Pub Date : 2026-01-28DOI: 10.1007/s13313-026-01077-2
Geetika Kalita, Highland Kayang
Fusarium species causes diseases of a diverse plant species. Though finger millets are resistance to a wide range of pathogens, sometimes, they are also attacked by various phytopathogens. During a survey in September, 2023, a serious leaf blight disease of finger millet (Eleusine coracana L.) was observed at agricultural fields of Morigaon district of Assam, India. The infected plant parts were collected from Morigaon district of Assam, during vegetative phase of the crop. The leaves displayed elliptical spots with grayish-white in centers and brown to reddish-brown margins. In severe cases, the affected leaves turned gray, the foliage withered, and the plants ultimately died. The pathogen was identified as Fusarium fujikuroi by morphological characteristics, pathogenicity test, molecular characteristics and phylogenetic analysis. This study reviles the first report of leaf blight in finger millet (Eleusine coracana L.).
{"title":"First report of leaf blight in finger millet (Eleusine Coracana L.) caused by Fusarium Fujikuroi in India","authors":"Geetika Kalita, Highland Kayang","doi":"10.1007/s13313-026-01077-2","DOIUrl":"10.1007/s13313-026-01077-2","url":null,"abstract":"<div><p>Fusarium species causes diseases of a diverse plant species. Though finger millets are resistance to a wide range of pathogens, sometimes, they are also attacked by various phytopathogens. During a survey in September, 2023, a serious leaf blight disease of finger millet (<i>Eleusine coracana </i>L.) was observed at agricultural fields of Morigaon district of Assam, India. The infected plant parts were collected from Morigaon district of Assam, during vegetative phase of the crop. The leaves displayed elliptical spots with grayish-white in centers and brown to reddish-brown margins. In severe cases, the affected leaves turned gray, the foliage withered, and the plants ultimately died. The pathogen was identified as <i>Fusarium fujikuroi </i>by morphological characteristics, pathogenicity test, molecular characteristics and phylogenetic analysis. This study reviles the first report of leaf blight in finger millet (<b><i>Eleusine coracana</i></b> L.).</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"55 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2026-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146082719","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-23DOI: 10.1007/s13313-026-01096-z
Chi P. T. Nguyen, Andrew Chen, Duy P. Le
Berkeleyomyces rouxiae is a highly destructive soil borne fungal pathogen causing a pandemic black root rot (BRR) disease of cotton seedlings in New South Wales, Australia. Accurate identification and differentiation of B. rouxiae from its morphological twin, B. basicola was solely based on DNA sequence analyses. In this study, we for the first time developed a duplex PCR assay for simultaneous detection and identification of B. rouxiae and B. basicola without the need for sequencing. Based on nucleotide variation in the MCM7 fragment, a new primer was designed to pair with the one developed by Nakane and Usami (2020) to specifically amplify a 159 bp amplicon of B. basicola. Subsequently, a duplex PCR assay was developed to simultaneously detect the two pathogens at a limit of an approximately 0.05 ng/µL. The duplex PCR was sensitive enough to detect B. rouxiae from crude extracts prepared from a 5-min-microwave-based DNA extraction protocol. Additionally, when used together with a nested PCR, the duplex PCR assay successfully detected the BRR pathogen in DNA extracts obtained directly from a small amount (15–30 mg) of diseased cotton tissue. This duplex PCR provides valuable diagnostic tool for detecting and monitoring the prevalence and distribution of BRR pathogens in cotton in Australia.
