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Conquering PROTAC molecular design and drugability.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-20 DOI: 10.1080/17576180.2025.2481021
Ritesh P Bhole, Sonali Labhade, Shilendra S Gurav

PROTACs are reshaping drug discovery by enabling targeted protein degradation, overcoming the limitations of traditional inhibitors, and addressing previously "undruggable" proteins. The present perspective explores advancements in PROTAC molecular design, focusing on ligand discovery, E3 ligase recruitment, and ternary complex optimization. Integrating AI-driven modeling, FBDD, and SBDD accelerates PROTAC development. In contrast, emerging innovations, such as PHOTACs, hypoxia-responsive systems, and Ab-PROTACs, enhance precision and reduce systemic toxicity. Clinical successes, including ARV-110 for castration-resistant prostate cancer and ARV-471 for breast cancer, exemplify their ability to overcome resistance and provide durable effects. PROTACs are expanding into neurodegenerative diseases and rare conditions, highlighting their versatility. By addressing challenges in pharmacokinetics, safety, and scalability, PROTACs are poised to revolutionize precision medicine. This article presents a forward-looking perspective on conquering the molecular design and drugability of PROTACs, paving the path for transformative therapies.

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引用次数: 0
Singlicate analysis in ADA assays: comparing assay performance in duplicate and singlicate formats.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-01 Epub Date: 2025-02-11 DOI: 10.1080/17576180.2025.2464421
Zhihua Jiang

Singlicate anti-drug antibody (ADA) analysis is gaining recognition as a promising approach to optimize immunogenicity assessment. It offers significant benefits in terms of cost-effectiveness and aligns with patient-centric principles. However, its successful implementation requires a thorough understanding of its impacts on assay performance. In this perspective, we review recent case studies comparing singlicate and duplicate formats, focusing on cut point factors and sample result agreement, and seek to discuss how singlicate influences assay cut points and explore considerations for low positive control criteria under singlicate conditions. Furthermore, we propose a strategy for implementing singlicate analysis in both new and existing ADA assays, hoping to contribute to ongoing discussions in this area.

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引用次数: 0
The development and evolution of biological AMS at Livermore: a perspective.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-01 Epub Date: 2025-02-04 DOI: 10.1080/17576180.2025.2460391
Graham Bench

Biological accelerator mass spectrometry (AMS) provides ultrasensitive carbon-14 isotopic analysis enabling a deeper understanding of human health concerns by enabling quantification of pharmacokinetics and other molecular endpoints directly in humans. It enables environmentally and human relevant studies of metabolic pathways through the use of very low concentrations of labeled metabolic substrates in cells and organisms. Here, we discuss why AMS is an important tool for the biosciences, the development and evolution of biological AMS at Livermore and discuss technical refinements that will improve the efficiency of operation for the measurement of ultra-trace levels of 14C, which, long term, will enable greater ease of use and sample throughput.

