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Annotating Spike Protein Polymorphic Amino Acids of Variants of SARS-CoV-2, Including Omicron 包括奥密克戎在内的严重急性呼吸系统综合征冠状病毒2型变体的刺突蛋白多态性氨基酸注释
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-04-11 DOI: 10.1155/2022/2164749
G. N. Mahardika, Nyoman B Mahendra, B. K. Mahardika, I. Suardana, M. Pharmawati
The prolonged global spread and community transmission of severe acute respiratory syndrome virus 2 (SARS-CoV-2) has led to the emergence of variants and brought questions regarding disease severity and vaccine effectiveness. We conducted simple bioinformatics on the spike gene of a representative of each variant. The data show that a number of polymorphic amino acids are located mostly on the amino-terminal side of the S1/S2 cleavage site. The Omicron variant diverges from the others, with the highest number of amino acid substitutions, including the receptor-binding site (RBS), epitopes, S1/S2 cleavage site, fusion peptide, and heptad repeat 1. The current sharp global increase in the frequency of the Omicron genome constitutes evidence of its high community transmissibility. In conclusion, the proposed guideline could give an immediate insight of the probable biological nature of any variant of SARS-Cov-2. As the Omicron diverged the farthest from the original pandemic strain, Wuhan-Hu-1, we expect different epidemiological and clinical patterns of Omicron cases. On vaccine efficacy, slight changes in some epitopes while others are conserved should not lead to a significant reduction in the effectiveness of an approved vaccine.
严重急性呼吸综合征2型病毒(严重急性呼吸系统综合征冠状病毒2型)的长期全球传播和社区传播导致了变种的出现,并带来了有关疾病严重性和疫苗有效性的问题。我们对每个变体的代表性刺突基因进行了简单的生物信息学研究。数据显示,许多多态性氨基酸主要位于S1/S2切割位点的氨基末端侧。奥密克戎变体与其他变体不同,具有最高数量的氨基酸取代,包括受体结合位点(RBS)、表位、S1/S2切割位点、融合肽和七肽重复序列1。目前全球奥密克戎基因组频率的急剧上升证明了其高度的社区传播性。总之,拟议的指南可以立即了解严重急性呼吸系统综合征冠状病毒2型任何变体的可能生物学性质。由于奥密克戎与最初的流行毒株武汉胡1变异最远,我们预计奥密克龙病例的流行病学和临床模式会有所不同。在疫苗效力方面,一些表位的微小变化,而另一些表位是保守的,不应导致批准疫苗的效力显著降低。
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引用次数: 1
Synthesis of Benzimidazole-Sulfonyl Derivatives and Their Biological Activities. 苯并咪唑-磺酰基衍生物的合成及其生物活性
IF 3.4 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2022-04-05 eCollection Date: 2022-01-01 DOI: 10.1155/2022/7255299
Endale Mulugeta, Yoseph Samuel

Currently, the synthesis of new compounds with potential bioactivities has become a central issue in the drug discovery arena. Among these new compounds, benzimidazole-sulfonyl scaffolds have vital applications in the fields of pharmaceuticals industries. Benzimidazole and sulfonyl compounds have remarkable biological activities, such as antibacterial, antifungal, anti-inflammatory, antiproliferative, carbonic anhydrase inhibitory, and α-amylase inhibitory activities. Furthermore, recent literature mentions the synthesis and bioactivities of some benzimidazole-sulfonyl hybrids. In this review, we focus on reviewing the synthesis of these hybrid scaffolds and their various types of biological activities of the compounds.

目前,合成具有潜在生物活性的新化合物已成为药物发现领域的核心问题。在这些新化合物中,苯并咪唑磺酰基支架在制药工业领域有着重要的应用。苯并咪唑和磺酰基化合物具有显著的生物活性,如抗菌、抗真菌、抗炎、抗增殖、抑制碳酸酐酶和抑制α-淀粉酶的活性。此外,最近的文献提到了一些苯并咪唑磺酰基杂化物的合成和生物活性。在这篇综述中,我们重点综述了这些杂化支架的合成及其化合物的各种生物活性。
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引用次数: 0
Retracted: Exploring Drug Targets in Isoprenoid Biosynthetic Pathway for Plasmodium falciparum 撤回:探索恶性疟原虫异丙肾上腺素生物合成途径中的药物靶点
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-03-15 DOI: 10.1155/2022/8426183
Biochemistry Research International
[This retracts the article DOI: 10.1155/2014/657189.].
[本文撤回文章DOI: 10.1155/2014/657189]。
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引用次数: 0
The Stability Improvement of Aspergillus fumigatus α-Amylase by Immobilization onto Chitin-Bentonite Hybrid. 几丁质-膨润土杂化固定化提高烟曲霉α-淀粉酶的稳定性。
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-03-14 eCollection Date: 2022-01-01 DOI: 10.1155/2022/5692438
Ezra Rheinsky Tiarsa, Yandri Yandri, Tati Suhartati, Heri Satria, Bambang Irawan, Sutopo Hadi

