Pub Date : 2024-11-14DOI: 10.1007/s13313-024-01001-6
N Sagar, M M Jamadar, Sandip Shil, Balanagouda Patil, C N Lakshminarayana Reddy, C R Jahir Basha, N H Shalini
The research focuses on the spatial distribution of grape downy mildew in different vineyards across major districts in Karnataka, India. Covering 6 administrative districts, 14 taluks, and 130 villages, the study employs geostatistical techniques, including GIS, point pattern analysis, and interpolation, to assess the severity and spatial patterns of the disease. Utilizing a 0–9 severity scale, the investigation reveals varying degrees of downy mildew infection in surveyed areas, with potential clusters identified through spatial analysis. District-wise and taluk-specific analyses highlight variations in disease severity, with Doddaballapura exhibiting the highest index at 64.21%, and the lowest at 20.12% in Bagalkot. Agglomerative hierarchical cluster analysis identifies two main clusters among the surveyed districts, providing insights into regional disease patterns. Spatial point pattern analysis, including Local Moran’s I and Ripley’s K function, confirms the presence of clusters and offers a deeper understanding of disease dynamics. Interpolation techniques, such as IDW, reveal inconsistent disease occurrence across locations, emphasizing the need for targeted intervention. Ordinary and indicator kriging provide detailed spatial maps, showing disease severity hot spots in southern Karnataka and select areas in Bijapur district. The study underscores the urgency of addressing the growing threat of grape downy mildew, offering scientifically robust insights for disease management strategies in Karnataka’s diverse grape ecosystems.
{"title":"Unravelling spatial dynamics and identification of risk regions associated with grape downy mildew in Karnataka using geostatistical approaches","authors":"N Sagar, M M Jamadar, Sandip Shil, Balanagouda Patil, C N Lakshminarayana Reddy, C R Jahir Basha, N H Shalini","doi":"10.1007/s13313-024-01001-6","DOIUrl":"10.1007/s13313-024-01001-6","url":null,"abstract":"<div><p>The research focuses on the spatial distribution of grape downy mildew in different vineyards across major districts in Karnataka, India. Covering 6 administrative districts, 14 taluks, and 130 villages, the study employs geostatistical techniques, including GIS, point pattern analysis, and interpolation, to assess the severity and spatial patterns of the disease. Utilizing a 0–9 severity scale, the investigation reveals varying degrees of downy mildew infection in surveyed areas, with potential clusters identified through spatial analysis. District-wise and taluk-specific analyses highlight variations in disease severity, with Doddaballapura exhibiting the highest index at 64.21%, and the lowest at 20.12% in Bagalkot. Agglomerative hierarchical cluster analysis identifies two main clusters among the surveyed districts, providing insights into regional disease patterns. Spatial point pattern analysis, including Local Moran’s I and Ripley’s K function, confirms the presence of clusters and offers a deeper understanding of disease dynamics. Interpolation techniques, such as IDW, reveal inconsistent disease occurrence across locations, emphasizing the need for targeted intervention. Ordinary and indicator kriging provide detailed spatial maps, showing disease severity hot spots in southern Karnataka and select areas in Bijapur district. The study underscores the urgency of addressing the growing threat of grape downy mildew, offering scientifically robust insights for disease management strategies in Karnataka’s diverse grape ecosystems.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 6","pages":"485 - 502"},"PeriodicalIF":0.9,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142889538","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-28DOI: 10.1007/s13313-024-00999-z
Sari Nurulita, Andrew D. W. Geering, Kathleen S. Crew, Stephen Harper, John E. Thomas
In 2019, symptoms typical of infection by iris yellow spot virus (IYSV; family Tospoviridae, genus Orthotospovirus) were observed on shallot (A. cepa var. aggregatum) grown at the Gatton Research Facility, Department of Agriculture and Fisheries, Queensland. Initial testing by DAS-ELISA was positive for IYSV, and subsequent specific RT-PCR amplifying part of the RdRp (L-segment) and sequencing of amplicons confirmed the IYSV infection. This is the first record of IYSV infection of shallot in Australia.
