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The complexities of oligonucleotide therapeutics: analytical challenges and opportunities within early drug discovery. 寡核苷酸疗法的复杂性:早期药物发现中的分析挑战和机遇。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-12-11 DOI: 10.1080/17576180.2025.2600912
Manasses Jora, Christian Manz, Linda Thunberg, Mikko Hölttä, Tomas Leek, Werngard Czechtizky
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引用次数: 0
Comparing capillary blood collection technologies: assessing patient experience, device performance, & clinical accuracy. 比较毛细管采血技术:评估患者体验,设备性能和临床准确性。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-10-31 DOI: 10.1080/17576180.2025.2580284
Bradley B Collier, Whitney C Brandon, Matthew R Chappell, Gabriella Iacovetti, Nicolas Tokunaga, Ulrich Y Schaff, Greg J Sommer, Russell P Grant

Background: Despite recent advances in capillary blood collection technologies for implementation in a patient centric healthcare world, a direct comparison of various technologies has yet to be performed.

Research design and methods: A cross-sectional comparative study was performed by recruiting healthy subjects (n = 41) to participate in a collection comparison study consisting of four upper arm capillary collection technologies, a traditional fingerstick, and a venous collection. User experience (e.g. pain, preference), collection performance (e.g. sample volume and quality, collection time), and clinical accuracy with respect to venipuncture results were compared across technologies. In addition, healing was assessed by reaching out to subjects at two different time points following collection.

Results: User experience and collection performance results varied across the different capillary collection technologies and a single collection technology did not stand out as superior among those investigated. As correlative results were similar across all technologies, selection of a technology may be based on the intended use population and/or other factors.

Conclusions: Although there are still advancements to be made as well as additional studies to further evaluate the analyte equivalency of capillary and venous specimens, these technologies present a promising patient-centric option to provide clinical results and improve patient care.

背景:尽管最近在以患者为中心的医疗保健世界中实施的毛细血管采血技术取得了进展,但尚未对各种技术进行直接比较。研究设计和方法:采用横断面比较研究方法,招募健康受试者(n = 41),分别采用上臂毛细管采集技术、传统指插采集技术和静脉采集技术进行采集比较研究。用户体验(如疼痛、偏好)、采集性能(如样品量和质量、采集时间)以及不同技术静脉穿刺结果的临床准确性进行比较。此外,通过在收集后的两个不同时间点接触受试者来评估愈合情况。结果:用户体验和收集性能结果因不同的毛细管收集技术而异,单一收集技术在被调查的技术中并没有表现出优势。由于所有技术的相关结果相似,因此技术的选择可能基于预期使用人群和/或其他因素。结论:尽管仍有进展需要进一步评估毛细血管和静脉标本的分析物等效性,但这些技术为提供临床结果和改善患者护理提供了一个有希望的以患者为中心的选择。
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引用次数: 0
Progress in monitoring molecular, cellular and metabolic dynamics using mass spectrometry imaging. 质谱成像技术在分子、细胞和代谢动力学监测中的应用进展。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-10-30 DOI: 10.1080/17576180.2025.2580293
Michael P Gamcsik, Emily R Bruce, David C Muddiman

Mass spectrometry imaging (MSI) enables the visualization of hundreds to thousands of analytes in biological tissues. MSI is also capable of mapping time-dependent processes that, combined with these static metabolite profiles, provides a clearer picture of the molecular underpinnings of tissue function. This perspective is organized into sections demonstrating how MSI-based methods can provide unique functional data on systems ranging from single step enzyme-catalyzed transformations to complex metabolic network activities and cellular dynamics. This multisystem capability can be exploited to provide detailed descriptions of the molecular mechanisms contributing to tissue function. An aspect missing in many studies are corresponding maps of tissue microenvironments including oxygenation and pH which influence functional activities. Some progress has been made to map hypoxic and acidic tissue using MSI methods, but further development is needed. This includes pairing in vivo MSI functional studies to in vitro models. Additionally, integrating the capabilities of other imaging methods, such as magnetic resonance and vibrational spectroscopy, that are proven to detect tissue microenvironments, with dynamic MSI methods offer a route to match environment with functional activities. The combination of static molecular profiles, metabolic and cellular dynamics, and environmental mapping will provide the most detailed understanding of tissue function.

