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Dynamics of rotating paramagnetic particles simulated by lattice Boltzmann and particle dynamics methods. 用晶格玻尔兹曼和粒子动力学方法模拟旋转顺磁粒子动力学。
Pub Date : 2006-12-01 DOI: 10.1049/ip-nbt:20060009
A Yadav, R Calhoun, P E Phelan, A K Vuppu, A A Garcia, M Hayes

Novel biochemical sensors consisting of rotating chains of microscale paramagnetic particles have been proposed that would enable convenient, sensitive analyte detection. Predicting the dynamics of these particles is required to optimise their design. The results of lattice Boltzmann (LB) and particle dynamics (PD) simulations are reported, where the LB approach provides a verified solution of the complete Navier-Stokes equations, including the hydrodynamic interactions among the particles. On the other hand, the simpler PD approach neglects hydrodynamic interactions, and does not compute the fluid motion. It is shown that macroscopic properties, like the number of aggregated particles, depend only on the drag force and not on the total hydrodynamic force, making PD simulations yield reasonably accurate predictions. Relatively good agreement between the LB and PD simulations, and qualitative agreement with experimental data, are found for the number of aggregated particles as a function of the Mason number. The drag force on a rotating cylinder is significantly different from that on particle chains calculated from both simulations, demonstrating the different dynamics between the two cases. For microscopic quantities like the detailed force distributions on each particle, the complete Navier-Stokes solution, here represented by the LB simulation, is required.

新型生化传感器由微尺度顺磁颗粒的旋转链组成,可实现方便、灵敏的分析物检测。预测这些粒子的动力学是优化它们的设计所必需的。本文报道了晶格玻尔兹曼(LB)和粒子动力学(PD)模拟的结果,其中LB方法提供了完整的Navier-Stokes方程的验证解,包括粒子之间的流体动力学相互作用。另一方面,简单的PD方法忽略了流体动力相互作用,并且不计算流体运动。结果表明,宏观性质,如聚集粒子的数量,只取决于阻力而不取决于总水动力,使得PD模拟产生相当准确的预测。LB和PD模拟之间的一致性相对较好,并且与实验数据的定性一致,发现聚集粒子的数量作为梅森数的函数。在两种情况下,旋转圆柱体上的阻力与粒子链上的阻力存在显著差异,表明了两种情况下的动力学差异。对于像每个粒子上的详细力分布这样的微观量,需要完整的Navier-Stokes解,这里用LB模拟表示。
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引用次数: 8
Absorption detection of enzymatic reaction using optical microfluidics based intermittent flow microreactor system. 基于光学微流体间歇流微反应器系统的酶促反应吸收检测。
Pub Date : 2006-12-01 DOI: 10.1049/ip-nbt:20060012
A Chandrasekaran, M Packirisamy

The advantages of integrating microfluidics into photonics-based biosensing for fabricating microreactor type lab-on-a-chip devices carries a lot of advantages, such as smaller sample volume handling, controlled drug delivery and high throughput diagnosis, which is useful for in situ medical diagnosis and point-of-care (POC) testing. A hybrid integrated optical microfluidic system has been developed for the study of single molecules and enzymatic reactions. The method of optical absorption has been employed for biosensing and the feasibility of absorption-based detection on the microfluidic platform has been demonstrated using horseradish peroxidase and hydrogen peroxide, as an example. The results show that the device is useful for the analysis of both the individual chemical specimen and also the study of chemical and biological reaction between two reacting species. The hybrid integration of microfluidics and optical ensembles thus forms the basis for developing the microreactor type lab-on-a-chip device, which would have several important applications in the area of nanobiotechnology.

将微流体集成到基于光子的生物传感中,用于制造微反应器型芯片实验室设备,具有许多优点,例如更小的样本量处理,控制药物输送和高通量诊断,这对于现场医学诊断和护理点(POC)测试非常有用。开发了一种用于单分子和酶促反应研究的混合集成光学微流控系统。光学吸收方法已被用于生物传感,并以辣根过氧化物酶和过氧化氢为例,证明了在微流控平台上基于吸收检测的可行性。结果表明,该装置既可用于分析单个化学样品,也可用于研究两种反应物质之间的化学和生物反应。因此,微流体和光学集成的混合集成形成了开发微反应器型芯片上实验室设备的基础,这将在纳米生物技术领域有几个重要的应用。
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引用次数: 15
Analysis of cellular structure by light scattering measurements in a new cytometer design based on a liquid-core waveguide. 基于液芯波导的新型细胞仪设计中的细胞结构光散射分析。
Pub Date : 2006-10-01 DOI: 10.1049/ip-nbt:20060004
Y H Ji
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引用次数: 10
Application of nano-indenter for investigation of the properties of the elytra cuticle of the dung beetle (Copris ochus Motschulsky). 纳米压头在屎壳虫鞘翅角质层特性研究中的应用。
Pub Date : 2006-10-01 DOI: 10.1049/ip-nbt:20050050
J Y Sun, J Tong, J Zhou

