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Exploring the potential of plant astrobiology: adapting flora for extra-terrestrial habitats: a review. 探索植物天体生物学的潜力:使植物适应地外生境:综述。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-20 DOI: 10.1007/s42977-024-00245-z
Muhammad Waqas Mazhar, Muhammad Ishtiaq, Mehwish Maqbool, Eman A Mahmoud, Fahed A Almana, Hosam O Elansary

In recent years, the realm of astrobiology has expanded beyond the search for microbial life to encompass the intriguing possibility of plant life beyond our planet. Plant astrobiology delves into the adaptations and mechanisms that might allow Earth's flora to flourish in the harsh conditions of outer space and other celestial bodies. This review aims to shed light on the captivating field of plant astrobiology, its implications, and the challenges and opportunities it presents. Plant astrobiology marries the disciplines of botany and astrobiology, challenging us to envision the growth of plants beyond Earth's atmosphere. Researchers in this field are not only exploring the potential for plant life on other planets and moons but also investigating how plants could be harnessed to sustain life during extended space missions. The review discusses how plants could adapt to environments characterized by low gravity, high radiation, extreme temperature fluctuations, and different atmospheric compositions. It highlights the physiological changes necessary for plants to survive and reproduce in these conditions. A pivotal concept is the integration of plants into closed-loop life support systems, where plants would play a crucial role in recycling waste products, generating oxygen, and producing food. The review delves into ongoing research involving genetic modifications and synthetic biology techniques to enhance plants' resilience in space environments. It addresses ethical considerations associated with altering organisms for off-planet habitation. Additionally, the review contemplates the psychological and emotional benefits of having greenery in enclosed, isolated space habitats. The review concludes that by employing advanced research methodologies, the field of plant astrobiology can greatly enhance the viability and sustainability of future space missions, highlighting the essential role of plants in sustaining long-term human presence beyond Earth.

近年来,天体生物学的领域已经从寻找微生物生命扩展到我们星球以外的植物生命这一令人好奇的可能性。植物天体生物学深入研究了地球植物群在外太空和其他天体的恶劣条件下繁衍生息的适应性和机制。本综述旨在揭示植物天体生物学这一令人着迷的领域、其影响以及它所带来的挑战和机遇。植物天体生物学将植物学和天体生物学结合起来,挑战我们对地球大气层以外植物生长的设想。这一领域的研究人员不仅在探索其他行星和卫星上植物生命的潜力,而且还在研究如何利用植物在长期太空任务中维持生命。综述讨论了植物如何适应低重力、高辐射、极端温度波动和不同大气成分的环境。它强调了植物在这些条件下生存和繁殖所需的生理变化。一个关键的概念是将植物纳入闭环生命支持系统,在该系统中,植物将在回收废品、产生氧气和生产食物方面发挥关键作用。这篇综述深入探讨了正在进行的研究,其中涉及基因改造和合成生物学技术,以增强植物在太空环境中的适应能力。综述探讨了与改变生物以适应外星球居住环境相关的伦理问题。此外,综述还探讨了在封闭、孤立的太空栖息地种植绿色植物在心理和情感方面的益处。综述的结论是,通过采用先进的研究方法,植物天体生物学领域可以大大提高未来太空任务的可行性和可持续性,突出植物在维持人类在地球以外长期存在方面的重要作用。
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引用次数: 0
Enhancment of zebrafish (Danio rerio) immune and antioxidant systems using medicinal plant extracts encapsulated in alginate-chitosan nanocapsules with slow sustained release. 使用包裹在海藻酸盐-壳聚糖纳米胶囊中的药用植物提取物缓慢持续释放,增强斑马鱼(Danio rerio)的免疫和抗氧化系统。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-15 DOI: 10.1007/s42977-024-00244-0
Abdolmajid Valipour, Behrooz Heidari, Hadi Esmaeili Gouvarchin Ghaleh, Maryam Ghorbani, Alireza Shahriari, Maryam Iman, Ebrahim Salimi-Sabour