质谱成像(MSI)能够可视化生物组织中数百到数千种分析物。MSI还能够绘制与时间相关的过程,结合这些静态代谢物谱,提供更清晰的组织功能分子基础图像。这个观点被组织成几个部分,展示了基于msi的方法如何提供从单步酶催化转化到复杂代谢网络活动和细胞动力学的系统的独特功能数据。这种多系统的能力可以用来提供对组织功能的分子机制的详细描述。在许多研究中缺少的一个方面是组织微环境的相应图谱,包括影响功能活动的氧合和pH。利用MSI方法绘制缺氧和酸性组织图已经取得了一些进展,但还需要进一步发展。这包括将体内MSI功能研究与体外模型配对。此外,将其他成像方法(如磁共振和振动光谱)的功能与动态MSI方法相结合,可以检测组织微环境,从而提供了将环境与功能活动相匹配的途径。静态分子图谱、代谢和细胞动力学以及环境图谱的结合将提供对组织功能最详细的了解。
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引用次数: 0
Beyond contracts: principles for Pharma-CRO collaboration from the European Bioanalysis Forum. 超越合同:欧洲生物分析论坛的制药- cro合作原则。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-11-06 DOI: 10.1080/17576180.2025.2582422
Philip Timmerman, Matthew Barfield, Lee Goodwin, Iain Love, Kyra Cowan, Lene Anderson, Fabian Gaertner, Michaela Golob, Robert Nelson, Magnus Knutsson

Collaboration between pharmaceutical companies and contract research organizations is central to drug development, yet projects often stumble on well-known weaknesses: communication that does not adapt to the phase of work, expectations that remain unclear, partnerships reduced to transactions, and functions working in silos. Within the European Bioanalysis Forum, two dedicated teams examined these issues in depth, focusing on communication and on building sustainable partnerships. Their reflections were calibrated through dialogue with the wider community during a Focus Workshop, and sharpened by the perspective of the Forum's leadership. This paper brings forward a number of principles that, in the view of the teams and delegates, are essential to more reliable collaboration. They are not an exhaustive list, but a structured starting point for reflection. Reliable collaboration enables science to move forward efficiently and, ultimately, to benefit the patient.

