Iciar Jiménez-Martín, Andy J Green, Nándor Szabó, Balázs András Lukács, Orsolya Vincze, Ádám Lovas-Kiss
Background and aims: Many plant species undergo long-distance dispersal through migratory waterbirds. However, there is little information about the effectiveness of this dispersal, especially regarding the chances of plant establishment and the impact of gut passage or the faecal matrix on plant germination, growth and reproductive investment in seeds.
Methods: In a greenhouse experiment, we addressed these questions using an annual mudflat species, Juncus bufonius (Juncaceae), and a perennial emergent aquatic species, Eleocharis palustris (Cyperaceae), whose seeds are dispersed by many waterbird species in Europe. We planted seeds directly in soil or within mallard faeces placed on soil, using both control seeds and seeds that survived gut passage through mallards. Over the following 11 weeks, we quantified germination and plant performance.
Key results: Gut passage reduced germination time of J. bufonius when there was no faecal matrix, and it increased asymptotic height of E. palustris. Presence of the faecal matrix hindered germinability, plant growth and final biomass for both species, along with total seed production for J. bufonius. Presence of the faecal matrix slowed down germination in E. palustris, but had the opposite effect for J. bufonius. It was also associated with greater relative investment in seeds in J. bufonius (more seeds per unit biomass), probably as a consequence of later germination. In both species, earlier germination increased final biomass (and seed production in J. bufonius).
Conclusions: Our results support the importance of waterbird endozoochory in plant dispersal but suggest that it might be more effective when faeces disintegrate, such as when egested into water or disaggregated on land (e.g. by insects). Previous studies with other plants have recorded accelerated germination following waterbird gut passage, and our results show that this can benefit plant fitness.
{"title":"Better out than in: faecal matrix inhibits establishment success after waterfowl endozoochory.","authors":"Iciar Jiménez-Martín, Andy J Green, Nándor Szabó, Balázs András Lukács, Orsolya Vincze, Ádám Lovas-Kiss","doi":"10.1093/aob/mcaf192","DOIUrl":"10.1093/aob/mcaf192","url":null,"abstract":"<p><strong>Background and aims: </strong>Many plant species undergo long-distance dispersal through migratory waterbirds. However, there is little information about the effectiveness of this dispersal, especially regarding the chances of plant establishment and the impact of gut passage or the faecal matrix on plant germination, growth and reproductive investment in seeds.</p><p><strong>Methods: </strong>In a greenhouse experiment, we addressed these questions using an annual mudflat species, Juncus bufonius (Juncaceae), and a perennial emergent aquatic species, Eleocharis palustris (Cyperaceae), whose seeds are dispersed by many waterbird species in Europe. We planted seeds directly in soil or within mallard faeces placed on soil, using both control seeds and seeds that survived gut passage through mallards. Over the following 11 weeks, we quantified germination and plant performance.</p><p><strong>Key results: </strong>Gut passage reduced germination time of J. bufonius when there was no faecal matrix, and it increased asymptotic height of E. palustris. Presence of the faecal matrix hindered germinability, plant growth and final biomass for both species, along with total seed production for J. bufonius. Presence of the faecal matrix slowed down germination in E. palustris, but had the opposite effect for J. bufonius. It was also associated with greater relative investment in seeds in J. bufonius (more seeds per unit biomass), probably as a consequence of later germination. In both species, earlier germination increased final biomass (and seed production in J. bufonius).</p><p><strong>Conclusions: </strong>Our results support the importance of waterbird endozoochory in plant dispersal but suggest that it might be more effective when faeces disintegrate, such as when egested into water or disaggregated on land (e.g. by insects). Previous studies with other plants have recorded accelerated germination following waterbird gut passage, and our results show that this can benefit plant fitness.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":"1601-1611"},"PeriodicalIF":3.6,"publicationDate":"2025-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144881921","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background and aims: Ecological niche differentiation is well associated with intraspecific divergence of functional traits, which may lead to the evolution of premating reproductive isolation. However, the link between the ecological niches, trait divergence and premating isolation remains poorly understood. This is particularly pertinent in hyperdiverse areas, such as the Cape Floristic Region of South Africa, where fine-scale ecological heterogeneity has been hypothesized as a major driver of speciation. Using the polymorphic geophyte Gladiolus carneus, endemic to the Cape Floristic Region, we test whether ecological niche differentiation mediates premating reproductive isolation.
Methods: We first tested whether putative ecotypes of G. carneus were distinct based on their floral and vegetative morphology. Next, we documented the abiotic niche, flowering phenology and pollination niche of each putative ecotype and tested whether any resulting niche differentiation causes premating reproductive isolation.
Key results: Seven distinct ecotypes were identified. Using niche modelling and multivariate analyses, we found that these ecotypes occupied distinct abiotic niches, resulting in strong ecogeographic isolation. They also had distinct flowering times, causing varying strengths of phenological isolation. For the pollinator niche, we found that all sampled populations were pollinated by one of three highly effective functional pollinators; however, at the ecotypic level there were no consistent trends, leading to varying strengths in pollinator-mediated isolation. Across all ecotypes, ecogeographic isolation was the strongest barrier to gene flow, which, combined with phenological and pollinator-mediated isolation, caused near complete premating reproductive isolation.