Enzyme immobilization is a powerful method to improve the stability, reuse, and enzymatic properties of enzymes. The immobilization of the α-amylase enzyme from Aspergillus fumigatus on a chitin-bentonite (CB) hybrid has been studied to improve its stability. Therefore, this study aims to obtain the higher stability of α-amylase enzyme to reduce industrial costs. The procedures were performed as follows: production, isolation, partial purification, immobilization, and characterization of the free and immobilized enzymes. The CB hybrid was synthesized by bentonite, chitin, and glutaraldehyde as a cross-linker. The free enzyme was immobilized onto CB hybrid using 0.1 M phosphate buffer pH 7.5. The free and immobilized enzymes were characterized by optimum temperature, Michaelis constant (K M), maximum velocity (V max), thermal inactivation rate constant (k i ), half-life (t 1/2), and transformation of free energy because of denaturation (ΔG i ). The free enzyme has optimum temperature of 55°C, K M  = 3.04 mg mL-1 substrate, V max=10.90 μmolemL-1min-1, k i  = 0.0171 min-1, t 1/2 = 40.53 min, and ΔG i  = 104.47 kJ mole-1. Meanwhile, the immobilized enzyme has optimum temperature of 60°C, K M  = 11.57 mg mL-1 substrate, V max=3.37 μmolemL-1min-1, k i  = 0.0045 min-1, t 1/2 = 154.00 min, and ΔG i  = 108.17 kJ mole-1. After sixth cycle of reuse, the residual activity of the immobilized enzyme was 38%. The improvement in the stability of α-amylase immobilized on the CB hybrid based on the increase in half-life was four times of the free enzyme.

酶固定化是提高酶的稳定性、可重复利用性和酶学性能的一种有效方法。为提高烟曲霉α-淀粉酶的稳定性,研究了几丁质膨润土(CB)复合材料对烟曲霉α-淀粉酶的固定化作用。因此,本研究旨在获得更高稳定性的α-淀粉酶,以降低工业成本。步骤如下:游离酶和固定化酶的生产、分离、部分纯化、固定化和表征。以膨润土、几丁质和戊二醛为交联剂合成了炭黑杂化物。用0.1 M pH 7.5的磷酸缓冲液将游离酶固定在CB杂交体上。通过最适温度、Michaelis常数(K M)、最大速度(V max)、热失活速率常数(K i)、半衰期(t1 /2)和变性自由能转化(ΔG i)对游离酶和固定化酶进行表征。游离酶的最适温度为55℃,km = 3.04 mg mL-1底物,vmax =10.90 μmolemL-1min-1, ki = 0.0171 min-1, t1 /2 = 40.53 min, ΔG i = 104.47 kJ mol -1。同时,固定化酶的最适温度为60℃,km = 11.57 mg mL-1底物,vmax =3.37 μmolemL-1min-1, ki = 0.0045 min-1, t1 /2 = 154.00 min, ΔG i = 108.17 kJ mol -1。6次循环后,固定化酶的剩余活性为38%。α-淀粉酶固定化后的半衰期增加,其稳定性的提高是游离酶的4倍。
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引用次数: 9
Diets Rich in Olive Oil, Palm Oil, or Lard Alter Mitochondrial Biogenesis and Mitochondrial Membrane Composition in Rat Liver 富含橄榄油、棕榈油或猪油的饮食改变大鼠肝脏线粒体生物发生和线粒体膜组成
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-02-21 DOI: 10.1155/2022/9394356
Y. F. Djohan, M. Camara-Cissé, G. Fouret, B. Bonafos, B. Jover, J. Cristol, C. Coudray, C. Feillet-Coudray, É. Badia
Palm oil (crude or refined) and lard are rich in SFA, while olive oil is rich in polyunsaturated fatty acids. SFA are considered harmful to health, while polyunsaturated fatty acids are beneficial to health. The aim of this study was to determine the effect of diets rich in crude PO, refined PO, OO, or lard on the mitochondrial membrane, the activity of mitochondrial respiratory chain complexes, and mitochondrial biogenesis. This was an experimental study in male Wistar rats fed a diet containing 30% of each oil. Rats had free access to food and water. After being fed for 12 weeks, animals were sacrificed and liver mitochondria were collected. This collection was used to determine membrane potential and ROS production, membrane phospholipid and fatty acid composition, citrate synthase activity and respiratory chain complex, cardiolipin synthase protein expression, and expression of selected genes involved in mitochondrial biogenesis. We found that diets rich in olive oil, palm oil, or lard altered mitochondrial biogenesis by significantly decreasing Pgc1α gene expression and altered the fatty acid composition of rat liver mitochondrial membrane PL.
棕榈油(原油或精炼)和猪油富含SFA,而橄榄油富含多不饱和脂肪酸。SFA被认为对健康有害,而多不饱和脂肪酸则对健康有益。本研究的目的是确定饲粮中富含粗PO、精制PO、OO或猪油对线粒体膜、线粒体呼吸链复合物活性和线粒体生物发生的影响。这是一项实验研究,雄性Wistar大鼠喂食含有每种油30%的食物。老鼠可以自由获取食物和水。饲养12周后处死动物,收集肝脏线粒体。这些收集物用于测定膜电位和ROS生成、膜磷脂和脂肪酸组成、柠檬酸合成酶活性和呼吸链复合体、心磷脂合成酶蛋白表达以及参与线粒体生物发生的选定基因的表达。我们发现,富含橄榄油、棕榈油或猪油的饮食通过显著降低Pgc1α基因表达和改变大鼠肝脏线粒体膜PL的脂肪酸组成来改变线粒体生物发生。
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引用次数: 2
Antidiarrheal and Antisecretory Effect of 80% Hydromethanolic Leaf Extract of Moringa stenopetala Baker f. in Mice. 辣木叶80%氢甲醇提取物对小鼠的止泻和抗分泌作用。
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-30 eCollection Date: 2022-01-01 DOI: 10.1155/2022/5768805
Menbere Getaneh Woldeyohannes, Gelila Tamyalew Eshete, Alfoalem Araba Abiye, Abebe Ejigu Hailu, Solomon Assefa Huluka, Wondmagegn Tamiru Tadesse

