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Proteomics analysis identifies the ribosome associated coiled-coil domain-containing protein-124 as a novel interaction partner of nucleophosmin-1 蛋白质组学分析发现核糖体相关的含有卷曲结构域的蛋白-124是核磷蛋白-1的一个新的相互作用伙伴。
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-29 DOI: 10.1111/boc.202300049
Gamze Çakırca, Merve Tuzlakoğlu Öztürk, Pelin Telkoparan-Akillilar, Ömer Güllülü, Agit Çetinkaya, Uygar Halis Tazebay

Background Information

Coiled-coil domain-containing protein-124 (Ccdc124) is a conserved eukaryotic ribosome-associated RNA-binding protein which is involved in resuming ribosome activity after stress-related translational shutdown. Ccdc124 protein is also detected at cellular localizations devoid of ribosomes, such as the centrosome, or the cytokinetic midbody, but its translation-independent cellular function is currently unknown.

Results

By using an unbiased LC-MS/MS-based proteomics approach in human embryonic kidney (HEK293) cells, we identified novel Ccdc124 partners and mapped the cellular organization of interacting proteins, a subset of which are known to be involved in nucleoli biogenesis and function. We then identified a novel interaction between the cancer-associated multifunctional nucleolar marker nucleophosmin (Npm1) and Ccdc124, and we characterized this interaction both in HEK293 (human embryonic kidney) and U2OS (osteosarcoma) cells. As expected, in both types of cells, Npm1 and Ccdc124 proteins colocalized within the nucleolus when assayed by immunocytochemical methods, or by monitoring the localization of green fluorescent protein-tagged Ccdc124.

Conclusions

The nucleolar localization of Ccdc124 was impaired when Npm1 translocates from the nucleolus to the nucleoplasm in response to treatment with the DNA-intercalator and Topo2 inhibitor chemotherapeutic drug doxorubicin. Npm1 is critically involved in maintaining genomic stability by mediating various DNA-repair pathways, and over-expression of Npm1 or specific NPM1 mutations have been previously associated with proliferative diseases, such as acute myelogenous leukemia, anaplastic large-cell lymphoma, and solid cancers originating from different tissues.

Significance

Identification of Ccdc124 as a novel interaction partner of Nmp1 within the frame of molecular mechanisms involving nucleolar stress-sensing and DNA-damage response is expected to provide novel insights into the biology of cancers associated with aberrations in NPM1.

Coiled-coil domain containing protein-124 (Ccdc124)是一种保守的真核核糖体相关rna结合蛋白,参与在胁迫相关翻译关闭后恢复核糖体活性。Ccdc124蛋白也在没有核糖体的细胞定位中被检测到,如中心体或细胞动力学中间体,但其不依赖于翻译的细胞功能目前尚不清楚。通过在人胚胎肾(HEK293)细胞中使用无偏LC-MS/ ms - s蛋白质组学方法,我们鉴定了新的Ccdc124伴侣,并绘制了相互作用蛋白的细胞组织,其中一部分已知参与核仁生物发生和功能。然后,我们确定了癌症相关的多功能核仁标记物核磷蛋白(Npm1)和Ccdc124之间的一种新的相互作用,并在HEK293(人胚胎肾)和U2OS(骨肉瘤)细胞中表征了这种相互作用。正如预期的那样,在两种类型的细胞中,通过免疫细胞化学方法或通过监测绿色荧光蛋白标记的Ccdc124的定位来检测Npm1和Ccdc124蛋白在核核内共定位。当Npm1在dna插入剂和Topo2抑制剂化疗药物阿霉素的作用下从核核转移到核质时,Ccdc124的核核定位受损。Npm1通过介导各种dna修复途径,在维持基因组稳定性方面发挥着至关重要的作用,Npm1的过表达或特异性Npm1突变先前与增殖性疾病有关,如急性髓性白血病、间变性大细胞淋巴瘤和源自不同组织的实体癌。在涉及核核应力传感和dna损伤反应的分子机制框架内,Ccdc124作为Nmp1的新相互作用伙伴的鉴定有望为与NPM1畸变相关的癌症生物学提供新的见解。这篇文章受版权保护。版权所有。
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引用次数: 0
Liproxstatin-1 alleviates cartilage degradation by inhibiting chondrocyte ferroptosis in the temporomandibular joint 利普司他汀-1通过抑制颞下颌关节软骨细胞脱铁性病变来减轻软骨降解。
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-02 DOI: 10.1111/boc.202300042
Bei Cheng, Jun Zhang, Qinhao Shen, Zheyi Sun, Yingwei Luo, Yu Hu

Bground Information

Ferroptosis contributes to temporomandibular joint osteoarthritis (TMJOA) lesion development and is still poorly understood.

