生物气候变量密切相关:一年生植物往往发生在更热、更干燥的环境中,而多年生植物则发生在更冷、更潮湿的栖息地。海拔范围也具有进化不稳定性,一些物种占据了较宽的海拔梯度。结论:我们提出了第一个密集采样的肉苁苣科系统基因组分析,为该分支的物种关系提供了关键的见解。生命历史和气候生态位的反复变化,以及广泛的海拔范围,表明许多石竹科物种可能预先适应了干旱和山地栖息地。这一系统发育将为这一重要生态学谱系的进一步比较、分类和系统基因组研究奠定基础。
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引用次数: 0
Time since the last fire and climate seasonality reveal rhythmic and annual growth rates of Cerrado's woody plants. 自上次火灾以来的时间和气候季节性揭示了塞拉多木本植物的节奏和年增长率。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-16 DOI: 10.1093/aob/mcaf324
Marco Antonio Chiminazzo, Alessandra Fidelis, Felipe Alvarez, Tristan Charles-Dominique

Background and aims: Growth patterns in tropical savanna woody plants remain poorly understood across their vast diversity of strategies and plant forms. Something still little known is whether tropical woody species exhibit rhythmic or seasonal growth. This study investigates growth rhythmicity in Cerrado woody species, focusing on their post-fire resprouting patterns and their relationship with rainfall seasonality and fire.

Methods: We analyzed the number and characteristics of growth units produced after fire events (2020 and 2021 wildfires) in 21 Cerrado species. Satellite imagery and morphological markers along stems - such as internode length and bud scars - were used to assess growth cycles.

Key results: Cerrado species exhibited clear annual growth, typically producing one growth unit per year, closely aligned with the rainy season. Morphological traits reliably marked these cycles. Primary growth was consistently greater in the first growth unit produced after fire, likely due to increased carbohydrate allocation and reduced apical dominance of previous existing stems. This enhanced growth may help position foliage above future flame zones, improving survival. As species exhibited an annual growth pattern, we observed synchrony between the number of growth units and the number of years since the last fire.

Conclusions: Woody plants in the Cerrado grow through annual growth units formed from buds with preformed structures that elongate during the rainy season. The extent of this growth varies among species and individual life histories. Fire, a frequent disturbance, stimulates the production of larger growth units. This response indicates that woody plants can rapidly rebuild aboveground biomass after burning, likely supported by stored carbohydrates and the release of apical dominance. These patterns highlight the resilience of Cerrado vegetation. To deepen our understanding of tropical plant development, future work should relate growth units to species phenology, rainfall variability, and vegetation types.