Introduction: In Ethiopia, different medicinal plants have been claimed and used to treat diarrheal diseases. However, these claimed effects for most medicinal plants have not been scientifically verified. One of such plants in Ethiopian folkloric medicine is Moringa stenopetala, which is usually consumed as a vegetable in southern Ethiopia. Thus, this study aimed to evaluate the antidiarrheal and antisecretory effects of 80% methanolic leaf extract of Moringa stenopetala in different mice models.

Method: Using Swiss albino mice, castor oil-induced diarrhea, charcoal meal-based gastrointestinal motility, and castor oil-induced secretion models were employed to assess antidiarrheal activity. In all of the test models, animals were randomly assigned into five groups consisting of six animals in each group. Group I received 0.5 ml of the vehicle (2% tween-80), while group II was treated with standard drug (3 mg/kg loperamide) in the respective models, whereas groups III to V received 150, 300, and 450 mg/kg of the methanolic leaf extracts of Moringa stenopetala. Onset, frequency, consistency, and weight of stool (diarrhea) were recorded, and different parameters and percentage proportions were calculated. Data were analyzed using one-way ANOVA followed by Tukey's test, and p < 0.05 was considered statistically significant at 95% confidence of interval.

Result: In the castor oil-induced diarrheal model, the percentage inhibition of diarrhea was 48.5, 58.6, and 60% for the respective doses of 150, 300, and 450 mg/kg of the extract. And, the extract showed a 36.8, 54.4, and 55.9% reduction of peristalsis in charcoal meal-based gastrointestinal motility test compared to the negative control group. Moreover, in the antisecretory assay, the 150, 300, and 450 mg/kg doses of MEMS inhibited fluid contents of the stool by 11.5, 54.54, and 61.82%, respectively, relative to the vehicle-treated group.

Conclusion: The findings revealed that the 80% methanolic leaf extract of Moringa stenopetala extract has shown antidiarrheal activity.