2019年,虹膜黄斑病毒感染的典型症状;在昆士兰州农业和渔业部加顿研究所种植的葱(A. cepa var. aggregatum)上观察到正形孢子病毒科(Tospoviridae, orthotospovivirus属)。DAS-ELISA初步检测IYSV阳性,随后特异性RT-PCR扩增部分RdRp (l段)和扩增子测序证实IYSV感染。这是澳大利亚首次记录到青葱感染IYSV。
{"title":"First report of iris yellow spot virus infecting shallot (Allium cepa var. aggregatum) in Australia","authors":"Sari Nurulita, Andrew D. W. Geering, Kathleen S. Crew, Stephen Harper, John E. Thomas","doi":"10.1007/s13313-024-00999-z","DOIUrl":"10.1007/s13313-024-00999-z","url":null,"abstract":"<div><p>In 2019, symptoms typical of infection by iris yellow spot virus (IYSV; family <i>Tospoviridae</i>, genus <i>Orthotospovirus</i>) were observed on shallot (<i>A. cepa</i> var. <i>aggregatum</i>) grown at the Gatton Research Facility, Department of Agriculture and Fisheries, Queensland. Initial testing by DAS-ELISA was positive for IYSV, and subsequent specific RT-PCR amplifying part of the RdRp (L-segment) and sequencing of amplicons confirmed the IYSV infection. This is the first record of IYSV infection of shallot in Australia.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 6","pages":"593 - 596"},"PeriodicalIF":0.9,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s13313-024-00999-z.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142889755","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-24DOI: 10.1007/s13313-024-01000-7
André Luiz Graf, Camilla Castellar, Marcos Paulo Rosa, Renan Reisdorfer Schorr, Francisco de Assis Marques, Miguel Daniel Noseda, Henrique da Silva Silveira Duarte, Louise Larissa May De Mio
Leaf spot (LS) (Pseudocercospora vitis) and ripe rot (Colletotrichum spp.) cause significant losses to rustic grapevine cultivar ‘Bordo’ (Vitis labrusca), which is cultivated for juice production. The demand for juice from organic agriculture has been growing, resulting in the need for biorational products to manage disease with more environmentally friendly products. In this study, the potential of two products were evaluated in the field for managing LS and RR in the cultivar ‘Bordô’ over two seasons. The bacterial suspensions of Bacillus alcalophilus and eugenol acetate + potassium bicarbonate (750 mg L− 1) applied with conventional spraying (first season) and conventional and electrostatic spraying (second season) were assessed for disease control. Standard winter treatments, along with pest and weed control was performed. Severity of LS was evaluated over time, and the area under the disease progress curve (AUDPC) was used to compare treatments. RR incidence was assessed at harvest and post-harvest during storage, simulating the commercialization period. With post-harvest disease data, the relative risk of ripe rot symptom expression was calculated. B. alcalophilus in both seasons and, eugenol acetate with electrostatic application in second season reduced LS severity. Electrostatic and conventional spraying did not differ in disease control potential in the evaluated season. The ripe rot symptoms achieved 67% of incidence in the control treatment and the treatments tested were not effective in reducing the incidence of the disease. Cluster weight and total soluble solids did not differ between treatments. The biorational products tested are not effective for ripe rot control, however, they may be recommended for LS control in an organic system.