The nanomechanical properties of the multilayer elytra cuticle of the dung beetle (Copris ochus Motschulsky) were investigated in the vertical and transverse directions using a nano-indenter. The reduced modulus Ev and hardness Hv of the surface cuticle in the vertical direction obtained by nano-indentation were 3.54+/-0.12 GPa and 0.20+/-0.01 GP, respectively. The nano-indentation result showed that the reduced modulus E(t) and hardness Ht of each layer were gradually reduced from the outer layer to the inner layer in the transverse direction. Ev was less than the largest Et presented at the outer layer (7.06+/-0.54 GPa). It was supposedly formed as a result of the composite effect of the multilayer. Without consideration of the anisotropy of chitin, an experimental model was proposed to describe the nanomechanical properties of the elytra cuticle.

利用纳米压头对屎壳虫(Copris ochus Motschulsky)多层鞘翅角质层的纵向和横向纳米力学特性进行了研究。纳米压痕获得的表面角质层垂直方向的还原模量Ev和硬度Hv分别为3.54+/-0.12 GPa和0.20+/-0.01 GP。纳米压痕结果表明,各层的还原模量E(t)和硬度Ht在横向上由外层向内层逐渐降低。Ev小于外层最大Et (7.06+/-0.54 GPa)。它被认为是多层复合效应的结果。在不考虑甲壳素各向异性的情况下,提出了一种描述鞘翅角质层纳米力学特性的实验模型。
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引用次数: 17
Fast-scanning atomic force microscopy reveals the molecular mechanism of DNA cleavage by ApaI endonuclease. 快速扫描原子力显微镜揭示了ApaI内切酶裂解DNA的分子机制。
Pub Date : 2006-08-01 DOI: 10.1049/ip-nbt:20050018
M Yokokawa, S H Yoshimura, Y Naito, T Ando, A Yagi, N Sakai, K Takeyasu

Newly developed fast-scanning atomic force microscopy (AFM) allows the dissection of molecular events such as DNA-enzyme reactions at the single-molecule level. With this novel technology, a model is proposed of the DNA cleavage reaction by a type IIP restriction endonuclease ApaI. Detailed analyses revealed that ApaI bound to DNA as a dimer and slid along DNA in a one-dimensional diffusion manner. When it encountered a specific DNA sequence, the enzyme halted for a moment to digest the DNA. Immediately after digestion, the ApaI dimer separated into two monomers, each of which remained on the DNA end and then dissociated from the DNA end. Thus, fast-scanning AFM is a powerful tool to aid the understanding of protein structures and dynamics in biological reactions at the single-molecule level in sub-seconds.

新开发的快速扫描原子力显微镜(AFM)允许在单分子水平上解剖分子事件,如dna -酶反应。利用这种新技术,提出了IIP型限制性内切酶ApaI的DNA切割反应模型。详细分析表明,ApaI以二聚体形式与DNA结合,并以一维扩散方式沿着DNA滑动。当它遇到特定的DNA序列时,酶会暂停片刻来消化DNA。消化后,ApaI二聚体立即分离成两个单体,每个单体都留在DNA端,然后从DNA端解离。因此,快速扫描AFM是一种强大的工具,可以帮助理解单分子水平生物反应中的蛋白质结构和动力学。
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引用次数: 5
Microfluidic sensor for dynamic surface tension measurement. 用于动态表面张力测量的微流体传感器。
Pub Date : 2006-08-01 DOI: 10.1049/ip-nbt:20050013
N-T Nguyen, S Lassemono, F A Chollet, C Yang

A novel microfluidic sensor for measuring dynamic gas-liquid interfacial tension is reported. The device consists of a microfluidic chip with a microchannel network and an optical detection system. The sample is introduced into a main channel, while air is injected through a T-junction. Owing to the fixed flow rate ratio used for the sensor, surface tension is the only parameter determining bubble formation frequency, which can be measured by optical detection. Although the bubble is represented by a pulse in the output signal, the formation frequency is simply the frequency of the output signal. Measurements were carried out for aqueous solutions with different concentrations of the ionic surfactant cetyl trimethyl ammonium bromide. Surface tensions of these solutions were calibrated with a commercial tensiometer. The measurement results show a clear relationship between surface tension and formation frequency. The sensor can be used to identify the critical micelle concentration of the surfactant. The sensor potentially allows the use of a minute amount of sample compared with the relatively large amount required for existing commercial systems.