{"title":"Duplex PCR for the detection of the morphologically indistinguishable Berkeleyomyces rouxiae and Berkeleyomyces basicola from cotton in Australia","authors":"Chi P. T. Nguyen, Andrew Chen, Duy P. Le","doi":"10.1007/s13313-026-01096-z","DOIUrl":"10.1007/s13313-026-01096-z","url":null,"abstract":"<div><p><i>Berkeleyomyces rouxiae</i> is a highly destructive soil borne fungal pathogen causing a pandemic black root rot (BRR) disease of cotton seedlings in New South Wales, Australia. Accurate identification and differentiation of <i>B. rouxiae</i> from its morphological twin, <i>B. basicola</i> was solely based on DNA sequence analyses. In this study, we for the first time developed a duplex PCR assay for simultaneous detection and identification of <i>B. rouxiae</i> and <i>B. basicola</i> without the need for sequencing. Based on nucleotide variation in the MCM7 fragment, a new primer was designed to pair with the one developed by Nakane and Usami (2020) to specifically amplify a 159 bp amplicon of <i>B. basicola</i>. Subsequently, a duplex PCR assay was developed to simultaneously detect the two pathogens at a limit of an approximately 0.05 ng/µL. The duplex PCR was sensitive enough to detect <i>B. rouxiae</i> from crude extracts prepared from a 5-min-microwave-based DNA extraction protocol. Additionally, when used together with a nested PCR, the duplex PCR assay successfully detected the BRR pathogen in DNA extracts obtained directly from a small amount (15–30 mg) of diseased cotton tissue. This duplex PCR provides valuable diagnostic tool for detecting and monitoring the prevalence and distribution of BRR pathogens in cotton in Australia.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"55 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2026-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s13313-026-01096-z.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146027322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-23DOI: 10.1007/s13313-026-01094-1
Adrian M. Tulod, Jupiter V. Casas, Mark Jun A. Rojo, Rico A. Marin, Bryan Allan M. Talisay, Eric N. Bruno, Eldon James D. Coraler, Jayson N. Gelaga, Romeo R. Patano Jr., Nympha E. Branzuela, Edgar B. Solis, Sheryl S. Bayang, Joan S. Gilbero, Mhar O. Loquez, Espie M. Praca, Dennis M. Gilbero
Gall rust disease caused by Uromycladium falcatarium is a major constraint to the productivity of Falcataria falcata, a fast-growing leguminous tree widely planted in tropical reforestation and agroforestry systems. Despite its ecological and economic importance, the landscape-level environmental and silvicultural drivers of gall rust incidence remain poorly understood. This study examined site-specific factors of disease incidence and severity in 125 plantations spanning five administrative regions and elevation ranges in Mindanao, Philippines. Results showed that both disease incidence and severity increased with elevation, particularly at elevations > 400 m above sea level (ASL), where infection levels frequently exceeded 75% of trees per plot. Stand density emerged as the most consistent structural predictor, with low-density stands (< 1000 trees/ha) having higher incidence and severity. Other contributing factors included insect species richness, high soil water holding capacity, and an interaction between elevation and slope aspect, wherein northeast-facing slopes had higher risk at low elevations. Disease severity was also associated by proximity to roads and an elevation-dependent effect of soil nitrogen. These findings suggest the multifactorial nature of gall rust outbreaks and the need for integrated, site-specific disease management strategies. Maintaining adequate stand density, improving drainage in waterlogged sites, and strategic site planning may reduce disease pressure. The study provides critical baseline information for sustainable F. falcata cultivation and forest health planning in tropical plantation landscapes.