背景和目的:热带稀树草原木本植物的生长模式在其巨大的多样性策略和植物形态方面仍然知之甚少。热带木本物种的生长是有节奏的还是季节性的,这一点仍然鲜为人知。本文研究了塞拉多木本植物的生长节律,重点研究了其火灾后的呼吸模式及其与降雨季节和火灾的关系。方法:我们分析了21种塞拉多(Cerrado)物种在火灾事件(2020年和2021年野火)后产生的生长单位的数量和特征。卫星图像和茎上的形态标记——如节间长度和芽痕——被用来评估生长周期。主要结果:塞拉多物种表现出明显的年生长,通常每年产生一个生长单位,与雨季密切相关。形态特征可靠地标记了这些循环。在火灾后产生的第一个生长单元中,初生生长始终更大,可能是由于增加了碳水化合物分配和减少了先前现有茎的顶端优势。这种增强的生长可能有助于将叶子置于未来的火焰区域上方,提高存活率。由于物种表现出年生长模式,我们观察到生长单位数量与最后一次火灾以来的年数具有同步性。结论:塞拉多的木本植物是通过一年生单位生长的,这些单位是由芽形成的,它们的预制结构在雨季会拉长。这种生长的程度因物种和个体的生活史而异。火,一个频繁的干扰,刺激生产更大的生长单位。这一反应表明木本植物在燃烧后可以快速重建地上生物量,这可能是由于储存的碳水化合物和顶端优势释放的支持。这些模式突出了塞拉多植被的恢复力。为了加深我们对热带植物发育的理解,未来的工作应该将生长单位与物种物候、降雨变异性和植被类型联系起来。
{"title":"Time since the last fire and climate seasonality reveal rhythmic and annual growth rates of Cerrado's woody plants.","authors":"Marco Antonio Chiminazzo, Alessandra Fidelis, Felipe Alvarez, Tristan Charles-Dominique","doi":"10.1093/aob/mcaf324","DOIUrl":"https://doi.org/10.1093/aob/mcaf324","url":null,"abstract":"<p><strong>Background and aims: </strong>Growth patterns in tropical savanna woody plants remain poorly understood across their vast diversity of strategies and plant forms. Something still little known is whether tropical woody species exhibit rhythmic or seasonal growth. This study investigates growth rhythmicity in Cerrado woody species, focusing on their post-fire resprouting patterns and their relationship with rainfall seasonality and fire.</p><p><strong>Methods: </strong>We analyzed the number and characteristics of growth units produced after fire events (2020 and 2021 wildfires) in 21 Cerrado species. Satellite imagery and morphological markers along stems - such as internode length and bud scars - were used to assess growth cycles.</p><p><strong>Key results: </strong>Cerrado species exhibited clear annual growth, typically producing one growth unit per year, closely aligned with the rainy season. Morphological traits reliably marked these cycles. Primary growth was consistently greater in the first growth unit produced after fire, likely due to increased carbohydrate allocation and reduced apical dominance of previous existing stems. This enhanced growth may help position foliage above future flame zones, improving survival. As species exhibited an annual growth pattern, we observed synchrony between the number of growth units and the number of years since the last fire.</p><p><strong>Conclusions: </strong>Woody plants in the Cerrado grow through annual growth units formed from buds with preformed structures that elongate during the rainy season. The extent of this growth varies among species and individual life histories. Fire, a frequent disturbance, stimulates the production of larger growth units. This response indicates that woody plants can rapidly rebuild aboveground biomass after burning, likely supported by stored carbohydrates and the release of apical dominance. These patterns highlight the resilience of Cerrado vegetation. To deepen our understanding of tropical plant development, future work should relate growth units to species phenology, rainfall variability, and vegetation types.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145761993","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inconsistent relationships detected between seed size, shape, and persistence for different plant functional groups in the Pannonian flora. 潘诺尼亚区系中不同植物功能类群的种子大小、形状和持久性之间存在不一致的关系。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-12 DOI: 10.1093/aob/mcaf322
Viktória Törő-Szijgyártó, Péter Török, Katalin Tóth, Hajnalka Málik-Roffa, Luis Roberto Guallichico Suntaxi, Szilvia Madar, Gergely Kovacsics-Vári, Andrea McIntosh-Buday, Patricia Díaz Cando, Judit Sonkoly

Background and aims: Knowledge on seed persistence is vital from both theoretical and practical considerations but directly collecting persistence data for many species is unfeasible. Therefore, there is a need to identify traits associated with seed persistence, but studies about the effects of seed size and shape on persistence yielded results varying across regions. We studied 392 species of the Pannonian flora (Central Europe) to asses (i) how seed mass and shape are related to seed persistence, (ii) whether this relationship is consistent across plant functional groups, and (iii) whether seed mass and shape are correlated in different functional groups?

Methods: We collected data on the seed mass and persistence of species and performed measurements to calculate their Seed Shape Index, with higher values indicating greater deviation from sphericity. To account for phylogenetic non-independence, we analysed how seed mass and Seed Shape Index affect persistence in all herbaceous species and separately in four plant functional groups using phylogenetic logistic regressions. To test how seed mass and shape are related to each other in these groups, we applied PGLS regression.

Key results: Across all species, both seed mass and Seed Shape Index were negatively related to persistence, with seed mass having a stronger association. The same relationship was observed in forbs and short-lived species, but only seed shape was related to persistence in graminoid species. The relationship between seed mass and seed shape also varied between functional groups.

Conclusions: Consistent with many studies in other floras, both seed mass and shape were negatively related to persistence in the Pannonian flora after accounting for phylogeny. However, only seed shape was associated with persistence in graminoid species, suggesting that different factors may be at play in forbs and graminoids. Therefore, future studies of this relationship may need to treat and analyse graminoids separately.