This study aimed to screen 10 medicinal plant extracts on zebrafish (Danio rerio), evaluating their impact on the complement system, immunoglobulin M (IgM) levels, lysozyme, and peroxidase activity, while also enhancing their efficacy through the gradual release using alginate-chitosan nanocapsules. The prepared methanolic extracts were combined with fish feed. The fish were divided into 12 groups, including 10 treatment groups, a positive and a negative control group. Results showed varying impacts of the extracts on the immune and antioxidant systems, with Cinnamon (Cinnamon cassia) and Hypericum (Hypericum perforatum) extracts demonstrating the most significant effects. Subsequently, Cinnamon and Hypericum extract were encapsulated in alginate-chitosan nanocapsules to assess their impact on zebrafish immune parameters, separately and synergistically. Gradual release of the extracts from the nanocapsules was observed, with slower release at pH 2 compared to pH 7. Overall, Cinnamon and Hypericum extracts exhibited substantial immune system enhancement, and their encapsulation in nanocapsules improved their effects on zebrafish immune parameters. These findings suggest using these encapsulated extracts to enhance immune responses in aquatic organisms.

本研究旨在筛选斑马鱼(Danio rerio)身上的 10 种药用植物提取物,评估它们对补体系统、免疫球蛋白 M(IgM)水平、溶菌酶和过氧化物酶活性的影响,同时通过使用海藻酸-壳聚糖纳米胶囊的渐进释放提高其药效。制备的甲醇提取物与鱼饲料混合。将鱼分成 12 组,包括 10 个处理组、一个阳性对照组和一个阴性对照组。结果显示,提取物对免疫和抗氧化系统的影响各不相同,其中肉桂和金丝桃提取物的影响最为显著。随后,将肉桂和金丝桃提取物封装在藻酸盐-壳聚糖纳米胶囊中,以评估它们分别和协同对斑马鱼免疫参数的影响。观察到提取物从纳米胶囊中逐渐释放出来,在 pH 值为 2 时释放速度比 pH 值为 7 时慢。总体而言,肉桂和金丝桃提取物表现出显著的免疫系统增强作用,将它们封装在纳米胶囊中可改善它们对斑马鱼免疫参数的影响。这些发现建议使用这些封装提取物来增强水生生物的免疫反应。
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引用次数: 0
Characterisation of the complete chloroplast genome of Solanum tuberosum cv. White Lady 茄科植物 "白娘子 "完整叶绿体基因组的特征描述
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-09 DOI: 10.1007/s42977-024-00240-4
Krisztián Frank, Erzsébet Nagy, János Taller, István Wolf, Zsolt Polgár

Potato (Solanum tuberosum) is considered worldwide as one of the most important non-cereal food crops. As a result of its adaptability and worldwide production area, potato displays a vast phenotypical variability as well as genomic diversity. Chloroplast genomes have long been a core issue in plant molecular evolution and phylogenetic studies, and have an important role in revealing photosynthetic mechanisms, metabolic regulations and the adaptive evolution of plants. We sequenced the complete chloroplast genome of the Hungarian cultivar White Lady, which is 155 549 base pairs (bp) in length and is characterised by the typical quadripartite structure composed of a large- and small single-copy region (85 991 bp and 18 374 bp, respectively) interspersed by two identical inverted repeats (25 592 bp). The genome consists of 127 genes of which 82 are protein-coding, eight are ribosomal RNAs and 37 are transfer RNAs. The overall gene content and distribution of the genes on the White Lady chloroplast was the same as found in other potato chloroplasts. The alignment of S. tuberosum chloroplast genome sequences resulted in a highly resolved tree, with 10 out of the 13 nodes recovered having bootstrap values over 90%. By comparing the White Lady chloroplast genome with available S. tuberosum sequences we found that gene content and synteny are highly conserved. The new chloroplast sequence can support further studies of genetic diversity, resource conservation, evolution and applied agricultural research. The new sequence can support further potato genetic diversity and evolutionary studies, resource conservation, and also applied agricultural research.

