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Regulatory networks: Linking toxin production and sporulation in Clostridioides difficile 调控网络:将难辨梭状芽孢杆菌的毒素生产和孢子繁殖联系起来。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.anaerobe.2024.102920
Md Kamrul Hasan, Oluchi Alaribe, Revathi Govind
Clostridioides difficile has been recognized as an important nosocomial pathogen that causes diarrheal disease as a consequence of antibiotic exposure and costs the healthcare system billions of dollars every year. C. difficile enters the host gut as dormant spores, germinates into vegetative cells, colonizes the gut, and produces toxins TcdA and/or TcdB, leading to diarrhea and inflammation. Spores are the primary transmission vehicle, while the toxins A and B directly contribute to the disease. Thus, toxin production and sporulation are the key traits that determine the success of C. difficile as a pathogen. Both toxins and spores are produced during the late stationary phase in response to various stimuli. This review provides a comprehensive analysis of the current knowledge on the molecular mechanisms, highlighting the regulatory pathways that interconnect toxin gene expression and sporulation in C. difficile. The roles of carbohydrates, amino acids and other nutrients and signals, in modulating these virulence traits through global regulatory networks are discussed. Understanding the links within the gene regulatory network is crucial for developing effective therapeutic strategies against C. difficile infections, potentially leading to targeted interventions that disrupt the co-regulation of toxin production and sporulation.
艰难梭菌已被公认为一种重要的院内病原体,它因接触抗生素而导致腹泻,每年给医疗系统造成数十亿美元的损失。艰难梭菌以休眠孢子的形式进入宿主肠道,发芽成为无性细胞,在肠道内定植,并产生毒素 TcdA 和/或 TcdB,导致腹泻和炎症。孢子是主要的传播媒介,而毒素 A 和毒素 B 则直接导致疾病。因此,产生毒素和孢子是决定艰难梭菌能否成为病原体的关键特征。在静止后期,毒素和孢子都会在各种刺激下产生。本综述全面分析了有关分子机制的现有知识,重点介绍了艰难梭菌毒素基因表达和孢子产生之间的调控途径。文中讨论了碳水化合物、氨基酸和其他营养物质及信号在通过全球调控网络调节这些毒力特征方面的作用。了解基因调控网络内部的联系对于开发针对艰难梭菌感染的有效治疗策略至关重要,有可能导致有针对性的干预措施,破坏毒素生产和孢子生成的共同调控。
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引用次数: 0
New insights into the factors influencing methanogenic pathways in anaerobic digesters 厌氧消化器中影响产甲烷途径因素的新见解。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.anaerobe.2024.102925
Helena Rodrigues Oliveira , Thuane Mendes Anacleto , Fernanda Abreu , Alex Enrich-Prast

Introduction

Anaerobic digestion integrates waste treatment, energy generation, and nutrient recycling, producing methane mainly through acetoclastic (AM) and hydrogenotrophic methanogenesis (HM). Methanogenic pathway management can improve biogas productivity and quality. The balance between pathways is influenced by environmental and physicochemical conditions, with conflicting results on the effect of different factors often reported. This systematic review aims to clarify the influence of various parameters on methanogenic pathways in anaerobic digesters.

Methods

Literature search was conducted in the Web of Science and Scopus databases. The effects of different parameters on the predominant methanogenic pathway were evaluated using Kruskal-Wallis tests and Spearman's rank correlation.

Results

Thermophilic temperatures and high free ammonia nitrogen concentrations (>300 mg L−1) increase HM, with a strong combined effect of these variables. Conversely, under moderate temperature and ammonia concentrations, the primary feedstock influences the methanogenic pathway, with algae biomass, pig manure, and food industry wastewater showing the lowest contribution of hydrogenotrophic methanogens. pH effect varied with temperature, with acidic and alkaline pH favoring HM in mesophilic and thermophilic digesters, respectively. Furthermore, higher levels of volatile fatty acids (>2000 mg L−1), carbohydrates (>10 g/L) and lipids (>10 g/L) also appeared to favor HM over AM, while most metals – especially Cr, Se and W – promoted AM.