背景和目的:从理论和实践的角度考虑,种子持久性的知识是至关重要的,但直接收集许多物种的持久性数据是不可行的。因此,有必要确定与种子持久性相关的性状,但关于种子大小和形状对持久性影响的研究得出了不同地区的结果。我们研究了392种潘诺尼亚植物区系(中欧),以评估(i)种子质量和形状与种子持久性的关系,(ii)这种关系在植物功能群之间是否一致,以及(iii)种子质量和形状在不同功能群中是否相关。方法:收集种子质量和持久性数据,计算种子形状指数(seed Shape Index),数值越大,与球形度偏差越大。为了解释系统发育的非独立性,我们使用系统发育逻辑回归分析了种子质量和种子形状指数如何影响所有草本物种的持久性,并分别在四个植物功能类群中影响持久性。为了测试种子质量和形状在这些组中的相互关系,我们应用了PGLS回归。关键结果:在所有物种中,种子质量和种子形状指数都与持久性呈负相关,其中种子质量的相关性更强。在禾本科植物和短寿植物中也观察到相同的关系,但在禾本科植物中只有种子形状与持久性有关。籽粒质量与籽粒形状的关系在不同官能团之间也存在差异。结论:与其他植物区系的许多研究一致,在考虑系统发育后,种子质量和形状与潘诺尼亚区系的持久性呈负相关。然而,只有种子形状与禾本科植物的持久性有关,这表明不同的因素可能在forbs和禾本科植物中起作用。因此,未来对这种关系的研究可能需要分别对待和分析禾本科植物。
{"title":"Inconsistent relationships detected between seed size, shape, and persistence for different plant functional groups in the Pannonian flora.","authors":"Viktória Törő-Szijgyártó, Péter Török, Katalin Tóth, Hajnalka Málik-Roffa, Luis Roberto Guallichico Suntaxi, Szilvia Madar, Gergely Kovacsics-Vári, Andrea McIntosh-Buday, Patricia Díaz Cando, Judit Sonkoly","doi":"10.1093/aob/mcaf322","DOIUrl":"https://doi.org/10.1093/aob/mcaf322","url":null,"abstract":"<p><strong>Background and aims: </strong>Knowledge on seed persistence is vital from both theoretical and practical considerations but directly collecting persistence data for many species is unfeasible. Therefore, there is a need to identify traits associated with seed persistence, but studies about the effects of seed size and shape on persistence yielded results varying across regions. We studied 392 species of the Pannonian flora (Central Europe) to asses (i) how seed mass and shape are related to seed persistence, (ii) whether this relationship is consistent across plant functional groups, and (iii) whether seed mass and shape are correlated in different functional groups?</p><p><strong>Methods: </strong>We collected data on the seed mass and persistence of species and performed measurements to calculate their Seed Shape Index, with higher values indicating greater deviation from sphericity. To account for phylogenetic non-independence, we analysed how seed mass and Seed Shape Index affect persistence in all herbaceous species and separately in four plant functional groups using phylogenetic logistic regressions. To test how seed mass and shape are related to each other in these groups, we applied PGLS regression.</p><p><strong>Key results: </strong>Across all species, both seed mass and Seed Shape Index were negatively related to persistence, with seed mass having a stronger association. The same relationship was observed in forbs and short-lived species, but only seed shape was related to persistence in graminoid species. The relationship between seed mass and seed shape also varied between functional groups.</p><p><strong>Conclusions: </strong>Consistent with many studies in other floras, both seed mass and shape were negatively related to persistence in the Pannonian flora after accounting for phylogeny. However, only seed shape was associated with persistence in graminoid species, suggesting that different factors may be at play in forbs and graminoids. Therefore, future studies of this relationship may need to treat and analyse graminoids separately.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145740709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Geographic distance and landscape ruggedness shape genome-wide divergence and admixture in Leucostele cacti across the Atacama-central Chile biodiversity hotspot. 地理距离和景观崎岖度决定了阿塔卡马-智利中部生物多样性热点地区浅孔仙人掌的全基因组分化和混合。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-12 DOI: 10.1093/aob/mcaf323
José Angel García-Beltrán, Sandy Toledo, María Paz Melo-Gaymer, Marcelo R Rosas, Anita Cisternas-Fuentes, Pablo C Guerrero

Background and objectives: The hyperarid-semiarid gradient of the western Andes, from the coastal Atacama Desert to central Mediterranean Chile, hosts exceptional plant endemism driven by paleoclimatic oscillations, rugged topography, and long-term isolation. Here, we use the columnar cactus genus Leucostele as a model to (1) quantify the influence of geographic isolation and topographic heterogeneity on genome-wide divergence, and (2) test whether zones of secondary contact foster genetic admixture.

Methods: We genotyped 151 individuals from 20 populations of Leucostele using 9,397 SNPs to assess spatial genetic structure, isolation by distance, and the influence of terrain ruggedness and geographic isolation on admixture.

