Pub Date : 2026-01-30DOI: 10.1007/s13313-026-01113-1
M. A. Jackson, D. B. Kidanemariam, G. A. Chambers, A. Englezou, A. D.W. Geering, N. J. Donovan
Citrus tristeza virus (CTV; species Closterovirus tristezae) is ubiquitous in Australia, occurring in all production areas. Stem-pitting disease in white grapefruit varieties caused by CTV is managed by mild strain cross-protection. However, the protective isolate of CTV used for cross-protection, labelled PB61, is not fully characterised at the molecular level, even though most grapefruit budwood is inoculated with this virus isolate before release. In this study, we employed high throughput sequencing to assemble the 19,254 nucleotide-long genome of virus isolate PB61. Phylogenetic analysis revealed that PB61 belongs to the resistance-breaking (RB) genotype group first identified in New Zealand. PB61 is the first CTV isolate of any genotype from Australia to be sequenced in entirety, and the generation of this data provides a foundation for better understanding the mechanism of cross-protection in grapefruit.
{"title":"Complete genome sequence of citrus tristeza virus isolate PB61, a commercially deployed mild strain for cross-protection in grapefruit","authors":"M. A. Jackson, D. B. Kidanemariam, G. A. Chambers, A. Englezou, A. D.W. Geering, N. J. Donovan","doi":"10.1007/s13313-026-01113-1","DOIUrl":"10.1007/s13313-026-01113-1","url":null,"abstract":"<div><p>Citrus tristeza virus (CTV; species <i>Closterovirus tristezae</i>) is ubiquitous in Australia, occurring in all production areas. Stem-pitting disease in white grapefruit varieties caused by CTV is managed by mild strain cross-protection. However, the protective isolate of CTV used for cross-protection, labelled PB61, is not fully characterised at the molecular level, even though most grapefruit budwood is inoculated with this virus isolate before release. In this study, we employed high throughput sequencing to assemble the 19,254 nucleotide-long genome of virus isolate PB61. Phylogenetic analysis revealed that PB61 belongs to the resistance-breaking (RB) genotype group first identified in New Zealand. PB61 is the first CTV isolate of any genotype from Australia to be sequenced in entirety, and the generation of this data provides a foundation for better understanding the mechanism of cross-protection in grapefruit.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"55 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s13313-026-01113-1.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146083037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-29DOI: 10.1007/s13313-026-01118-w
Raj K. Mishra, Sonika Pandey, Abhishek Tiwari, Abhishek Bohra
A blighted-like symptom on wild pigeonpea (C. scarabaeoides) was observed during 2023-24 at ICAR-Indian Institute of Pulses Research (IIPR), Kanpur, India. Alterneria blight-infected wild pigeonpea leaf and stem samples were collected from the infected wild pigeonpea accession C. scarabaeoides to isolate, identify, and characterize the pathogen causing a huge loss. Pathogenicity confirmed on cultivar C. scarabaeoides to confirm the aggressiveness of the pathogen. Further, molecular characterization was done by using the internal transcribed spacer (ITS) region. The phylogenetic tree based on rDNA ITS analysis showed that the Alternaria alternata causing Alternaria blight in wild pigeonpea (C. scarabaeoides) is very distinct from the other Alternaria isolate reported from different hosts. On the basis of available literature, this is the first report of molecular identification of Alternaria alternata causing Alternaria blight in wild pigeonpea (C. scarabaeoides) from India.
{"title":"First report of Alterneria alternata causing leaf blight disease on wild derivatives of pigeon pea (C. scarabaeoides) from India","authors":"Raj K. Mishra, Sonika Pandey, Abhishek Tiwari, Abhishek Bohra","doi":"10.1007/s13313-026-01118-w","DOIUrl":"10.1007/s13313-026-01118-w","url":null,"abstract":"<p>A blighted-like symptom on wild pigeonpea (<i>C. scarabaeoides</i>) was observed during 2023-24 at ICAR-Indian Institute of Pulses Research (IIPR), Kanpur, India. Alterneria blight-infected wild pigeonpea leaf and stem samples were collected from the infected wild pigeonpea accession <i>C. scarabaeoides</i> to isolate, identify, and characterize the pathogen causing a huge loss. Pathogenicity confirmed on cultivar <i>C. scarabaeoides </i> to confirm the aggressiveness of the pathogen. Further, molecular characterization was done by using the internal transcribed spacer (ITS) region. The phylogenetic tree based on rDNA ITS analysis showed that the <i>Alternaria alternata</i> causing Alternaria blight in wild pigeonpea (<i>C. scarabaeoides)</i> is very distinct from the other Alternaria isolate reported from different hosts. On the basis of available literature, this is the first report of molecular identification of <i>Alternaria alternata</i> causing Alternaria blight in wild pigeonpea (<i>C. scarabaeoides)</i> from India.</p>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"55 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146082671","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-29DOI: 10.1007/s13313-026-01085-2
Ramanand Yadav, Amritesh Chandra Shukla
The rhizome rot disease of turmeric (Curcuma longa L.) was observed during the survey (August to January, 2022) at the farmer’s field (26.9582 N, 81.2999 E"), Barabanki, UP, India. The isolated fungus was identified as Fusarium proliferatum based on morphological characteristics and molecular markers, including two genetic regions (ITS and beta tubulin) and phylogenetic studies. After that, a pathogenicity test was conducted to fulfil Koch’s postulates, confirming it as a causal agent of rhizome rot disease of turmeric. In light of the significant impact on the crops' yield and quality of turmeric, this report identifies F. proliferatum as a significant contributor to the turmeric rhizome rot complex, highlighting the need for revised management strategies targeting this specific pathogen to mitigate significant yield losses in the particular agro-climatic region of India.
本文于2022年8月至1月在印度北方邦巴拉班基(Barabanki)农民田间(26.9582 N, 81.2999 E”)观察到姜黄根茎腐病的发生。基于形态学特征和分子标记,包括ITS和β微管蛋白两个遗传区,以及系统发育研究,鉴定该分离真菌为增殖镰刀菌(Fusarium proliferatum)。随后进行了致病性试验,证实其为姜黄根腐病的致病因子,符合Koch的假设。鉴于对姜黄作物产量和质量的重大影响,本报告确定增殖镰刀菌是姜黄根茎腐病的重要贡献者,强调需要修订针对这一特定病原体的管理战略,以减轻印度特定农业气候区域的重大产量损失。
{"title":"First report of Fusarium proliferatum causing rhizome rot disease of turmeric (Curcuma longa L.) in Uttar Pradesh, India","authors":"Ramanand Yadav, Amritesh Chandra Shukla","doi":"10.1007/s13313-026-01085-2","DOIUrl":"10.1007/s13313-026-01085-2","url":null,"abstract":"<p>The rhizome rot disease of turmeric (<i>Curcuma longa</i> L.) was observed during the survey (August to January, 2022) at the farmer’s field (26.9582 N, 81.2999 E\"), Barabanki, UP, India. The isolated fungus was identified as <i>Fusarium proliferatum</i> based on morphological characteristics and molecular markers, including two genetic regions (ITS and beta tubulin) and phylogenetic studies. After that, a pathogenicity test was conducted to fulfil Koch’s postulates, confirming it as a causal agent of rhizome rot disease of turmeric. In light of the significant impact on the crops' yield and quality of turmeric, this report identifies <i>F. proliferatum</i> as a significant contributor to the turmeric rhizome rot complex, highlighting the need for revised management strategies targeting this specific pathogen to mitigate significant yield losses in the particular agro-climatic region of India.</p>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"55 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146082672","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}