Results

In this study, we used different TMJOA animal models to examine whether ferroptosis was related to disease onset in TMJOA induced by monosodium iodoacetate (MIA), IL-1β, occlusion disorder (OD), and unilateral anterior crossbite (UAC). Immunohistochemical staining and Western blot analysis were used to detect ferroptosis- and cartilage degradation-related protein expression. Our results revealed reduced levels of the ferroptosis-related protein GPX4 in the cartilage layer, but the levels of ACSL4 and P53 were increased in the condyle. Injection of the ferroptosis inhibitor liproxstatin-1 (Lip-1) effectively decreased ACSL4, P53 and TRF expression. In vitro, IL-1β reduced cartilage extracellular matrix expression in mandibular condylar chondrocytes (MCCs). Lip-1 maintained the morphology and function of mitochondria and ameliorated the exacerbation of lipid peroxidation and reactive oxygen species (ROS) production induced by IL-1β.

Conclusion

These results suggest that chondrocyte ferroptosis plays an important role in the development and progression of TMJOA.

Significance

Inhibiting condylar chondrocyte ferroptosis could be a promising therapeutic strategy for TMJOA.

Ferroptosis导致颞下颌关节骨性关节炎(TMJOA)病变的发展,目前尚不清楚。在本研究中,我们使用不同的TMJOA动物模型来检测脱铁性贫血是否与碘乙酸单钠(MIA)、IL-1β、闭塞障碍(OD)和单侧前交叉牙(UAC)诱导的TMJOA的发病有关。免疫组织化学染色和蛋白质印迹分析用于检测脱铁性和软骨降解相关蛋白的表达。我们的研究结果显示,软骨层中脱铁相关蛋白GPX4的水平降低,但髁突中ACSL4和P53的水平升高。注射脱铁抑制剂liproxtatin-1(Lip-1)可有效降低ACSL4、P53和TRF的表达。在体外,IL-1β降低了髁突软骨细胞(MCC)中软骨细胞外基质的表达。Lip-1维持了线粒体的形态和功能,并改善了IL-1β诱导的脂质过氧化和活性氧(ROS)产生的恶化。这些结果表明软骨细胞脱铁在TMJOA的发展和进展中起着重要作用。抑制髁突软骨细胞脱铁可能是治疗TMJOA的一种有前景的策略。这篇文章受版权保护。保留所有权利。
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引用次数: 0
Astrocytic phagocytosis of myelin debris and reactive characteristics in vivo and in vitro 髓鞘碎片的星形细胞吞噬作用和体内外反应特性。
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-18 DOI: 10.1111/boc.202300057
Xiaohui Li, Zhibin Ding, Kexin Liu, Qing Wang, Lijuan Song, Zhi Chai, Jiezhong Yu, Dong Ma, Baoguo Xiao, Cungen Ma

Background Information

Persistent myelin debris can inhibit axonal regeneration, thereby hindering remyelination. Effective removal of myelin debris is essential to eliminate the interference of myelin debris in oligodendrocyte progenitor cell (OPC) activation, recruitment to demyelinating sites and/or differentiation into mature oligodendrocytes (OLs). In addition to microglia, it has been reported that astrocytic phagocytosis of myelin debris is a feature of early demyelination.

Results

In the present study, astrocytes effectively phagocytized myelin debris in vitro and in vivo. On the 5th day after injecting myelin debris into the brain, astrocytes were enriched in the area injected with myelin debris compared with microglia, and their ability to engulf myelin debris was stronger than that of microglia. When exposed to myelin debris, astrocytes phagocytizing myelin debris triggered self-apoptosis, accompanied by the activation of NF-κB, down-regulation of Nrf2, and the increase of ciliary neurotrophic factor (CNTF) and basic fibroblast growth factor (bFGF). However, the activation of astrocytic NF-κB did not influence the inflammatory cytokines IL-1β, IL-6, and TNF-α, and the anti-inflammatory factor IL-10. The proliferation of astrocytes and mobilization of OPCs in the subventricular zone were elevated on the 5th day after intracerebral injection of myelin debris.