简介:在埃塞俄比亚,不同的药用植物已被声称和用于治疗腹泻疾病。然而,这些声称对大多数药用植物的作用尚未得到科学证实。在埃塞俄比亚民间医学中,这种植物之一是辣木(Moringa stenopetala),在埃塞俄比亚南部通常被当作蔬菜食用。因此,本研究旨在评价辣木叶80%甲醇提取物在不同小鼠模型上的止泻和抗分泌作用。方法:采用蓖麻油致腹泻模型、炭粉胃肠运动模型和蓖麻油致分泌模型对瑞士白化小鼠的止泻作用进行评价。在所有的试验模型中,动物被随机分为五组,每组6只动物。ⅰ组给药0.5 ml(2% ~ 80),ⅱ组给药标准药物(洛哌丁胺3 mg/kg),ⅲ~ V组给药辣木叶甲醇提取物150、300、450 mg/kg。记录大便(腹泻)的发病、次数、稠度和重量,并计算不同参数和百分比比例。结果:在蓖麻油致腹泻模型中,150mg /kg、300mg /kg和450mg /kg蓖麻油提取物对腹泻的抑制率分别为48.5、58.6%和60%。与阴性对照组相比,炭粉提取物在以炭粉为基础的胃肠运动测试中显示出36.8%、54.4和55.9%的蠕动减少。此外,在抗分泌试验中,150、300和450 mg/kg剂量的MEMS对粪便液体含量的抑制作用分别比载体处理组高11.5%、54.54%和61.82%。结论:辣木叶80%甲醇提取物具有止泻作用。
{"title":"Antidiarrheal and Antisecretory Effect of 80% Hydromethanolic Leaf Extract of <i>Moringa stenopetala</i> Baker f. in Mice.","authors":"Menbere Getaneh Woldeyohannes,&nbsp;Gelila Tamyalew Eshete,&nbsp;Alfoalem Araba Abiye,&nbsp;Abebe Ejigu Hailu,&nbsp;Solomon Assefa Huluka,&nbsp;Wondmagegn Tamiru Tadesse","doi":"10.1155/2022/5768805","DOIUrl":"https://doi.org/10.1155/2022/5768805","url":null,"abstract":"<p><strong>Introduction: </strong>In Ethiopia, different medicinal plants have been claimed and used to treat diarrheal diseases. However, these claimed effects for most medicinal plants have not been scientifically verified. One of such plants in Ethiopian folkloric medicine is <i>Moringa stenopetala,</i> which is usually consumed as a vegetable in southern Ethiopia. Thus, this study aimed to evaluate the antidiarrheal and antisecretory effects of 80% methanolic leaf extract of <i>Moringa stenopetala</i> in different mice models.</p><p><strong>Method: </strong>Using Swiss albino mice, castor oil-induced diarrhea, charcoal meal-based gastrointestinal motility, and castor oil-induced secretion models were employed to assess antidiarrheal activity. In all of the test models, animals were randomly assigned into five groups consisting of six animals in each group. Group I received 0.5 ml of the vehicle (2% tween-80), while group II was treated with standard drug (3 mg/kg loperamide) in the respective models, whereas groups III to V received 150, 300, and 450 mg/kg of the methanolic leaf extracts of <i>Moringa stenopetala</i>. Onset, frequency, consistency, and weight of stool (diarrhea) were recorded, and different parameters and percentage proportions were calculated. Data were analyzed using one-way ANOVA followed by Tukey's test, and <i>p</i> < 0.05 was considered statistically significant at 95% confidence of interval.</p><p><strong>Result: </strong>In the castor oil-induced diarrheal model, the percentage inhibition of diarrhea was 48.5, 58.6, and 60% for the respective doses of 150, 300, and 450 mg/kg of the extract. And, the extract showed a 36.8, 54.4, and 55.9% reduction of peristalsis in charcoal meal-based gastrointestinal motility test compared to the negative control group. Moreover, in the antisecretory assay, the 150, 300, and 450 mg/kg doses of MEMS inhibited fluid contents of the stool by 11.5, 54.54, and 61.82%, respectively, relative to the vehicle-treated group.</p><p><strong>Conclusion: </strong>The findings revealed that the 80% methanolic leaf extract of <i>Moringa stenopetala</i> extract has shown antidiarrheal activity.</p>","PeriodicalId":8826,"journal":{"name":"Biochemistry Research International","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2022-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8818423/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39609482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
The Stability Improvement of α-Amylase Enzyme from Aspergillus fumigatus by Immobilization on a Bentonite Matrix. 膨润土固定化法提高烟曲霉α-淀粉酶的稳定性。
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 eCollection Date: 2022-01-01 DOI: 10.1155/2022/3797629
Yandri Yandri, Ezra Rheinsky Tiarsa, Tati Suhartati, Heri Satria, Bambang Irawan, Sutopo Hadi

The stability of the α-amylase enzyme has been improved from Aspergillus fumigatus using the immobilization method on a bentonite matrix. Therefore, this study aims to obtain the higher stability of α-amylase enzyme from A. fumigatus; hence, it is used repeatedly to reduce industrial costs. The procedures involved enzyme production, isolation, partial purification, immobilization, and characterization. Furthermore, the soluble enzyme was immobilized using 0.1 M phosphate buffer of pH 7.5 on a bentonite matrix, after which it was characterized with the following parameters such as optimum temperature, Michaelis constant (K M ), maximum velocity (V max), thermal inactivation rate constant (k i), half-life (t 1/2), and the change of energy due to denaturation (ΔG i ). The results showed that the soluble enzyme has an optimum temperature of 55°C, K M of 3.04 mg mL-1 substrate, V max of 10.90 μmole mL-1 min-1, k i of 0.0171 min-1, t1/2 of 40.53 min, and ΔG i of 104.47 kJ mole-1, while the immobilized enzyme has an optimum temperature of 70°C, K M of 8.31 mg mL-1 substrate, V max of 1.44 μmole mL-1 min-1, k i of 0.0060 min-1, t 1/2 of 115.50 min, and ΔG i of 107.37 kJ mole-1. Considering the results, the immobilized enzyme retained 42% of its residual activity after six reuse cycles. Additionally, the stability improvement of the α-amylase enzyme by immobilization on a bentonite matrix, based on the increase in half-life, was three times greater than the soluble enzyme.