制药公司和合同研究组织之间的合作是药物开发的核心,然而项目经常会遇到众所周知的弱点:不能适应工作阶段的沟通、期望仍然不明确、伙伴关系沦为交易、职能部门各自为营。在欧洲生物分析论坛内,两个专门的小组深入研究了这些问题,重点是沟通和建立可持续的伙伴关系。在焦点研讨会期间,他们通过与更广泛的社区对话调整了他们的想法,并通过论坛领导层的观点使其更加清晰。本文提出了一些原则,在团队和代表看来,这些原则对于更可靠的合作至关重要。它们不是一个详尽的清单,而是一个结构化的反思起点。可靠的合作使科学能够有效地向前发展,并最终使患者受益。
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引用次数: 0
Rethinking validation paradigms for qPCR and dPCR assays in bioanalysis. 重新思考生物分析中qPCR和dPCR检测的验证范式。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-12-03 DOI: 10.1080/17576180.2025.2596573
Amanda L Hays
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引用次数: 0
2025 White Paper on Recent Issues in Bioanalysis: Redosing Patients with AAV Gene Therapy; CRS Immunogenicity Risk; Shedding Assays; NHP Studies Immunogenicity; CMC vs Bioanalytical Assays; Artificial Intelligence-Powered Genomic Pipelines for NGS (PART 3A - Recommendations on Gene, Cell, and Vaccine Therapies Immunogenicity & Technologies; Biotherapeutics & Biosimilars Immunogenicity Assessment & Clinical Relevance PART 3B - Regulatory Agencies' Input on Immunogenicity/Technologies of Biotherapeutics, Gene, Cell & Vaccine Therapies). 2025年生物分析最新问题白皮书:AAV基因治疗患者再给药;CRS免疫原性风险;减少化验;NHP的免疫原性研究CMC与生物分析测定法;人工智能驱动的NGS基因组管道(PART 3A -关于基因、细胞和疫苗疗法免疫原性和技术的建议;生物治疗药物和生物仿制药免疫原性评估和临床相关性PART 3B -监管机构对生物治疗药物、基因、细胞和疫苗疗法免疫原性/技术的投入)
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2026-01-06 DOI: 10.1080/17576180.2025.2586976
Omar Tounekti, Sophie Shubow, Sarah Wassmer, Andrea Van Tuyl, Lin Yang, Binsheng Gong, Mohsen Rajabi Abhari, Warren Kalina, Heather Myler, Jason DelCarpini, David Escobar, Michele Fiscella, Boris Gorovits, Swati Gupta, Susan C Irvin, Chad Irwin, Wojciech Jankowski, Vibha Jawa, Hatice Karauzum, Claire Kerridge, Yanmei Lu, Christian Mayer, Jessica McGregor, Andrew Melton, Rocio Murphy, Jasdeep Nanra, Anna Nowocin, Michael A Partridge, Sandra Prior, Zuben Sauna, Bradley Scott, Jessica Seitzer, Mark Stern, Hiroshi Sugimoto, Melissa Taylor, Adrian Wong, Wenming Xiao, Yuanxin Xu, Tong-Yuan Yang, Daisy Yuill, Robert J Kubiak, Theingi Thway, George Gunn, Ryan Pelto, Giane Sumner, Daniel Baltrukonis, Sanjay L Dholakiya, Shannon Dogmanits, Fabio Garofolo, Maria Jadhav, Daniel Kramer, Erik Meyer, Susovan Mohapatra, Reza Mozaffari, Kun Peng, Samuel Pine, Johann Poetzl, Michele Rasamoelisolo, Weiping Shao, Roland F Staack, Steven Swanson, Atiya Taqui, Stephanie Vauleon, Yun Wang, Yi Wen

The 19th Workshop on Recent Issues in Bioanalysis (19th WRIB) took place in New Orleans, LA, USA on April 7-11, 2025. Over 1200 professionals representing pharma/biotech companies, CROs, and multiple regulatory agencies convened to actively discuss the most current topics of interest in bioanalysis. The 19th WRIB included 3 Main Workshops and 7 Specialized Workshops that together spanned 1 week to allow an exhaustive and thorough coverage of all major issues in bioanalysis of biomarkers, immunogenicity, gene therapy, cell therapy and vaccines.Moreover, in-depth workshops on "Implementation Practice for the Newest ELN/LIMS Systems" and on "Vaccine Cell-Based/Functional & Molecular Assays as part of the harmonization of vaccine clinical assays global initiative" were the special features of the 19th edition.As in previous years, WRIB continued to gather a wide diversity of international, industry opinion leaders and Regulatory Agency experts working on both small and large molecules as well as gene, cell therapies and vaccines to facilitate sharing and discussions focused on improving quality, increasing regulatory compliance, and achieving scientific excellence on bioanalytical issues.This 2025 White Paper encompasses recommendations emerging from the extensive discussions held during the workshop and is aimed to provide the bioanalytical community with key information and practical solutions on topics and issues addressed, in an effort to enable advances in scientific excellence, improved quality and better regulatory compliance. Due to its length, the 2025 edition of this comprehensive White Paper has been divided into three parts for editorial reasons.This publication (Part 3) covers in the Part 3A the recommendations on Gene Therapy, Cell therapy, Vaccines and Biotherapeutics Immunogenicity and in Part 3B the Regulatory Inputs on these topics. Part 1 (Mass Spectrometry Assays and Regulated Bioanalysis/BMV) and Part 2 (Biomarkers/BAV, IVD/CDx, LBA and Cell-Based Assays) are published in volume 18 of Bioanalysis, issues 3 and 2, respectively.