马铃薯(Solanum tuberosum)在全世界被视为最重要的非谷类粮食作物之一。由于马铃薯的适应性强且产地遍布全球,因此其表型变异性和基因组多样性都非常大。长期以来,叶绿体基因组一直是植物分子进化和系统发育研究的核心问题,在揭示植物的光合机制、代谢调控和适应性进化方面发挥着重要作用。我们测序了匈牙利栽培品种 "白夫人"(White Lady)的完整叶绿体基因组,该基因组全长 155 549 碱基对(bp),具有典型的四方结构,由一大一小两个单拷贝区(分别为 85 991 bp 和 18 374 bp)和两个相同的倒置重复区(25 592 bp)穿插组成。基因组由 127 个基因组成,其中 82 个是编码蛋白质的基因,8 个是核糖体 RNA,37 个是转移 RNA。白小姐叶绿体上基因的总体含量和分布与其他马铃薯叶绿体相同。S. tuberosum叶绿体基因组序列的比对结果是一棵高度解析的树,13个节点中有10个节点的引导值超过90%。通过比较 "白衣天使 "叶绿体基因组与现有的 S. tuberosum 序列,我们发现基因内容和同源关系高度保守。新的叶绿体序列有助于进一步研究遗传多样性、资源保护、进化和农业应用研究。新序列可进一步支持马铃薯遗传多样性和进化研究、资源保护以及农业应用研究。
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引用次数: 0
Investigation of effect peripheral kisspeptin treatment on hypothalamo-pituitary-gonadal axis and hypothalamo-pituitary-adrenal axis in male rats. 研究外周kisspeptin处理对雄性大鼠下丘脑-垂体-性腺轴和下丘脑-垂体-肾上腺轴的影响
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-09 DOI: 10.1007/s42977-024-00241-3
Zafer Sahin, Osman Aktas, Omer Faruk Kalkan, Gokhan Cuce, Ahmet Alver, Elif Sahin, Seniz Erdem, Neslihan Saglam, Zulfikare Isik Solak Gormus, Selim Kutlu

Kisspeptin is an endogenous peptide hormone that is the most potent stimulator of the hypothalamo-pituitary-gonadal (HPG) axis. The HPG axis can be suppressed by the activation of the hypothalamo-pituitary-adrenal (HPA) axis. The physiological role of kisspeptin in the interaction of the HPG axis and the HPA axis is not fully understood yet. The purpose of the current study was to investigate the possible effects of peripheral injection (intraperitoneally) of kisspeptin on HPG axis and HPA axis activity as well. Adult male Wistar rats were randomly divided into seven groups as sham (control), kisspeptin (10 nmol), p234 (10 nmol), kisspeptin + p234, kisspeptin + antalarmin (10 mg/kg), kisspeptin + astressin2b (100 μg/kg), and kisspeptin + atosiban (0.250 mg/kg) (n = 10 each group). At the end of the experiment, the hypothalamus, pituitary gland, and serum samples of the rats were collected. Serum follicle-stimulating hormone and luteinizing hormone levels of the kisspeptin, kisspeptin + antalarmin and kisspeptin + astressin2b groups were significantly higher than the control group. Serum testosterone levels were significantly higher in the kisspeptin, kisspeptin + antalarmin, kisspeptin + astressin2b, and kisspeptin + atosiban groups that compared to the control group. There was no a significant difference in corticotropic releasing hormone immunoreactivity in the paraventricular nucleus of the hypothalamus, serum adrenocorticotropic hormone and corticosterone concentrations among all groups. Moreover, no significant difference was found in the concentration of pituitary oxytocin. Our results suggest that peripheral kisspeptin injection induces an activation in the HPG axis, but not in the HPA axis in male rats.

基斯肽是一种内源性肽类激素,是下丘脑-垂体-性腺轴(HPG)最有效的刺激物。下丘脑-垂体-肾上腺(HPA)轴的激活可抑制 HPG 轴。目前还不完全清楚Kisspeptin在HPG轴和HPA轴相互作用中的生理作用。本研究旨在探讨外周注射(腹腔注射)吻肽对 HPG 轴和 HPA 轴活动的可能影响。将成年雄性Wistar大鼠随机分为假(对照组)、kisspeptin(10 nmol)、p234(10 nmol)、kisspeptin + p234、kisspeptin + antalarmin(10 mg/kg)、kisspeptin + astressin2b(100 μg/kg)和kisspeptin + atosiban(0.250 mg/kg)七组(每组n = 10)。实验结束后,收集大鼠的下丘脑、垂体和血清样本。吻肽、吻肽+安他敏和吻肽+Astressin2b组的血清促卵泡激素和促黄体生成素水平显著高于对照组。与对照组相比,kisspeptin 组、kisspeptin + antalmin 组、kisspeptin + astressin2b 组和 kisspeptin + atosiban 组的血清睾酮水平明显更高。各组下丘脑室旁核的促肾上腺皮质激素释放激素免疫活性、血清促肾上腺皮质激素和皮质酮浓度均无明显差异。此外,垂体催产素的浓度没有明显差异。我们的研究结果表明,注射外周吻肽能诱导雄性大鼠的 HPG 轴活化,但不能诱导 HPA 轴活化。
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引用次数: 0
Microbiological aspects of sewage odor problems in the urban environment - a review 城市环境中污水臭味问题的微生物学方面--综述
IF 2.1 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-09 DOI: 10.1007/s42977-024-00242-2
Tamás Felföldi