Conclusions: These results suggest that ecological niche differentiation between G. carneus ecotypes might be contributing to incipient speciation within the species complex and further suggest that ecological niche differentiation may be a major driver of speciation in the hyperdiverse Cape Floristic Region.
{"title":"Ecological niche differentiation mediates near complete premating reproductive isolation within the Gladiolus carneus (Iridaceae) species complex.","authors":"Katharine L Khoury, Shelley Edwards, Ethan Newman","doi":"10.1093/aob/mcaf172","DOIUrl":"10.1093/aob/mcaf172","url":null,"abstract":"<p><strong>Background and aims: </strong>Ecological niche differentiation is well associated with intraspecific divergence of functional traits, which may lead to the evolution of premating reproductive isolation. However, the link between the ecological niches, trait divergence and premating isolation remains poorly understood. This is particularly pertinent in hyperdiverse areas, such as the Cape Floristic Region of South Africa, where fine-scale ecological heterogeneity has been hypothesized as a major driver of speciation. Using the polymorphic geophyte Gladiolus carneus, endemic to the Cape Floristic Region, we test whether ecological niche differentiation mediates premating reproductive isolation.</p><p><strong>Methods: </strong>We first tested whether putative ecotypes of G. carneus were distinct based on their floral and vegetative morphology. Next, we documented the abiotic niche, flowering phenology and pollination niche of each putative ecotype and tested whether any resulting niche differentiation causes premating reproductive isolation.</p><p><strong>Key results: </strong>Seven distinct ecotypes were identified. Using niche modelling and multivariate analyses, we found that these ecotypes occupied distinct abiotic niches, resulting in strong ecogeographic isolation. They also had distinct flowering times, causing varying strengths of phenological isolation. For the pollinator niche, we found that all sampled populations were pollinated by one of three highly effective functional pollinators; however, at the ecotypic level there were no consistent trends, leading to varying strengths in pollinator-mediated isolation. Across all ecotypes, ecogeographic isolation was the strongest barrier to gene flow, which, combined with phenological and pollinator-mediated isolation, caused near complete premating reproductive isolation.</p><p><strong>Conclusions: </strong>These results suggest that ecological niche differentiation between G. carneus ecotypes might be contributing to incipient speciation within the species complex and further suggest that ecological niche differentiation may be a major driver of speciation in the hyperdiverse Cape Floristic Region.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":"1465-1483"},"PeriodicalIF":3.6,"publicationDate":"2025-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144697452","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background and aims: Leaf abscission is the process whereby plants actively shed leaves through physical detachment at the abscission zone (AZ). Leaf abscission is generally preceded by senescence, during which there is an active reclamation of leaf nutrients. The physiological regulation of leaf abscission remains poorly studied in trees, with a suite of environmental and endogenous signals believed to regulate the process. Here, we sought to characterize the role of water status, leaf gas exchange, senescence, and the phytohormone abscisic acid (ABA) in regulating leaf abscission in temperate trees.
Methods: We developed a novel method to quantify AZ competency (AZC) and simultaneously measured leaf gas exchange, chlorophyll content, water potential, AZC, and ABA levels from late summer until leaf death in four temperate tree species representing deciduous, brevi-deciduous, and marcescent leaf habits. We tested for associations between changes in key physiological traits and AZC in all species.
Key results: The two deciduous species showed contrasting physiological patterns leading to leaf abscission: one species degraded chlorophyll and ceased photosynthesis before complete AZC, while the other retained chlorophyll and continued photosynthesis until complete AZC. The brevi-deciduous species degraded most chlorophyll but developed AZC gradually over a longer period. The marcescent species' leaves fully senesced but did not develop AZC.
Conclusions: These findings demonstrate that leaf senescence and abscission are distinct and variably timed processes across temperate tree species. These results have implications for predicting future leaf lifespan as the climate changes, with the characterization of physiological diversity in the regulation of leaf abscission profoundly understudied.