第19届生物分析新问题研讨会(第19届WRIB)于2025年4月7日至11日在美国洛杉矶新奥尔良举行。1200多名代表制药/生物技术公司、cro和多个监管机构的专业人士齐聚一堂,积极讨论生物分析领域最新的热门话题。第19届wrb包括3个主要讲习班和7个专门讲习班,共持续1周,以便对生物标志物生物分析、免疫原性、基因治疗、细胞治疗和疫苗方面的所有主要问题进行详尽和彻底的报道。此外,关于“最新ELN/LIMS系统的实施实践”和“作为统一疫苗临床检测全球倡议一部分的基于疫苗细胞/功能和分子检测”的深入讲习班是第19届会议的特色。与往年一样,wrb继续聚集各种各样的国际、行业意见领袖和监管机构专家,他们致力于小分子和大分子以及基因、细胞疗法和疫苗的研究,以促进分享和讨论,重点是提高质量,提高监管合规性,并在生物分析问题上取得卓越的科学成就。这份2025年白皮书包含了研讨会期间广泛讨论的建议,旨在为生物分析界提供有关主题和问题的关键信息和实用解决方案,以实现科学卓越的进步,提高质量和更好的法规遵从性。由于篇幅太长,出于编辑原因,2025年版白皮书分为三个部分。本出版物(第3部分)在第3A部分涵盖了关于基因治疗、细胞治疗、疫苗和生物治疗免疫原性的建议,在第3B部分涵盖了这些主题的监管投入。第1部分(质谱分析和调节生物分析/BMV)和第2部分(生物标志物/BAV, IVD/CDx, LBA和基于细胞的分析)分别发表在《生物分析》第18卷第3期和第2期。
{"title":"2025 White Paper on Recent Issues in Bioanalysis: Redosing Patients with AAV Gene Therapy; CRS Immunogenicity Risk; Shedding Assays; NHP Studies Immunogenicity; CMC vs Bioanalytical Assays; Artificial Intelligence-Powered Genomic Pipelines for NGS (<u>PART 3A</u> - Recommendations on Gene, Cell, and Vaccine Therapies Immunogenicity & Technologies; Biotherapeutics & Biosimilars Immunogenicity Assessment & Clinical Relevance <u>PART 3B</u> - Regulatory Agencies' Input on Immunogenicity/Technologies of Biotherapeutics, Gene, Cell & Vaccine Therapies).","authors":"Omar Tounekti, Sophie Shubow, Sarah Wassmer, Andrea Van Tuyl, Lin Yang, Binsheng Gong, Mohsen Rajabi Abhari, Warren Kalina, Heather Myler, Jason DelCarpini, David Escobar, Michele Fiscella, Boris Gorovits, Swati Gupta, Susan C Irvin, Chad Irwin, Wojciech Jankowski, Vibha Jawa, Hatice Karauzum, Claire Kerridge, Yanmei Lu, Christian Mayer, Jessica McGregor, Andrew Melton, Rocio Murphy, Jasdeep Nanra, Anna Nowocin, Michael A Partridge, Sandra Prior, Zuben Sauna, Bradley Scott, Jessica Seitzer, Mark Stern, Hiroshi Sugimoto, Melissa Taylor, Adrian Wong, Wenming Xiao, Yuanxin Xu, Tong-Yuan Yang, Daisy Yuill, Robert J Kubiak, Theingi Thway, George Gunn, Ryan Pelto, Giane Sumner, Daniel Baltrukonis, Sanjay L Dholakiya, Shannon Dogmanits, Fabio Garofolo, Maria Jadhav, Daniel Kramer, Erik Meyer, Susovan Mohapatra, Reza Mozaffari, Kun Peng, Samuel Pine, Johann Poetzl, Michele Rasamoelisolo, Weiping Shao, Roland F Staack, Steven Swanson, Atiya Taqui, Stephanie Vauleon, Yun Wang, Yi Wen","doi":"10.1080/17576180.2025.2586976","DOIUrl":"10.1080/17576180.2025.2586976","url":null,"abstract":"<p><p>The 19<sup>th</sup> Workshop on Recent Issues in Bioanalysis (19<sup>th</sup> WRIB) took place in New Orleans, LA, USA on April 7-11, 2025. Over 1200 professionals representing pharma/biotech companies, CROs, and multiple regulatory