Key results: Spatial ancestry analyses delineated ten latitudinal genetic clusters, with eight populations exhibiting > 75 % ancestry assignment to a single cluster and twelve showing varying degrees of admixture. Genetic differentiation increased with geographic distance, revealing strong isolation by distance across Atacama Desert to southern central Chile. Admixture, quantified as Shannon entropy, varied among populations and decreased significantly with both increasing terrain ruggedness and greater geographic isolation.

Conclusions: Our study reveals that rugged topography and spatial isolation promote genomic divergence by limiting gene flow and fostering distinct genetic clusters while less rugged terrain facilitates secondary contact and admixture, showing that these barriers remain permeable and reproductive isolation is incomplete. This dual influence of topographic heterogeneity underpins the dynamic evolutionary mosaic observed across the coastal Atacama Desert-central Chile gradient.

背景和目的:西安第斯山脉的超干旱-半干旱梯度,从沿海的阿塔卡马沙漠到智利地中海中部,在古气候振荡、崎岖地形和长期隔离的驱动下,拥有独特的植物特有。本文以柱状仙人掌属Leucostele为研究对象(1)量化地理隔离和地形异质性对全基因组差异的影响;(2)检验次生接触区是否促进了遗传混合。方法:利用9397个单核苷酸多态性(SNPs)对20个Leucostele居群的151个个体进行基因分型,分析空间遗传结构、距离隔离、地形崎岖度和地理隔离对混合的影响。主要结果:空间祖先分析描绘了10个纬度遗传集群,其中8个种群表现出bb0 - 75%的祖先分配到一个集群,12个表现出不同程度的混合。遗传分化随着地理距离的增加而增加,表明从阿塔卡马沙漠到智利中南部的距离有很强的隔离性。以香农熵为量化指标的混合度在不同种群之间存在差异,并且随着地形崎岖度的增加和地理隔离程度的提高而显著降低。结论:崎岖地形和空间隔离通过限制基因流动和形成不同的遗传集群来促进基因组分化,而崎岖地形有利于二次接触和混合,表明这些障碍仍然具有渗透性,生殖隔离是不完整的。这种地形异质性的双重影响支撑了在沿海阿塔卡马沙漠-智利中部梯度观察到的动态进化马赛克。
{"title":"Geographic distance and landscape ruggedness shape genome-wide divergence and admixture in Leucostele cacti across the Atacama-central Chile biodiversity hotspot.","authors":"José Angel García-Beltrán, Sandy Toledo, María Paz Melo-Gaymer, Marcelo R Rosas, Anita Cisternas-Fuentes, Pablo C Guerrero","doi":"10.1093/aob/mcaf323","DOIUrl":"https://doi.org/10.1093/aob/mcaf323","url":null,"abstract":"<p><strong>Background and objectives: </strong>The hyperarid-semiarid gradient of the western Andes, from the coastal Atacama Desert to central Mediterranean Chile, hosts exceptional plant endemism driven by paleoclimatic oscillations, rugged topography, and long-term isolation. Here, we use the columnar cactus genus Leucostele as a model to (1) quantify the influence of geographic isolation and topographic heterogeneity on genome-wide divergence, and (2) test whether zones of secondary contact foster genetic admixture.</p><p><strong>Methods: </strong>We genotyped 151 individuals from 20 populations of Leucostele using 9,397 SNPs to assess spatial genetic structure, isolation by distance, and the influence of terrain ruggedness and geographic isolation on admixture.</p><p><strong>Key results: </strong>Spatial ancestry analyses delineated ten latitudinal genetic clusters, with eight populations exhibiting > 75 % ancestry assignment to a single cluster and twelve showing varying degrees of admixture. Genetic differentiation increased with geographic distance, revealing strong isolation by distance across Atacama Desert to southern central Chile. Admixture, quantified as Shannon entropy, varied among populations and decreased significantly with both increasing terrain ruggedness and greater geographic isolation.</p><p><strong>Conclusions: </strong>Our study reveals that rugged topography and spatial isolation promote genomic divergence by limiting gene flow and fostering distinct genetic clusters while less rugged terrain facilitates secondary contact and admixture, showing that these barriers remain permeable and reproductive isolation is incomplete. This dual influence of topographic heterogeneity underpins the dynamic evolutionary mosaic observed across the coastal Atacama Desert-central Chile gradient.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145740676","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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