Conclusion

This study emphasizes the role of various factors in methanogenic pathway selection, highlighting the impact of previously overlooked parameters, such as inorganic elements and organic matter composition. These insights are essential for understanding the methanogenic pathway balance and optimizing biogas processes.
简介:厌氧消化集废物处理、能量生成和营养物质循环为一体,主要通过醋酸破酯(AM)和氢营养产甲烷(HM)产生甲烷。产甲烷途径管理可以提高沼气产量和质量。途径之间的平衡受环境和物理化学条件的影响,不同因素的影响结果往往相互矛盾。本文旨在阐明厌氧消化池中各种参数对产甲烷途径的影响。方法:在Web of Science和Scopus数据库中进行文献检索。采用Kruskal-Wallis检验和Spearman秩相关法评价不同参数对主要产甲烷途径的影响。结果:嗜热温度和高游离氨氮浓度(约300 mg/L)使HM升高,且具有较强的综合效应。相反,在中等温度和氨浓度下,主要原料对产甲烷途径有影响,藻类生物质、猪粪和食品工业废水对氢营养型产甲烷菌的贡献最小。pH值的影响随温度的变化而变化,酸性和碱性pH值分别有利于中温消化器和嗜热消化器中的HM。此外,较高水平的挥发性脂肪酸(2000 mg/L)、碳水化合物(10 g/L)和脂质(10 g/L)似乎也有利于HM而不是AM,而大多数金属——尤其是Cr、Se和W——促进AM。结论:本研究强调了多种因素在产甲烷途径选择中的作用,突出了以前被忽视的参数,如无机元素和有机质组成的影响。这些见解对于理解产甲烷途径平衡和优化沼气过程至关重要。
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引用次数: 0
Chitin promotes equol production via n-acetylglucosamine in human fecal cultures 甲壳素通过人体粪便培养物中的正乙酰葡糖胺促进等醇的产生。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.anaerobe.2024.102923
Miyuki Kodera , Kohei Nakamura , S. Yokoyama

Objectives

Equol is a metabolite of isoflavone. Here, we investigated the effect of dietary fiber on equol-producing microbiota.

Methods

Human feces was anaerobically cultured in Gifu Anaerobic Medium (GAM) containing 1 mg/L daidzein supplemented with 1 % (w/v) dietary fiber (pectin, chitin, or resistant starch [RS]). The equol conversion rate, number of equol-producing bacteria, pH, short-chain fatty acids (SCFAs), and microbial composition were measured in fecal cultures.

Results

Equol conversion significantly increased by 2.7-fold in the chitin group compared with the control group. Conversely, the conversion rate decreased to one-tenth in the pectin group and one-third in the RS group. The number of equol-producing bacteria also significantly increased in the chitin group compared with the control group. Whereas pH values and acetate/propionate concentrations decreased in the pectin and RS groups compared with the control group, no significant differences were observed in the chitin group. Microbiota analysis indicated that the relative abundances of Bifidobacterium and Lactobacillus increased, whereas those of Dorea, Lachnoclostridium, and Eggerthella decreased in the pectin and RS groups. In contrast, these abundances remained stable in the chitin group. The relative abundances of Adlercreutzia and Slackia remained unchanged across all groups. In vitro cultures of Eggerthella sp. strain YY7918 and Adlercreutzia equolifaicens JCM14793 demonstrated that equol conversion from daidzein was stimulated by the addition of 0.5–1% (w/v) n-acetylglucosamine, a breakdown product of chitin, but not chitin itself.