Growing human population and increasing urbanization call for the need for proper wastewater treatment to reduce environmental pollution and reduce the excess use of natural resources. During the collection of municipal wastewater, the rapid aerobic respiration often causes oxygen depletion and anaerobic conditions in the sewer system resulting in the production of malodorous compounds. The odor problems may lead to public complaints, or in the case of the sewage workers the released volatile compounds even cause serious health hazards. Therefore, microbes have a dual contribution in the urban water cycle, since they have a decisive role in wastewater treatment and the removal of pollutants, but they can also cause problems in the artificial environment. In this review, I would like to summarize the processes underlying the generation of the bad smell associated with sewage and wastewater or with the collection and treatment infrastructure, tracking the way from the households to the plants, including the discussion of processes and possible mitigation related to the released hydrogen sulfide, volatile organics and other compounds.

人口的不断增长和城市化进程的不断加快要求对废水进行适当处理,以减少环境污染和自然资源的过度使用。在收集城市污水的过程中,快速的有氧呼吸往往会造成下水道系统的氧气耗尽和厌氧条件,从而产生恶臭化合物。臭味问题可能导致公众投诉,对于污水处理工人来说,释放的挥发性化合物甚至会严重危害健康。因此,微生物在城市水循环中具有双重贡献,因为它们在废水处理和去除污染物方面起着决定性作用,但也会在人工环境中造成问题。在这篇综述中,我想总结一下与污水和废水或与收集和处理基础设施有关的恶臭产生的基本过程,从家庭到工厂,包括讨论与释放的硫化氢、挥发性有机物和其他化合物有关的过程和可能的缓解措施。
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引用次数: 0
Drug-degrading bacteria isolated from the effluent water of a sewage plant. 从污水处理厂废水中分离出的降解药物细菌。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-07-26 DOI: 10.1007/s42977-024-00236-0
T Mireisz, F B Horváth, N T Kashaija, R Farkas, I Boldizsár, E Tóth

Endocrine disruptors are potential environmental contaminants that can cause toxicity in aquatic ecosystems, so the Water Framework Directive has established limits for these compounds. During our research, 41 bacterial strains were isolated and identified from sewage effluent and tested for their degradation capacities for bisphenol A, 17β-estradiol, and nonylphenol. All the isolated bacteria belonged to the Gammaproteobacteria class of Pseudomonadota phylum (members of Citrobacter, Enterobacter, Escherichia, Klebsiella, Kluyvera, Leclercia, Raoultella, Shigella. Acinetobacter, Aeromonas, and Pseudomonas genera). During the experiments, only strains HF17, HF18 (Pseudomonas aeruginosa), and HF31 (Citrobacter freundii) were unable to grow on these compounds, all other bacterial strains could grow in the presence of the investigated endocrine disruptors. Based on the genomic analysis of the type strains, a set of genes involving aromatic compound degradation was detected, among the peripheral metabolic pathways, the quinate and benzoate degradation pathways proved to be widespread, among the central aromatic intermediates metabolism, the catechol branch of the beta-ketoadipate pathway was the most dominant. Pseudomonas fulva HF16 strain could utilize the investigated endocrine disruptors: bisphenol A by 34%, 17β-estradiol by 52%, and nonylphenol by 54%.

