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Complete genome sequence of citrus tristeza virus isolate PB61, a commercially deployed mild strain for cross-protection in grapefruit 柑桔tristeza病毒分离株PB61的全基因组序列分析
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-30 DOI: 10.1007/s13313-026-01113-1
M. A. Jackson, D. B. Kidanemariam, G. A. Chambers, A. Englezou, A. D.W. Geering, N. J. Donovan

Citrus tristeza virus (CTV; species Closterovirus tristezae) is ubiquitous in Australia, occurring in all production areas. Stem-pitting disease in white grapefruit varieties caused by CTV is managed by mild strain cross-protection. However, the protective isolate of CTV used for cross-protection, labelled PB61, is not fully characterised at the molecular level, even though most grapefruit budwood is inoculated with this virus isolate before release. In this study, we employed high throughput sequencing to assemble the 19,254 nucleotide-long genome of virus isolate PB61. Phylogenetic analysis revealed that PB61 belongs to the resistance-breaking (RB) genotype group first identified in New Zealand. PB61 is the first CTV isolate of any genotype from Australia to be sequenced in entirety, and the generation of this data provides a foundation for better understanding the mechanism of cross-protection in grapefruit.

柑橘tristeza病毒(CTV;种clostervirus tristezae)在澳大利亚普遍存在,发生在所有生产区域。采用轻度毒株交叉保护的方法防治CTV引起的白葡萄柚茎蚀病。然而,用于交叉保护的CTV的保护性分离物,标记为PB61,在分子水平上没有完全特征,即使大多数葡萄柚芽木在释放前接种了该病毒分离物。在这项研究中,我们采用高通量测序方法组装了病毒分离物PB61的19,254个核苷酸长的基因组。系统发育分析表明,PB61属于在新西兰首次发现的抗性突破(RB)基因型。PB61是首个获得完整测序的澳大利亚CTV分离物,该数据的生成为进一步了解葡萄柚交叉保护机制提供了基础。
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引用次数: 0
First report of Alterneria alternata causing leaf blight disease on wild derivatives of pigeon pea (C. scarabaeoides) from India 印度野鸽豆(C. scarabaeoides)叶枯病的互交霉属首次报道
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-29 DOI: 10.1007/s13313-026-01118-w
Raj K. Mishra, Sonika Pandey, Abhishek Tiwari, Abhishek Bohra

A blighted-like symptom on wild pigeonpea (C. scarabaeoides) was observed during 2023-24 at ICAR-Indian Institute of Pulses Research (IIPR), Kanpur, India. Alterneria blight-infected wild pigeonpea leaf and stem samples were collected from the infected wild pigeonpea accession C. scarabaeoides to isolate, identify, and characterize the pathogen causing a huge loss. Pathogenicity confirmed on cultivar C. scarabaeoides to confirm the aggressiveness of the pathogen. Further, molecular characterization was done by using the internal transcribed spacer (ITS) region. The phylogenetic tree based on rDNA ITS analysis showed that the Alternaria alternata causing Alternaria blight in wild pigeonpea (C. scarabaeoides) is very distinct from the other Alternaria isolate reported from different hosts. On the basis of available literature, this is the first report of molecular identification of Alternaria alternata causing Alternaria blight in wild pigeonpea (C. scarabaeoides) from India.

在印度坎普尔的icar -印度豆类研究所(IIPR)观察到2023- 2024年间野生鸽子豌豆(C. scarabaeoides)出现了一种类似枯萎病的症状。采集白叶枯病菌(Alterneria blight)侵染野鸽豌豆的叶、茎标本,分离、鉴定和鉴定这种损失巨大的病原菌。对金甲金龟品种的致病性进行了鉴定,证实了该病菌的侵袭性。此外,利用内部转录间隔区(ITS)进行了分子表征。基于rDNA ITS分析的系统发育树显示,引起野鸽豆疫病的稻瘟菌与来自不同寄主的稻瘟菌分离株有明显的差异。在现有文献的基础上,本文首次报道了在印度野鸽豌豆(C. scarabaeoides)中引起褐花病菌的分子鉴定。
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引用次数: 0
First report of Fusarium proliferatum causing rhizome rot disease of turmeric (Curcuma longa L.) in Uttar Pradesh, India 在印度北方邦发现引起姜黄根茎腐病的增生镰刀菌首次报道
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-29 DOI: 10.1007/s13313-026-01085-2
Ramanand Yadav, Amritesh Chandra Shukla

The rhizome rot disease of turmeric (Curcuma longa L.) was observed during the survey (August to January, 2022) at the farmer’s field (26.9582 N, 81.2999 E"), Barabanki, UP, India. The isolated fungus was identified as Fusarium proliferatum based on morphological characteristics and molecular markers, including two genetic regions (ITS and beta tubulin) and phylogenetic studies. After that, a pathogenicity test was conducted to fulfil Koch’s postulates, confirming it as a causal agent of rhizome rot disease of turmeric. In light of the significant impact on the crops' yield and quality of turmeric, this report identifies F. proliferatum as a significant contributor to the turmeric rhizome rot complex, highlighting the need for revised management strategies targeting this specific pathogen to mitigate significant yield losses in the particular agro-climatic region of India.