Conclusions

Our findings suggest that equol production is stimulated by n-acetylglucosamine, derived from decomposed chitin, in certain equol-producing bacteria without affecting their growth.
目标等醇是异黄酮的代谢产物。方法:将人类粪便置于含有 1 mg/L 地屈孕酮、辅以 1%(w/v)膳食纤维(果胶、甲壳素或抗性淀粉 [RS])的岐阜厌氧培养基(GAM)中进行厌氧培养。粪便培养物中的等醇转化率、等醇产生菌数量、pH值、短链脂肪酸(SCFAs)和微生物组成都得到了测定:结果:与对照组相比,甲壳素组的等醇转化率明显提高了 2.7 倍。相反,果胶组的转化率降至十分之一,RS 组降至三分之一。与对照组相比,甲壳素组产生马钱子醇的细菌数量也明显增加。与对照组相比,果胶组和 RS 组的 pH 值和乙酸盐/丙酸盐浓度均有所下降,而甲壳素组则无明显差异。微生物群分析表明,在果胶组和 RS 组中,双歧杆菌和乳酸杆菌的相对丰度增加了,而 Dorea、Lachnoclostridium 和 Eggerthella 的相对丰度降低了。相比之下,甲壳素组中的这些丰度保持稳定。Adlercreutzia 和 Slackia 的相对丰度在所有组中都保持不变。Eggerthella sp. 菌株 YY7918 和 Adlercreutzia equolifaicens JCM14793 的体外培养结果表明,添加 0.5-1%(w/v)的正乙酰葡糖胺(几丁质的分解产物)可刺激由 Daidzein 转化为赤藓糖醇,但几丁质本身不会:我们的研究结果表明,在某些产生等醇的细菌中,分解甲壳素的正乙酰葡糖胺会刺激等醇的产生,而不会影响它们的生长。
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引用次数: 0
A rare isolation of Parvimonas micra from cerebellar abscess in a patient with complex cyanotic heart disease.
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2025-01-31 DOI: 10.1016/j.anaerobe.2025.102943
Praveen Ravichandran, Ramit Kundu, Rakhi Biswas, Sathiaprabhu Anbazhagan

Parvimonas micra is a gram-positive coccus which is an obligate anaerobe. It is a commensal in the oropharyngeal cavity and the gastrointestinal tract. The genus Parvimonas has only a single species, P. micra. Although there are several reports of infections due to P. micra involving various body sites, cases of brain abscess due to this organism have been under-reported in the literature. Here we present a rare case of cerebellar abscess caused by P. micra in a nine-year-old boy with complex cyanotic heart disease.

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引用次数: 0
A rubrerythrin locus of Clostridioides difficile encodes enzymes that efficiently detoxify reactive oxygen species.
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2025-01-31 DOI: 10.1016/j.anaerobe.2025.102941
Robert Knop, Simon Keweloh, Johanna Pukall, Silvia Dittmann, Daniela Zühlke, Susanne Sievers

Objectives: The microaerophilic conditions in the large intestine and reactive oxygen species (ROS) produced by the immune system represent a challenge for the strictly anaerobic pathogen Clostridioides difficile, which protects itself by a variety of oxidative stress proteins. Four of these are encoded in an operon that has been implicated in the detoxification of H2O2 and O2●-. In this study, proteins of this operon, i. e. a rubrerythrin (Rbr), a superoxide reductase (Sor) and a putative glutamate dehydrogenase (CD630_08280) were investigated for their ROS detoxifying activity in vitro.

Methods: Recombinant proteins were overexpressed in C. difficile and purified anaerobically by affinity chromatography. The H2O2-reductase activity was determined by measuring the NADH consumption after peroxide addition. Superoxide detoxification potential of Sor was detected colorimetrically using a xanthine/xanthine oxidase system with cytochrome c as analytical probe.

Results: Proposed roles of the investigated proteins in the detoxification pathways of ROS could partially be demonstrated. Specifically, Rbr and glutamate dehydrogenase synergistically detoxify H2O2, although with a very low turnover. Furthermore, Sor was shown to scavenge O2●- by superoxide dismutase activity and its activity compared to superoxide dismutase of Escherichia coli.

Conclusions: The investigated gene locus codes for an oxidative stress operon whose members have the potential to neutralize O2●- and H2O2 to water and thus complements the arsenal of ROS detoxifying mechanisms that are already known in C. difficile. However, full activity with adequate physiological electron transfer partners still needs to be demonstrated.

