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Probing protein function with small molecules. 用小分子探测蛋白质功能。
Pub Date : 2006-01-01 DOI: 10.1007/978-3-540-37635-4_5
J D Gough, C M Crews

The interface of chemistry and biology offers many opportunities to explore different aspects of cell biology. The emerging field of chemical genetics is providing the chemical means to understand biological systems not easily accessible using classical genetic manipulations. In this article, we will discuss how natural product mode of action studies and novel bio-organic manipulation of intracellular protein levels are proving useful in the exploration of cell biology.

化学和生物学的结合为探索细胞生物学的不同方面提供了许多机会。化学遗传学的新兴领域提供了化学手段来理解生物系统不容易使用经典的遗传操作。在本文中,我们将讨论天然产物的作用模式研究和细胞内蛋白质水平的新型生物有机操作如何在细胞生物学的探索中被证明是有用的。
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引用次数: 1
Role of ubiquitin-like proteins in transcriptional regulation. 泛素样蛋白在转录调控中的作用。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-37633-x_10
R T Hay

Conjugation of ubiquitin-like proteins (Ubls) to components of the transcriptional machinery represents an important mechanism to allow switching between different activity states. While ubiquitin modification of transcription factors is associated with transcriptional activation, SUMO modification of transcription factors is most often associated with transcriptional repression. Recent experiments indicate that another Ubl, NEDD8, can also influence transcription. One of the characteristics of Ubl modification is that the biological consequences of conjugation do not appear proportionate to the small fraction of substrate that is modified. The low steady state levels of Ubl-modified substrates can be attributed to a highly dynamic situation in which proteins are conjugated to a particular Ubl only for the modification to be removed by Ubl-specific proteases. It therefore appears that an unmodified protein with a history of Ubl modification may have different properties from a protein that never has been modified. Here the diverse effects of Ubl modification are discussed and models proposed to explain Ubl actions.

泛素样蛋白(Ubls)与转录机制组成部分的结合是允许在不同活性状态之间切换的重要机制。转录因子的泛素修饰与转录激活有关,而转录因子的SUMO修饰通常与转录抑制有关。最近的实验表明,另一种Ubl NEDD8也可以影响转录。Ubl修饰的一个特点是,共轭的生物学后果并不与被修饰的底物的一小部分成比例。Ubl修饰底物的低稳态水平可归因于一种高度动态的情况,在这种情况下,蛋白质与特定的Ubl结合,只为了被Ubl特异性蛋白酶去除修饰。因此,具有Ubl修饰历史的未修饰蛋白可能与从未修饰过的蛋白具有不同的性质。本文讨论了Ubl变化的各种影响,并提出了解释Ubl作用的模型。
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引用次数: 32
New therapeutics targets in chronic viral cardiomyopathy. 新疗法针对慢性病毒性心肌病。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-30822-9_16
W Poller, H Fechner, U Kühl, M Pauschinger, H P Schultheiss

Dilated cardiomyopathy (DCM) is a prevalent heart muscle disease characterized by impaired contractility and dilation of the ventricles. Recent clinical research suggests that cardiotropic viruses are important environmental pathogenic factors in human DCM, which may therefore be considered as a chronic viral cardiomyopathy. All virus-positive DCM patients thus come into the focus of virological research and should be considered for antiviral strategies. Interferon-beta therapy has been shown to mediate virus elimination in patients with adenovirus or coxsackievirus persistence. We discuss here several possible new molecular targets for patients infected with cardiotropic viruses in (1) the cellular virus uptake system, (2) virus-induced cellular signaling pathways, and (3) interactions between virus-encoded proteins with important cellular target proteins. The potential of these approaches in the setting of a chronic viral infection is significantly different from that in an acute viral infection. Specific problems encountered in a chronic situation and possible solutions are discussed.

扩张型心肌病(DCM)是一种常见的心脏肌肉疾病,其特征是心室收缩和扩张功能受损。最近的临床研究表明,嗜心病毒是人类DCM的重要环境致病因素,因此可能被认为是一种慢性病毒性心肌病。因此,所有病毒阳性的DCM患者都成为病毒学研究的重点,并应考虑抗病毒策略。干扰素治疗已被证明可介导腺病毒或柯萨奇病毒持续性患者的病毒消除。我们在此讨论了嗜心病毒感染患者的几个可能的新分子靶点,包括(1)细胞病毒摄取系统,(2)病毒诱导的细胞信号通路,以及(3)病毒编码蛋白与重要细胞靶蛋白之间的相互作用。这些方法的潜力在慢性病毒感染的设置是明显不同于急性病毒感染。讨论了在长期情况下遇到的具体问题和可能的解决方案。
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引用次数: 2
TNF blockade: an inflammatory issue. TNF阻断:炎性问题。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-37673-9_10
B B Aggarwal, S Shishodia, Y Takada, D Jackson-Bernitsas, K S Ahn, G Sethi, H Ichikawa

