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Irritable bowel syndrome (IBS): could we decide what is behind? 肠易激综合征 (IBS):我们能否确定其背后的原因?
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-03-01 Epub Date: 2024-02-22 DOI: 10.1007/s42977-024-00205-7
György Bárdos

Functional visceral problems are frequently present nowadays in the medical practice probably due to the significant mental and emotional load on people. Although physicians and psychophysiologists are active on the field, still we are far from a complete knowledge, despite the fact that scientists like the Hungarian Professor György Ádám already had initiated a new approach called visceral psychophysiology already a long time ago. In this article, we commemorate Professor Ádám by analyzing one of the most frequent functional disorders, irritable bowel syndrome (IBS), calling psychophysiology for help. First, we try to give a definition, then show the general descriptions and characteristics of IBS. Factors like stress, gender, and gastrointestinal pain are followed by the potential role of the immune system and the neuronal factors as well as the supposed brain mechanisms. We hope that this overview of the IBS-history would show how significant scientists can be decisive in certain fields of the science and practice.

功能性内脏问题如今在医疗实践中经常出现,这可能是由于人们承受着巨大的精神和情绪负担。尽管医生和心理生理学家都活跃在这一领域,但我们的知识还远远不够全面,尽管匈牙利的 György Ádám 教授等科学家在很久以前就已经提出了一种名为内脏心理生理学的新方法。在这篇文章中,我们通过分析最常见的功能性疾病之一--肠易激综合征(IBS),向心理生理学寻求帮助,以此纪念阿达姆教授。首先,我们试图给出一个定义,然后展示肠易激综合征的一般描述和特征。压力、性别和胃肠道疼痛等因素,然后是免疫系统和神经元因素的潜在作用,以及假定的大脑机制。我们希望通过对肠道综合征历史的概述,能够说明重要科学家在某些科学和实践领域的决定性作用。
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引用次数: 0
Is the rubber hand illusion associated with somatic symptom reporting? 橡皮手幻觉与躯体症状报告有关吗?
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-03-01 Epub Date: 2023-07-14 DOI: 10.1007/s42977-023-00171-6
Áron Horváth, Michael Witthöft, Ferenc Köteles

Current approaches to somatic symptom perception conceptualize somatic symptoms partly as somato-visceral or body illusions evoked by an interaction between bottom-up (sensory) and top-down (expectations, attention) processes. Similar processes of multisensory integration are assumed to contribute to the rubber hand illusion (RHI). Findings concerning the strength and direction of associations between these two phenomena, symptom perception and the RHI, are equivocal. Individuals of a non-clinical sample (N = 63; 56% females; Mage = 20.4; SD = 1.6) completed the Patient Health Questionnaire Somatic Symptom Scale (PHQ-15) and participated in an experiment that evoked the RHI. In repeated measures analyses of variance with the PHQ-15 score as covariate, no significant interaction effects between the PHQ-15 score and indicators of the RHI, i.e., proprioceptive drift (F(1,61) < 0.001 p = 0.993, partial η2 < 0.001; BF10 = 0.307), felt body ownership(F(1,59) = 0.043, p = 0.836, partial η2 = 0,001; BF10 = 0.501), and felt body disownership (F(1,59) = 0.148, p = 0.702, partial η2 = 0.002; BF10 = 1.972) were found. Overall, frequentist and Bayesian analysis indicated that the support for a possible association between the PHQ-15 and indicators of the RHI remains inconclusive, i.e., neither the null nor the alternative hypotheses were sufficiently supported. At least in this non-clinical sample, the association between somatic symptom distress and the strength of the RHI appears so weak (perhaps non-existing), that both phenomena (somatic symptom distress and the RHI) appear distinct and largely unrelated.