采用膨润土固定化法,提高了烟曲霉α-淀粉酶的稳定性。因此,本研究旨在获得烟曲霉α-淀粉酶较高的稳定性;因此,它被反复使用以降低工业成本。过程包括酶的生产、分离、部分纯化、固定化和表征。采用pH为7.5的0.1 M磷酸盐缓冲液在膨润土基质上固定化酶,用最佳温度、Michaelis常数(K M)、最大速度(V max)、热失活速率常数(K i)、半衰期(t1 /2)和变性能变化(ΔG i)等参数对酶进行表征。结果表明,可溶性酶的最适温度为55°C, K M 3.04毫克mL-1衬底,V max 10.90μ摩尔mL-1最低为1,我0.0171最低为1 K, t1/2 40.53分钟,104.47 kJ mole-1ΔG,而固定化酶的最适温度为70°C, K M 8.31毫克mL-1衬底,V max 1.44μ摩尔mL-1最低为1,我0.0060最低为1 K,半衰期为115.50分钟,ΔG我107.37 kJ mole-1。结果表明,固定化酶在重复使用6次后仍保持42%的剩余活性。此外,基于半衰期的增加,固定在膨润土基质上的α-淀粉酶的稳定性提高是可溶性酶的3倍。
{"title":"The Stability Improvement of <i>α</i>-Amylase Enzyme from <i>Aspergillus fumigatus</i> by Immobilization on a Bentonite Matrix.","authors":"Yandri Yandri,&nbsp;Ezra Rheinsky Tiarsa,&nbsp;Tati Suhartati,&nbsp;Heri Satria,&nbsp;Bambang Irawan,&nbsp;Sutopo Hadi","doi":"10.1155/2022/3797629","DOIUrl":"https://doi.org/10.1155/2022/3797629","url":null,"abstract":"<p><p>The stability of the <i>α</i>-amylase enzyme has been improved from <i>Aspergillus fumigatus</i> using the immobilization method on a bentonite matrix. Therefore, this study aims to obtain the higher stability of <i>α</i>-amylase enzyme from <i>A. fumigatus</i>; hence, it is used repeatedly to reduce industrial costs. The procedures involved enzyme production, isolation, partial purification, immobilization, and characterization. Furthermore, the soluble enzyme was immobilized using 0.1 M phosphate buffer of pH 7.5 on a bentonite matrix, after which it was characterized with the following parameters such as optimum temperature, Michaelis constant (<i>K</i> <sub><i>M</i></sub> ), maximum velocity (<i>V</i> <sub>max</sub>), thermal inactivation rate constant (<i>k</i> <sub>i</sub>), half-life (<i>t</i> <sub>1/2</sub>), and the change of energy due to denaturation (Δ<i>G</i> <sub><i>i</i></sub> ). The results showed that the soluble enzyme has an optimum temperature of 55°C, <i>K</i> <sub><i>M</i></sub> of 3.04 mg mL<sup>-1</sup> substrate, <i>V</i> <sub>max</sub> of 10.90 <i>μ</i>mole mL<sup>-1</sup> min<sup>-1</sup>, <i>k</i> <sub>i</sub> of 0.0171 min<sup>-1</sup>, t<sub>1/2</sub> of 40.53 min, and Δ<i>G</i> <sub><i>i</i></sub> of 104.47 kJ mole<sup>-1</sup>, while the immobilized enzyme has an optimum temperature of 70°C, <i>K</i> <sub><i>M</i></sub> of 8.31 mg mL<sup>-1</sup> substrate, <i>V</i> <sub>max</sub> of 1.44 <i>μ</i>mole mL<sup>-1</sup> min<sup>-1</sup>, <i>k</i> <sub>i</sub> of 0.0060 min<sup>-1</sup>, <i>t</i> <sub>1/2</sub> of 115.50 min, and Δ<i>G</i> <sub><i>i</i></sub> of 107.37 kJ mole<sup>-1</sup>. Considering the results, the immobilized enzyme retained 42% of its residual activity after six reuse cycles. Additionally, the stability improvement of the <i>α</i>-amylase enzyme by immobilization on a bentonite matrix, based on the increase in half-life, was three times greater than the soluble enzyme.</p>","PeriodicalId":8826,"journal":{"name":"Biochemistry Research International","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2022-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8763562/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39834057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Comparative Study of Abiotic Stress Factors on GC-MS-Detected Phytoconstituents of Aloe greatheadii var: davyana Using Heat Map and Hierarchical Clustering Dendrogram. 利用热图和分层聚类树形图对比分析气相色谱-质谱法检测芦荟植物成分的非生物胁迫因素。
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-05 eCollection Date: 2022-01-01 DOI: 10.1155/2022/5365024
Denga Nthai, Vuyisile Samuel Thibane, Sechene Stanley Gololo