{"title":"A rubrerythrin locus of Clostridioides difficile encodes enzymes that efficiently detoxify reactive oxygen species.","authors":"Robert Knop, Simon Keweloh, Johanna Pukall, Silvia Dittmann, Daniela Zühlke, Susanne Sievers","doi":"10.1016/j.anaerobe.2025.102941","DOIUrl":"https://doi.org/10.1016/j.anaerobe.2025.102941","url":null,"abstract":"<p><strong>Objectives: </strong>The microaerophilic conditions in the large intestine and reactive oxygen species (ROS) produced by the immune system represent a challenge for the strictly anaerobic pathogen Clostridioides difficile, which protects itself by a variety of oxidative stress proteins. Four of these are encoded in an operon that has been implicated in the detoxification of H<sub>2</sub>O<sub>2</sub> and O<sub>2</sub><sup>●-</sup>. In this study, proteins of this operon, i. e. a rubrerythrin (Rbr), a superoxide reductase (Sor) and a putative glutamate dehydrogenase (CD630_08280) were investigated for their ROS detoxifying activity in vitro.</p><p><strong>Methods: </strong>Recombinant proteins were overexpressed in C. difficile and purified anaerobically by affinity chromatography. The H<sub>2</sub>O<sub>2</sub>-reductase activity was determined by measuring the NADH consumption after peroxide addition. Superoxide detoxification potential of Sor was detected colorimetrically using a xanthine/xanthine oxidase system with cytochrome c as analytical probe.</p><p><strong>Results: </strong>Proposed roles of the investigated proteins in the detoxification pathways of ROS could partially be demonstrated. Specifically, Rbr and glutamate dehydrogenase synergistically detoxify H<sub>2</sub>O<sub>2</sub>, although with a very low turnover. Furthermore, Sor was shown to scavenge O<sub>2</sub><sup>●-</sup> by superoxide dismutase activity and its activity compared to superoxide dismutase of Escherichia coli.</p><p><strong>Conclusions: </strong>The investigated gene locus codes for an oxidative stress operon whose members have the potential to neutralize O<sub>2</sub><sup>●-</sup> and H<sub>2</sub>O<sub>2</sub> to water and thus complements the arsenal of ROS detoxifying mechanisms that are already known in C. difficile. However, full activity with adequate physiological electron transfer partners still needs to be demonstrated.</p>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":" ","pages":"102941"},"PeriodicalIF":2.5,"publicationDate":"2025-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143078486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A rapid genome-proteome approach to identify rate-limiting steps in the butyrate production pathway in probiotic Clostridium butyricum, CBM588.
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2025-01-30 DOI: 10.1016/j.anaerobe.2025.102940
Liam Wood, Bunmi B Omorotionmwan, Adam M Blanchard, Adam Dowle, David Tooth, Tom S Bailey, Ruth Griffin

Objectives: Clostridium butyricum ferments non-digested dietary fibre in the colon to produce butyric acid. Butyrate is a four-carbon, short-chain fatty acid (SCFA) which has multiple health benefits. Many microbial products of pharmaceutical or industrial interest, such as butyrate, are produced in low quantities due to rate-limiting steps in their metabolic pathway, including low abundance or low activity of one or more enzymes in the pathway. By identifying the former, appropriate enzymes can be over-expressed to increase product yields, however, methods to determine these enzymes are laborious. To improve butyrate production in C. butyricum probiotic strain, CBM588, a novel rapid genome-proteome approach was deployed.

Methods: First, whole genome sequencing was performed and the 8 genes involved in butyrate production identified on the chromosome. Second, the relative abundance of these enzymes was investigated by liquid chromatography-mass spectrometry (LC-MS) analysis of total cytosolic proteins from early stationary phase cultures.

Results: Phosphotransbutyrylase (Ptb), butyrate kinase (Buk) and crotonase (Crt) were found to be the least abundant. Over-expression episomally of the corresponding genes individually or of the ptb-buk bicistron led to significant increases in butyrate titre per density of culture from 10 to 24 hours, compared to the wild type.

Conclusions: Our findings pave the way for over-expressing these genes chromosomally to generate a recombinant probiotic with improved butyrate production and potentially enhanced gut health properties.