Tumor necrosis factor (TNF), initially discovered as a result of its antitumor activity, has now been shown to mediate tumor initiation, promotion, and metastasis. In addition, dysregulation of TNF has been implicated in a wide variety of inflammatory diseases including rheumatoid arthritis, Crohn's disease, multiple sclerosis, psoriasis, scleroderma, atopic dermatitis, systemic lupus erythematosus, type II diabetes, atherosclerosis, myocardial infarction, osteoporosis, and autoimmune deficiency disease. TNF, however, is a critical component of effective immune surveillance and is required for proper proliferation and function of NK cells, T cells, B cells, macrophages, and dendritic cells. TNF activity can be blocked, either by using antibodies (Remicade and Humira) or soluble TNF receptor (Enbrel), for the symptoms of arthritis and Crohn's disease to be alleviated, but at the same time, such treatment increases the risk of infections, certain type of cancers, and cardiotoxicity. Thus blockers of TNF that are safe and yet efficacious are urgently needed. Some evidence suggests that while the transmembrane form of TNF has beneficial effects, soluble TNF mediates toxicity. In most cells, TNF mediates its effects through activation of caspases, NF-kappaB, AP-1, c-jun N-terminal kinase, p38 MAPK, and p44/p42 MAPK. Agents that can differentially regulate TNF expression or TNF signaling can be pharmacologically safe and effective therapeutics. Our laboratory has identified numerous such agents from natural sources. These are discussed further in detail.

肿瘤坏死因子(TNF)最初是由于其抗肿瘤活性而被发现的,现在已被证明介导肿瘤的发生、促进和转移。此外,TNF的失调与多种炎症性疾病有关,包括类风湿性关节炎、克罗恩病、多发性硬化症、牛皮癣、硬皮病、特应性皮炎、系统性红斑狼疮、II型糖尿病、动脉粥样硬化、心肌梗死、骨质疏松症和自身免疫性缺陷疾病。然而,TNF是有效免疫监视的关键组成部分,是NK细胞、T细胞、B细胞、巨噬细胞和树突状细胞正常增殖和功能所必需的。可以通过使用抗体(Remicade和Humira)或可溶性TNF受体(Enbrel)来阻断TNF活性,以减轻关节炎和克罗恩病的症状,但同时,这种治疗增加了感染、某些类型癌症和心脏毒性的风险。因此,迫切需要安全有效的TNF阻滞剂。一些证据表明,虽然TNF的跨膜形式具有有益作用,但可溶性TNF介导毒性。在大多数细胞中,TNF通过激活caspases、NF-kappaB、AP-1、c-jun n末端激酶、p38 MAPK和p44/p42 MAPK来介导其作用。可以调节TNF表达或TNF信号的药物在药理学上是安全有效的治疗方法。我们的实验室已经从自然来源中鉴定出许多这样的药剂。我们将进一步详细讨论这些问题。
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引用次数: 122
Recent insights into the role of host innate and acquired immunity responses. 最近对宿主先天和获得性免疫反应的作用的见解。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-30822-9_8
P Liu, K Fuse, G Chu, Y Liu, A Opavsky

Viral myocarditis can present as dramatic heart failure in the young, and chronic indolent cardiomyopathy in the older adult. The outcome of the disease is still poor, associated with high mortality during long-term follow-up. Enteroviral myocarditis serves as an excellent model to understand virus and host interactions. The virus enters the target cells via collaborating receptors, and this process triggers an inflammatory response in the host. The immune reaction is a two-edged sword, with appropriate activation of the immune system capable of clearing the virus, but excessive activation leads to a chronic inflammatory process that triggers the remodeling of the heart and consequent clinical heart failure. Through genetic dissection strategies, we have identified that the acquired immune system is activated through the T cell receptor and signaling amplification systems, such as the tyrosine kinase p56lck, phosphatase CD45 and downstream ERK1/2, and the family of cytokines. This signaling system not only promotes inflammatory cell clonal expansion but paradoxically also promotes viral proliferation. The innate immune system is now recognized as playing an ever-expanding role in coordinating the host immune response through the Toll-like receptors, triggering downstream signaling adaptors such as MyD88, IRAK, and TRIF/IRFs. These lead to activation of cytokines or interferons, depending on the balance of the signal contributions. The ongoing research in this area should help us to understand the immune response of the heart to viral infection, while identifying potential targets for therapy.