报道了一种用于测量气液界面张力的新型微流控传感器。该装置由带微通道网络的微流控芯片和光学检测系统组成。样品被引入主通道,而空气通过t型结注入。由于传感器采用固定的流量比,表面张力是决定气泡形成频率的唯一参数,可以通过光学检测来测量。虽然气泡在输出信号中由脉冲表示,但地层频率就是输出信号的频率。对不同浓度离子表面活性剂十六烷基三甲基溴化铵的水溶液进行了测定。这些溶液的表面张力用商用张力计校准。测量结果表明,表面张力与地层频率之间存在明显的关系。该传感器可用于识别表面活性剂的临界胶束浓度。与现有商业系统所需的相对大量的样品相比,该传感器潜在地允许使用极少量的样品。
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引用次数: 13
Characterisation of pore structures in nanoporous materials for advanced bionanotechnology. 用于先进生物纳米技术的纳米多孔材料的孔隙结构表征。
Pub Date : 2006-08-01 DOI: 10.1049/ip-nbt:20050020
K Heo, J Yoon, K S Jin, S Jin, M Ree

Porous materials are potential candidates for applications in various fields, such as bionanotechnology, gas separation, catalysts and micro-electronics. In particular, their applications in bionanotechnology include biosensors, biomedical implants and microdevices, biosupporters, bio-encapsules, biomolecule separations and biomedical therapy. All these bionanotechnology applications utilise the shape, size and size distribution of pores in porous materials. Therefore the controlled creation of pores with desired shape, size and size distribution is most important in the development of nanoporous materials. Accordingly, the accurate evaluation of pore structure is necessary in the development of nanoporous materials and their applications. This article reviews recent developments in analytical techniques to characterise the pore structures of nanoporous materials.

多孔材料在生物纳米技术、气体分离、催化剂和微电子等各个领域都有潜在的应用前景。特别是,它们在生物纳米技术中的应用包括生物传感器、生物医学植入物和微设备、生物支撑体、生物胶囊、生物分子分离和生物医学治疗。所有这些生物纳米技术的应用都利用了多孔材料中孔隙的形状、大小和大小分布。因此,在纳米多孔材料的开发过程中,控制形成具有理想形状、尺寸和尺寸分布的孔是最重要的。因此,对纳米多孔材料的孔结构进行准确的评价是开发纳米多孔材料及其应用的必要条件。本文综述了表征纳米多孔材料孔隙结构的分析技术的最新进展。
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引用次数: 11
Paramagnetic capture mode magnetophoretic microseparator for blood cells. 顺磁捕获模式磁泳微血细胞分离器。
Pub Date : 2006-08-01 DOI: 10.1049/ip-nbt:20050019
K-H Han, A B Frazier

The paper presents the characterisation of a continuous paramagnetic capture (PMC) mode magnetophoretic microseparator for separating red and white blood cells from whole blood based on their native magnetic properties. The PMC microseparator separates the blood cells using a high-gradient magnetic separation method without the use of additives such as magnetic tagging. The microseparator is fabricated using microfabrication technology, enabling the integration of micro-scale magnetic flux concentrators in an aqueous micro-environment. Experimental results show that the PMC microseparator can continuously separate out 91.1% of red blood cells from whole blood within 5 min, using an external magnetic flux of 0.2 T from a permanent magnet. Monitoring of white blood cells dyed with a fluorescent probe shows that 87.7% of white blood cells are separated out by the 0.2 T external magnetic flux applied to the PMC microseparator.

本文介绍了一种连续顺磁捕获(PMC)模式磁泳微分离器的特性,用于从全血中分离红细胞和白细胞。PMC微分离器使用高梯度磁分离方法分离血细胞,无需使用磁性标记等添加剂。该微分离器采用微加工技术制造,实现了微尺度磁通聚光器在水微环境中的集成。实验结果表明,PMC微分离器使用永磁体的外磁通为0.2 T,可在5 min内连续分离出全血中91.1%的红细胞。用荧光探针对白细胞染色的监测表明,施加在PMC微分离器上的0.2 T外磁通量可分离出87.7%的白细胞。
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引用次数: 40
Membrane channels as a tool to control nanoreactors. 膜通道作为控制纳米反应器的工具。
Pub Date : 2006-08-01 DOI: 10.1049/ip-nbt:20050027
M Lindemann, M Winterhalter

We present an example of the use of self-assembly of biomolecules to create nanostructured building blocks. The resulting individual compartments can be tailored to fulfil specific functions: catalysis of a chemical reaction in a confined environment, detection on a molecular level and feedback with the outside. For example, such individually designed components can be assembled to build up macroscopic chemically active filters. The main component is membrane channels acting as molecular sieves, able to control the permeation across the capsule wall. We introduce briefly a new microdevice to characterise membrane channels with a future potential for high-throughput screening of channel properties based on automation, parallelisation and the use of microfluidics. Subsequently, we outline a possible application for channel-forming proteins: encapsulation of charged polymers or proteins into liposomes and restriction of diffusion through transmembrane channels to small ions, creating a Donnan potential. This Donnan potential can be used for external manipulation of nanocontainers by coupling of the capsule to an external electric field, or for the selective uptake of small charged molecules into the capsule.