{"title":"Making a clean break: contrasting leaf abscission dynamics across temperate leaf habits.","authors":"Cade N Kane, Ian M Rimer, Scott A M McAdam","doi":"10.1093/aob/mcaf327","DOIUrl":"https://doi.org/10.1093/aob/mcaf327","url":null,"abstract":"<p><strong>Background and aims: </strong>Leaf abscission is the process whereby plants actively shed leaves through physical detachment at the abscission zone (AZ). Leaf abscission is generally preceded by senescence, during which there is an active reclamation of leaf nutrients. The physiological regulation of leaf abscission remains poorly studied in trees, with a suite of environmental and endogenous signals believed to regulate the process. Here, we sought to characterize the role of water status, leaf gas exchange, senescence, and the phytohormone abscisic acid (ABA) in regulating leaf abscission in temperate trees.</p><p><strong>Methods: </strong>We developed a novel method to quantify AZ competency (AZC) and simultaneously measured leaf gas exchange, chlorophyll content, water potential, AZC, and ABA levels from late summer until leaf death in four temperate tree species representing deciduous, brevi-deciduous, and marcescent leaf habits. We tested for associations between changes in key physiological traits and AZC in all species.</p><p><strong>Key results: </strong>The two deciduous species showed contrasting physiological patterns leading to leaf abscission: one species degraded chlorophyll and ceased photosynthesis before complete AZC, while the other retained chlorophyll and continued photosynthesis until complete AZC. The brevi-deciduous species degraded most chlorophyll but developed AZC gradually over a longer period. The marcescent species' leaves fully senesced but did not develop AZC.</p><p><strong>Conclusions: </strong>These findings demonstrate that leaf senescence and abscission are distinct and variably timed processes across temperate tree species. These results have implications for predicting future leaf lifespan as the climate changes, with the characterization of physiological diversity in the regulation of leaf abscission profoundly understudied.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145773302","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pedro Henrique Pezzi, Leonardo Tresoldi Gonçalves, Alice Backes, Giovanna Câmara Giudicelli, Caroline Turchetto, Aureliano Bombarely, Loreta Brandão de Freitas
Background and aims: Petunia provides a valuable opportunity to study speciation in a biodiversity hotspot, focusing on species with varied floral syndromes. Here, we examined a population displaying a range of flower colors, from light to dark purple, to determine its origin and explore the diversification patterns of Petunia.
Methods: We employed Genotyping-by-Sequencing on multiple individuals from different species to assess population structure and hybridization patterns, thereby revealing insights into the evolutionary history of unusual Petunia populations through various demographic models.
Key results: Population structure analyses revealed a distinct genetic component unique to the atypical individuals, with no evidence supporting interspecific hybrid origins. Demographic models and species delimitation methods produced conflicting results, likely due to the rapid diversification within the genus Petunia.
Conclusions: Our findings indicate that tracing the evolutionary origins of Petunia species in a biodiversity hotspot is challenging; however, it offers a valuable opportunity to study speciation in the Neotropics and flower color evolution at both the species and population levels.
{"title":"Genomic insights into the rapid diversification of Petunia in a biodiversity hotspot in the South American grasslands.","authors":"Pedro Henrique Pezzi, Leonardo Tresoldi Gonçalves, Alice Backes, Giovanna Câmara Giudicelli, Caroline Turchetto, Aureliano Bombarely, Loreta Brandão de Freitas","doi":"10.1093/aob/mcaf329","DOIUrl":"https://doi.org/10.1093/aob/mcaf329","url":null,"abstract":"<p><strong>Background and aims: </strong>Petunia provides a valuable opportunity to study speciation in a biodiversity hotspot, focusing on species with varied floral syndromes. Here, we examined a population displaying a range of flower colors, from light to dark purple, to determine its origin and explore the diversification patterns of Petunia.</p><p><strong>Methods: </strong>We employed Genotyping-by-Sequencing on multiple individuals from different species to assess population structure and hybridization patterns, thereby revealing insights into the evolutionary history of unusual Petunia populations through various demographic models.</p><p><strong>Key results: </strong>Population structure analyses revealed a distinct genetic component unique to the atypical individuals, with no evidence supporting interspecific hybrid origins. Demographic models and species delimitation methods produced conflicting results, likely due to the rapid diversification within the genus Petunia.</p><p><strong>Conclusions: </strong>Our findings indicate that tracing the evolutionary origins of Petunia species in a biodiversity hotspot is challenging; however, it offers a valuable opportunity to study speciation in the Neotropics and flower color evolution at both the species and population levels.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145767033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background and aims: The temperate montane coniferous forests in Northeast Asia are among the ecosystems most sensitive to ongoing global warming. However, the timing, patterns, and environmental controls of wood formation in dominant tree species remain poorly understood.
Methods: In this study, we investigated the intra-annual wood formation of Larix olgensis A. Herry along a 750-1450 m elevational gradient in Changbai Mountain, Northeast China, using weekly microcoring and high-resolution climatic data. Environmental drivers of growth onset, peak, and cessation were identified using multiple linear regression models, and the relative contributions of climatic variables to seasonal radial growth were quantified using linear mixed-effects models.
Key results: We found that for every 100 m increase in elevation, the onset of wood formation was delayed by approximately 3.3 days, and the growing season was shortened by around 3.5 days. Growth onset was primarily predicted by photoperiod and growing degree days (GDD), while peak growth was jointly influenced by photoperiod and precipitation. Growth cessation was strongly predicted by photoperiod, with additional contributions from cold degree days (CDD) and seasonal precipitation. Weekly radial growth was best explained by photoperiod and temperature, with vapor pressure deficit showing a weak but significant positive effect, and soil water content exhibiting negative relationship with growth.
Conclusions: These findings demonstrate that photoperiod consistently regulates both the timing and seasonal patterns of wood formation in L. olgensis, while GDD and CDD played distinct and significant roles in predicting the onset and cessation of secondary growth in spring and autumn, respectively. This study provides valuable insight into the phase-specific climatic controls on wood formation and offers a basis for predicting the response of temperate coniferous forests to future climate change.