{"title":"Biorational products in the management of leaf spot and grape ripe rot in Vitis labrusca","authors":"André Luiz Graf, Camilla Castellar, Marcos Paulo Rosa, Renan Reisdorfer Schorr, Francisco de Assis Marques, Miguel Daniel Noseda, Henrique da Silva Silveira Duarte, Louise Larissa May De Mio","doi":"10.1007/s13313-024-01000-7","DOIUrl":"10.1007/s13313-024-01000-7","url":null,"abstract":"<div><p>Leaf spot (LS) (<i>Pseudocercospora vitis</i>) and ripe rot (<i>Colletotrichum</i> spp.) cause significant losses to rustic grapevine cultivar ‘Bordo’ (<i>Vitis labrusca</i>), which is cultivated for juice production. The demand for juice from organic agriculture has been growing, resulting in the need for biorational products to manage disease with more environmentally friendly products. In this study, the potential of two products were evaluated in the field for managing LS and RR in the cultivar ‘Bordô’ over two seasons. The bacterial suspensions of <i>Bacillus alcalophilus</i> and eugenol acetate + potassium bicarbonate (750 mg L<sup>− 1</sup>) applied with conventional spraying (first season) and conventional and electrostatic spraying (second season) were assessed for disease control. Standard winter treatments, along with pest and weed control was performed. Severity of LS was evaluated over time, and the area under the disease progress curve (AUDPC) was used to compare treatments. RR incidence was assessed at harvest and post-harvest during storage, simulating the commercialization period. With post-harvest disease data, the relative risk of ripe rot symptom expression was calculated. <i>B. alcalophilus</i> in both seasons and, eugenol acetate with electrostatic application in second season reduced LS severity. Electrostatic and conventional spraying did not differ in disease control potential in the evaluated season. The ripe rot symptoms achieved 67% of incidence in the control treatment and the treatments tested were not effective in reducing the incidence of the disease. Cluster weight and total soluble solids did not differ between treatments. The biorational products tested are not effective for ripe rot control, however, they may be recommended for LS control in an organic system.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 6","pages":"473 - 484"},"PeriodicalIF":0.9,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142889605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-22DOI: 10.1007/s13313-024-00998-0
Harshitsinh R. Vala, Shaun Bochow, Monica Kehoe, Asaduzzaman Prodhan, Richard I. Davis
Sri Lankan cassava mosaic virus (SLCMV) is one of the viruses that cause cassava mosaic disease. Strong mosaic symptoms on a cassava plant in the Northern Territory tested positive in begomovirus specific PCR testing. The DNA sequence of the amplicon was 96.38% similar (over 528 bp) to SLCMV, a result confirmed by sequencing genomic DNA. This is the first record of SLCMV in Australia, and outside of Asia.
{"title":"First report of Sri Lankan cassava mosaic virus in Australia","authors":"Harshitsinh R. Vala, Shaun Bochow, Monica Kehoe, Asaduzzaman Prodhan, Richard I. Davis","doi":"10.1007/s13313-024-00998-0","DOIUrl":"10.1007/s13313-024-00998-0","url":null,"abstract":"<div><p>Sri Lankan cassava mosaic virus (SLCMV) is one of the viruses that cause cassava mosaic disease. Strong mosaic symptoms on a cassava plant in the Northern Territory tested positive in begomovirus specific PCR testing. The DNA sequence of the amplicon was 96.38% similar (over 528 bp) to SLCMV, a result confirmed by sequencing genomic DNA. This is the first record of SLCMV in Australia, and outside of Asia.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 6","pages":"589 - 591"},"PeriodicalIF":0.9,"publicationDate":"2024-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142889809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-11DOI: 10.1007/s13313-024-00996-2
İlker Kurbetli, Gürsel Karaca
Pomegranate (Punica granatum L.) is an important fruit species for both human nutrition and the pharmaceutical industries, and is also an important export product for Türkiye. Pomegranate root and collar rot caused by Phytophthora nicotianae and P. palmivora is the main disease of this crop and the major limiting factor in production in Türkiye. The susceptibility of ten pomegranate cultivars to P. nicotianae and P. palmivora was investigated. One-year-old plants of ten cultivars (Asinar, Fellahyemez, Hicaznar, Katirbasi, BATEM-Hicrannar, BATEM-Esinnar, BATEM-Onurnar, BATEM-Yilmaznar, Izmir-23 and Izmir-1513) were tested using a soil infestation technique. At the end of the experiment, root weights significantly decreased and it was concluded that all cultivars were susceptible to the pathogens. In addition, leaf blight caused by Alternaria alternata, one of the most widespread foliar diseases of pomegranate in Türkiye, was frequently observed on the leaves of the plants inoculated with Phytophthora spp., while there was little disease on the leaves of control plants. This finding confirmed that plants under stress were more susceptible to pathogen infections. All isolates of P. nicotianae and P. palmivora obtained from pomegranate orchards were sensitive to mefenoxam. While EC50 values of P. nicotianae isolates were between 1.774 and 1.918 μg ml− 1, those of P. palmivora were between 1.895 and 1.944 μg ml− 1.