{"title":"A rapid genome-proteome approach to identify rate-limiting steps in the butyrate production pathway in probiotic Clostridium butyricum, CBM588.","authors":"Liam Wood, Bunmi B Omorotionmwan, Adam M Blanchard, Adam Dowle, David Tooth, Tom S Bailey, Ruth Griffin","doi":"10.1016/j.anaerobe.2025.102940","DOIUrl":"https://doi.org/10.1016/j.anaerobe.2025.102940","url":null,"abstract":"<p><strong>Objectives: </strong>Clostridium butyricum ferments non-digested dietary fibre in the colon to produce butyric acid. Butyrate is a four-carbon, short-chain fatty acid (SCFA) which has multiple health benefits. Many microbial products of pharmaceutical or industrial interest, such as butyrate, are produced in low quantities due to rate-limiting steps in their metabolic pathway, including low abundance or low activity of one or more enzymes in the pathway. By identifying the former, appropriate enzymes can be over-expressed to increase product yields, however, methods to determine these enzymes are laborious. To improve butyrate production in C. butyricum probiotic strain, CBM588, a novel rapid genome-proteome approach was deployed.</p><p><strong>Methods: </strong>First, whole genome sequencing was performed and the 8 genes involved in butyrate production identified on the chromosome. Second, the relative abundance of these enzymes was investigated by liquid chromatography-mass spectrometry (LC-MS) analysis of total cytosolic proteins from early stationary phase cultures.</p><p><strong>Results: </strong>Phosphotransbutyrylase (Ptb), butyrate kinase (Buk) and crotonase (Crt) were found to be the least abundant. Over-expression episomally of the corresponding genes individually or of the ptb-buk bicistron led to significant increases in butyrate titre per density of culture from 10 to 24 hours, compared to the wild type.</p><p><strong>Conclusions: </strong>Our findings pave the way for over-expressing these genes chromosomally to generate a recombinant probiotic with improved butyrate production and potentially enhanced gut health properties.</p>","PeriodicalId":8050,"journal":{"name":"Anaerobe","volume":" ","pages":"102940"},"PeriodicalIF":2.5,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143073401","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fulminant Clostridioides (Costridium) difficile infection caused by a rare strain of PCR-ribotype 153 in Japan: A case report. 日本一株罕见pcr -核糖型153引起的暴发性艰难梭菌感染1例。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-12-21 DOI: 10.1016/j.anaerobe.2024.102936
Daichi Yomogida, Suguru Hasegawa, Shiori Mizuta, Shinjiro Horikawa, Yoshinao Koshida, Koichiro Matsuda, Masahiko Nakamura, Hiroyasu Kaya, Akio Uchiyama, Mitsutoshi Senoh

Clostridioides (Clostridium) difficile (C. difficile) infection (CDI), often severe when producing toxin A, toxin B, and CDT, can cause life-threatening fulminant infections, especially in vulnerable patients. This case report discusses a 39-year-old woman with no medical history who developed severe CDI after antibiotic treatment, leading to fatal hypovolemic shock. A rare C. difficile PCR-ribotype 153 strain which is positive for toxin A, toxin B, and CDT was identified. This case emphasizes the need for early CDI diagnosis, cautious antibiotic use, and prompt treatment to prevent severe outcomes like shock and multiorgan failure.

艰难梭菌感染(CDI),当产生毒素A,毒素B和CDT时,通常是严重的,可引起危及生命的暴发性感染,特别是在脆弱的患者中。本病例报告讨论了一名无病史的39岁女性,在抗生素治疗后发生严重CDI,导致致命的低血容量性休克。鉴定出一种罕见的难辨梭菌pcr -核糖型153菌株,毒素A,毒素B和CDT阳性。该病例强调了早期CDI诊断、谨慎使用抗生素和及时治疗的必要性,以防止休克和多器官衰竭等严重后果。
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引用次数: 0
Comparison of clinical characteristics, risk factors, and outcomes of patients infected with Bacteroides fragilis group at a tertiary care hospital in central China between 2017 and March 2024 2017年至2024年3月华中某三甲医院易碎杆菌组感染患者的临床特征、风险因素和预后比较。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-11-22 DOI: 10.1016/j.anaerobe.2024.102922
Yongmei Li , Jing Zhao , Qiong Ma , Junhong Xu , Youhua Yuan , Qi Zhang , Wenjuan Yan , Wenbo Xu , Zhiyu Yang , Gang Li , Lan Gao , Baoya Wang

Objectives

This study aimed to explore the epidemiology, clinical presentation, and risk factors for treatment failure in patients infected with various Bacteroides fragilis group (BFG) species.