目前的躯体症状感知方法将躯体症状部分概念化为由自下而上(感觉)和自上而下(期望、注意力)过程相互作用而诱发的躯体-内脏或躯体错觉。橡胶手幻觉(RHI)也是由类似的多感官整合过程造成的。关于症状感知和橡胶手幻觉这两种现象之间关联的强度和方向,研究结果并不一致。非临床样本(N = 63;56% 为女性;Mage = 20.4;SD = 1.6)填写了患者健康问卷躯体症状量表(PHQ-15),并参加了诱发 RHI 的实验。在以 PHQ-15 评分作为协变量的重复测量方差分析中,PHQ-15 评分与 RHI 指标(即本体感觉漂移)之间没有显著的交互效应(F(1))、本体感觉漂移(F(1,61) 2 10 = 0.307)、感觉身体所有权(F(1,59) = 0.043, p = 0.836, partial η2 = 0,001; BF10 = 0.501)和感觉身体不所有权(F(1,59) = 0.148, p = 0.702, partial η2 = 0.002; BF10 = 1.972)之间没有发现明显的交互效应。总体而言,频数分析和贝叶斯分析表明,PHQ-15 和 RHI 指标之间可能存在的关联仍不确定,即零假设和备择假设均未得到充分支持。至少在这个非临床样本中,躯体症状困扰与 RHI 强度之间的关联似乎非常微弱(也许根本不存在),以至于这两种现象(躯体症状困扰和 RHI)看起来截然不同,基本上没有关联。
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引用次数: 0
The interference of negative emotional stimuli on semantic vigilance performance in a dual-task setting. 双重任务环境下负面情绪刺激对语义警觉表现的干扰。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-03-01 Epub Date: 2023-10-01 DOI: 10.1007/s42977-023-00180-5
András N Zsidó, András Matuz, Basler Julia, Gergely Darnai, Árpád Csathó

A large body of previous research has shown that emotional stimuli have an advantage in a wide variety of cognitive processes. This was mainly observed in visual search and working memory tasks. Emotionally charged objects draw and hold attention, are remembered better, and interfere more with the completion of the primary task than neutral ones. Therefore, it seems reasonable to assume that emotional stimuli also greatly affect sustained attention and vigilance decrement. In the present research, we investigated whether emotional stimuli demand more attentional resources than neutral ones in a dual-task paradigm. We adopted the abbreviated semantic discrimination vigilance task and measured participants' (N = 49) performance in a single-task and two dual-task settings. In the dual-task conditions, the visual semantic vigilance paradigm was combined with an auditory word recall task (with neutral or emotional stimuli). We found reduced vigilance and improved word recall performance in the emotional dual-task condition compared to the neutral dual-task and single-task conditions. The reduced performance was apparent throughout the task, while in the neutral conditions, participants' performance first increased and then dropped as time progressed. To conclude, our results indicate that emotional stimuli not only have an advantage in cognitive processing but also demand more attentional resources continuously while it is present compared to neutral stimuli. These results are consistent with the emotionality effect theory and evolutionary accounts of the neural circuits underlying motivated behaviors associated with critical survival needs.

大量先前的研究表明,情绪刺激在各种认知过程中都有优势。这主要在视觉搜索和工作记忆任务中观察到。与中性物体相比,充满感情的物体会吸引和保持注意力,记忆力更好,对完成主要任务的干扰更大。因此,可以合理地假设,情绪刺激也会极大地影响持续注意力和警惕性的下降。在本研究中,我们调查了在双重任务范式中,情绪刺激是否比中性刺激需要更多的注意力资源。我们采用了缩写的语义辨别警戒任务,并测量了参与者的(N = 49)在单个任务和两个双任务设置中的性能。在双重任务条件下,视觉语义警戒范式与听觉单词回忆任务(具有中性或情感刺激)相结合。我们发现,与中性的双任务和单任务条件相比,情绪双任务条件下的警惕性降低,单词回忆表现改善。在整个任务中,表现明显下降,而在中性条件下,随着时间的推移,参与者的表现先是上升,然后下降。总之,我们的研究结果表明,与中性刺激相比,情绪刺激不仅在认知过程中具有优势,而且在存在时需要更多的注意力资源。这些结果与情绪效应理论和与关键生存需求相关的动机行为背后的神经回路的进化描述一致。
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引用次数: 0
Investigating the neurocognitive background of speech perception with a fast multi-feature MMN paradigm. 用快速多特征 MMN 范式研究语音感知的神经认知背景
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-03-01 Epub Date: 2024-05-28 DOI: 10.1007/s42977-024-00219-1
Ferenc Honbolygó, Borbála Zulauf, Maria Ioanna Zavogianni, Valéria Csépe