石榴(Punica granatum L.)是人类营养和医药工业的重要水果品种,也是我国重要的出口产品。由烟草疫霉和棕榈疫霉引起的石榴根茎腐病是石榴的主要病害,也是影响石榴生产的主要制约因素。研究了10个石榴品种对烟草假蝇和棕榈假蝇的敏感性。采用土壤侵染技术对10个品种(Asinar、Fellahyemez、Hicaznar、Katirbasi、BATEM-Hicrannar、BATEM-Esinnar、BATEM-Onurnar、BATEM-Yilmaznar、Izmir-23和Izmir-1513)的1年生植株进行了试验。试验结束时,各品种的根重均显著降低,说明各品种均对病原菌敏感。另外,接种疫霉的植株叶片上经常发生石榴叶枯病,而对照植株的叶片上几乎没有发生病害。这一发现证实了处于逆境中的植物更容易受到病原体的感染。从石榴果园分离得到的烟草假单胞菌和棕榈假单胞菌均对美非诺肟敏感。烟叶P. nicotianae分离株的EC50值为1.774 ~ 1.918 μg ml - 1,棕榈P. palmivora分离株的EC50值为1.895 ~ 1.944 μg ml - 1。
{"title":"Screening pomegranate cultivars for resistance to Phytophthora nicotianae and P. palmivora causing root and collar rot on pomegranate and sensitivity of the pathogen isolates to mefenoxam","authors":"İlker Kurbetli, Gürsel Karaca","doi":"10.1007/s13313-024-00996-2","DOIUrl":"10.1007/s13313-024-00996-2","url":null,"abstract":"<div><p>Pomegranate (<i>Punica granatum</i> L.) is an important fruit species for both human nutrition and the pharmaceutical industries, and is also an important export product for Türkiye. Pomegranate root and collar rot caused by <i>Phytophthora nicotianae</i> and <i>P. palmivora</i> is the main disease of this crop and the major limiting factor in production in Türkiye. The susceptibility of ten pomegranate cultivars to <i>P. nicotianae</i> and <i>P. palmivora</i> was investigated. One-year-old plants of ten cultivars (Asinar, Fellahyemez, Hicaznar, Katirbasi, BATEM-Hicrannar, BATEM-Esinnar, BATEM-Onurnar, BATEM-Yilmaznar, Izmir-23 and Izmir-1513) were tested using a soil infestation technique. At the end of the experiment, root weights significantly decreased and it was concluded that all cultivars were susceptible to the pathogens. In addition, leaf blight caused by <i>Alternaria alternata</i>, one of the most widespread foliar diseases of pomegranate in Türkiye, was frequently observed on the leaves of the plants inoculated with <i>Phytophthora</i> spp., while there was little disease on the leaves of control plants. This finding confirmed that plants under stress were more susceptible to pathogen infections. All isolates of <i>P. nicotianae</i> and <i>P. palmivora</i> obtained from pomegranate orchards were sensitive to mefenoxam. While EC<sub>50</sub> values of <i>P. nicotianae</i> isolates were between 1.774 and 1.918 μg ml<sup>− 1</sup>, those of <i>P. palmivora</i> were between 1.895 and 1.944 μg ml<sup>− 1</sup>.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 6","pages":"571 - 580"},"PeriodicalIF":0.9,"publicationDate":"2024-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142889675","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-09DOI: 10.1007/s13313-024-00995-3
Amor Bencheikh, Imane Belabed, Noureddine Rouag
This study aims to collect comprehensive research findings on Fusarium Head Blight (FHB) disease, where the host plant, wheat, was discussed in terms of its economic importance worldwide and then in Algeria, followed by addressing the economic significance of the disease in terms of its impact on both the yield and the health quality of the grain. After that, the causative agents were addressed, including the most important species of the Fusarium genus, its geographical distribution, life cycle, and, finally, the most essential methods used in identification. Research was also done on the study of the essential mycotoxins produced by Fusarium species in terms of their types and chemical composition. On the other hand, various strategies for controlling FHB were discussed, such as searching for resistant wheat varieties, cultural, chemical, biological, and possible integrated control.