内分泌干扰物是潜在的环境污染物,可对水生生态系统造成毒性,因此《水框架指令》对这些化合物规定了限制。在研究过程中,我们从污水中分离并鉴定了 41 株细菌,并测试了它们对双酚 A、17β-雌二醇和壬基酚的降解能力。所有分离出的细菌都属于假单胞菌门中的伽马蛋白菌(Citrobacter、Enterobacter、Escherichia、Klebsiella、Kluyvera、Leclercia、Raoultella、Shigella.在实验过程中,仅有 117 株菌株被检出。)在实验过程中,只有 HF17、HF18(铜绿假单胞菌)和 HF31(自由柠檬酸杆菌)菌株无法在这些化合物上生长,所有其他细菌菌株都能在所研究的内分泌干扰物存在的情况下生长。根据对类型菌株的基因组分析,发现了一组涉及芳香化合物降解的基因,在外围代谢途径中,奎宁酸盐和苯甲酸盐降解途径被证明是广泛存在的,在芳香中间产物的中心代谢途径中,β-酮基二酸酯途径的儿茶酚分支是最主要的。富勒瓦假单胞菌 HF16 菌株可利用所研究的内分泌干扰物:双酚 A 的利用率为 34%,17β-雌二醇的利用率为 52%,壬基酚的利用率为 54%。
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引用次数: 0
Taxonomic diversity and environmental tolerance of cultivable extremophilic bacteria from a high-altitude meltwater pond on Ojos del Salado (Chile). 来自 Ojos del Salado(智利)高海拔融水池塘的可培养嗜极细菌的分类多样性和环境耐受性。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-07-11 DOI: 10.1007/s42977-024-00229-z
Viktória Faragó, Melinda Megyes, Balázs Nagy, Andrea K Borsodi

Earth harbors unique environments where only microorganisms adapted to extreme conditions, known as extremophiles, can survive. This study focused on a high-altitude meltwater pond, located in the Puna de Atacama, Dry Andes. The extremophilic bacteria of this habitat must adapt to a range of extremities, including cold and dry climate, high UV radiation, high daily temperature fluctuations, low-nutrient availability, and negative water balance. This study aimed to explore the taxonomic diversity of cultivable extremophilic bacteria from sediment samples of a desiccated, high-altitude, meltwater pond using media with different organic matter contents and different incubation temperatures. Based on the 16S rRNA gene sequence analysis, the isolates were identified as members of the phyla Actinobacteria, Proteobacteria, and Firmicutes. The most abundant genera were Arthrobacter and Pseudoarthrobacter. The isolates had oligocarbophilic and psychrotrophic properties, suggesting that they have adapted to the extreme environmental parameters of their natural habitats. The results indicate a positive correlation between nutrient concentration and temperature tolerance.

地球蕴藏着独特的环境,只有适应极端条件的微生物(即嗜极端生物)才能在这种环境中生存。这项研究的重点是位于干安第斯山脉普纳德阿塔卡马的一个高海拔融水池塘。该栖息地的嗜极细菌必须适应一系列极端条件,包括寒冷干燥的气候、高紫外线辐射、高日温波动、低营养供应和负水平衡。本研究旨在利用不同有机物含量和不同培养温度的培养基,探索干燥的高海拔融水池塘沉积物样本中可培养的嗜极细菌的分类多样性。根据 16S rRNA 基因序列分析,分离物被鉴定为放线菌门、变形菌门和固醇菌门的成员。最多的菌属是节杆菌属和假节杆菌属。这些分离菌具有寡嗜碳和精神营养特性,表明它们已经适应了其自然栖息地的极端环境参数。结果表明,营养浓度与耐温性之间存在正相关。
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引用次数: 0
The impact of stagnation on the microbial quality of constructed water systems after COVID-19 shutdowns. COVID-19 停机后停滞对建造水系统微生物质量的影响。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-07-24 DOI: 10.1007/s42977-024-00231-5
Anett Lippai, Csaba Ágoston, Lilla Szunyogh