The speech multi-feature MMN (Mismatch Negativity) offers a means to explore the neurocognitive background of the processing of multiple speech features in a short time, by capturing the time-locked electrophysiological activity of the brain known as event-related brain potentials (ERPs). Originating from Näätänen et al. (Clin Neurophysiol 115:140-144, 2004) pioneering work, this paradigm introduces several infrequent deviant stimuli alongside standard ones, each differing in various speech features. In this study, we aimed to refine the multi-feature MMN paradigm used previously to encompass both segmental and suprasegmental (prosodic) features of speech. In the experiment, a two-syllable long pseudoword was presented as a standard, and the deviant stimuli included alterations in consonants (deviation by place or place and mode of articulation), vowels (deviation by place or mode of articulation), and stress pattern in the first syllable of the pseudoword. Results indicated the emergence of MMN components across all segmental and prosodic contrasts, with the expected fronto-central amplitude distribution. Subsequent analyses revealed subtle differences in MMN responses to the deviants, suggesting varying sensitivity to phonetic contrasts. Furthermore, individual differences in MMN amplitudes were noted, partially attributable to participants' musical and language backgrounds. These findings underscore the utility of the multi-feature MMN paradigm for rapid and efficient investigation of the neurocognitive mechanisms underlying speech processing. Moreover, the paradigm demonstrated the potential to be used in further research to study the speech processing abilities in various populations.

语音多特征 MMN(错配负性)通过捕捉被称为 "事件相关脑电位"(ERPs)的大脑时间锁定电生理活动,为探索短时间内处理多个语音特征的神经认知背景提供了一种方法。该范式源于 Näätänen 等人(Clin Neurophysiol 115:140-144, 2004)的开创性工作,在标准刺激的同时引入了几个不常见的偏差刺激,每个刺激都有不同的语音特征。在本研究中,我们旨在改进之前使用的多特征 MMN 范式,使其同时包含语音的片段和超片段(前语)特征。在实验中,我们将一个双音节长假词作为标准,而偏差刺激包括辅音(发音位置偏差或发音位置和发音方式偏差)、元音(发音位置偏差或发音方式偏差)和假词第一个音节重音模式的改变。结果表明,在所有音段和拟声对比中都出现了 MMN 成分,其振幅呈预期的前中心分布。随后的分析表明,MMN 对偏差的反应存在微妙的差异,这表明对语音对比的敏感性各不相同。此外,MMN振幅也存在个体差异,这部分归因于参与者的音乐和语言背景。这些发现强调了多特征MMN范式在快速有效地研究语音处理的神经认知机制方面的实用性。此外,该范式还展示了在进一步研究不同人群语音处理能力方面的应用潜力。
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引用次数: 0
The moderating effect of resting heart rate variability on the relationship between pain catastrophizing and depressed mood: an empirical study. 静息心率变异性对疼痛灾难和抑郁情绪之间关系的调节作用:一项实证研究。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-03-01 Epub Date: 2023-11-07 DOI: 10.1007/s42977-023-00190-3
Natália Kocsel, Attila Galambos, Júlia Szőke, Gyöngyi Kökönyei

Previous research indicated that pain catastrophizing-a negative emotional and cognitive response toward actual or anticipated pain-could contribute to pain intensity and could be associated with depressive symptoms not just in chronic pain patients but in healthy population as well. Accumulated evidence suggests that resting heart rate variability (HRV) as a putative proxy of emotion regulation could moderate the association of self-reported pain catastrophizing and depressed mood. In the present cross-sectional study, we investigated these associations in a healthy young adult sample controlling for the effect of trait rumination. Seventy-two participants (58 females, mean age = 22.2 ± 1.79 years ranging from 19 to 28 years old) completed the Pain Catastrophizing Scale, the Zung Self-Rating Depression Scale and the Ruminative Response Scale. Resting HRV was measured by time domain metric of HRV, the root mean square of successive differences (RMSSD). The results showed that the relationship between pain catastrophizing and depressive symptoms is significantly moderated by resting HRV (indexed by lnRMSSD). Specifically, in participants with higher resting HRV there was no significant relationship between the two investigated variables, while in participants with relatively low or medium HRV pain catastrophizing and depressed mood showed significant positive association. The relationship remained significant after controlling for sex, age and trait rumination. These results might indicate that measuring pain catastrophizing and depressive symptoms is warranted in non-clinical samples as well and higher resting HRV could have a buffer or protective role against depressive symptoms.