Gall锈病造成Uromycladium falcatarium的生产力是一个主要的约束Falcataria falcata,一个快速增长的广泛种植于热带豆科树造林和农林复合经营系统。尽管瘿锈病具有重要的生态和经济意义,但景观层面的环境和造林驱动因素仍然知之甚少。本研究调查了菲律宾棉兰老岛5个行政区域和海拔范围内125个人工林的特定地点疾病发病率和严重程度因素。结果表明,病害发病率和严重程度随海拔高度的增加而增加,特别是在海拔400 m (ASL),侵染率经常超过每地块75%的树木。林分密度是最一致的结构预测因子,低密度林分(1000棵/公顷)的发病率和严重程度更高。其他影响因素包括昆虫物种丰富度、高土壤持水能力以及海拔与坡向的相互作用,其中东北面坡在低海拔地区风险更高。疾病的严重程度还与靠近道路和土壤氮的海拔依赖效应有关。这些发现表明胆锈病爆发的多因素性质和需要综合的、特定地点的疾病管理策略。保持适当的林分密度,改善涝渍地区的排水系统,以及策略性的场地规划,都可以减少疾病的压力。该研究为热带人工林景观中镰形黄檀的可持续种植和森林健康规划提供了重要的基线信息。
{"title":"Drivers of gall rust disease in falcata (Falcataria falcata (L.) Greuter & R.Rankin) plantations across elevation gradients in Mindanao, Philippines","authors":"Adrian M. Tulod, Jupiter V. Casas, Mark Jun A. Rojo, Rico A. Marin, Bryan Allan M. Talisay, Eric N. Bruno, Eldon James D. Coraler, Jayson N. Gelaga, Romeo R. Patano Jr., Nympha E. Branzuela, Edgar B. Solis, Sheryl S. Bayang, Joan S. Gilbero, Mhar O. Loquez, Espie M. Praca, Dennis M. Gilbero","doi":"10.1007/s13313-026-01094-1","DOIUrl":"10.1007/s13313-026-01094-1","url":null,"abstract":"<div><p>Gall rust disease caused by <i>Uromycladium falcatarium</i> is a major constraint to the productivity of <i>Falcataria falcata</i>, a fast-growing leguminous tree widely planted in tropical reforestation and agroforestry systems. Despite its ecological and economic importance, the landscape-level environmental and silvicultural drivers of gall rust incidence remain poorly understood. This study examined site-specific factors of disease incidence and severity in 125 plantations spanning five administrative regions and elevation ranges in Mindanao, Philippines. Results showed that both disease incidence and severity increased with elevation, particularly at elevations > 400 m above sea level (ASL), where infection levels frequently exceeded 75% of trees per plot. Stand density emerged as the most consistent structural predictor, with low-density stands (< 1000 trees/ha) having higher incidence and severity. Other contributing factors included insect species richness, high soil water holding capacity, and an interaction between elevation and slope aspect, wherein northeast-facing slopes had higher risk at low elevations. Disease severity was also associated by proximity to roads and an elevation-dependent effect of soil nitrogen. These findings suggest the multifactorial nature of gall rust outbreaks and the need for integrated, site-specific disease management strategies. Maintaining adequate stand density, improving drainage in waterlogged sites, and strategic site planning may reduce disease pressure. The study provides critical baseline information for sustainable <i>F. falcata</i> cultivation and forest health planning in tropical plantation landscapes.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"55 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2026-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146027323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-22DOI: 10.1007/s13313-026-01086-1
Ben Ovenden, Fiona Schneiders, Brad Baxter, Nannan Yang, Merrin Spackman, Anil Raghavendra, Szabolcs Lehoczki-Krsjak, Steve Rogers, Ossie Wildman, Andrew Daly, Chris Anderson, Andrew Milgate
Rice blast disease is present in most rice-growing regions of the world and parts of Australia, however it was not previously known to occur in New South Wales. In February 2024, leaf symptoms characteristic of rice blast were observed on rice in a commercial field near Lismore in northern NSW. The pathogen was isolated and identified based on morphological and molecular features. Isolates were used to inoculate seedlings, resulting in disease symptoms under controlled growth conditions, and the pathogen was re-isolated from leaf lesions. This is the first confirmed report of rice blast disease on cultivated rice in New South Wales.