{"title":"Fusarium head blight of wheat: current knowledge on associated species and their mycotoxins, pathogenicity diversity, and management strategies","authors":"Amor Bencheikh, Imane Belabed, Noureddine Rouag","doi":"10.1007/s13313-024-00995-3","DOIUrl":"10.1007/s13313-024-00995-3","url":null,"abstract":"<div><p>This study aims to collect comprehensive research findings on Fusarium Head Blight (FHB) disease, where the host plant, wheat, was discussed in terms of its economic importance worldwide and then in Algeria, followed by addressing the economic significance of the disease in terms of its impact on both the yield and the health quality of the grain. After that, the causative agents were addressed, including the most important species of the <i>Fusarium</i> genus, its geographical distribution, life cycle, and, finally, the most essential methods used in identification. Research was also done on the study of the essential mycotoxins produced by <i>Fusarium</i> species in terms of their types and chemical composition. On the other hand, various strategies for controlling FHB were discussed, such as searching for resistant wheat varieties, cultural, chemical, biological, and possible integrated control.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 6","pages":"457 - 471"},"PeriodicalIF":0.9,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142889792","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-04DOI: 10.1007/s13313-024-00997-1
Jingying Tang, Jingyi Wang, Jianyun Su, Xian Dong, Pengzhang Ji, Xia Chai, Jiahong Dong, Lei Zhang
Paris polyphylla var. yunnanensis is an important perennial medicinal plant whose production is greatly limited by various diseases, including leaf spot disease recently reported in Yunnan, China. However, the causative agent of P. polyphylla leaf spot is still unknown. This study isolated and identified the causal agent of P. polyphylla leaf spot from leaf tissues of infected plants through morphological and molecular characterization. The isolated fungus was identified as Alternaria alternata based on its morphological characteristics and nucleotide sequences of the elongation factor 1-alpha (EF1α), nuclear ribosomal internal transcribed spacer (ITS), the 28S nuclear ribosomal large subunit rRNA gene (LSU), the 18S nuclear ribosomal small subunit rRNA gene (SSU), and the second largest subunit of nuclear DNA-directed RNA polymerase II (RPB2). The re-isolation of the isolate fulfilled Koch´s postulates, indicating that A. alternata was the causal agent of P. polyphylla leaf spot. The findings of this study will potentially pave the way for epidemiological forecasting and developing control strategies for this disease.
{"title":"Identification and pathogenicity analysis of Alternaria alternata, the causal agent of leaf spot disease in Paris polyphylla var. yunnanensis","authors":"Jingying Tang, Jingyi Wang, Jianyun Su, Xian Dong, Pengzhang Ji, Xia Chai, Jiahong Dong, Lei Zhang","doi":"10.1007/s13313-024-00997-1","DOIUrl":"10.1007/s13313-024-00997-1","url":null,"abstract":"<div><p><i>Paris polyphylla</i> var. <i>yunnanensis</i> is an important perennial medicinal plant whose production is greatly limited by various diseases, including leaf spot disease recently reported in Yunnan, China. However, the causative agent of <i>P. polyphylla</i> leaf spot is still unknown. This study isolated and identified the causal agent of <i>P. polyphylla</i> leaf spot from leaf tissues of infected plants through morphological and molecular characterization. The isolated fungus was identified as <i>Alternaria alternata</i> based on its morphological characteristics and nucleotide sequences of the elongation factor 1-alpha (<i>EF1α</i>), nuclear ribosomal internal transcribed spacer (ITS), the 28S nuclear ribosomal large subunit rRNA gene (LSU), the 18S nuclear ribosomal small subunit rRNA gene (SSU), and the second largest subunit of nuclear DNA-directed RNA polymerase II (<i>RPB2</i>). The re-isolation of the isolate fulfilled Koch´s postulates, indicating that <i>A. alternata</i> was the causal agent of <i>P. polyphylla</i> leaf spot. The findings of this study will potentially pave the way for epidemiological forecasting and developing control strategies for this disease.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 6","pages":"581 - 587"},"PeriodicalIF":0.9,"publicationDate":"2024-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142889957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-03DOI: 10.1007/s13313-024-00992-6