生物加速器质谱(AMS)提供超灵敏的碳-14 同位素分析,可直接对人体的药代动力学和其他分子终点进行量化,从而加深对人类健康问题的了解。通过使用细胞和生物体内极低浓度的标记代谢底物,可以对代谢途径进行与环境和人类相关的研究。在这里,我们将讨论为什么 AMS 是生物科学的重要工具,利弗莫尔生物 AMS 的发展和演变,并讨论技术改进将提高超痕量 14C 测量的操作效率,从长远来看,这将使使用更方便,样品处理量更大。
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引用次数: 0
2024 White Paper on Recent Issues in Bioanalysis: Three Way-Cross Validation; Urine Clinical Analysis; Automated Methods; Regulatory Queries on Plasma Protein Binding; Automated Biospecimen Management; ELN Migration; Ultra-Sensitivity Mass Spectrometry (Part 1A - Recommendations on Advanced Strategies for Mass Spectrometry Assays, Chromatography, Sample Preparation and BMV/Regulated Bioanalysis Part 1B - Regulatory Agencies' Inputs on Regulated Bioanalysis/BMV).
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-01 Epub Date: 2025-01-25 DOI: 10.1080/17576180.2025.2450194
John Wojcik, Timothy Sikorski, Jian Wang, Yue Huang, Hiroshi Sugimoto, Mike Baratta, Eugene Ciccimaro, Rachel Green, Wenying Jian, Sumit Kar, Yeoun Jin Kim, Michael Lassman, Susovan Mohapatra, Mark Qian, Anton I Rosenbaum, Hetal Sarvaiya, Yu Tian, Inna Vainshtein, Long Yuan, Lin Tao, Allena Ji, Christopher Kochansky, Haibo Qiu, Estelle Maes, Lin-Zhi Chen, Megan Cooley, Dawn Dufield, Elizabeth Hyer, Jay Johnson, Wenkui Li, Aihua Liu, Yang Lu, John Meissen, Joe Palandra, Xiaonan Tang, Adam Vigil, Wei Wei, Stephen Vinter, Yongjun Xue, Li Yang, Naiyu Zheng, Kimberly Benson, Fred McCush, Zhenmin Liang, Lee Abberley, Matthew Andisik, Marcela Araya, Seongeun Julia Cho, Liliana Colligan, Arindam Dasgupta, Markus Dudek, Anna Edmison, Sally Fischer, Brian Folian, Fabio Garofolo, Akiko Ishii-Watabe, Dany Ivanova, Sonja Kwadijk-de Gijsel, Lina Luo, Michael McGuinness, Christine O 'Day, Reza Salehzadeh-Asl, João Tavares Neto, Tom Verhaeghe, Katty Wan, Emma Whale, Weili Yan, Eric Yang, Jinhui Zhang

The 18th Workshop on Recent Issues in Bioanalysis (18th WRIB) took place in San Antonio, TX, USA on May 6-10, 2024. Over 1100 professionals representing pharma/biotech companies, CROs, and multiple regulatory agencies convened to actively discuss the most current topics of interest in bioanalysis. The 18th WRIB included 3 Main Workshops and 7 Specialized Workshops that together spanned 1 week to allow an exhaustive and thorough coverage of all major issues in bioanalysis of biomarkers, immunogenicity, gene therapy, cell therapy and vaccines.Moreover, in-depth workshops on "IVDR Implementation in EU & Changes for LDT in the US" and on "Harmonization of Vaccine Clinical Assays Validation" were the special features of the 18th edition.As in previous years, WRIB continued to gather a wide diversity of international, industry opinion leaders and regulatory authority experts working on both small and large molecules as well as gene, cell therapies and vaccines to facilitate sharing and discussions focused on improving quality, increasing regulatory compliance, and achieving scientific excellence on bioanalytical issues.This 2024 White Paper encompasses recommendations emerging from the extensive discussions held during the workshop and is aimed to provide the bioanalytical community with key information and practical solutions on topics and issues addressed, in an effort to enable advances in scientific excellence, improved quality and better regulatory compliance. Due to its length, the 2024 edition of this comprehensive White Paper has been divided into three parts for editorial reasons.This publication (Part 1) covers in Part 1A the Recommendations on Mass Spectrometry Assays and Regulated Bioanalysis/BMV and in Part 1B the Regulatory Inputs on these topics. Part 3 (Gene Therapy, Cell therapy, Vaccines and Biotherapeutics Immunogenicity) and Part 2 (Biomarkers/BAV, IVD/CDx, LBA and Cell-Based Assays) are published in volume 17 of Bioanalysis, issues 3 and 4 (2025), respectively.

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引用次数: 0
The changes necessary in the assessment of immunogenicity for the development of Biosimilars.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-01 Epub Date: 2025-02-03 DOI: 10.1080/17576180.2025.2461373
Johann Poetzl

Immunogenicity knowledge and the analytical capabilities to characterize molecules have evolved within the last decade. This creates opportunities in Biosimilar development by applying new strategies to demonstrate similarity between a proposed Biosimilar to its Reference.Within Immunogenicity Risk Assessment for Biosimilars, in silico and in vitro immunogenicity assessment tools are being evaluated for their utility in Biosimilar development. An ISI including an Immunogenicity Risk Assessment is recommended for Biosimilars within the dossier of licensing applications to facilitate the review by Health Authorities and to explain the immunogenicity in conjunction with analytical and clinical data. Operational aspects should also be considered to refine immunogenicity testing of Biosimilars, e.g. S/N ratio and singlicate sample analysis.