先前的研究表明,疼痛灾难——对实际或预期疼痛的负面情绪和认知反应——可能会导致疼痛强度,不仅在慢性疼痛患者中,而且在健康人群中也可能与抑郁症状有关。累积的证据表明,静息心率变异性(HRV)作为情绪调节的假定指标,可以调节自我报告的疼痛灾难和抑郁情绪的关联。在目前的横断面研究中,我们在一个健康的年轻成年人样本中调查了这些关联,以控制特质沉思的影响。72名参与者(58名女性,平均年龄 = 22.2 ± 1.79岁,19~28岁)完成了疼痛灾难量表、Zung抑郁自评量表和反刍反应量表。静息HRV是通过HRV的时域度量,即连续差异的均方根(RMSSD)来测量的。结果表明,静息HRV(以lnRMSSD为指标)显著调节了疼痛灾难性发作和抑郁症状之间的关系。具体而言,在静息HRV较高的参与者中,两个研究变量之间没有显著关系,而在HRV相对较低或中等的参与者中——疼痛灾难和抑郁情绪表现出显著的正相关。在控制性别、年龄和特质沉思后,这种关系仍然显著。这些结果可能表明,在非临床样本中测量疼痛灾难性和抑郁症状也是有必要的,较高的静息HRV可能对抑郁症状具有缓冲或保护作用。
{"title":"The moderating effect of resting heart rate variability on the relationship between pain catastrophizing and depressed mood: an empirical study.","authors":"Natália Kocsel, Attila Galambos, Júlia Szőke, Gyöngyi Kökönyei","doi":"10.1007/s42977-023-00190-3","DOIUrl":"10.1007/s42977-023-00190-3","url":null,"abstract":"<p><p>Previous research indicated that pain catastrophizing-a negative emotional and cognitive response toward actual or anticipated pain-could contribute to pain intensity and could be associated with depressive symptoms not just in chronic pain patients but in healthy population as well. Accumulated evidence suggests that resting heart rate variability (HRV) as a putative proxy of emotion regulation could moderate the association of self-reported pain catastrophizing and depressed mood. In the present cross-sectional study, we investigated these associations in a healthy young adult sample controlling for the effect of trait rumination. Seventy-two participants (58 females, mean age = 22.2 ± 1.79 years ranging from 19 to 28 years old) completed the Pain Catastrophizing Scale, the Zung Self-Rating Depression Scale and the Ruminative Response Scale. Resting HRV was measured by time domain metric of HRV, the root mean square of successive differences (RMSSD). The results showed that the relationship between pain catastrophizing and depressive symptoms is significantly moderated by resting HRV (indexed by lnRMSSD). Specifically, in participants with higher resting HRV there was no significant relationship between the two investigated variables, while in participants with relatively low or medium HRV pain catastrophizing and depressed mood showed significant positive association. The relationship remained significant after controlling for sex, age and trait rumination. These results might indicate that measuring pain catastrophizing and depressive symptoms is warranted in non-clinical samples as well and higher resting HRV could have a buffer or protective role against depressive symptoms.</p>","PeriodicalId":8853,"journal":{"name":"Biologia futura","volume":" ","pages":"29-39"},"PeriodicalIF":2.1,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71477620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sensory and affective aspects of the perception of respiratory resistance. 呼吸阻力感知的感官和情感方面。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-03-01 Epub Date: 2023-07-23 DOI: 10.1007/s42977-023-00173-4
Orsolya Drozdovszky, Tara Petzke, Ferenc Köteles

Perception of airway resistance has a sensory and an affective aspect, i.e., perceived resistance and unpleasantness, respectively. The current study aimed to shed more light on the relationship of these aspects, as well as their malleability to trait-like aspects of body awareness. In a laboratory study, 71 young participants completed two respiratory resistive load discrimination tasks relying on sensory and affective evaluation, respectively, and filled out questionnaires assessing somatosensory amplification, anxiety sensitivity, somatic symptoms distress, and breath awareness. Frequentist and Bayesian statistical analysis revealed no differences in discrimination accuracy with respect to the sensory and affective aspect of perceived resistance. Psychological traits were not associated with accuracy scores. In conclusion, affective evaluation of respiratory load is as accurate as sensory evaluation. Neither sensory not affective accuracy is influenced by various aspects of body awareness.