背景与目的:东北亚温带山地针叶林是对全球变暖最敏感的生态系统之一。然而,优势树种木材形成的时间、模式和环境控制仍然知之甚少。方法:利用周微芯法和高分辨率气候资料,对长白山750 ~ 1450 m海拔梯度的长白山落叶松(Larix olgensis a. Herry)年际木材形成过程进行了研究。利用多元线性回归模型确定了生长开始、高峰和停止的环境驱动因素,并利用线性混合效应模型量化了气候变量对季节性径向生长的相对贡献。研究发现,海拔每升高100 m,木材形成的开始时间就会推迟约3.3天,生长季节缩短约3.5天。光周期和生长度数(GDD)是预测生长开始的主要因子,而生长高峰受光周期和降水的共同影响。光周期对生长停止有很强的预测作用,冷度日数(CDD)和季节性降水也有额外的贡献。光周期和温度最能解释周径向生长,水汽压亏缺对周径向生长有微弱但显著的正向影响,土壤含水量与周径向生长呈负相关。结论:上述结果表明,光周期对长叶松木材形成的时间和季节模式具有一致的调控作用,而GDD和CDD分别对春季和秋季次生生长的开始和停止具有显著的预测作用。该研究为揭示气候对木材形成的阶段性控制提供了有价值的见解,并为预测温带针叶林对未来气候变化的响应提供了依据。
{"title":"Timing, patterns, and environmental drivers of wood formation in Larix olgensis in Changbai Mountain, Northeast China.","authors":"Nipeng Qian, Chunchao Dong, Kuan Shi, Qijing Liu, Guang Zhou","doi":"10.1093/aob/mcaf326","DOIUrl":"https://doi.org/10.1093/aob/mcaf326","url":null,"abstract":"<p><strong>Background and aims: </strong>The temperate montane coniferous forests in Northeast Asia are among the ecosystems most sensitive to ongoing global warming. However, the timing, patterns, and environmental controls of wood formation in dominant tree species remain poorly understood.</p><p><strong>Methods: </strong>In this study, we investigated the intra-annual wood formation of Larix olgensis A. Herry along a 750-1450 m elevational gradient in Changbai Mountain, Northeast China, using weekly microcoring and high-resolution climatic data. Environmental drivers of growth onset, peak, and cessation were identified using multiple linear regression models, and the relative contributions of climatic variables to seasonal radial growth were quantified using linear mixed-effects models.</p><p><strong>Key results: </strong>We found that for every 100 m increase in elevation, the onset of wood formation was delayed by approximately 3.3 days, and the growing season was shortened by around 3.5 days. Growth onset was primarily predicted by photoperiod and growing degree days (GDD), while peak growth was jointly influenced by photoperiod and precipitation. Growth cessation was strongly predicted by photoperiod, with additional contributions from cold degree days (CDD) and seasonal precipitation. Weekly radial growth was best explained by photoperiod and temperature, with vapor pressure deficit showing a weak but significant positive effect, and soil water content exhibiting negative relationship with growth.</p><p><strong>Conclusions: </strong>These findings demonstrate that photoperiod consistently regulates both the timing and seasonal patterns of wood formation in L. olgensis, while GDD and CDD played distinct and significant roles in predicting the onset and cessation of secondary growth in spring and autumn, respectively. This study provides valuable insight into the phase-specific climatic controls on wood formation and offers a basis for predicting the response of temperate coniferous forests to future climate change.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145767040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xiumei Nie, Jinjin Liang, Daniel A Bastías, Xingxu Zhang, Zhibiao Nan
Background and aims: Soils are reservoirs of key nutrients and enzymes for plant fitness and ecosystem productivity. Epichloë fungal endophytes are well-known to shape plant performance, yet the mechanistic link between Epichloë-mediated changes on plant root genes and root exudates with soil biochemistry is not entirely clear. We studied the effect of the foliar endophyte of grasses Epichloë gansuensis (C.J. Li & Nan) on the soil biochemistry and composition/abundance of host root genes and exudates. We hypothesized that Epichloë would affect soil biochemistry, and that these changes would be associated with endophyte-mediated alterations in root genes and exudates.
Methods: Soil samples, root tissues, and root exudates were harvested from field plots of Achnatherum inebrians (Hance) Keng plants with and without E. gansuensis endophytes. We measured concentrations/activities of nutrients/enzymes in bulk and rhizosphere soils, together with the composition and expression of root genes and exudates that were determined via high resolution LC-MS and RNA-Seq.
Key results: Epichloë altered concentrations/activities of several nutrients/enzymes in both soil compartments (e.g., organic carbon, β-glucosidase), with larger effects in the rhizosphere soil than bulk soil. Epichloë also modified the expression of root genes (e.g., AHCY) and exudates (e.g., malate, ethylene), with several of the changes in root exudates aligned with the altered expression of root genes (e.g., high malate abundance was associated with enhanced expression of their biosynthesis genes). Many of the Epichloë-derived changes in soil nutrients and enzymes levels were functionally associated with the host plant release of bioactive root exudates affected by the endophyte.