Aloe greatheadii var. davyana or spotted aloe is indigenous to South Africa and widely distributed in the northern provinces. The plant has a vast ethnopharmacological application which is mostly attributed to its phytochemical content. The aim of the study was to examine the effect of abiotic stress factors on the plant's phytochemical content. The phytochemical content of A. greatheadii hexane extracts from four different provinces (Limpopo, Mpumalanga, Gauteng, and North West), harvested from the wild at varied altitudes, rainfall patterns, and soil types, was examined using gas chromatography-mass spectra (GC-MS). The phytochemical content of hexane extracts from the four South African provinces was analysed using heat map analysis and hierarchical clustering dendrogram. The phytochemical content of A. greatheadii hexane extracts was composed of fatty acids, alkanes, benzene, carboxylic acids, ketones, phytosterols, and vitamins. Eicosane, henicosane, and [(2S)-2-[(2R)-4-hexadecanoyloxy-3-hydroxy-5-oxo-2H-furan-2-yl]-2-hydroxyethyl] hexadecanoate were the only compounds detected in all samples from the four provinces. The concentration levels of 2-(((2-ethylhexyl)oxy)carbonyl) benzoic acid, beta-sitosterol, tritetracontane, and ethyl 13-methyltetradecanoate were closely related and expressed a low clustering distance amongst the samples. Variations in soil pH, soil type, and rainfall patterns were detected and differed in the four provinces. The different abiotic stress factors affected the biochemical pathways for the different compounds, with conditions in Gauteng being less favourable for many of the compounds detected. Abiotic stress factors have shown to influence phytochemical biochemical pathways and quantity. Aloe greatheadii plants can be selected based on location seemingly due to the variations that persist in their phytochemical content.

芦荟(Aloe greatatheadii var. davyana)或斑点芦荟原产于南非,广泛分布于北部省份。该植物具有广泛的民族药理学应用,这主要归功于其植物化学成分。本研究的目的是研究非生物胁迫因素对植物化学成分含量的影响。采用气相色谱-质谱(GC-MS)分析了林波波省、姆普马兰加省、豪登省和西北省4个不同海拔、降雨模式和土壤类型的野外采收的大刺蒿己烷提取物的植物化学成分。利用热图分析和分层聚类树形图分析了南非四省己烷提取物的植物化学成分。荆芥己烷提取物的植物化学成分主要由脂肪酸、烷烃、苯、羧酸、酮类、植物甾醇和维生素组成。四省所有样品中仅检出[(2S)-2-[(2S)- 4-十六烷氧基-3-羟基-5-氧基- 2h -呋喃-2-基]-2-羟乙基]十六烷酸酯。2-((2-乙基己基)氧羰基)苯甲酸、β -谷甾醇、三硝基康烷和13-甲基十四酸乙酯的浓度水平密切相关,且在样品之间表现出较低的聚类距离。土壤pH值、土壤类型和降雨模式在4个省均存在差异。不同的非生物胁迫因素影响了不同化合物的生化途径,豪登省的条件对许多检测到的化合物不太有利。非生物胁迫因子已显示出对植物化学生化途径和数量的影响。芦荟植物可以根据地理位置进行选择,这似乎是由于它们的植物化学成分持续存在变化。
{"title":"Comparative Study of Abiotic Stress Factors on GC-MS-Detected Phytoconstituents of <i>Aloe greatheadii</i> var: davyana Using Heat Map and Hierarchical Clustering Dendrogram.","authors":"Denga Nthai,&nbsp;Vuyisile Samuel Thibane,&nbsp;Sechene Stanley Gololo","doi":"10.1155/2022/5365024","DOIUrl":"https://doi.org/10.1155/2022/5365024","url":null,"abstract":"<p><p><i>Aloe greatheadii</i> var. davyana or spotted aloe is indigenous to South Africa and widely distributed in the northern provinces. The plant has a vast ethnopharmacological application which is mostly attributed to its phytochemical content. The aim of the study was to examine the effect of abiotic stress factors on the plant's phytochemical content. The phytochemical content of <i>A. greatheadii</i> hexane extracts from four different provinces (Limpopo, Mpumalanga, Gauteng, and North West), harvested from the wild at varied altitudes, rainfall patterns, and soil types, was examined using gas chromatography-mass spectra (GC-MS). The phytochemical content of hexane extracts from the four South African provinces was analysed using heat map analysis and hierarchical clustering dendrogram. The phytochemical content of <i>A. greatheadii</i> hexane extracts was composed of fatty acids, alkanes, benzene, carboxylic acids, ketones, phytosterols, and vitamins. Eicosane, henicosane, and [(2S)-2-[(2R)-4-hexadecanoyloxy-3-hydroxy-5-oxo-2H-furan-2-yl]-2-hydroxyethyl] hexadecanoate were the only compounds detected in all samples from the four provinces. The concentration levels of 2-(((2-ethylhexyl)oxy)carbonyl) benzoic acid, beta-sitosterol, tritetracontane, and ethyl 13-methyltetradecanoate were closely related and expressed a low clustering distance amongst the samples. Variations in soil pH, soil type, and rainfall patterns were detected and differed in the four provinces. The different abiotic stress factors affected the biochemical pathways for the different compounds, with conditions in Gauteng being less favourable for many of the compounds detected. Abiotic stress factors have shown to influence phytochemical biochemical pathways and quantity. <i>Aloe greatheadii</i> plants can be selected based on location seemingly due to the variations that persist in their phytochemical content.</p>","PeriodicalId":8826,"journal":{"name":"Biochemistry Research International","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2022-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8754611/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39939542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
In Vitro Experimental Assessment of Ethanolic Extract of Moringa oleifera Leaves as an α-Amylase and α-Lipase Inhibitor. 辣木叶乙醇提取物α-淀粉酶和α-脂肪酶抑制剂的体外实验研究
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-01 DOI: 10.1155/2022/4613109
Adebanke Ogundipe, Babatunde Adetuyi, Franklyn Iheagwam, Keleko Adefoyeke, Joseph Olugbuyiro, Oluseyi Ogunlana, Olubanke Ogunlana