Angel N. Maduke, Bernard Slippers, Elna van der Linde, Mike J. Wingfield, Gerda Fourie
Botryosphaeriaceae species are important latent pathogens causing diseases on trees utilized in forestry and agriculture. In recent years, there has been an increase in the incidence and severity of branch dieback and decline on macadamia trees in South Africa, and species of Botryosphaeriaceae have been considered as a possible cause. Although botryosphaeria dieback has been well-studied in Australia, there is little information regarding these fungi on Macadamia in South Africa. The aims of this study were consequently to (i) identify species of Botryosphaeriaceae from Macadamia branches from main production regions in South Africa, (ii) compare the diversity of species between symptomatic and asymptomatic branches, as well as between different growing regions, (iii) and to consider their relative importance in causing dieback. Eight species and three putative hybrids of the Botryosphaeriaceae were identified based on a phylogenetic comparison of sequence data from the ITS rDNA, tub2, tef-1α and rpb2 loci. These included an unidentified Diplodia sp., and Lasiodiplodia sp., as well as L. gilanensis, L. theobromae, L. pseudotheobromae, Neofusicoccum kwambonambiense, N. luteum, N. parvum and three hybrid species. The unidentified species of Diplodia., Lasiodiplodia sp., L. gilanensis, and N. kwambonambiense are reported for the first time on Macadamia in South Africa. All species showed a potential to cause branch dieback symptoms, with species of Neofusicoccum identified as the most aggressive species. This study revealed a high level of diversity of Botryosphaeriaceae species and illustrates their potential as causal agents of dieback on Macadamia in South Africa.
{"title":"Botryosphaeriaceae species associated with branch dieback and decline of macadamia trees in South Africa","authors":"Angel N. Maduke, Bernard Slippers, Elna van der Linde, Mike J. Wingfield, Gerda Fourie","doi":"10.1007/s13313-024-00992-6","DOIUrl":"10.1007/s13313-024-00992-6","url":null,"abstract":"<div><p><i>Botryosphaeriaceae</i> species are important latent pathogens causing diseases on trees utilized in forestry and agriculture. In recent years, there has been an increase in the incidence and severity of branch dieback and decline on macadamia trees in South Africa, and species of <i>Botryosphaeriaceae</i> have been considered as a possible cause. Although botryosphaeria dieback has been well-studied in Australia, there is little information regarding these fungi on Macadamia in South Africa. The aims of this study were consequently to (i) identify species of <i>Botryosphaeriaceae</i> from Macadamia branches from main production regions in South Africa, (ii) compare the diversity of species between symptomatic and asymptomatic branches, as well as between different growing regions, (iii) and to consider their relative importance in causing dieback. Eight species and three putative hybrids of the <i>Botryosphaeriaceae</i> were identified based on a phylogenetic comparison of sequence data from the ITS rDNA, <i>tub2</i>, <i>tef-1α</i> and <i>rpb2</i> loci. These included an unidentified <i>Diplodia</i> sp<i>.,</i> and <i>Lasiodiplodia</i> sp<i>.</i>, as well as <i>L. gilanensis, L. theobromae, L. pseudotheobromae</i><i>, </i><i>Neofusicoccum kwambonambiense, N. luteum, N. parvum</i> and three hybrid species. The unidentified species of <i>Diplodia</i>.<i>, Lasiodiplodia</i> sp.<i>, L. gilanensis,</i> and <i>N. kwambonambiense</i> are reported for the first time on Macadamia in South Africa. All species showed a potential to cause branch dieback symptoms, with species of <i>Neofusicoccum</i> identified as the most aggressive species. This study revealed a high level of diversity of <i>Botryosphaeriaceae</i> species and illustrates their potential as causal agents of dieback on Macadamia in South Africa.