本文于2022年8月至1月在印度北方邦巴拉班基(Barabanki)农民田间(26.9582 N, 81.2999 E”)观察到姜黄根茎腐病的发生。基于形态学特征和分子标记,包括ITS和β微管蛋白两个遗传区,以及系统发育研究,鉴定该分离真菌为增殖镰刀菌(Fusarium proliferatum)。随后进行了致病性试验,证实其为姜黄根腐病的致病因子,符合Koch的假设。鉴于对姜黄作物产量和质量的重大影响,本报告确定增殖镰刀菌是姜黄根茎腐病的重要贡献者,强调需要修订针对这一特定病原体的管理战略,以减轻印度特定农业气候区域的重大产量损失。
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引用次数: 0
New insights into Exserohilum rostratum: a rising cause of black spot disease in coconut (Cocos nucifera L.) 对椰子黑斑病的新认识(Cocos nucifera L.)
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-29 DOI: 10.1007/s13313-026-01097-y
Daliyamol, Prathibha Veerappa Hanumanthappa, Kamal Kumar, Samsudeen Kukkamgai, Arun S. Kumar, Sabana Abdulla Abdulla, Vinayaka Hegde

During late 2020, tiny black spots were noticed (initially restricted to petiole part and later seen on leaves as well as young nuts) in WCT palms in coconut farm maintained at ICAR-CPCRI Research Centre Kidu, Karnataka. The tiny black spots later coalesce to form dark lesions with grey centre leading to drying of the entire infected coconut leaf. The disease later reemerged in the Kasaragod region of Kerala between 2022 and 2024, with a 68% incidence rate. A series of cultural, morphological, molecular characterization using multi-gene phylogeny, and pathogenicity assays with Koch’s postulates confirmed the association of Exserohilum rostratum as the causal organism of black spot disease. E. rostratum is known to be one among the causal agents responsible for leaf rot disease of coconut especially in Root (wilt) affected areas. To the best of our knowledge, this is the first confirmed report of Exserohilum rostratum as the primary causal agent of black spot disease in coconut. Given the pathogen’s broad host range and global distribution, its emergence as a distinct and independent coconut pathogen represents a potential transboundary risk to other coconut-growing regions. These findings highlight the evolving pathogenic potential of E. rostratum and underscore the need for international vigilance and integrated management strategies to safeguard coconut cultivation worldwide. Spraying with Hexaconazole 0.2% effectively controlled the disease under in vivo conditions, resulting in near-complete symptom reduction.

在2020年底,在卡纳塔克邦ICAR-CPCRI研究中心Kidu维护的椰子农场的WCT棕榈树中发现了小黑点(最初仅限于叶柄部分,后来在叶子和年轻的坚果上看到)。这些小黑点后来合并形成深色病变,中心呈灰色,导致整个受感染的椰子叶变干。该疾病后来在2022年至2024年期间在喀拉拉邦的卡萨拉戈德地区再次出现,发病率为68%。利用多基因系统发育和科赫假设进行的一系列培养、形态学、分子特征和致病性分析证实,rostratum Exserohilum rostratum是黑斑病的致病生物。众所周知,叶腐菌是引起椰子叶腐病的病原之一,特别是在根(枯萎)疫区。据我们所知,这是首次证实椰子黑斑病的主要致病因子是rostratum exserhilum rostratum。鉴于该病原体的广泛宿主范围和全球分布,它作为一种独特和独立的椰子病原体的出现对其他椰子种植区构成了潜在的跨界风险。这些发现强调了rostratum不断发展的致病潜力,并强调了国际警惕和综合管理策略的必要性,以保护世界范围内的椰子种植。在体内条件下,喷施0.2%的六康唑有效地控制了该病,症状几乎完全减轻。
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引用次数: 0
Synergistic efficacy of Azadirachta indica and biocontrol agents in mitigating Meloidogyne javanica infection in peach 印楝与生物防治剂协同防治桃黑僵菌病的效果研究
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-29 DOI: 10.1007/s13313-026-01104-2
Muhammad Saeed, Tariq Mukhtar, Raees Ahmed, Umair Mehmood, Muhammad Aamir Iqbal