对气道阻力的感知包括感官和情感两个方面,即阻力感知和不愉快感知。本研究旨在进一步阐明这两方面的关系,以及它们与身体意识特质方面的可塑性。在一项实验室研究中,71 名年轻参与者分别完成了两项基于感觉和情感评估的呼吸阻力负荷辨别任务,并填写了评估躯体感觉放大、焦虑敏感性、躯体症状困扰和呼吸意识的问卷。频数和贝叶斯统计分析表明,感知阻力的感官和情感方面与辨别准确性没有差异。心理特征与准确性得分无关。总之,对呼吸负荷的情感评估与感官评估一样准确。感觉和情感的准确性都不受身体意识各个方面的影响。
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引用次数: 0
Structural neural correlates of mental fatigue and reward-induced improvement in performance. 精神疲劳和奖励诱导的表现改善的结构神经相关性。
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-03-01 Epub Date: 2023-10-27 DOI: 10.1007/s42977-023-00187-y
András Matuz, Gergely Darnai, András N Zsidó, József Janszky, Árpád Csathó

Neuroimaging studies investigating the association between mental fatigue (henceforth fatigue) and brain physiology have identified many brain regions that may underly the cognitive changes induced by fatigue. These studies focused on the functional changes and functional connectivity of the brain relating to fatigue. The structural correlates of fatigue, however, have received little attention. To fill this gap, this study explored the associations of fatigue with cortical thickness of frontal and parietal regions. In addition, we aimed to explore the associations between reward-induced improvement in performance and neuroanatomical markers in fatigued individuals. Thirty-nine healthy volunteers performed the psychomotor vigilance task for 15 min (i.e., 3 time-on-task blocks of 5 min) out of scanner; followed by an additional rewarded block of the task lasting 5 min. Baseline high-resolution T1-weigthed MR images were obtained. Reaction time increased with time-on-task but got faster again in the rewarded block. Participants' subjective fatigue increased during task performance. In addition, we found that higher increase in subjective mental fatigue was associated with the cortical thickness of the following areas: bilateral precuneus, right precentral gyrus; right pars triangularis and left superior frontal gyrus. Our results suggest that individual differences in subjective mental fatigue may be explained by differences in the degree of cortical thickness of areas that are associated with motor processes, executive functions, intrinsic alertness and are parts of the default mode network.