Conclusions: Foliar Epichloë endophytes can shape soil biochemistry, root gene expression, and root exudate abundance, and the existence of functional links between soil biochemistry and root exudates in plant-endophyte associations.
背景与目的:土壤是植物适应性和生态系统生产力的关键养分和酶的储存库。Epichloë真菌内生菌是众所周知的塑造植物性能,但Epichloë-mediated植物根基因和根分泌物变化与土壤生物化学之间的机制联系尚不完全清楚。研究了Epichloë gansuensis (C.J. Li & Nan)叶片内生菌对土壤生化、寄主根基因组成/丰度及分泌物的影响。我们假设Epichloë会影响土壤生物化学,并且这些变化可能与内生菌介导的根基因和渗出物的改变有关。方法:采集带和不带内生菌的酒牛膝草(Achnatherum inebrians (Hance) Keng)植株的土壤样品、根组织和根分泌物。我们测量了散装土壤和根际土壤中营养物质/酶的浓度/活性,并通过高分辨率LC-MS和RNA-Seq测定了根基因和渗出物的组成和表达。关键结果:Epichloë改变了两个土壤区室中几种营养物质/酶的浓度/活性(例如,有机碳,β-葡萄糖苷酶),在根际土壤中的影响大于块状土壤。Epichloë也改变了根基因(如AHCY)和渗出物(如苹果酸盐、乙烯)的表达,根渗出物中的一些变化与根基因表达的改变一致(例如,苹果酸盐丰度高与其生物合成基因的表达增强有关)。许多Epichloë-derived土壤养分和酶水平的变化在功能上与受内生菌影响的寄主植物释放生物活性根分泌物有关。结论:叶面Epichloë内生菌可以影响土壤生化、根基因表达和根分泌物丰度,在植物-内生菌关系中,土壤生化和根分泌物之间存在功能联系。
{"title":"Foliar Epichloë fungal endophytes affected the soil biochemistry via changes in the expression of root genes and exudates within their host plants.","authors":"Xiumei Nie, Jinjin Liang, Daniel A Bastías, Xingxu Zhang, Zhibiao Nan","doi":"10.1093/aob/mcaf330","DOIUrl":"https://doi.org/10.1093/aob/mcaf330","url":null,"abstract":"<p><strong>Background and aims: </strong>Soils are reservoirs of key nutrients and enzymes for plant fitness and ecosystem productivity. Epichloë fungal endophytes are well-known to shape plant performance, yet the mechanistic link between Epichloë-mediated changes on plant root genes and root exudates with soil biochemistry is not entirely clear. We studied the effect of the foliar endophyte of grasses Epichloë gansuensis (C.J. Li & Nan) on the soil biochemistry and composition/abundance of host root genes and exudates. We hypothesized that Epichloë would affect soil biochemistry, and that these changes would be associated with endophyte-mediated alterations in root genes and exudates.</p><p><strong>Methods: </strong>Soil samples, root tissues, and root exudates were harvested from field plots of Achnatherum inebrians (Hance) Keng plants with and without E. gansuensis endophytes. We measured concentrations/activities of nutrients/enzymes in bulk and rhizosphere soils, together with the composition and expression of root genes and exudates that were determined via high resolution LC-MS and RNA-Seq.</p><p><strong>Key results: </strong>Epichloë altered concentrations/activities of several nutrients/enzymes in both soil compartments (e.g., organic carbon, β-glucosidase), with larger effects in the rhizosphere soil than bulk soil. Epichloë also modified the expression of root genes (e.g., AHCY) and exudates (e.g., malate, ethylene), with several of the changes in root exudates aligned with the altered expression of root genes (e.g., high malate abundance was associated with enhanced expression of their biosynthesis genes). Many of the Epichloë-derived changes in soil nutrients and enzymes levels were functionally associated with the host plant release of bioactive root exudates affected by the endophyte.</p><p><strong>Conclusions: </strong>Foliar Epichloë endophytes can shape soil biochemistry, root gene expression, and root exudate abundance, and the existence of functional links between soil biochemistry and root exudates in plant-endophyte associations.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145767046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anri Chomentowska, Sophie G Dauerman, Nora Heaphy, Leonardo Gaspar, Pablo M Molina, C Matt Guilliams, R Matthew Ogburn, Lillian P Hancock, Joseph A M Holtum, Andrés Moreira-Muñoz, Mónica Arakaki, Patrick W Sweeney, Iris E Peralta, Erika J Edwards
Background and aims: Desert and alpine environments, though ecologically distinct, often share similar environmental stressors such as drought and high radiation. Various plant lineages traverse both biomes, which is often associated with transitions in life history strategy, where annuality is more often associated with drier desert habitats and perenniality more common in higher elevations. One such lineage is Cistantheae (Montiaceae), a morphologically diverse herbaceous clade in western North and South America. We aimed to infer a robust phylogeny of the clade as a foundation for taxonomic and comparative work.