agencies convened to actively discuss the most current topics of interest in bioanalysis. The 19<sup>th</sup> WRIB included 3 Main Workshops and 7 Specialized Workshops that together spanned 1 week to allow an exhaustive and thorough coverage of all major issues in bioanalysis of biomarkers, immunogenicity, gene therapy, cell therapy and vaccines.Moreover, in-depth workshops on \"Implementation Practice for the Newest ELN/LIMS Systems\" and on \"Vaccine Cell-Based/Functional & Molecular Assays as part of the harmonization of vaccine clinical assays global initiative\" were the special features of the 19<sup>th</sup> edition.As in previous years, WRIB continued to gather a wide diversity of international, industry opinion leaders and Regulatory Agency experts working on both small and large molecules as well as gene, cell therapies and vaccines to facilitate sharing and discussions focused on improving quality, increasing regulatory compliance, and achieving scientific excellence on bioanalytical issues.This 2025 White Paper encompasses recommendations emerging from the extensive discussions held during the workshop and is aimed to provide the bioanalytical community with key information and practical solutions on topics and issues addressed, in an effort to enable advances in scientific excellence, improved quality and better regulatory compliance. Due to its length, the 2025 edition of this comprehensive White Paper has been divided into three parts for editorial reasons.This publication (Part 3) covers in the Part 3A the recommendations on Gene Therapy, Cell therapy, Vaccines and Biotherapeutics Immunogenicity and in Part 3B the Regulatory Inputs on these topics. Part 1 (Mass Spectrometry Assays and Regulated Bioanalysis/BMV) and Part 2 (Biomarkers/BAV, IVD/CDx, LBA and Cell-Based Assays) are published in volume 18 of Bioanalysis, issues 3 and 2, respectively.</p>","PeriodicalId":8797,"journal":{"name":"Bioanalysis","volume":" ","pages":"1365-1409"},"PeriodicalIF":1.8,"publicationDate":"2025-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12785207/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145910024","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
When is a sample a urine sample? Markers for urine sample authenticity assessment in sports drug testing. 什么时候尿样算尿样?运动药物检测中尿样真实性评价的标记物。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-11-07 DOI: 10.1080/17576180.2025.2580273
T Piper, H Geyer, F Huelsemann, U Mareck, K Walpurgis, G Fusshoeller, A Thomas, M Thevis