In response to COVID-19 pandemic, governments all over the world limited the movement of people and mandated temporary closure of different institutions. While, these measures helped to reduce the spread of COVID-19, stagnant water can cause water quality deterioration. Stagnation is considered in context with the proliferation of pathogenic and facultatively pathogenic bacteria which pose potential health risks to humans. The objective of this study was to document the hygienic microbiological status of different water systems after the first shutdowns (between 18th March 2020 and 18th May 2020) in Hungary in comparison with a reference period (between 3rd January 2020 to 17th March). During the reference period drinking waters were compliant > 95% of total samples to the parametric values. After the short period shutdowns, the ratio of tnon-compliant drinking water samples was 6.6%: mainly Pseudomonas aeruginosa (7%) and coliform bacteria (5%) resulted poor water quality. The microscopic analysis of drinking waters showed that after low water demand the values of non-compliant samples also increased due to the proliferation of Amoebozoa and other Protozoa species. The compliant pool waters' ratio was also high in the reference period (97-99%), while after the shutdowns more samples were positive in both pool operation type (fill-and-drain pools and pools with recirculation) due to the proliferation of P. aeruginosa (14%) and micrococci (12%). Legionella non-compliant samples in hot tap water did not show significant difference during both studied periods (15%) although after stagnation the Legionella CFU (colony forming unit) values of the samples increased markedly.

为应对 COVID-19 大流行,世界各国政府限制人员流动,并规定暂时关闭不同机构。虽然这些措施有助于减少 COVID-19 的传播,但积水会导致水质恶化。积水会导致致病菌和兼性致病菌大量繁殖,对人类健康造成潜在威胁。本研究的目的是记录匈牙利不同供水系统在首次停水(2020 年 3 月 18 日至 2020 年 5 月 18 日)后的微生物卫生状况,并与参照期(2020 年 1 月 3 日至 3 月 17 日)进行比较。在参考期间,饮用水中 95% 以上的样本都符合参数值。短期停水后,不符合标准的饮用水样本比例为 6.6%:主要是铜绿假单胞菌(7%)和大肠菌群(5%)导致水质不佳。饮用水的显微分析表明,在低需水量后,由于阿米巴原虫和其他原生动物的大量繁殖,不达标水样的数值也有所增加。在参照期,符合标准的池水比例也很高(97%-99%),而在停水后,由于铜绿假单胞菌(14%)和微球菌(12%)的大量繁殖,两种池水运行类型(填排水池和再循环池)中都有更多的样本呈阳性。热自来水中不符合要求的退伍军人病菌样本在两个研究期间没有明显差异(15%),但在停滞后,样本中的退伍军人病菌 CFU(菌落形成单位)值明显增加。
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引用次数: 0
Bacterial community composition of Hungarian salt-affected soils under different land uses. 不同土地利用条件下匈牙利受盐影响土壤的细菌群落组成。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-07-19 DOI: 10.1007/s42977-024-00235-1
Ravi Kumar Gangwar, András Táncsics, Marianna Makádi, Milán Farkas, Mátyás Cserháti, Erika Michéli, Márta Fuchs, Tamás Szegi

Salinization and sodification are serious and worldwide growing threats to healthy soil functions. Although plants developed a plethora of traits to cope with high salinity, soil bacteria are also essential players of the adaptation process. However, there is still lack of knowledge on how other biotic and abiotic factors, such as land use or different soil properties, affect the bacterial community structure of these soils. Therefore, besides soil chemical and physical investigations, bacterial communities of differently managed salt-affected soils were analysed through 16S rRNA gene Illumina amplicon sequencing and compared. Results have shown that land use and soil texture were the main drivers in shaping the bacterial community structure of the Hungarian salt-affected soils. It was observed that at undisturbed pasture and meadow sites, soil texture and the ratio of vegetation cover were the determinative factors shaping the bacterial community structures, mainly at the level of phylum Acidobacteriota. Sandy soil texture promoted the high abundance of members of the class Blastocatellia, while at the slightly disturbed meadow soil showing high clay content was dominated by members of the class Acidobacteriia. The OTUs belonging to the class Ktedonobacteria, which were reported mostly in geothermal sediments, reached a relatively high abundance in the meadow soil.