病毒性心肌炎可在年轻人中表现为戏剧性的心力衰竭,在老年人中表现为慢性惰性心肌病。该病的预后仍然很差,长期随访期间死亡率高。肠病毒性心肌炎是了解病毒与宿主相互作用的一个很好的模型。病毒通过合作受体进入目标细胞,这一过程在宿主体内引发炎症反应。免疫反应是一把双刃剑,适当激活免疫系统能够清除病毒,但过度激活会导致慢性炎症过程,从而引发心脏重塑和随后的临床心力衰竭。通过遗传解剖策略,我们已经确定获得性免疫系统是通过T细胞受体和信号放大系统激活的,如酪氨酸激酶p56lck、磷酸酶CD45和下游的ERK1/2,以及细胞因子家族。该信号系统不仅促进炎症细胞克隆扩增,而且矛盾地促进病毒增殖。先天免疫系统现在被认为通过toll样受体在协调宿主免疫反应中发挥着不断扩大的作用,触发下游信号适配器,如MyD88、IRAK和TRIF/ irf。这些导致细胞因子或干扰素的激活,这取决于信号贡献的平衡。这一领域正在进行的研究应该有助于我们了解心脏对病毒感染的免疫反应,同时确定潜在的治疗目标。
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引用次数: 7
Inflammatory cardiomyopathy: there is a specific matrix destruction in the course of the disease. 炎症性心肌病:病程中有特异性基质破坏。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-30822-9_13
J A Towbin

Cardiomyopathies are responsible for a high proportion of cases of congestive heart failure and sudden death, as well as for the need for transplantation. Understanding of the causes of these disorders has been sought in earnest over the past decade. We hypothesized that DCM is a disease of the cytoskeleton/sarcolemma, which affects the sarcomere. Evaluation of the sarcolemma in DCM and other forms of systolic heart failure demonstrates membrane disruption; and, secondarily, the extracellular matrix architecture is also affected. Disruption of the links from the sarcolemma to ECM at the dystrophin C-terminus and those to the sarcomere and nucleus via N-terminal dystrophin interactions could lead to a "domino effect" disruption of systolic function and development of arrhythmias. We also have suggested that dystrophin mutations play a role in idiopathic DCM in males. The T-cap/MLP/alpha-actinin/titin complex appears to stabilize Z-disc function via mechanical stretch sensing. Loss of elasticity results in the primary defect in the endogenous cardiac muscle stretch sensor machinery. The over-stretching of individual myocytes leads to activation of cell death pathways, at a time when stretch-regulated survival cues are diminished due to defective stretch sensing, leading to progression of heart failure. Genetic DCM and the acquired disorder viral myocarditis have the same clinical features including heart failure, arrhythmias, and conduction block, and also similar mechanisms of disease based on the proteins targeted. In dilated cardiomyopathy, the process of progressive ventricular dilation and changes of the shape of the ventricle to a more spherical shape, associated with changes in ventricular function and/or hypertrophy, occurs without known initiating disturbance. In those cases in which resolution of cardiac dysfunction does not occur, chronic DCM results. It has been unclear what the underlying etiology of this long-term sequela could be, but viral persistence and autoimmunity have been widely speculated.