研究精神疲劳(以下简称疲劳)与大脑生理学之间关系的神经影像学研究已经确定了许多大脑区域,这些区域可能是疲劳引起的认知变化的基础。这些研究的重点是与疲劳有关的大脑功能变化和功能连接。然而,疲劳的结构相关性却很少受到关注。为了填补这一空白,本研究探讨了疲劳与额叶和顶叶皮层厚度的关系。此外,我们旨在探索奖励诱导的疲劳个体表现改善与神经解剖学标志物之间的关系。39名健康志愿者在扫描仪外进行了15分钟的心理运动警戒任务(即在5分钟的任务块上进行3次);接着是持续5分钟的任务的额外奖励块。获得基线高分辨率T1加权MR图像。反应时间随着任务时间的推移而增加,但在奖励区块中再次加快。参与者的主观疲劳在任务执行过程中增加。此外,我们发现主观精神疲劳的增加与以下区域的皮层厚度有关:双侧楔前叶、右侧中央前回;右三角部和左额上回。我们的研究结果表明,主观精神疲劳的个体差异可以通过与运动过程、执行功能、内在警觉性相关的区域的皮层厚度程度的差异来解释,这些区域是默认模式网络的一部分。
{"title":"Structural neural correlates of mental fatigue and reward-induced improvement in performance.","authors":"András Matuz, Gergely Darnai, András N Zsidó, József Janszky, Árpád Csathó","doi":"10.1007/s42977-023-00187-y","DOIUrl":"10.1007/s42977-023-00187-y","url":null,"abstract":"<p><p>Neuroimaging studies investigating the association between mental fatigue (henceforth fatigue) and brain physiology have identified many brain regions that may underly the cognitive changes induced by fatigue. These studies focused on the functional changes and functional connectivity of the brain relating to fatigue. The structural correlates of fatigue, however, have received little attention. To fill this gap, this study explored the associations of fatigue with cortical thickness of frontal and parietal regions. In addition, we aimed to explore the associations between reward-induced improvement in performance and neuroanatomical markers in fatigued individuals. Thirty-nine healthy volunteers performed the psychomotor vigilance task for 15 min (i.e., 3 time-on-task blocks of 5 min) out of scanner; followed by an additional rewarded block of the task lasting 5 min. Baseline high-resolution T1-weigthed MR images were obtained. Reaction time increased with time-on-task but got faster again in the rewarded block. Participants' subjective fatigue increased during task performance. In addition, we found that higher increase in subjective mental fatigue was associated with the cortical thickness of the following areas: bilateral precuneus, right precentral gyrus; right pars triangularis and left superior frontal gyrus. Our results suggest that individual differences in subjective mental fatigue may be explained by differences in the degree of cortical thickness of areas that are associated with motor processes, executive functions, intrinsic alertness and are parts of the default mode network.</p>","PeriodicalId":8853,"journal":{"name":"Biologia futura","volume":" ","pages":"93-104"},"PeriodicalIF":2.1,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54227464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep learning in terrestrial conservation biology. 陆地保护生物学中的深度学习。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2023-12-01 Epub Date: 2024-01-16 DOI: 10.1007/s42977-023-00200-4
Zoltán Barta

Biodiversity is being lost at an unprecedented rate on Earth. As a first step to more effectively combat this process we need efficient methods to monitor biodiversity changes. Recent technological advance can provide powerful tools (e.g. camera traps, digital acoustic recorders, satellite imagery, social media records) that can speed up the collection of biological data. Nevertheless, the processing steps of the raw data served by these tools are still painstakingly slow. A new computer technology, deep learning based artificial intelligence, might, however, help. In this short and subjective review I oversee recent technological advances used in conservation biology, highlight problems of processing their data, shortly describe deep learning technology and show case studies of its use in conservation biology. Some of the limitations of the technology are also highlighted.

地球上的生物多样性正在以前所未有的速度丧失。作为更有效地应对这一进程的第一步,我们需要高效的方法来监测生物多样性的变化。最近的技术进步提供了强大的工具(如相机陷阱、数字声音记录器、卫星图像、社交媒体记录),可以加快生物数据的收集。然而,这些工具提供的原始数据的处理步骤仍然非常缓慢。不过,一种新的计算机技术,即基于深度学习的人工智能,可能会有所帮助。在这篇简短而主观的综述中,我将概述最近用于保护生物学的技术进步,强调处理其数据的问题,简要介绍深度学习技术,并展示其在保护生物学中的应用案例研究。此外,还强调了该技术的一些局限性。
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引用次数: 0
Physicochemical and sequence determinants of antiviral peptides. 抗病毒肽的物理化学和序列决定因素。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-10-27 DOI: 10.1007/s42977-023-00188-x
Abhigyan Nath

Antiviral peptides (AVPs) open new possibilities as an effective antiviral therapeutic in the current scenario of evolving drug-resistant viruses. Knowledge about the sequence and structure activity relationship in AVPs is still largely unknown. AVPs and antimicrobial peptides (AMPs) share several common features but as they target different life forms (living organisms and viruses), exploring the differential sequence features may facilitate in designing specific AVPs. The current work developed accurate prediction models for discriminating (a) AVPs from AMPs, (b) Coronaviridae AVPs from other virus family specific AVPs and (c) highly active AVPs (HAA) from lowly active AVPs (LAA). Further explainable machine learning methods (using model agnostic global interpretable methods) are utilized for exploring and interpreting the physicochemical spaces of AVPs, Coronaviridae AVPs and highly active AVPs. To further understand the association of physicochemical space distribution with pIC50 values, regression models were developed and analyzed using accumulated local effects and interaction strength analysis. An independent sample t-test is used to filter out the significant compositional differences between the smaller length HAA and longer length HAA groups. AVPs prefer lower charge/length ratio and basic residues in comparison with AMPs. Coronaviridae family-specific AVPs have lower propensities for basic amino acids, charge and preference for aspartic acid. Further there is prevalence for basic residues in lowly active AVPs as compared to highly active AVPs. Sequence order effects captured in terms of average amino acid pair distances proved to be more constructive in deciphering the sequences of AVPs.