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引用次数: 0
Bioanalytical methods in doping controls: a review.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-01 Epub Date: 2025-02-07 DOI: 10.1080/17576180.2025.2460951
Andreas Thomas, Katja Walpurgis, Nana Naumann, Thomas Piper, Mario Thevis

The analytical and technological approaches employed in doping analysis are constantly reviewed and updated to allow for keeping pace with progresses in pharmaceutical and medicinal research and the therein inherent options of misuse as performance enhancing drugs or methods. Enormous changes, improvements, and developments have been achieved in recent years, particularly, but not exclusively, in the bioanalytical sector. Several of these new strategies are examined systematically in this review using examples from the World Anti-Doping Agency (WADA) list of banned substances and methods. The review includes, among others, the application of sophisticated new in-vitro models mimicking multi compartment models, investigation into new long-term metabolites for anabolic agents, the impact of a distinct gene mutation on the analysis of erythropoietin, studies on the development of new therapeutic protein-based drugs with myostatin inhibiting properties, methods applying the new molecular biological section used to uncover gene doping, and finally new approaches uncovering the prohibited use of autologous blood transfusion. All of these challenges and investigations support the ongoing progress in modern doping controls in the future and will help to fill the gap between the advance of cheating athletes and sport drug testing.

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引用次数: 0
Improved real-world UHPLC-MS/MS iohexol analysis; thawed samples, improved calibration curve, and additional matrices.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-01 Epub Date: 2025-02-07 DOI: 10.1080/17576180.2025.2462429
A Mireille A Wessels, Lenneke A T Junier, Daan Touw, Jasper Stevens

Background: Plasma clearance of iohexol is used to measure glomerular filtration rate, for which a UHPLC-MS/MS analytical method was previously developed. In real-world conditions, samples may be thawed on arrival and sampled in unvalidated matrices, prompting the need for an improved validation. We aim to improve the method for iohexol determination in plasma with enhanced stability testing, optimized calibration curves, and partial validation in additional matrices.

Methods: Stability testing was conducted up to 9 weeks at room temperature, 4°C, 37°C, and at 37°C with daily two-hour exposure to 55°C. Quintuplicate QC samples were analyzed on 3 days, comparing results from eight-point and two-point calibration curves. Matrix comparison was performed on quintuplicate QC samples in serum, heparin plasma, urine, EDTA whole blood, and heparin whole blood.

Results: The method improvements were all compliant with the requirements for bioanalytical methods issued by the US FDA and European Medicines Agency.

Conclusion: Human EDTA plasma samples can be stored up to 9 weeks at room temperature, 4°C, 37°C, and 37°C with 55°C daily temperature spikes. The samples can be analyzed using a two-point calibration curve and are partial validated for serum-, heparin plasma-, urine-, EDTA whole blood-, and lithium whole blood iohexol samples.