The 2022present study was conducted to evaluate the effectiveness of the combined application of Azadirachta indica (neem) and biocontrol agents against Meloidogyne javanica on peach. The results demonstrated that the combination of A. indica with Pochonia chlamydosporia remained superior by recording the lowest number of root galls, followed closely by Purpureocillium lilacinum, which was statistically at par with the chemical control (Rugby), showing gall reductions by 72.54%, 67.88%, and 75.65% over the control, respectively. Conversely, Trichoderma viride and T. harzianum were the least effective in reducing gall formation. The application of A. indica with biocontrol agents, especially P. chlamydosporia and P. lilacinum, also led to significant reductions in the number of egg masses. Moreover, the number of eggs per egg mass significantly decreased in these integrated treatments, with P. chlamydosporia recording the fewest eggs per egg mass, comparable to the Rugby treatment, while T. viride resulted in the highest fecundity. The overall nematode population was markedly reduced across all treatments (P < 0.05), with P. chlamydosporia causing the greatest suppression, followed by P. lilacinum. This study highlights the potential of A. indica in synergy with specific biocontrol agents, particularly P. chlamydosporia and P. lilacinum, for managing M. javanica in peach.

研究了印楝与生物防治剂联合施用对桃源土虱的防治效果。结果表明,籼稻与衣孢Pochonia chlamydosporia组合处理的根瘿数最少,其次是紫紫色紫霉(Purpureocillium lilacinum),与化学对照(Rugby)相比,其根瘿数分别减少了72.54%、67.88%和75.65%。相反,绿木霉和哈兹霉在减少胆汁形成方面效果最差。与生物防治剂,特别是衣孢假单胞菌和淡紫色假单胞菌一起施用,也显著减少了印度拟南棉铃虫的卵团数。此外,在这些综合处理中,每卵块的卵数显著降低,衣孢单胞菌每卵块的卵数最少,与Rugby处理相当,而绿孢单胞菌的繁殖力最高。线虫总体数量在所有处理中均显著减少(P < 0.05),衣孢假单胞菌的抑制作用最大,其次是淡紫色假单胞菌。本研究强调了籼稻单胞杆菌与特定生物防治剂协同作用的潜力,特别是衣孢单胞菌和淡紫色单胞菌,在桃子的javanica管理。
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引用次数: 0
First report of Scleroramularia abundans and S. henanensis causing flyspeck on kiwiberry (Actinidia sp.) in New Zealand 在新西兰猕猴桃(猕猴桃猕猴桃)上引起蝇斑病的核孢菌和河南s.h anensis首次报道
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-28 DOI: 10.1007/s13313-026-01103-3
Joy Lorraine Tyson, Kieran David Mellow, Anju Sunil Keenan, Jeyaseelan Baskarathevan

Flyspeck caused by Scleroramularia abundans and S. henanensis is reported on Actinidia sp. in New Zealand for the first time. Symptoms consisted of superficial specks on the surface of the fruit skin. The fungi were isolated and identified using ITS and Tef-1α sequencing. Modified Koch’s Postulates confirmed that these species were the cause of the observed symptoms. This is a new record of S. abundans and S. henanensis in New Zealand, and a new host association worldwide.

本文首次报道了新西兰猕猴桃属(Actinidia sp.)上由scloramularia prolifans和S. henanensis引起的蝇斑。症状包括果皮表面的表面斑点。利用ITS和Tef-1α测序对真菌进行分离鉴定。修正的科赫假设证实了这些物种是造成观察到的症状的原因。这是S. abundance和S. henanensis在新西兰的新记录,也是世界范围内一个新的寄主联系群。
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引用次数: 0
First report of 'Candidatus Phytoplasma citri'-related strain (16srII-C subgroup) associated with little leaf and witches’-broom disease of sunn hemp (Crotalaria juncea) in India 印度麻(Crotalaria juncea)小叶和女巫帚病相关菌株(16srII-C亚群)的首次报道
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-28 DOI: 10.1007/s13313-026-01081-6
Shobhit Maheshwari, Akshita Soni, Ram Prasad Kushvaha, Sunil Kumar Snehi
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引用次数: 0
First report of alfalfa mosaic virus causing calico and mild chlorotic mosaic on peperina (Minthostachys verticillata) in Argentina 阿根廷首次报道苜蓿花叶病毒引起胡椒花叶花和轻度褪绿花叶病
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-28 DOI: 10.1007/s13313-026-01091-4
Verónica Trucco, Franco Gutiérrez, Edgardo Carloni, Franco Fernandez, Onias Castellanos Collazo, Dariel Cabrera Mederos, Fabián Giolitti
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引用次数: 0
First report of leaf blight in finger millet (Eleusine Coracana L.) caused by Fusarium Fujikuroi in India 在印度报道由藤黑镰刀菌引起的谷子叶枯萎病的首例报道
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-28 DOI: 10.1007/s13313-026-01077-2
Geetika Kalita, Highland Kayang