Methods: We used double-digest RADSeq to generate reduced-representation genomic data from over 160 samples representing 48 putative species in Cistantheae. Maximum likelihood and coalescent-based phylogenetic methods were utilized to infer evolutionary relationships across the full clade and within major subclades. We tested for signatures of admixture and introgressive gene flow, and reconstructed ancestral life history and climate niche to identify patterns of correlated evolution.
Key results: We inferred a well-resolved phylogeny of Cistantheae, providing strong support for relationships among subclades within Cistantheae. While many species relationships were clarified, we also found evidence of rampant gene flow and incomplete lineage sorting, particularly within the annual Cistanthe clade from the Atacama Desert. Life history is evolutionarily labile across the clade and was strongly correlated with temperature and precipitation-related bioclimatic variables: annuals tend to occur in hotter, drier environments, while perennials in cooler and wetter habitats. Elevational range was also evolutionarily labile, with several species occupying broad elevational gradients.
Conclusions: We present the first densely sampled phylogenomic analysis of Cistantheae, providing key insights into species relationships in the clade. Repeated transitions in life history and climate niche, alongside wide elevational ranges, suggest that many Cistantheae species may be preadapted to both arid and montane habitats. This phylogeny will underpin further comparative, taxonomic, and phylogenomic studies in this ecologically important lineage.
{"title":"Phylogenomic analyses of the diverse desert-alpine plant lineage Cistantheae.","authors":"Anri Chomentowska, Sophie G Dauerman, Nora Heaphy, Leonardo Gaspar, Pablo M Molina, C Matt Guilliams, R Matthew Ogburn, Lillian P Hancock, Joseph A M Holtum, Andrés Moreira-Muñoz, Mónica Arakaki, Patrick W Sweeney, Iris E Peralta, Erika J Edwards","doi":"10.1093/aob/mcaf319","DOIUrl":"https://doi.org/10.1093/aob/mcaf319","url":null,"abstract":"<p><strong>Background and aims: </strong>Desert and alpine environments, though ecologically distinct, often share similar environmental stressors such as drought and high radiation. Various plant lineages traverse both biomes, which is often associated with transitions in life history strategy, where annuality is more often associated with drier desert habitats and perenniality more common in higher elevations. One such lineage is Cistantheae (Montiaceae), a morphologically diverse herbaceous clade in western North and South America. We aimed to infer a robust phylogeny of the clade as a foundation for taxonomic and comparative work.</p><p><strong>Methods: </strong>We used double-digest RADSeq to generate reduced-representation genomic data from over 160 samples representing 48 putative species in Cistantheae. Maximum likelihood and coalescent-based phylogenetic methods were utilized to infer evolutionary relationships across the full clade and within major subclades. We tested for signatures of admixture and introgressive gene flow, and reconstructed ancestral life history and climate niche to identify patterns of correlated evolution.</p><p><strong>Key results: </strong>We inferred a well-resolved phylogeny of Cistantheae, providing strong support for relationships among subclades within Cistantheae. While many species relationships were clarified, we also found evidence of rampant gene flow and incomplete lineage sorting, particularly within the annual Cistanthe clade from the Atacama Desert. Life history is evolutionarily labile across the clade and was strongly correlated with temperature and precipitation-related bioclimatic variables: annuals tend to occur in hotter, drier environments, while perennials in cooler and wetter habitats. Elevational range was also evolutionarily labile, with several species occupying broad elevational gradients.</p><p><strong>Conclusions: </strong>We present the first densely sampled phylogenomic analysis of Cistantheae, providing key insights into species relationships in the clade. Repeated transitions in life history and climate niche, alongside wide elevational ranges, suggest that many Cistantheae species may be preadapted to both arid and montane habitats. This phylogeny will underpin further comparative, taxonomic, and phylogenomic studies in this ecologically important lineage.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145761927","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marco Antonio Chiminazzo, Alessandra Fidelis, Felipe Alvarez, Tristan Charles-Dominique
Background and aims: Growth patterns in tropical savanna woody plants remain poorly understood across their vast diversity of strategies and plant forms. Something still little known is whether tropical woody species exhibit rhythmic or seasonal growth. This study investigates growth rhythmicity in Cerrado woody species, focusing on their post-fire resprouting patterns and their relationship with rainfall seasonality and fire.
Methods: We analyzed the number and characteristics of growth units produced after fire events (2020 and 2021 wildfires) in 21 Cerrado species. Satellite imagery and morphological markers along stems - such as internode length and bud scars - were used to assess growth cycles.
Key results: Cerrado species exhibited clear annual growth, typically producing one growth unit per year, closely aligned with the rainy season. Morphological traits reliably marked these cycles. Primary growth was consistently greater in the first growth unit produced after fire, likely due to increased carbohydrate allocation and reduced apical dominance of previous existing stems. This enhanced growth may help position foliage above future flame zones, improving survival. As species exhibited an annual growth pattern, we observed synchrony between the number of growth units and the number of years since the last fire.
Conclusions: Woody plants in the Cerrado grow through annual growth units formed from buds with preformed structures that elongate during the rainy season. The extent of this growth varies among species and individual life histories. Fire, a frequent disturbance, stimulates the production of larger growth units. This response indicates that woody plants can rapidly rebuild aboveground biomass after burning, likely supported by stored carbohydrates and the release of apical dominance. These patterns highlight the resilience of Cerrado vegetation. To deepen our understanding of tropical plant development, future work should relate growth units to species phenology, rainfall variability, and vegetation types.