Conclusions

The results suggested that myelin phagocytosis of astrocytes should help improve the microenvironment and promote myelin regeneration by increasing CNTF and bFGF within the central nervous system.

Significance

However, the molecular interaction of astrocytes acting as phagocytes remains to be further explored. Therefore, an improvement of astrocytes to phagocytize myelin debris may be a promising treatment measure to prevent demyelination and promote remyelination in MS and other diseases with prominent myelin injury.

引言:持久的髓鞘碎片可以抑制轴突再生,从而阻碍髓鞘再生。有效去除髓鞘碎片对于消除髓鞘碎片对少突胶质细胞祖细胞(OPC)活化、募集到脱髓鞘部位和/或分化为成熟少突胶质(OLs)的干扰至关重要。除了小胶质细胞外,据报道,星形细胞吞噬髓鞘碎片是早期脱髓鞘的一个特征。在本研究中,星形胶质细胞在体外和体内有效地吞噬髓鞘碎片。在将髓鞘碎片注入大脑后的第5天,与小胶质细胞相比,星形胶质细胞在注入髓鞘碎片的区域富集,并且它们吞噬髓鞘碎片的能力比小胶质细胞更强。当暴露于髓鞘碎片时,吞噬髓鞘碎片的星形胶质细胞触发自身凋亡,同时伴有NF-κB的激活、Nrf2的下调以及睫状神经营养因子(CNTF)和碱性成纤维细胞生长因子(bFGF)的增加。星形胶质细胞NF-κB的激活不影响炎性细胞因子IL-1β、IL-6和TNF-α以及抗炎因子IL-10。脑内注射髓鞘碎片后第5天,室下区星形胶质细胞的增殖和OPCs的动员增加。结果表明,星形胶质细胞的髓鞘吞噬作用应通过增加中枢神经系统内的CNTF和bFGF来帮助改善微环境并促进髓鞘再生。然而,星形胶质细胞作为吞噬细胞的分子相互作用还有待进一步探索。这篇文章受版权保护。保留所有权利。
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引用次数: 0
The magic of MAGI-1: A scaffolding protein with multi signalosomes and functional plasticity MAGI-1的神奇之处:一种具有多信号体和功能可塑性的支架蛋白。
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-10-09 DOI: 10.1111/boc.202300901
Katherine J. D. A. Excoffon, Christina L. Avila, Mahmoud S. Alghamri, Abimbola O. Kolawole

Biology of the Cell, 114, 185−198. https://doi.org/10.1111/boc.202200014

The above article, which was published online on 7 April 2022 in Wiley Online Library, failed to specify that Figure 4 is adapted and reproduced with permission from Wörthmüller, J. and Rüegg, C., MAGI1, a Scaffold Protein with Tumor Suppressive and Vascular Functions. Cells 202110(6), 1494. The authors apologize for this error.

中国生物医学工程学报,2014,33(2):444 - 444。https://doi.org/10.1111/boc.202200014The上述文章于2022年4月7日在Wiley在线图书馆在线发表,未注明图4是由Wörthmüller, J.和r egg, C., MAGI1,一种具有肿瘤抑制和血管功能的支架蛋白改编和复制的。细胞2021,10(6),1494。作者为这个错误道歉。
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引用次数: 0
Functions of actin-binding proteins in cilia structure remodeling and signaling 肌动蛋白结合蛋白在纤毛结构重塑和信号传导中的作用。
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-21 DOI: 10.1111/boc.202300026
Siqi Wang, Xin Wang, Congbin Pan, Ying Liu, Min Lei, Xiying Guo, Qingjie Chen, Xiaosong Yang, Changhan Ouyang, Zhanhong Ren

Cilia are microtubule-based organelles found on the surfaces of many types of cells, including cardiac fibroblasts, vascular endothelial cells, human retinal pigmented epithelial-1 (RPE-1) cells, and alveolar epithelial cells. These organelles can be classified as immotile cilia, referred to as primary cilia in mammalian cells, and motile cilia. Primary cilia are cellular sensors that detect extracellular signals; this is a critical function associated with ciliopathies, which are characterized by the typical clinical features of developmental disorders. Cilia are extensively studied organelles of the microtubule cytoskeleton. However, the ciliary actin cytoskeleton has rarely been studied. Clear evidence has shown that highly regulated actin cytoskeleton dynamics contribute to normal ciliary function. Actin-binding proteins (ABPs) play vital roles in filamentous actin (F-actin) morphology. Here, we discuss recent progress in understanding the roles of ABPs in ciliary structural remodeling and further downstream ciliary signaling with a focus on the molecular mechanisms underlying actin cytoskeleton-related ciliopathies.