Human routine doping controls rely to a considerable extent on urine samples, and test methods have been optimized for decades to allow for comprehensive analyses with adequate analytical sensitivities. However, attempts of sample manipulation, presumably in order to escape an adverse analytical finding, were reported to include adulteration as well as substitution, which has revived the debate as to when a sample submitted as urine specimen for sports drug testing purposes is, indeed, to be considered as 'urine.' In consideration of selected case reports as well as analytical parameters routinely acquired with doping control urine samples, options concerning guidance in that context are discussed, as detecting and reporting urine substitution and urine adulteration require laboratory approaches that might differ considerably from protocols applied for, e.g. the confirmation of the presence of a prohibited substance. In particular, commonly monitored markers characterizing urinary specifics such as pH, specific gravity, and the presence of a human urinary steroid profile and 5-aminoimidazole-4-carboxamide ribonucleoside (AICAR) in established reference ranges could assist in defining acceptance criteria for urine samples and, thereby, guidelines when a specimen does not qualify as human urine.

人类常规兴奋剂控制在很大程度上依赖于尿液样本,几十年来,测试方法已经优化,可以进行全面的分析,具有足够的分析灵敏度。然而,据报道,可能是为了逃避不利的分析结果,对样本进行操纵的企图包括掺假和替代,这重新引发了关于作为尿样提交给运动药物检测目的的样本何时确实被视为“尿液”的辩论。考虑到选定的病例报告以及通过兴奋剂控制尿液样本常规获得的分析参数,讨论了这方面的指导方案,因为检测和报告尿液替代和尿液掺假需要的实验室方法可能与所应用的方案有很大不同,例如确认存在违禁物质。特别是,在确定的参考范围内,通常监测表征尿液特征的标志物,如pH值、比重、人类尿液类固醇谱和5-氨基咪唑-4-羧基酰胺核糖核苷(AICAR)的存在,可以帮助确定尿液样本的接受标准,从而在标本不符合人类尿液条件时提供指南。
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引用次数: 0
Development of production methodologies for scFv-Fc conjugated critical reagents to support CAR-T clinical programs. 开发scFv-Fc共轭关键试剂的生产方法,以支持CAR-T临床项目。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-11-14 DOI: 10.1080/17576180.2025.2587001
Ellen O'Connor, Eric Lachacz, Jared Delmar, Bradley D'souza, Samuel Edwards, Christopher Griffin, Rosie Lin, Neil Mody, Alicia Salas, Natalia Schoch-Lopez, Mitali Shah, Ai Shih, Dewald van Dyk, Yueming Xu

Introduction: Routine conjugation protocols are typically used by bioanalytical laboratories for production of their assay critical reagents. Novel molecules can pose unique challenges to the production of high-quality conjugated critical reagents required for clinical bioanalytical assays. Using routine conjugation protocols, we observed gross instability of conjugated-drug surrogate material for use in antidrug antibody (ADA) assays in clinical autologous Chimeric Antigen Receptor (CAR)-T cell programs, thus halting assay development.

Methods: We highlight our approach in developing process conditions for CAR-T supporting conjugated critical reagents, where recombinant CAR scFv-hFc is the surrogate drug material to be conjugated. We show that when routine platform process approaches are not appropriate to produce conjugated novel molecule critical reagents, in-silico modeling can be used to determine conditions imparting repeatable generation of stable reagents. Implementing this modeling is advantageous as it decreases laborious efforts to develop stable novel critical reagent production methodologies.

Conclusion: As a result of these studies herein, optimal stable conjugated critical reagents were produced which enabled successful development and validation of clinical CAR-T ADA assay. This work provides a framework that can be applied to the production of other bioanalytical assay critical reagents when platform conjugation approaches fail.

简介:常规偶联方案通常用于生物分析实验室生产他们的测定关键试剂。新分子对临床生物分析分析所需的高质量共轭关键试剂的生产提出了独特的挑战。使用常规偶联方案,我们观察到在临床自体嵌合抗原受体(CAR)-T细胞项目中用于抗药物抗体(ADA)检测的偶联药物替代材料的总体不稳定性,从而停止了检测的开发。方法:我们重点研究了CAR- t支持缀合关键试剂的工艺条件,其中重组CAR- scFv-hFc是要缀合的替代药物材料。我们表明,当常规的平台工艺方法不适合生产共轭的新型分子临界试剂时,可以使用硅模拟来确定可重复生成稳定试剂的条件。实现这种建模是有利的,因为它减少了开发稳定的新型关键试剂生产方法的艰苦努力。结论:通过这些研究,获得了最优稳定的共轭关键试剂,为CAR-T ADA临床检测的成功开发和验证奠定了基础。当平台偶联方法失败时,这项工作提供了一个框架,可以应用于其他生物分析测定关键试剂的生产。
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引用次数: 0
Nucleic acid nanorobot assay for accurate and simplified ASO quantification in mouse plasma. 核酸纳米机器人法用于小鼠血浆中ASO的精确和简化定量。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-12-09 DOI: 10.1080/17576180.2025.2597181
Åsa Sandelius, Cheryl Arrowsmith, Neil Henderson, Alexander W Jackson

Aim: Pharmacokinetic (PK) characterization and accurate quantification is critical for drug development. The broad potential for antisense oligonucleotide (ASO) drugs to target previously undruggable pathways has resulted in a growing number of ASO therapeutics in development increasing the demand on bioanalysis for PK and safety characterization.

Methods: In this study, a nucleic acid nanorobot (NAN) assay based on toehold mediated strand displacement was for the first time developed for ASO bioanalysis in plasma using a timesaving and simplified 2-step procedure without need for nucleotide extraction. The assay was qualified in two different laboratories to determine precision, accuracy, dilutional linearity, and matrix interferences.