{"title":"Time since the last fire and climate seasonality reveal rhythmic and annual growth rates of Cerrado's woody plants.","authors":"Marco Antonio Chiminazzo, Alessandra Fidelis, Felipe Alvarez, Tristan Charles-Dominique","doi":"10.1093/aob/mcaf324","DOIUrl":"https://doi.org/10.1093/aob/mcaf324","url":null,"abstract":"<p><strong>Background and aims: </strong>Growth patterns in tropical savanna woody plants remain poorly understood across their vast diversity of strategies and plant forms. Something still little known is whether tropical woody species exhibit rhythmic or seasonal growth. This study investigates growth rhythmicity in Cerrado woody species, focusing on their post-fire resprouting patterns and their relationship with rainfall seasonality and fire.</p><p><strong>Methods: </strong>We analyzed the number and characteristics of growth units produced after fire events (2020 and 2021 wildfires) in 21 Cerrado species. Satellite imagery and morphological markers along stems - such as internode length and bud scars - were used to assess growth cycles.</p><p><strong>Key results: </strong>Cerrado species exhibited clear annual growth, typically producing one growth unit per year, closely aligned with the rainy season. Morphological traits reliably marked these cycles. Primary growth was consistently greater in the first growth unit produced after fire, likely due to increased carbohydrate allocation and reduced apical dominance of previous existing stems. This enhanced growth may help position foliage above future flame zones, improving survival. As species exhibited an annual growth pattern, we observed synchrony between the number of growth units and the number of years since the last fire.</p><p><strong>Conclusions: </strong>Woody plants in the Cerrado grow through annual growth units formed from buds with preformed structures that elongate during the rainy season. The extent of this growth varies among species and individual life histories. Fire, a frequent disturbance, stimulates the production of larger growth units. This response indicates that woody plants can rapidly rebuild aboveground biomass after burning, likely supported by stored carbohydrates and the release of apical dominance. These patterns highlight the resilience of Cerrado vegetation. To deepen our understanding of tropical plant development, future work should relate growth units to species phenology, rainfall variability, and vegetation types.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145761993","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Viktória Törő-Szijgyártó, Péter Török, Katalin Tóth, Hajnalka Málik-Roffa, Luis Roberto Guallichico Suntaxi, Szilvia Madar, Gergely Kovacsics-Vári, Andrea McIntosh-Buday, Patricia Díaz Cando, Judit Sonkoly
Background and aims: Knowledge on seed persistence is vital from both theoretical and practical considerations but directly collecting persistence data for many species is unfeasible. Therefore, there is a need to identify traits associated with seed persistence, but studies about the effects of seed size and shape on persistence yielded results varying across regions. We studied 392 species of the Pannonian flora (Central Europe) to asses (i) how seed mass and shape are related to seed persistence, (ii) whether this relationship is consistent across plant functional groups, and (iii) whether seed mass and shape are correlated in different functional groups?
Methods: We collected data on the seed mass and persistence of species and performed measurements to calculate their Seed Shape Index, with higher values indicating greater deviation from sphericity. To account for phylogenetic non-independence, we analysed how seed mass and Seed Shape Index affect persistence in all herbaceous species and separately in four plant functional groups using phylogenetic logistic regressions. To test how seed mass and shape are related to each other in these groups, we applied PGLS regression.
Key results: Across all species, both seed mass and Seed Shape Index were negatively related to persistence, with seed mass having a stronger association. The same relationship was observed in forbs and short-lived species, but only seed shape was related to persistence in graminoid species. The relationship between seed mass and seed shape also varied between functional groups.
Conclusions: Consistent with many studies in other floras, both seed mass and shape were negatively related to persistence in the Pannonian flora after accounting for phylogeny. However, only seed shape was associated with persistence in graminoid species, suggesting that different factors may be at play in forbs and graminoids. Therefore, future studies of this relationship may need to treat and analyse graminoids separately.