{"title":"First report of rice blast disease (Pyricularia oryzae) on rice (Oryza sativa L.) in New South Wales, Australia","authors":"Ben Ovenden, Fiona Schneiders, Brad Baxter, Nannan Yang, Merrin Spackman, Anil Raghavendra, Szabolcs Lehoczki-Krsjak, Steve Rogers, Ossie Wildman, Andrew Daly, Chris Anderson, Andrew Milgate","doi":"10.1007/s13313-026-01086-1","DOIUrl":"10.1007/s13313-026-01086-1","url":null,"abstract":"<div><p>Rice blast disease is present in most rice-growing regions of the world and parts of Australia, however it was not previously known to occur in New South Wales. In February 2024, leaf symptoms characteristic of rice blast were observed on rice in a commercial field near Lismore in northern NSW. The pathogen was isolated and identified based on morphological and molecular features. Isolates were used to inoculate seedlings, resulting in disease symptoms under controlled growth conditions, and the pathogen was re-isolated from leaf lesions. This is the first confirmed report of rice blast disease on cultivated rice in New South Wales.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"55 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s13313-026-01086-1.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146027350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
During 2023 and 2024, surveys across plum orchards in Himachal Pradesh, India, revealed a high disease incidence of 80%, characterized by typical canker symptoms on branches and trunks frequently accompanied by gum exudation. Twenty-seven bacterial isolates were recovered from symptomatic tissues of the plum cultivar ‘Black Amber’, and four representative isolates (P5, P6, P7, and P8) were subjected to morphological, biochemical, and molecular characterization. The isolates were identified as Gram-positive, coccoid, catalase-positive, and urease-positive obligate aerobes. Pathogenicity was confirmed through both the detached twig method and in planta glasshouse inoculations. Of the tested isolates, only P5 consistently induced characteristic necrotic lesions, sunken cankers, and gum exudation 18 to 30 days post-inoculation, with symptoms eventually leading to shoot dieback. Koch’s postulates were satisfied through the successful re-isolation of isolate P5 from symptomatic tissues. Molecular characterization and phylogenetic analysis based on 16S rRNA, gyrB, and leuS gene sequencing (GenBank accessions PV162547.1, PV268675, and PV268676) confirmed the identity of the pathogen as Staphylococcus warneri. While this bacterium has been previously reported on Prunus species in Iran, this study represents the first report of S. warneri causing bacterial canker and gummosis of plum in India, identifying it as a significant emerging threat to the region's stone fruit production.
{"title":"First report of bacterial canker and gummosis of Plum caused by Staphylococcus Warneri in the Indian Himalayan region","authors":"Shakshi Sharma, Manica Tomar, Santosh Watpade, Sunita Devi","doi":"10.1007/s13313-026-01089-y","DOIUrl":"10.1007/s13313-026-01089-y","url":null,"abstract":"<div><p>During 2023 and 2024, surveys across plum orchards in Himachal Pradesh, India, revealed a high disease incidence of 80%, characterized by typical canker symptoms on branches and trunks frequently accompanied by gum exudation. Twenty-seven bacterial isolates were recovered from symptomatic tissues of the plum cultivar ‘Black Amber’, and four representative isolates (P5, P6, P7, and P8) were subjected to morphological, biochemical, and molecular characterization. The isolates were identified as Gram-positive, coccoid, catalase-positive, and urease-positive obligate aerobes. Pathogenicity was confirmed through both the detached twig method and in planta glasshouse inoculations. Of the tested isolates, only P5 consistently induced characteristic necrotic lesions, sunken cankers, and gum exudation 18 to 30 days post-inoculation, with symptoms eventually leading to shoot dieback. Koch’s postulates were satisfied through the successful re-isolation of isolate P5 from symptomatic tissues. Molecular characterization and phylogenetic analysis based on 16S rRNA, <i>gyrB</i>, and <i>leuS</i> gene sequencing (GenBank accessions PV162547.1, PV268675, and PV268676) confirmed the identity of the pathogen as <i>Staphylococcus warneri</i>. While this bacterium has been previously reported on Prunus species in Iran, this study represents the first report of <i>S. warneri</i> causing bacterial canker and gummosis of plum in India, identifying it as a significant emerging threat to the region's stone fruit production.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"55 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146027298","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}