Results: With the ASO driving a programmable cascade of RNA-DNA interaction resulting in release of a fluorophore, the NAN assay generates fluorescent signal proportional to analyte concentration. The assay showed high accuracy and precision across the assay range and high sensitivity. The assay was successfully transferred to a 2nd laboratory, utilizing different equipment and software, providing evidence of assay robustness and accuracy in mouse plasma.

Conclusions: A NAN assay for ASO PK bioanalysis was for the first time assessed for performance and agreement between laboratories, demonstrating this as a viable additional alternative to current bioanalytical methodologies.

目的:药代动力学表征和准确定量对药物开发至关重要。反义寡核苷酸(ASO)药物靶向以前不可药物通路的广泛潜力导致越来越多的ASO治疗药物正在开发中,增加了对PK和安全性表征的生物分析的需求。方法:在本研究中,首次建立了一种基于脚点介导链位移的核酸纳米机器人(NAN)方法,该方法无需提取核苷酸,节省了时间,简化了两步程序,可用于血浆中ASO生物分析。该方法在两个不同的实验室进行了检测,以确定精密度、准确度、稀释线性和基质干扰。结果:由于ASO驱动RNA-DNA相互作用的可编程级联导致荧光团的释放,NAN测定产生与分析物浓度成正比的荧光信号。该方法在整个测定范围内具有较高的准确度和精密度,灵敏度高。利用不同的设备和软件,该实验成功地转移到第二个实验室,提供了在小鼠血浆中检测稳健性和准确性的证据。结论:首次评估了用于ASO PK生物分析的NAN分析的性能和实验室之间的一致性,证明了这是当前生物分析方法的可行替代方案。
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引用次数: 0
MS-DIAL pre-processing for mining schistosomiasis metabolites in urine samples from the Okavango Delta of Botswana from a GC-MS dataset. MS-DIAL预处理从气相色谱-质谱数据集中挖掘博茨瓦纳奥卡万戈三角洲尿液样本中的血吸虫病代谢物。
IF 1.8 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-01 Epub Date: 2025-10-31 DOI: 10.1080/17576180.2025.2580288
Sedireng M Tawana-Ndolo, Matshediso Zachariah, Nthabiseng A Phaladze, Kwenga F Sichilongo

Background: Metabolites were re-mined using MS-DIAL from an SPME dataset preprocessed using AMDIS/Metab R in which data was acquired by GC-MS from schistosomiasis infected (positive) and non-infected (negative)/control samples from school-going children aged between 9 and 12 years in the Okavango Delta region of Botswana. The remining was meant to exhaust scouring for metabolites that could have been overshadowed by Metab R.

Methods: In this study, MS-DIAL open-source freeware was used to preprocess the same dataset to increase the number of identified metabolites and to distinguish positive and control samples.

Results: Ninety-nine (99) metabolites were mined using MS-DIAL in contrast to thirteen identified putatively using Metab R. Both naphthalene and benzophenone, used as surrogate, and internal standards, had greater than 90% match factors using m/z ratios 128 and 105, respectively, for deconvolution with retention time similarity scores of 1000 in all the samples they were added to.

Conclusion: More metabolites were mined using MS-DIAL compared to Metab R thus confirming the preprocessing power of the earlier compared to the latter.

背景:使用MS-DIAL从使用AMDIS/Metab R预处理的SPME数据集中重新挖掘代谢物,其中数据通过GC-MS从博茨瓦纳奥卡万戈三角洲地区9至12岁学龄儿童的血吸虫病感染(阳性)和未感染(阴性)/对照样本中获取。方法:在本研究中,使用MS-DIAL开源免费软件对同一数据集进行预处理,以增加鉴定代谢物的数量,并区分阳性和对照样本。结果:使用MS-DIAL提取了99种代谢物,而使用Metab r推测鉴定了13种代谢物。萘和二苯甲酮作为替代物和内标,分别使用m/z比128和105进行反卷积,其保留时间相似性得分为1000,在所有添加的样品中,匹配因子大于90%。结论:与Metab R相比,MS-DIAL可以挖掘出更多的代谢物,从而证实了MS-DIAL的预处理能力比Metab R强。
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Bioanalysis
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