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 5","pages":"419 - 434"},"PeriodicalIF":0.9,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s13313-024-00992-6.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142186017","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Corm rot of saffron is the deadliest disease of saffron and a major bottleneck in its successful cultivation in Jammu and Kashmir, India. To date, only limited information has been made available for the monitoring, surveillance, and detection of plant pathogens associated with corm rot of saffron in this region. Incidence and severity of corm rot caused by multiple pathogens, viz., Fusarium oxysporum, Fusarium solani, Aspergillus niger, Penicillium corymbiferum, Rhizoctonia solani, and Macrophomina phaseolina, was assessed in saffron growing regions based on multiple field surveys conducted at the farmer’s fields in Kishtwar district of Jammu and Kashmir, during June-July 2021 and 2022. Corm rot was prevalent in all the surveyed prefectures of the saffron growing region, with a maximum disease incidence (62.02%) and severity (43.68%) at Lower Pochhal. The disease manifested as yellowing, drooping, and wilting of shoots during flowering, resulting in dying of the foliage which subsequently led to rotting of corms. Association of six fungal species viz., Fusarium oxysporum, Fusarium solani, Aspergillus niger, Penicillium corymbiferum, Rhizoctonia solani and Macrophomina phaseolina was recorded from the infected saffron corms based on morphological characteristics. Out of these, F. oxysporum was the predominant pathogen, and was present in all the surveyed locations. Species specific SCAR (Sequence Characterized Amplified Region) primers (FO-SCAR-FP and FO-SCAR-RP) were designed for effective detection and diagnosis of F. oxysporum, as it emerged as the major pathogen. Results of the present study may provide new insights into the monitoring of the corm rot and the deployment of an effective disease management strategy that will enhance the production, and productivity of saffron. This being the first comprehensive survey in the region, it provides basic information regarding the occurrence of disease, the distribution of various pathogens associated with it and also about the detection and monitoring of F. oxysporum.
{"title":"Development of ISSR-Derived SCAR marker for detection of Fusarium oxysporum responsible for corm rot of saffron","authors":"Vishal Gupta, Gayatri Jamwal, Chahal Verma, Akash Sharma, Sushil Kumar Gupta, Satish Kumar Sharma, Fayaz Ahmad Mohiddin, Zakir Amin","doi":"10.1007/s13313-024-00994-4","DOIUrl":"10.1007/s13313-024-00994-4","url":null,"abstract":"<div><p>Corm rot of saffron is the deadliest disease of saffron and a major bottleneck in its successful cultivation in Jammu and Kashmir, India. To date, only limited information has been made available for the monitoring, surveillance, and detection of plant pathogens associated with corm rot of saffron in this region. Incidence and severity of corm rot caused by multiple pathogens, viz., <i>Fusarium oxysporum</i>,<i> Fusarium solani</i>,<i> Aspergillus niger</i>,<i> Penicillium corymbiferum</i>,<i> Rhizoctonia solani</i>, and <i>Macrophomina phaseolina</i>, was assessed in saffron growing regions based on multiple field surveys conducted at the farmer’s fields in Kishtwar district of Jammu and Kashmir, during June-July 2021 and 2022. Corm rot was prevalent in all the surveyed prefectures of the saffron growing region, with a maximum disease incidence (62.02%) and severity (43.68%) at Lower Pochhal. The disease manifested as yellowing, drooping, and wilting of shoots during flowering, resulting in dying of the foliage which subsequently led to rotting of corms. Association of six fungal species viz., <i>Fusarium oxysporum</i>,<i> Fusarium solani</i>,<i> Aspergillus niger</i>,<i> Penicillium corymbiferum</i>,<i> Rhizoctonia solani</i> and <i>Macrophomina phaseolina</i> was recorded from the infected saffron corms based on morphological characteristics. Out of these, <i>F. oxysporum</i> was the predominant pathogen, and was present in all the surveyed locations. Species specific SCAR (Sequence Characterized Amplified Region) primers (FO-SCAR-FP and FO-SCAR-RP) were designed for effective detection and diagnosis of <i>F. oxysporum</i>, as it emerged as the major pathogen. Results of the present study may provide new insights into the monitoring of the corm rot and the deployment of an effective disease management strategy that will enhance the production, and productivity of saffron. This being the first comprehensive survey in the region, it provides basic information regarding the occurrence of disease, the distribution of various pathogens associated with it and also about the detection and monitoring of <i>F. oxysporum</i>.