Methods

We analyzed clinical and laboratory data from 178 patients infected with BFG who were admitted to our hospital between 2017 and 2024. We analyzed categorical data using Chi-square and Fisher exact tests, continuous variables using Student's t-tests or Mann–Whitney U-tests, and risk factors using multivariate logistic regression and Pearson's chi-squared tests.

Results

Bacteroides fragilis (69.7 %) and Bacteroides thetaiotaomicron (16.9 %) were the most prevalent species among 178 BFG isolates. Most patients had polymicrobial infections, with the following pathogens isolated from concurrent samples: Escherichia coli, Klebsiella spp., and Enterococcus spp. Intra-abdominal sites were most frequently infected with BFG. Patients aged >50 years and those who had intravascular catheters were infected with more other Bacteroides species than B. fragilis. Admission to an ICU, respiratory, renal and cardiovascular diseases, and chest drainage were associated more often with B. thetaiotaomicron than with B. fragilis. Gastrointestinal diseases, tracheal intubation, and ICU admission were associated more frequently with treatment failure in patients infected with B. fragilis whereas solid cancers, renal disease, multiple organ dysfunction syndrome, and tracheal intubation were more likely to be associated with treatment failure in patients infected with other Bacteroides spp.

Conclusions

The most prevalent BFG species in the patients were B. fragilis and B. thetaiotaomicron. The demographic characteristics of the patients, underlying diseases, and risk factors for poor clinical outcomes clearly differed among species.
研究目的本研究旨在探讨各种脆弱拟杆菌属(BFG)感染患者的流行病学、临床表现和治疗失败的风险因素:我们分析了2017年至2024年间本院收治的178名BFG感染者的临床和实验室数据。我们使用卡方检验(Chi-square)和费雪精确检验(Fisher exact)对分类数据进行分析,使用学生 t 检验或曼惠尼 U 检验对连续变量进行分析,使用多变量逻辑回归和皮尔逊卡方检验对风险因素进行分析:结果:在178个BFG分离株中,最常见的菌种是脆弱拟杆菌(69.7%)和泰奥米克隆拟杆菌(16.9%)。大多数患者有多微生物感染,同时从样本中分离出以下病原体:腹腔部位最常感染 BFG。年龄大于 50 岁的患者和使用血管内导管的患者感染的其他乳杆菌要多于脆弱拟杆菌。与脆弱拟杆菌相比,入住重症监护室、患有呼吸系统、肾脏和心血管疾病以及胸腔引流的患者更常感染泰氏菌。胃肠道疾病、气管插管和入住重症监护室与感染脆弱拟杆菌的患者治疗失败的相关性更高,而实体瘤、肾脏疾病、多器官功能障碍综合征和气管插管与感染其他乳杆菌属的患者治疗失败的相关性更高:结论:患者中最常见的乳糜泻菌为脆弱拟杆菌(B. fragilis)和大肠杆菌(B. thetaiotaomicron)。不同菌种的患者人口统计学特征、基础疾病和临床疗效不佳的风险因素明显不同。
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引用次数: 0
Dogs in Rio de Janeiro as reservoirs of Clostridioides difficile ribotypes causing CDI in humans 里约热内卢的狗是导致人类 CDI 的艰难梭状芽孢杆菌核糖型的储存库。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-10-10 DOI: 10.1016/j.anaerobe.2024.102917
Júlia Meireles , Renata F.F. Moraes , Débora Lins , Thaís da Silveira Oliveira , Eduardo Butturini de Carvalho , Kelly Rainha , Eliane de O. Ferreira

Introduction

In the past decade, the incidence of community-acquired Clostridioides difficile infection (CA-CDI) has increased, suggesting a role for community reservoirs such as animals in its spread.