{"title":"Inconsistent relationships detected between seed size, shape, and persistence for different plant functional groups in the Pannonian flora.","authors":"Viktória Törő-Szijgyártó, Péter Török, Katalin Tóth, Hajnalka Málik-Roffa, Luis Roberto Guallichico Suntaxi, Szilvia Madar, Gergely Kovacsics-Vári, Andrea McIntosh-Buday, Patricia Díaz Cando, Judit Sonkoly","doi":"10.1093/aob/mcaf322","DOIUrl":"https://doi.org/10.1093/aob/mcaf322","url":null,"abstract":"<p><strong>Background and aims: </strong>Knowledge on seed persistence is vital from both theoretical and practical considerations but directly collecting persistence data for many species is unfeasible. Therefore, there is a need to identify traits associated with seed persistence, but studies about the effects of seed size and shape on persistence yielded results varying across regions. We studied 392 species of the Pannonian flora (Central Europe) to asses (i) how seed mass and shape are related to seed persistence, (ii) whether this relationship is consistent across plant functional groups, and (iii) whether seed mass and shape are correlated in different functional groups?</p><p><strong>Methods: </strong>We collected data on the seed mass and persistence of species and performed measurements to calculate their Seed Shape Index, with higher values indicating greater deviation from sphericity. To account for phylogenetic non-independence, we analysed how seed mass and Seed Shape Index affect persistence in all herbaceous species and separately in four plant functional groups using phylogenetic logistic regressions. To test how seed mass and shape are related to each other in these groups, we applied PGLS regression.</p><p><strong>Key results: </strong>Across all species, both seed mass and Seed Shape Index were negatively related to persistence, with seed mass having a stronger association. The same relationship was observed in forbs and short-lived species, but only seed shape was related to persistence in graminoid species. The relationship between seed mass and seed shape also varied between functional groups.</p><p><strong>Conclusions: </strong>Consistent with many studies in other floras, both seed mass and shape were negatively related to persistence in the Pannonian flora after accounting for phylogeny. However, only seed shape was associated with persistence in graminoid species, suggesting that different factors may be at play in forbs and graminoids. Therefore, future studies of this relationship may need to treat and analyse graminoids separately.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145740709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
José Angel García-Beltrán, Sandy Toledo, María Paz Melo-Gaymer, Marcelo R Rosas, Anita Cisternas-Fuentes, Pablo C Guerrero
Background and objectives: The hyperarid-semiarid gradient of the western Andes, from the coastal Atacama Desert to central Mediterranean Chile, hosts exceptional plant endemism driven by paleoclimatic oscillations, rugged topography, and long-term isolation. Here, we use the columnar cactus genus Leucostele as a model to (1) quantify the influence of geographic isolation and topographic heterogeneity on genome-wide divergence, and (2) test whether zones of secondary contact foster genetic admixture.
Methods: We genotyped 151 individuals from 20 populations of Leucostele using 9,397 SNPs to assess spatial genetic structure, isolation by distance, and the influence of terrain ruggedness and geographic isolation on admixture.
Key results: Spatial ancestry analyses delineated ten latitudinal genetic clusters, with eight populations exhibiting > 75 % ancestry assignment to a single cluster and twelve showing varying degrees of admixture. Genetic differentiation increased with geographic distance, revealing strong isolation by distance across Atacama Desert to southern central Chile. Admixture, quantified as Shannon entropy, varied among populations and decreased significantly with both increasing terrain ruggedness and greater geographic isolation.
Conclusions: Our study reveals that rugged topography and spatial isolation promote genomic divergence by limiting gene flow and fostering distinct genetic clusters while less rugged terrain facilitates secondary contact and admixture, showing that these barriers remain permeable and reproductive isolation is incomplete. This dual influence of topographic heterogeneity underpins the dynamic evolutionary mosaic observed across the coastal Atacama Desert-central Chile gradient.
{"title":"Geographic distance and landscape ruggedness shape genome-wide divergence and admixture in Leucostele cacti across the Atacama-central Chile biodiversity hotspot.","authors":"José Angel García-Beltrán, Sandy Toledo, María Paz Melo-Gaymer, Marcelo R Rosas, Anita Cisternas-Fuentes, Pablo C Guerrero","doi":"10.1093/aob/mcaf323","DOIUrl":"https://doi.org/10.1093/aob/mcaf323","url":null,"abstract":"<p><strong>Background and objectives: </strong>The hyperarid-semiarid gradient of the western Andes, from the coastal Atacama Desert to central Mediterranean Chile, hosts exceptional plant endemism driven by paleoclimatic oscillations, rugged topography, and long-term isolation. Here, we use the columnar cactus genus Leucostele as a model to (1) quantify the influence of geographic isolation and topographic heterogeneity on genome-wide divergence, and (2) test whether zones of secondary contact foster genetic admixture.</p><p><strong>Methods: </strong>We genotyped 151 individuals from 20 populations of Leucostele using 9,397 SNPs to assess spatial genetic structure, isolation by distance, and the influence of terrain ruggedness and geographic isolation on admixture.</p><p><strong>Key results: </strong>Spatial ancestry analyses delineated ten latitudinal genetic clusters, with eight populations exhibiting > 75 % ancestry assignment to a single cluster and twelve showing varying degrees of admixture. Genetic differentiation increased with geographic distance, revealing strong isolation by distance across Atacama Desert to southern central Chile. Admixture, quantified as Shannon entropy, varied among populations and decreased significantly with both increasing terrain ruggedness and greater geographic isolation.</p><p><strong>Conclusions: </strong>Our study reveals that rugged topography and spatial isolation promote genomic divergence by limiting gene flow and fostering distinct genetic clusters while less rugged terrain facilitates secondary contact and admixture, showing that these barriers remain permeable and reproductive isolation is incomplete. This dual influence of topographic heterogeneity underpins the dynamic evolutionary mosaic observed across the coastal Atacama Desert-central Chile gradient.</p>","PeriodicalId":8023,"journal":{"name":"Annals of botany","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145740676","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}