纤毛是存在于多种细胞表面的微管细胞器,包括心脏成纤维细胞、血管内皮细胞、人视网膜色素上皮细胞(RPE-1)和肺泡上皮细胞。这些细胞器可分为静止纤毛(哺乳动物细胞中称为初级纤毛)和活动纤毛。初级纤毛是检测细胞外信号的细胞传感器;这是与纤毛病相关的关键功能,其特征是发育障碍的典型临床特征。纤毛是微管细胞骨架中被广泛研究的细胞器。然而,对纤毛肌动蛋白细胞骨架的研究却很少。明确的证据表明,高度调节的肌动蛋白细胞骨架动力学有助于正常的纤毛功能。肌动蛋白结合蛋白(ABPs)在丝状肌动蛋白(F-actin)形态中起着至关重要的作用。在这里,我们讨论了ABPs在纤毛结构重塑和进一步下游纤毛信号传导中的作用的最新进展,重点讨论了肌动蛋白细胞骨架相关纤毛病的分子机制。
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引用次数: 0
Mitochondria: At the crossroads between mechanobiology and cell metabolism 线粒体:处于机械生物学和细胞代谢的十字路口
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-16 DOI: 10.1111/boc.202300010
Émilie Su, Catherine Villard, Jean-Baptiste Manneville

Metabolism and mechanics are two key facets of structural and functional processes in cells, such as growth, proliferation, homeostasis and regeneration. Their reciprocal regulation has been increasingly acknowledged in recent years: external physical and mechanical cues entail metabolic changes, which in return regulate cell mechanosensing and mechanotransduction. Since mitochondria are pivotal regulators of metabolism, we review here the reciprocal links between mitochondrial morphodynamics, mechanics and metabolism. Mitochondria are highly dynamic organelles which sense and integrate mechanical, physical and metabolic cues to adapt their morphology, the organization of their network and their metabolic functions. While some of the links between mitochondrial morphodynamics, mechanics and metabolism are already well established, others are still poorly documented and open new fields of research. First, cell metabolism is known to correlate with mitochondrial morphodynamics. For instance, mitochondrial fission, fusion and cristae remodeling allow the cell to fine-tune its energy production through the contribution of mitochondrial oxidative phosphorylation and cytosolic glycolysis. Second, mechanical cues and alterations in mitochondrial mechanical properties reshape and reorganize the mitochondrial network. Mitochondrial membrane tension emerges as a decisive physical property which regulates mitochondrial morphodynamics. However, the converse link hypothesizing a contribution of morphodynamics to mitochondria mechanics and/or mechanosensitivity has not yet been demonstrated. Third, we highlight that mitochondrial mechanics and metabolism are reciprocally regulated, although little is known about the mechanical adaptation of mitochondria in response to metabolic cues. Deciphering the links between mitochondrial morphodynamics, mechanics and metabolism still presents significant technical and conceptual challenges but is crucial both for a better understanding of mechanobiology and for potential novel therapeutic approaches in diseases such as cancer.

代谢和力学是细胞结构和功能过程的两个关键方面,如生长、增殖、稳态和再生。近年来,人们越来越认识到它们的相互调节:外部物理和机械信号引起代谢变化,而代谢变化反过来调节细胞的机械感知和机械转导。由于线粒体是代谢的关键调节器,我们在这里回顾了线粒体形态动力学,力学和代谢之间的相互联系。线粒体是高度动态的细胞器,它感知和整合机械、物理和代谢信号,以适应其形态、网络组织和代谢功能。虽然线粒体形态动力学、力学和代谢之间的一些联系已经很好地建立起来,但其他的联系仍然很少记录,并开辟了新的研究领域。首先,已知细胞代谢与线粒体形态动力学相关。例如,线粒体的裂变、融合和嵴重塑允许细胞通过线粒体氧化磷酸化和细胞质糖酵解的贡献来微调其能量生产。其次,机械线索和线粒体机械特性的改变重塑和重组了线粒体网络。线粒体膜张力是调节线粒体形态动力学的决定性物理特性。然而,相反的联系假设形态动力学对线粒体力学和/或力学敏感性的贡献尚未得到证实。第三,我们强调线粒体力学和代谢是相互调节的,尽管我们对线粒体在响应代谢线索时的机械适应性知之甚少。破译线粒体形态动力学、力学和代谢之间的联系仍然存在重大的技术和概念挑战,但对于更好地理解机械生物学和癌症等疾病的潜在新治疗方法都至关重要。
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引用次数: 1
Issue Information 问题信息
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1002/nafm.10785
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引用次数: 0
Fostering innovation to solve the biomechanics of microbe–host interactions: Focus on the adhesive forces underlying Apicomplexa parasite biology 促进创新以解决微生物-宿主相互作用的生物力学问题:关注Apicocomplex寄生虫生物学背后的粘附力。
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-25 DOI: 10.1111/boc.202300016
Luis Vigetti, Isabelle Tardieux