Methods: Phytochemical screening, antioxidant activity, α-amylase, and α-lipase inhibitory assessment were carried out on Moringa oleifera extract.

Results: The result of the phytochemical screening revealed the presence of total phenolic, flavonoid, tannin, and alkaloid contents of values 0.070 ± 0.005 mg gallic acid equivalent/g, 0.180 ± 0.020 mg rutin equivalent/g, 0.042 ± 0.001 mg tannic equivalent/g, and 12.17 ± 0.001%, respectively, while the total protein analysis was 0.475 ± 0.001 mg bovine serum albumin equivalent/g. Ferric reducing antioxidant power (FRAP) and total antioxidant capacity (TAC) values were 0.534 ± 0.001 mg gallic acid equivalent/g and 0.022 ± 0.00008 mg rutin equivalent/g, respectively. Diphenyl-2-picrylhydrazyl (DPPH), ABTS (2,2'-azino-bis (ethylbenzothiazoline-6-sulfonic acid)), and nitric oxide (NO) assays showed the extract to have a strong free radical scavenging activity. The 50% inhibitory concentration (IC50) values of the lipase and amylase activities of the extract are 1.0877 mg/mL and 0.1802 mg/mL, respectively.

Conclusion: However, α-lipase and α-amylase inhibiting activity of M. oleifera could be related to the phytochemicals in the extract. This research validates the ethnobotanical use of M. oleifera leaves as an effective plant-based therapeutic agent for diabetes and obesity.

方法:对辣木提取物进行植物化学筛选、抗氧化活性、α-淀粉酶和α-脂肪酶抑制活性评价。结果:植物化学筛选结果显示,总酚、类黄酮、单宁和生物碱含量分别为0.070±0.005 mg没食子酸当量/g、0.180±0.020 mg芦丁当量/g、0.042±0.001 mg单宁当量/g和12.17±0.001%,总蛋白含量为0.475±0.001 mg牛血清白蛋白当量/g。铁还原抗氧化能力(FRAP)和总抗氧化能力(TAC)分别为0.534±0.001 mg没食子酸当量/g和0.022±0.00008 mg芦丁当量/g。二苯基-2-吡啶肼(DPPH)、ABTS(2,2′-氮基-双(乙基苯并噻唑-6-磺酸))和一氧化氮(NO)测定表明,该提取物具有较强的自由基清除活性。提取物对脂肪酶和淀粉酶活性的50%抑制浓度(IC50)值分别为1.0877 mg/mL和0.1802 mg/mL。结论:油松提取物对α-脂肪酶和α-淀粉酶的抑制作用可能与油松提取物中的植物化学物质有关。本研究验证了油橄榄叶作为一种有效的植物性治疗糖尿病和肥胖症的民族植物学用途。
{"title":"<i>In Vitro</i> Experimental Assessment of Ethanolic Extract of <i>Moringa oleifera</i> Leaves as an <i>α</i>-Amylase and <i>α</i>-Lipase Inhibitor.","authors":"Adebanke Ogundipe,&nbsp;Babatunde Adetuyi,&nbsp;Franklyn Iheagwam,&nbsp;Keleko Adefoyeke,&nbsp;Joseph Olugbuyiro,&nbsp;Oluseyi Ogunlana,&nbsp;Olubanke Ogunlana","doi":"10.1155/2022/4613109","DOIUrl":"https://doi.org/10.1155/2022/4613109","url":null,"abstract":"<p><strong>Methods: </strong>Phytochemical screening, antioxidant activity, <i>α</i>-amylase, and <i>α</i>-lipase inhibitory assessment were carried out on <i>Moringa oleifera</i> extract.</p><p><strong>Results: </strong>The result of the phytochemical screening revealed the presence of total phenolic, flavonoid, tannin, and alkaloid contents of values 0.070 ± 0.005 mg gallic acid equivalent/g, 0.180 ± 0.020 mg rutin equivalent/g, 0.042 ± 0.001 mg tannic equivalent/g, and 12.17 ± 0.001%, respectively, while the total protein analysis was 0.475 ± 0.001 mg bovine serum albumin equivalent/g. Ferric reducing antioxidant power (FRAP) and total antioxidant capacity (TAC) values were 0.534 ± 0.001 mg gallic acid equivalent/g and 0.022 ± 0.00008 mg rutin equivalent/g, respectively. Diphenyl-2-picrylhydrazyl (DPPH), ABTS (2,2'-azino-bis (ethylbenzothiazoline-6-sulfonic acid)), and nitric oxide (NO) assays showed the extract to have a strong free radical scavenging activity. The 50% inhibitory concentration (IC<sub>50</sub>) values of the lipase and amylase activities of the extract are 1.0877 mg/mL and 0.1802 mg/mL, respectively.</p><p><strong>Conclusion: </strong>However, <i>α</i>-lipase and <i>α</i>-amylase inhibiting activity of <i>M. oleifera</i> could be related to the phytochemicals in the extract. This research validates the ethnobotanical use of <i>M. oleifera</i> leaves as an effective plant-based therapeutic agent for diabetes and obesity.</p>","PeriodicalId":8826,"journal":{"name":"Biochemistry Research International","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815922/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10506897","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Physicochemical Characterization of Dembi Reservoir Water for Suitability of Fish Production, Southwest Ethiopia. 埃塞俄比亚西南部Dembi水库水适合鱼类生产的理化特征
IF 3 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-01 DOI: 10.1155/2022/1343044
Ephrem Chekole, Henok Kassa, Abebe Aschalew, Lalit Ingale