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 5","pages":"443 - 456"},"PeriodicalIF":0.9,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142186021","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-02DOI: 10.1007/s13313-024-00987-3
Késsia Fátima Cunha Pantoja, Alessandra de Jesus Boari, Bruno Rossitto De Marchi, Jorge Alberto Marques Rezende, Elliot Watanabe Kitajima, Rivadalve Coelho Gonçalves, Giselle Mariano Lessa Assis, Renate Krause-Sakate
The cowpea chlorotic mottle virus (CCMV) was detected in forage peanut plants (Arachis pintoi), showing mosaic, yellowing, and interveinal chlorosis. Negatively stained partially purified preparations contained isometric particles ca. 30 nm in size, also present in the cytoplasm and vacuole of leaf parenchymal cells from CCMV-infected A. pintoi leaves. Mechanical transmission of the CCMV leaf extracts from symptomatic A. pintoi plants resulted in systemic mosaic in A. pintoi cv. BRS Mandobi, Vigna unguiculata L. cv Pretinha, and V. unguiculata sg. sesquipedalis cv. De Metro plants; mottle on leaves of inoculated Nicotiana occidentalis and N. benthamiana; and local necrotic and chlorotic lesions in Chenopodium quinoa and C. amaranticolor, respectively. High-throughput sequencing (HTS) allowed us to identify the causal agent as the CCMV and obtain the complete nucleotide sequence of the three genome components. BLAST search in the nucleotide database revealed high identities of the genome components with previously reported CCMV isolates. Primer was designed based on the HTS-derived sequence and efficiently detected CCMV in the infected A. pintoi samples. To our knowledge, this is the first report of CCMV infecting forage peanuts.
{"title":"Detection and characterization of the cowpea chlorotic mottle virus in forage peanut (Arachis pintoi) in Brazil","authors":"Késsia Fátima Cunha Pantoja, Alessandra de Jesus Boari, Bruno Rossitto De Marchi, Jorge Alberto Marques Rezende, Elliot Watanabe Kitajima, Rivadalve Coelho Gonçalves, Giselle Mariano Lessa Assis, Renate Krause-Sakate","doi":"10.1007/s13313-024-00987-3","DOIUrl":"10.1007/s13313-024-00987-3","url":null,"abstract":"<div><p>The cowpea chlorotic mottle virus (CCMV) was detected in forage peanut plants (<i>Arachis pintoi</i>), showing mosaic, yellowing, and interveinal chlorosis. Negatively stained partially purified preparations contained isometric particles ca. 30 nm in size, also present in the cytoplasm and vacuole of leaf parenchymal cells from CCMV-infected <i>A. pintoi</i> leaves. Mechanical transmission of the CCMV leaf extracts from symptomatic <i>A. pintoi</i> plants resulted in systemic mosaic in <i>A. pintoi</i> cv. BRS Mandobi, <i>Vigna unguiculata</i> L. cv Pretinha, and <i>V. unguiculata</i> sg. <i>sesquipedalis</i> cv. De Metro plants; mottle on leaves of inoculated <i>Nicotiana occidentalis</i> and <i>N. benthamiana</i>; and local necrotic and chlorotic lesions in <i>Chenopodium quinoa</i> and <i>C. amaranticolor,</i> respectively. High-throughput sequencing (HTS) allowed us to identify the causal agent as the CCMV and obtain the complete nucleotide sequence of the three genome components. BLAST search in the nucleotide database revealed high identities of the genome components with previously reported CCMV isolates. Primer was designed based on the HTS-derived sequence and efficiently detected CCMV in the infected <i>A. pintoi</i> samples. To our knowledge, this is the first report of CCMV infecting forage peanuts.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":"53 5","pages":"385 - 389"},"PeriodicalIF":0.9,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142186016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}