Objective

This study aimed to isolate and characterize C. difficile strains from domestic dogs at veterinary clinics to enhance our understanding of C. difficile epidemiology in Rio de Janeiro.

Material and methods

For this study 90 stool samples from dogs were collected and cultured in a selective medium (Clostridioides difficile Brucella agar – CDBA) for isolation. Species were identified by MALDI-TOF MS, with confirmation provided by PCR targeting the tpi gene. The antibiotic susceptibility test of the strains was performed using five antibiotics: vancomycin, metronidazole, moxifloxacin, rifampicin, and erythromycin. Strains resistant to metronidazole were further analyzed for the presence of the plasmid pCD-METRO using PCR. The presence of toxin genes (tcdA, tcdB, and cdtB) was investigated, alongside ribotyping and tcdC sequencing analyses. The strains were also tested for biofilm formation and motility.

Results

C. difficile was isolated in 15.5 % (14/90) of the samples. Among the strains analyzed, 87.71 % (12/14) tested positive for both toxin genes tcdA and tcdB and belonged to ribotypes 106 (10/14) and 014/020 (2/14). The remaining 14.3 % (2/14) were non-toxigenic and were identified as ribotype 010. Regarding the antibiotic profile, 42.85 % (6/14) of the strains exhibited resistance to at least one antibiotic, including vancomycin (1/14) and metronidazole (1/14). The metronidazole-resistant strain was also positive for the plasmid pCD-METRO. All strains exhibited both biofilm formation and motility. Among the 12 toxigenic strains sequenced for the tcdC gene, two exhibited a deletion in the same region as the epidemic strain, NAP1 (RT027).

Conclusion

Our study found some overlap between C. difficile ribotypes isolated from dogs and from cases of CDI in humans, and the C. difficile prevalence was higher in dogs with diarrhea (p = 0.034).
简介:在过去十年中,社区获得性艰难梭菌感染(CA-CDI)的发病率有所上升,这表明动物物种在其传播中扮演了重要角色:在过去十年中,社区获得性艰难梭菌感染(CA-CDI)的发病率有所上升,这表明动物物种在艰难梭菌感染的传播中扮演了重要角色:本研究旨在从兽医诊所的家犬中分离艰难梭菌菌株并确定其特征,以加深我们对里约热内卢艰难梭菌流行病学的了解:本研究收集了 90 份犬粪便样本,并在选择性培养基(艰难梭菌布鲁氏菌琼脂 - CDBA)中进行分离培养。通过 MALDI-TOF MS 鉴定菌种,并通过针对 tpi 基因的 PCR 进行确认。使用万古霉素、甲硝唑、莫西沙星、利福平和红霉素五种抗生素对菌株进行抗生素敏感性测试。利用 PCR 技术进一步分析了对甲硝唑耐药的菌株是否存在质粒 pCD-METRO。在进行核糖分型和 tcdC 测序分析的同时,还调查了毒素基因(tcdA、tcdB 和 cdtB)的存在情况。此外,还对菌株的生物膜形成和运动能力进行了检测:结果:15.5%(14/90)的样本中分离出艰难梭菌。在分析的菌株中,87.71%(12/14)的毒素基因 A 和 B 均呈阳性,属于核型 106(10/14)和 014/020 (2/14)。其余 14.3%(2/14)无毒性,被鉴定为 RT010。在抗生素谱方面,42.85%(6/14)的菌株对至少一种抗生素表现出耐药性,包括万古霉素(1/14)和甲硝唑(1/14)。耐甲硝唑菌株的质粒 pCD-METRO 也呈阳性。所有菌株都有生物膜形成和运动能力。在对 tcdC 基因进行测序的 10 株致毒菌株中,有两株与流行菌株 NAP1(RT027)在同一区域出现缺失:我们的研究发现,从狗身上分离出的大多数艰难梭菌核型都与人类的 CDI 病例有关,而且在腹泻的狗中发病率更高(p = 0.034)。虽然我们无法证实这些狗的腹泻完全是由艰难梭菌引起的,但它们的定植可能是人类艰难梭菌感染的常见传播途径。
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引用次数: 0
Fructo-oligosaccharides promote butyrate production over citrus pectin during in vitro fermentation by colonic inoculum from pig 在猪结肠接种物体外发酵过程中,果寡糖比柑橘果胶更能促进丁酸盐的产生。
IF 2.5 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-10-09 DOI: 10.1016/j.anaerobe.2024.102919
Yanan Zhang , Chunlong Mu , Kaifan Yu , Yong Su , Erwin G. Zoetendal , Weiyun Zhu