Reservoir water physicochemical characteristics provide important information about water suitability for fish production. Accordingly, the study aimed to characterize the physicochemical characteristics of Dembi reservoir water for sustainable fish production. The study was conducted in Dembi reservoir during the dry season. Water samples were collected in triplicate from selected 10 sampling sites of the reservoir water using manually prepared water sampler made from polyvinyl chloride (PVC) tube. The depth integrated sampling technique was employed to take water samples for all physicochemical characteristics analysis. From the selected 14 physicochemical characteristics, four (temperature, electrical conductivity, pH, and dissolved oxygen) were tested onsite using a multisystem HQ4d electronic meter (probe), whereas the rest 10 water quality characteristics were tested in the laboratory. The result showed that the current average depth of the dam was 5.6 ± 1.61 m. The overall mean values of the water quality characteristics at different sites of the reservoir were as follows: turbidity (26.4 ± 0.44 FTU), total hardness (22.2 ± 0.51 mgL-1), NO3 (5.4 ± 0.48 mgL-1), NO2 (0.3 ± 0.11 mgL-1), NH4 (2.1 ± 0.06 mgL-1), PO4 -3 (1.7 ± 0.27 mgL-1), total alkalinity (52.5 ± 0.91 mgL-1), and BOD5 (2.7 ± 0.24 mgL-1). There was a significant difference (p < 0.05) in all physicochemical characteristics among 10 sampling sites of the reservoir water. The recorded values of all physicochemical characteristics, except NO2, NH4, and PO4 -3, were found within the recommended standard limit for fish production. The change in reservoir water depth and increase in nutrients shows the presence of sediment siltation and nutrient enrichment. Therefore, proper watershed management practices and waste management should be carried out for sustainable water quality maintenance and fish production.

水库水的物理化学特征提供了鱼类生产用水适宜性的重要信息。因此,本研究旨在表征登比水库水的物理化学特征,以促进鱼类的可持续生产。该研究是在旱季期间在Dembi水库进行的。采用人工配制的聚氯乙烯(PVC)管水样器,从水库水的10个采样点采集水样,一式三份。采用深度综合采样技术采集水样,进行各项理化特征分析。从选定的14项理化特性中,4项(温度、电导率、pH值和溶解氧)在现场使用多系统HQ4d电子表(探头)进行测试,其余10项水质特性在实验室进行测试。结果表明,大坝目前的平均深度为5.6±1.61 m。水库不同地点水质特征的总体平均值为:浊度(26.4±0.44 FTU)、总硬度(22.2±0.51 mg -1)、NO3(5.4±0.48 mg -1)、NO2(0.3±0.11 mg -1)、NH4(2.1±0.06 mg -1)、PO4 -3(1.7±0.27 mg -1)、总碱度(52.5±0.91 mg -1)、BOD5(2.7±0.24 mg -1)。水库水10个采样点的理化指标差异均有统计学意义(p < 0.05)。除NO2、NH4和PO4 -3外,所有理化指标均在鱼类生产推荐标准范围内。水库水深的变化和营养物的增加表明存在泥沙淤积和营养物富集。因此,应采取适当的流域管理做法和废物管理,以实现可持续的水质维持和鱼类生产。
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引用次数: 1
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Biochemistry Research International
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