{"title":"Improved real-world UHPLC-MS/MS iohexol analysis; thawed samples, improved calibration curve, and additional matrices.","authors":"A Mireille A Wessels, Lenneke A T Junier, Daan Touw, Jasper Stevens","doi":"10.1080/17576180.2025.2462429","DOIUrl":"10.1080/17576180.2025.2462429","url":null,"abstract":"<p><strong>Background: </strong>Plasma clearance of iohexol is used to measure glomerular filtration rate, for which a UHPLC-MS/MS analytical method was previously developed. In real-world conditions, samples may be thawed on arrival and sampled in unvalidated matrices, prompting the need for an improved validation. We aim to improve the method for iohexol determination in plasma with enhanced stability testing, optimized calibration curves, and partial validation in additional matrices.</p><p><strong>Methods: </strong>Stability testing was conducted up to 9 weeks at room temperature, 4°C, 37°C, and at 37°C with daily two-hour exposure to 55°C. Quintuplicate QC samples were analyzed on 3 days, comparing results from eight-point and two-point calibration curves. Matrix comparison was performed on quintuplicate QC samples in serum, heparin plasma, urine, EDTA whole blood, and heparin whole blood.</p><p><strong>Results: </strong>The method improvements were all compliant with the requirements for bioanalytical methods issued by the US FDA and European Medicines Agency.</p><p><strong>Conclusion: </strong>Human EDTA plasma samples can be stored up to 9 weeks at room temperature, 4°C, 37°C, and 37°C with 55°C daily temperature spikes. The samples can be analyzed using a two-point calibration curve and are partial validated for serum-, heparin plasma-, urine-, EDTA whole blood-, and lithium whole blood iohexol samples.</p>","PeriodicalId":8797,"journal":{"name":"Bioanalysis","volume":" ","pages":"339-343"},"PeriodicalIF":1.9,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11875483/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143363537","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecularly imprinted polymer-based paper spray ionization mass spectrometry: shaping the future of bioanalysis.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-26 DOI: 10.1080/17576180.2025.2472735
Almir Custodio Batista Junior, Lanaia Ítala Louzeiro Maciel, Yuri Arrates Rocha, João Victor Borges Assis, Andrea Rodrigues Chaves
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引用次数: 0
Feedback from a workshop by the European Bioanalysis Forum on assay validation requirements for in vitro assays following the publication of ICH M12 guideline - a plea for context-of-use over ICH M10 standards.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-21 DOI: 10.1080/17576180.2025.2468596
Philip Timmerman, Steve White, Neil Adcock, Cecilia Arfvidsson, Matthew Barfield, Kyra Cowan, Luca Ferrari, Michaela Golob, Lee Goodwin, Richard Hughes, Tsvetelina Ivanova, Anna Laurén, Stuart McDougall, Robert Nelson, Nico van de Merbel, Tom Verhaeghe, Michael Wright

The release of the ICH M12 Guideline on Drug Interaction Studies has reignited discussions around assay validation requirements for in vitro assays such as plasma protein-binding studies. Even though the ICH M12 does not directly reference the ICH M10 Guideline on Bioanalytical Method Validation and Sample Analysis, its release prompted further discussions on assay validation requirements for these studies during the 17th European Bioanalysis Forum Open Symposium held in Barcelona, Spain, from 19 to 21 November 2024, where we advocated for a Context-of-Use driven approach over rigid adherence to ICH M10 standards. Context-of-Use driven validation ensures assays are tailored to the specific scientific and regulatory needs, optimizing resource allocation and innovation in drug development. This short opinion paper explores the potential and undesired implications of ICH M12 on bioanalytical validation practices, highlights the distinction between exploratory assays and assays having a clinical impact, and underscores the necessity for tailored validation strategies.

ICH M12《药物相互作用研究指南》的发布再次引发了对血浆蛋白结合研究等体外检测的检测验证要求的讨论。尽管 ICH M12 并未直接参考《生物分析方法验证和样品分析 ICH M10 指南》,但它的发布还是在 2024 年 11 月 19-21 日于西班牙巴塞罗那举行的第 17 届欧洲生物分析论坛公开研讨会上引发了有关这些研究的检测验证要求的进一步讨论。以使用情境为导向的验证可确保测定符合特定的科学和监管需求,优化药物开发的资源分配和创新。这篇观点短文探讨了 ICH M12 对生物分析验证实践的潜在和不良影响,强调了探索性测定与具有临床影响的测定之间的区别,并强调了定制验证策略的必要性。
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引用次数: 0
Patient-centric clinical trials: collaboration and innovation in bioanalytical and clinical operations.
IF 1.9 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-01 Epub Date: 2025-01-30 DOI: 10.1080/17576180.2025.2458453
Saloumeh K Fischer
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引用次数: 0
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Bioanalysis
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