心肌病是导致大量充血性心力衰竭和猝死的原因,也是心脏移植的原因。在过去的十年中,人们一直在认真地寻求对这些疾病的原因的理解。我们假设DCM是一种影响肌节的细胞骨架/肌膜疾病。DCM和其他形式收缩期心力衰竭的肌膜评估显示膜破坏;其次,细胞外基质结构也受到影响。肌营养不良蛋白c端连接肌膜至ECM,以及通过n端肌营养不良蛋白相互作用连接肌节和细胞核的连接被破坏,可能导致收缩功能破坏和心律失常的“多米诺骨牌效应”。我们也认为肌营养不良蛋白突变在男性特发性DCM中起作用。T-cap/MLP/ α -肌动蛋白/肌动蛋白复合物似乎通过机械拉伸传感稳定z -盘功能。弹性丧失是内源性心肌拉伸传感器的主要缺陷。单个肌细胞的过度拉伸导致细胞死亡途径的激活,此时拉伸调节的生存线索由于拉伸感知缺陷而减少,导致心力衰竭的进展。遗传性DCM与获得性疾病病毒性心肌炎具有心力衰竭、心律失常、传导阻滞等相同的临床特征,基于靶向蛋白的疾病机制也相似。在扩张型心肌病中,进行性心室扩张和心室形状向更球形改变的过程,与心室功能改变和/或肥厚相关,在没有已知的初始干扰的情况下发生。在这些情况下,解决心功能障碍没有发生,慢性DCM的结果。目前尚不清楚这种长期后遗症的潜在病因是什么,但病毒的持久性和自身免疫已被广泛推测。
{"title":"Inflammatory cardiomyopathy: there is a specific matrix destruction in the course of the disease.","authors":"J A Towbin","doi":"10.1007/3-540-30822-9_13","DOIUrl":"https://doi.org/10.1007/3-540-30822-9_13","url":null,"abstract":"<p><p>Cardiomyopathies are responsible for a high proportion of cases of congestive heart failure and sudden death, as well as for the need for transplantation. Understanding of the causes of these disorders has been sought in earnest over the past decade. We hypothesized that DCM is a disease of the cytoskeleton/sarcolemma, which affects the sarcomere. Evaluation of the sarcolemma in DCM and other forms of systolic heart failure demonstrates membrane disruption; and, secondarily, the extracellular matrix architecture is also affected. Disruption of the links from the sarcolemma to ECM at the dystrophin C-terminus and those to the sarcomere and nucleus via N-terminal dystrophin interactions could lead to a \"domino effect\" disruption of systolic function and development of arrhythmias. We also have suggested that dystrophin mutations play a role in idiopathic DCM in males. The T-cap/MLP/alpha-actinin/titin complex appears to stabilize Z-disc function via mechanical stretch sensing. Loss of elasticity results in the primary defect in the endogenous cardiac muscle stretch sensor machinery. The over-stretching of individual myocytes leads to activation of cell death pathways, at a time when stretch-regulated survival cues are diminished due to defective stretch sensing, leading to progression of heart failure. Genetic DCM and the acquired disorder viral myocarditis have the same clinical features including heart failure, arrhythmias, and conduction block, and also similar mechanisms of disease based on the proteins targeted. In dilated cardiomyopathy, the process of progressive ventricular dilation and changes of the shape of the ventricle to a more spherical shape, associated with changes in ventricular function and/or hypertrophy, occurs without known initiating disturbance. In those cases in which resolution of cardiac dysfunction does not occur, chronic DCM results. It has been unclear what the underlying etiology of this long-term sequela could be, but viral persistence and autoimmunity have been widely speculated.</p>","PeriodicalId":80277,"journal":{"name":"Ernst Schering Research Foundation workshop","volume":" 55","pages":"219-50"},"PeriodicalIF":0.0,"publicationDate":"2006-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/3-540-30822-9_13","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25737263","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Diversity oriented synthesis: a challenge for synthetic chemists. 面向多样性的合成:对合成化学家的挑战。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-37635-6_4
A. Bender, S. Fergus, W. R. Galloway, F. G. Glansdorp, D. M. Marsden, R. L. Nicholson, R. J. Spandl, G. Thomas, E. Wyatt, R. Glen, D. Spring
{"title":"Diversity oriented synthesis: a challenge for synthetic chemists.","authors":"A. Bender, S. Fergus, W. R. Galloway, F. G. Glansdorp, D. M. Marsden, R. L. Nicholson, R. J. Spandl, G. Thomas, E. Wyatt, R. Glen, D. Spring","doi":"10.1007/3-540-37635-6_4","DOIUrl":"https://doi.org/10.1007/3-540-37635-6_4","url":null,"abstract":"","PeriodicalId":80277,"journal":{"name":"Ernst Schering Research Foundation workshop","volume":"58 1","pages":"47-60"},"PeriodicalIF":0.0,"publicationDate":"2006-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"51561267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Cell-cell fusion as a means to establish pluripotency. 细胞-细胞融合作为建立多能性的手段。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-31437-7_4
J T Do, H R Schöler

Embryonic stem cells (ESCs), embryonic germ cells (EGCs), and embryonic carcinoma cells (ECCs) are three types of pluripotent cells derived from mammalian embryos. The three cell types are capable not only of self-renewal, but also of having the potential to give rise to cells of all tissue types in the fetal and adult body. In several reports, ESCs, ECCs, and EGCs have been described to reprogram somatic cells in vitro. After reprogramming caused by fusion, somatic cells exhibit various features of pluripotent cells: expression of pluripotency markers (e.g., Oct4, nanog, and Rex-1), absence of tissue-specific gene expression, reactivation of inactive X chromosome of female somatic cells, demethylation, as well as histone modification. An activity in pluripotent stem cells appears to be capable of inducing the global changes inherent in the reprogramming of somatic cells. Investigations involving pluripotent stem cells will yield substantial insight into various fundamental biological processes, such as cellular differentiation and de-differentiation. Most importantly for the public, however, is that such studies might lead into cell-based therapies and as such have the potential to change regenerative medicine.