我们提出了一个使用生物分子的自组装来创建纳米结构构建块的例子。由此产生的单个隔间可以定制以实现特定功能:在受限环境中催化化学反应,在分子水平上进行检测,并与外部进行反馈。例如,这种单独设计的组件可以组装成宏观的化学活性过滤器。其主要成分是作为分子筛的膜通道,能够控制通过囊壁的渗透。我们简要介绍了一种新的微设备来表征膜通道,该设备具有基于自动化、并行化和微流体使用的高通量通道特性筛选的未来潜力。随后,我们概述了通道形成蛋白的可能应用:将带电聚合物或蛋白质封装到脂质体中,并通过跨膜通道限制小离子的扩散,从而产生唐南电位。这种唐纳电位可以通过将胶囊与外电场耦合来用于纳米容器的外部操作,或者用于选择性地将小带电分子吸收到胶囊中。
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引用次数: 9
Integration of microfluidics with biomedical infrared spectroscopy for analytical and diagnostic metabolic profiling. 集成微流体与生物医学红外光谱分析和诊断代谢谱。
Pub Date : 2006-08-01 DOI: 10.1049/ip-nbt:20050028
C D Mansfield, A Man, R A Shaw

We describe how infrared spectroscopy of dry films (IRDF) can provide diagnostic information, and how we expect integration with laminar fluid diffusion interface (LFDI) sample pre-processing to generate new analytical and diagnostic tests. LFDI pre-processing provides sample clean-up and analyte separation. The sensitivity of IRDF to certain analytes is enhanced through the depletion of sample constituents that otherwise obscure relevant spectral features, permitting the deposition of films with larger sample volumes and, hence, of greater effective optical pathlength for the targeted analytes. An integrated LFDI-IRDF technology holds promise both as a method for rapid point-of-care quantitative analysis of biological fluids and as the engine of discovery for a wide range of novel diagnostic methods based upon metabolic profiling. In particular, successful integration will provide a versatile and cost effective technology platform that will allow for the accurate quantification of low-concentration analytes that are otherwise inaccessible and will provide the basis for diagnostic and prognostic methods that would otherwise be impossible. The specific question addressed by the proof-of-concept study summarised here is whether the spectra of LFDI processed samples can provide analytical methods that are more accurate than otherwise possible without LFDI pre-processing. The enrichment of serum creatinine is accomplished, with subsequent enhancement of its spectral contribution permitting quantification of this clinically important analyte beyond that achievable with no pre-processing. Finally, to illustrate the potential in diagnostic applications, two recently initiated studies are outlined, one involving chronic kidney disease and the other for chronic and acute coronary artery disease.

我们描述了干膜红外光谱(IRDF)如何提供诊断信息,以及我们如何期望与层流扩散界面(LFDI)样品预处理相结合,以产生新的分析和诊断测试。LFDI预处理提供样品清理和分析物分离。IRDF对某些分析物的灵敏度通过耗尽样品成分来增强,否则会模糊相关的光谱特征,从而允许沉积具有更大样本量的薄膜,从而为目标分析物提供更大的有效光路长度。集成的LFDI-IRDF技术既可以作为生物流体的快速即时定量分析方法,也可以作为基于代谢谱分析的各种新型诊断方法的发现引擎。特别是,成功的整合将提供一个通用的和具有成本效益的技术平台,将允许对低浓度分析物进行准确的定量,否则将无法获得,并将为诊断和预后方法提供基础。这里总结的概念验证研究所解决的具体问题是,LFDI处理样品的光谱是否可以提供比未经LFDI预处理更准确的分析方法。完成了血清肌酐的富集,随后增强了其光谱贡献,允许对这种临床重要分析物进行定量,而无需预处理即可实现。最后,为了说明在诊断应用方面的潜力,概述了最近启动的两项研究,一项涉及慢性肾脏疾病,另一项涉及慢性和急性冠状动脉疾病。
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引用次数: 9
期刊
IEE proceedings. Nanobiotechnology
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