Fusarium species causes diseases of a diverse plant species. Though finger millets are resistance to a wide range of pathogens, sometimes, they are also attacked by various phytopathogens. During a survey in September, 2023, a serious leaf blight disease of finger millet (Eleusine coracana L.) was observed at agricultural fields of Morigaon district of Assam, India. The infected plant parts were collected from Morigaon district of Assam, during vegetative phase of the crop. The leaves displayed elliptical spots with grayish-white in centers and brown to reddish-brown margins. In severe cases, the affected leaves turned gray, the foliage withered, and the plants ultimately died. The pathogen was identified as Fusarium fujikuroi by morphological characteristics, pathogenicity test, molecular characteristics and phylogenetic analysis. This study reviles the first report of leaf blight in finger millet (Eleusine coracana L.).

镰刀菌引起多种植物的疾病。虽然小米对多种病原菌具有抗性,但有时也会受到各种植物病原菌的攻击。在2023年9月的一次调查中,在印度阿萨姆邦Morigaon地区的农田中发现了一种严重的指粟叶枯病。受感染的植物部分是在作物的营养阶段从阿萨姆邦的Morigaon地区收集的。叶子呈椭圆形斑点,中心呈灰白色,边缘呈棕色至红褐色。在严重的情况下,受影响的叶子变成灰色,叶子枯萎,植物最终死亡。通过形态特征、致病性试验、分子特征和系统发育分析,鉴定该病原菌为藤黑镰刀菌。本文报道了小谷子(Eleusine coracana L.)叶枯病的首次报道。
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引用次数: 0
Duplex PCR for the detection of the morphologically indistinguishable Berkeleyomyces rouxiae and Berkeleyomyces basicola from cotton in Australia 采用双链聚合酶链反应(PCR)检测澳大利亚棉花中形态难以区分的rouxiae和basicola贝克莱酵母
IF 1.1 4区 农林科学 Q4 PLANT SCIENCES Pub Date : 2026-01-23 DOI: 10.1007/s13313-026-01096-z
Chi P. T. Nguyen, Andrew Chen, Duy P. Le

Berkeleyomyces rouxiae is a highly destructive soil borne fungal pathogen causing a pandemic black root rot (BRR) disease of cotton seedlings in New South Wales, Australia. Accurate identification and differentiation of B. rouxiae from its morphological twin, B. basicola was solely based on DNA sequence analyses. In this study, we for the first time developed a duplex PCR assay for simultaneous detection and identification of B. rouxiae and B. basicola without the need for sequencing. Based on nucleotide variation in the MCM7 fragment, a new primer was designed to pair with the one developed by Nakane and Usami (2020) to specifically amplify a 159 bp amplicon of B. basicola. Subsequently, a duplex PCR assay was developed to simultaneously detect the two pathogens at a limit of an approximately 0.05 ng/µL. The duplex PCR was sensitive enough to detect B. rouxiae from crude extracts prepared from a 5-min-microwave-based DNA extraction protocol. Additionally, when used together with a nested PCR, the duplex PCR assay successfully detected the BRR pathogen in DNA extracts obtained directly from a small amount (15–30 mg) of diseased cotton tissue. This duplex PCR provides valuable diagnostic tool for detecting and monitoring the prevalence and distribution of BRR pathogens in cotton in Australia.

rouxie贝克莱酵母菌(berkelyomyces rouxiae)是一种极具破坏性的土传真菌病原体,在澳大利亚新南威尔士州引起棉花幼苗大流行黑根腐病(BRR)。仅通过DNA序列分析就能准确地识别和区分rouxib .与其形态孪生体basicola .。在本研究中,我们首次建立了一种双链PCR方法,无需测序即可同时检测和鉴定rouxiae和basicola。根据MCM7片段的核苷酸变化,设计了一个新的引物与Nakane和Usami(2020)开发的引物配对,特异性扩增basicola的159 bp扩增子。随后,建立了双链PCR法,以约0.05 ng/µL的限同时检测两种病原体。双链PCR对5 min微波DNA提取工艺制备的粗提物具有足够的灵敏度。此外,当与巢式PCR一起使用时,双链PCR试验成功地检测了从少量(15-30 mg)患病棉花组织中直接获得的DNA提取物中的BRR病原体。该方法为检测和监测澳大利亚棉花BRR病原菌的流行和分布提供了有价值的诊断工具。
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引用次数: 0
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Australasian Plant Pathology
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