Objectives

Fructo-oligosaccharide (FOS) and citrus pectin (CP) are soluble fibers with different chemical composition. However, their fermentation pattern in large intestine remains unclear.

Methods

An in vitro batch fermentation using colonic digesta from pigs as inoculum was employed to investigate the fermentation dynamics of FOS and CP. The monosaccharides and SCFAs contents were assayed by high-performance liquid chromatography and gas chromatography, respectively. And the microbiota community was assessed by 16S rRNA gene high-throughput sequencing.

Results

Both FOS and CP were degarded after 6 h, especially to a neglected level in FOS. FOS group showed higher abundances of butyrate-producing bacteria such as Eubacterium rectale, Roseburia faecis and Coprococcus comes and butyrate compared to CP. CP stimulated the growth of pectinolytic microbes Lachnospira pectinoschiza, succinate-producing bacteria Succinivibrio dextrinosolvens, succinate-utilizing bacteria Phascolarctobacterium succinatutens and the production of acetate and propionate compared to FOS. Moreover, the relative abundances of key enzymes (e.g. butyrate kinase) involving in butyrate formation via the butyrate kinase route were upregulated in the FOS group. And the key enzymes (e.g. acetyl-CoA synthetase) associated with propionate production through the succinate pathway were upregulated in the CP group.

Conclusions

FOS was preferred to ferment by butyrate-producing bacteria to yield a higher level of butyrate via the butyrate kinase pathway, while CP enhanced the cross-feeding of succinate-producing and succinate-utilizing bacteria to form propionate through the succinate pathway. These findings deepen our understanding on the fermentation characteristics of the soluble fibers, and also provide guidelines for fiber choice in precisely modulating the microbial composition and metabolism in large intestine.
目的:果寡糖(FOS)和柑橘果胶(CP)是具有不同化学成分的可溶性纤维。然而,它们在大肠中的发酵模式仍不清楚:方法:以猪的结肠消化液为接种物进行体外批量发酵,研究 FOS 和 CP 的发酵动态。高效液相色谱法和气相色谱法分别测定了单糖和 SCFAs 的含量。结果表明,FOS 和 CP 的单糖和 SCFAs 含量均有所下降:结果:6 小时后,两种底物中的单糖含量都有所下降,尤其是 FOS 中的单糖含量更低。与 CP 相比,FOS 表现出更高的丁酸菌(如直肠杆菌、粪蔷薇杆菌和来丁酸 Coprococcus)和丁酸盐的丰度。与 FOS 相比,CP 能刺激果胶溶解微生物 Lachnospira pectinoschiza、琥珀酸产生菌 Succinivibrio dextrinosolvens、琥珀酸利用菌 Phascolarctobacterium succinatutens 的生长,并促进乙酸盐和丙酸盐的产生。此外,通过丁酸激酶途径参与丁酸形成的关键酶(如丁酸激酶)的相对丰度在 FOS 组有所提高。而与通过琥珀酸途径产生丙酸盐有关的关键酶(如乙酰-CoA合成酶)在 CP 组中的相对丰度上调:结论:生产丁酸的细菌更喜欢 FOS 发酵,以通过丁酸激酶途径产生更高水平的丁酸,而 CP 则增强了生产琥珀酸的细菌和利用琥珀酸的细菌的交叉摄食,以通过琥珀酸途径形成丙酸。这些发现加深了我们对可溶性纤维发酵特性的理解,也为选择纤维以精确调节大肠微生物组成和代谢提供了指导。
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