盐碱化和钠化是对健康土壤功能的严重威胁,而且在全球范围内日益严重。虽然植物发展出了大量性状来应对高盐度,但土壤细菌也是适应过程中的重要角色。然而,人们对其他生物和非生物因素(如土地利用或不同的土壤特性)如何影响这些土壤的细菌群落结构仍然缺乏了解。因此,除了土壤化学和物理调查外,还通过 16S rRNA 基因 Illumina 扩增子测序分析了不同管理方式的盐渍土细菌群落,并进行了比较。结果表明,土地利用和土壤质地是影响匈牙利盐渍土壤细菌群落结构的主要因素。据观察,在未受干扰的牧场和草地上,土壤质地和植被覆盖率是影响细菌群落结构的决定性因素,主要体现在酸性杆菌门的水平上。沙质土壤质地促进了 Blastocatellia 类成员的大量繁殖,而在粘土含量较高的轻微扰动草甸土壤中,则以酸性杆菌科成员为主。属于 Ktedonobacteria 类的 OTU 大多出现在地热沉积物中,在草甸土壤中的含量相对较高。
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引用次数: 0
Temporal changes in the morphological and microbial diversity of biofilms on the surface of a submerged stone in the Danube River. 多瑙河水下石头表面生物膜形态和微生物多样性的时间变化。
IF 1.8 4区 生物学 Q3 BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-07-06 DOI: 10.1007/s42977-024-00228-0
Judit Makk, Marwene Toumi, Gergely Krett, Nóra Tünde Lange-Enyedi, Iris Schachner-Groehs, Alexander K T Kirschner, Erika Tóth

Epilithic biofilms are ubiquitous in large river environments and are crucial for biogeochemical processes, but their community structures and functions remain poorly understood. In this paper, the seasonal succession in the morphological structure and the taxonomic composition of an epilithic bacterial biofilm community at a polluted site of the Danube River were followed using electron microscopy, high-throughput 16S rRNA gene amplicon sequencing and multiplex/taxon-specific PCRs. The biofilm samples were collected from the same submerged stone and carried out bimonthly in the littoral zone of the Danube River, downstream of a large urban area. Scanning electron microscopy showed that the biofilm was composed of diatoms and a variety of bacteria with different morphologies. Based on amplicon sequencing, the bacterial communities were dominated by the phyla Pseudomonadota and Bacteroidota, while the most abundant archaea belonged to the phyla Nitrososphaerota and Nanoarchaeota. The changing environmental factors had an effect on the composition of the epilithic microbial community. Critical levels of faecal pollution in the water were associated with increased relative abundance of Sphaerotilus, a typical indicator of "sewage fungus", but the composition and diversity of the epilithic biofilms were also influenced by several other environmental factors such as temperature, water discharge and total suspended solids (TSS). The specific PCRs showed opportunistic pathogenic bacteria (e.g. Pseudomonas spp., Legionella spp., P. aeruginosa, L. pneumophila, Stenotrophomonas maltophilia) in some biofilm samples, but extended spectrum β-lactamase (ESBL) genes and macrolide resistance genes could not be detected.

附着性生物膜在大型河流环境中无处不在,对生物地球化学过程至关重要,但人们对其群落结构和功能的了解仍然很少。本文采用电子显微镜、高通量 16S rRNA 基因扩增子测序和多重/类群特异性 PCR 技术,对多瑙河污染地点的附生细菌生物膜群落的形态结构和分类组成的季节性演替进行了跟踪研究。生物膜样本是从多瑙河沿岸地区的同一块水下石头上采集的,每两个月采集一次,该地区位于一个大城市的下游。扫描电子显微镜显示,生物膜由硅藻和形态各异的多种细菌组成。根据扩增子测序,细菌群落以假单胞菌门和类杆菌门为主,而最丰富的古细菌属于亚硝化细菌门和纳米古细菌门。不断变化的环境因素对附岩微生物群落的组成产生了影响。水体中粪便污染的临界水平与 Sphaerotilus(一种典型的 "污水真菌 "指标)相对丰度的增加有关,但附生生物膜的组成和多样性也受到其他一些环境因素的影响,如温度、水排放和总悬浮固体(TSS)。特异性 PCR 在一些生物膜样本中发现了机会致病菌(如假单胞菌属、军团菌属、铜绿假单胞菌、嗜肺 杆菌、嗜麦芽血单胞菌),但未能检测到广谱 β-内酰胺酶(ESBL)基因和耐大环内酯类药物基因。
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Biologia futura
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