胚胎干细胞(ESCs)、胚胎生殖细胞(EGCs)和胚胎癌细胞(ECCs)是来源于哺乳动物胚胎的三种多能细胞。这三种类型的细胞不仅能够自我更新,而且有可能在胎儿和成人体内产生所有组织类型的细胞。在一些报道中,ESCs, ECCs和EGCs已经被描述为体外体细胞重编程。体细胞经过融合引起的重编程后,表现出多能性细胞的各种特征:多能性标记物(如Oct4、nanog和Rex-1)的表达,缺乏组织特异性基因的表达,女性体细胞无活性X染色体的再激活,去甲基化,以及组蛋白修饰。多能干细胞中的一种活性似乎能够诱导体细胞重编程中固有的全局变化。涉及多能干细胞的研究将对各种基本生物学过程产生实质性的见解,例如细胞分化和去分化。然而,对公众来说最重要的是,这些研究可能会导致基于细胞的疗法,因此有可能改变再生医学。
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引用次数: 22
Toward reprogramming cells to pluripotency. 朝着将细胞重编程为多能性的方向发展。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-31437-7_5
P Collas, C K Taranger

The possibility of turning one somatic cell type into another may in the long run have beneficial applications in regenerative medicine. Somatic cell nuclear transfer (therapeutic cloning) may offer this possibility; however, ethical guidelines prevent application of this technology in many in countries. As a result, alternative approaches are being developed for altering cell fate. This communication discusses recent non-nuclear transfer-based in vitro approaches for reprogramming cells and enhancing their potential for differentiation toward various lineages.

从长远来看,将一种体细胞类型转化为另一种体细胞类型的可能性可能在再生医学中有有益的应用。体细胞核移植(治疗性克隆)可能提供这种可能性;然而,在许多国家,伦理准则阻止了这项技术的应用。因此,人们正在开发改变细胞命运的替代方法。本文讨论了最近基于非核转移的体外细胞重编程方法,并增强了它们向各种谱系分化的潜力。
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引用次数: 8
Transplantation of germ line stem cells for the study and manipulation of spermatogenesis. 生殖系干细胞移植用于精子发生的研究和操作。
Pub Date : 2006-01-01 DOI: 10.1007/3-540-31437-7_12
I Dobrinski

Transplantation of male germ line stem cells from a fertile donor to the testis of an infertile recipient restores donor-derived spermatogenesis in the recipient testis and the resulting sperm pass the donor genotype to the offspring of the recipient. Germ cell transplantation has been an invaluable tool to elucidate the biology of male germ line stem cells and their niche in the testis, develop systems to isolate and culture spermatogonial stem cells, examine defects in spermatogenesis, correct male infertility and introduce genetic changes into the male germ line. Although most widely studied in rodents, germ cell transplantation has been applied to larger mammals, including primates. Recently, ectopic grafting of testis tissue from diverse donor species, including primates, into a mouse host has opened an additional possibility to study spermatogenesis and to produce fertile sperm from immature donors. Testis xenografts are ideally suitable to study toxicants or drugs with the potential to enhance or suppress male fertility without the necessity of performing experiments in the target species. Therefore, transplantation of germ cells or xenografting of testis tissue represent powerful approaches for the study, preservation, and manipulation of male fertility.

将来自可育供体的雄性生殖系干细胞移植到不育受者的睾丸中,可以恢复供体来源的精子在受者睾丸中的发生,由此产生的精子将供体基因型传递给受者的后代。生殖细胞移植已成为阐明男性生殖系干细胞生物学及其在睾丸中的生态位,开发分离和培养精子干细胞的系统,检查精子发生缺陷,纠正男性不育以及向男性生殖系引入遗传变化的宝贵工具。尽管在啮齿类动物中进行了广泛的研究,但生殖细胞移植已应用于包括灵长类动物在内的大型哺乳动物。最近,来自不同供体物种(包括灵长类动物)的睾丸组织异位移植到小鼠宿主中,为研究精子发生和从未成熟供体中产生可育精子提供了额外的可能性。睾丸异种移植非常适合研究有可能增强或抑制男性生育能力的毒物或药物,而无需在目标物种中进行实验。因此,生殖细胞移植或睾丸组织异种移植是研究、保存和操纵男性生育能力的有力途径。
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引用次数: 4
期刊
Ernst Schering Research Foundation workshop
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