抗病毒肽(AVPs)作为一种有效的抗病毒治疗方法,在当前耐药病毒不断发展的情况下开辟了新的可能性。关于AVP的序列和结构-活性关系的知识在很大程度上仍然未知。AVP和抗菌肽(AMP)有几个共同的特征,但由于它们针对不同的生命形式(活生物体和病毒),探索差异序列特征可能有助于设计特定的AVP。目前的工作开发了准确的预测模型,用于区分(a)AVP和AMP,(b)冠状病毒科AVP和其他病毒家族特异性AVP,以及(c)高活性AVP(HAA)和低活性AVP。进一步的可解释机器学习方法(使用模型不可知的全局可解释方法)被用于探索和解释AVP、冠状病毒科AVP和高活性AVP的物理化学空间。为了进一步了解物理化学空间分布与pIC50值的关联,使用累积局部效应和相互作用强度分析来开发和分析回归模型。使用独立样本t检验来过滤较小长度HAA和较长长度HAA组之间的显著成分差异。与AMP相比,AVP更喜欢较低的电荷/长度比和碱性残基。冠状病毒家族特异性AVP对碱性氨基酸、电荷和天冬氨酸的偏好性较低。此外,与高活性AVP相比,低活性AVP中存在碱性残基的普遍性。根据平均氨基酸对距离捕获的序列顺序效应被证明在破译AVP序列方面更具建设性。
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引用次数: 0
Changes of the composition of the Noctuoidea fauna along a geographical gradient in the northeastern part of the Carpathian Lowland. 喀尔巴阡山脉低地东北部夜蛾科动物群组成沿地理梯度的变化。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2023-12-01 Epub Date: 2024-02-28 DOI: 10.1007/s42977-024-00210-w
Szabolcs Szanyi, Kálmán Szanyi, Antal Nagy

The northeastern part of the Carpathian Lowland is one of the most species-rich parts of the region, despite the long-term and sometimes extreme changes in land use. The fragmented remains of formerly contiguous forests maintain a significant part of the wildlife living in different oak, mixed oak, and gallery forest, and even faunas of connected grassland habitats. To reveal how the parallel Carpathian and Pannonian effects form the local insect fauna, the Noctuoidea assemblages of eight forest patches were assessed and compared, based on the distribution data of 479 species. Three types of assemblages were designated, with similar diversity but different compositions. The most unique and valuable ones can be found in the colline area of Transcarpathia, where the high habitat diversity supported by the topography promotes the coexistence of the species of humid forest fauna and many steppic and southern elements. The protection and planned management of these remained forest patches and their network in international cooperation can maintain a significant part of the fauna of the affected regions.

喀尔巴阡山脉低地的东北部是该地区物种最丰富的地区之一,尽管土地利用发生了长期、有时甚至是极端的变化。昔日连片森林的破碎遗迹保留了生活在不同橡树林、橡树混交林和长廊林中的大部分野生动物,甚至是相连草原栖息地的动物群落。为了揭示喀尔巴阡山脉和潘诺尼亚山脉的平行影响是如何形成当地昆虫动物群的,我们根据 479 个物种的分布数据,对八个森林斑块的夜蛾类群落进行了评估和比较。结果发现有三种类型的集合体,它们具有相似的多样性,但组成却各不相同。外喀尔巴阡丘陵地带是最独特和最有价值的地区,那里的地形支持了高度的栖息地多样性,促进了湿润森林动物区系物种与许多草原和南方元素的共存。通过国际合作保护和有计划地管理这些残存的森林斑块及其网络,可以维持受影响地区的大部分动物群落。
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引用次数: 0
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