The protozoa, Toxoplasma gondii and Plasmodium spp., are preeminent members of the Apicomplexa parasitic phylum in large part due to their public health and economic impact. Hence, they serve as model unicellular eukaryotes with which to explore the repertoire of molecular and cellular strategies that specific developmental morphotypes deploy to timely adjust to their host(s) in order to perpetuate. In particular, host tissue- and cell-invasive morphotypes termed zoites alternate extracellular and intracellular lifestyles, thereby sensing and reacting to a wealth of host-derived biomechanical cues over their partnership. In the recent years, biophysical tools especially related to real time force measurement have been introduced, teaching us how creative are these microbes to shape a unique motility system that powers fast gliding through a variety of extracellular matrices, across cellular barriers, in vascular systems or into host cells. Equally performant was this toolkit to start illuminating how parasites manipulate their hosting cell adhesive and rheological properties to their advantage. In this review, besides highlighting major discoveries along the way, we discuss the most promising development, synergy, and multimodal integration in active noninvasive force microscopy methods. These should in the near future unlock current limitations and allow capturing, from molecules to tissues, the many biomechanical and biophysical interplays over the dynamic host and microbe partnership.

弓形虫和疟原虫是Apicocomplex寄生门的杰出成员,这在很大程度上是由于它们对公众健康和经济的影响。因此,它们可以作为单细胞真核生物的模型,用来探索特定发育形态类型所采用的分子和细胞策略,以及时适应宿主,从而使其长期存在。特别是,被称为zoites的宿主组织和细胞侵袭性形态改变了细胞外和细胞内的生活方式,从而对宿主衍生的关于其伙伴关系的大量生物力学线索进行感知和反应。近年来,特别是与实时力测量相关的生物物理工具被引入,教会我们这些微生物是多么有创造力来塑造一个独特的运动系统,该系统能够快速滑过各种细胞外基质、穿过细胞屏障、在血管系统中或进入宿主细胞。同样具有性能的是,这个工具包开始阐明寄生虫如何操纵宿主细胞的粘附性和流变性以达到其优势。在这篇综述中,除了强调这一过程中的重大发现外,我们还讨论了主动无创力显微镜方法中最有前景的发展、协同作用和多模式集成。在不久的将来,这些应该会解开目前的局限性,并允许捕捉从分子到组织的许多生物力学和生物物理相互作用,包括宿主和微生物的动态伙伴关系。
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引用次数: 0
Special issue for biology of the cell “intracellular trafficking of viruses” 细胞生物学特刊"细胞内病毒运输"
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-25 DOI: 10.1111/boc.202300046
Raphael Gaudin, Maika S. Deffieu
In this special issue of Biology of the Cell, https:// onlinelibrary.wiley.com/doi/toc/10.1111/(ISSN)1768322X.viruses the authors explored the literature, describing how viruses exploit various host machineries to enter, replicate and exit from cells. The review by Gerber-Tichet & Kremer describes the variability in human adenoviruses immune response which is important for the design of virus-based vaccines. Focusing on skin cells, they outline the role of various adenovirus receptors for efficient infection of immune cells. They also highlight the importance of post-translational modifications of cell surface proteins in virus uptake (Gerber-Tichet Dienst & Kremer, 2022). Because virusreceptor interactions and subsequent viral fusion with host membrane cells are highly dynamic processes, advanced imaging tools are needed to shed light on virus entry. S. Padilla-Parra reviewed key microscopy approaches to study these steps in the context of HIV1 entry and fusion, including single particle tracking and spectral imaging (Padilla-Parra, 2023). The actin cytoskeleton plays a pivotal role during virus entry, but also exit from cells. The review by Serrano et al. describes how HIV-1 remodels the actin cytoskeleton during virus-receptor interactions, and proposes a model for the role of the actin cytoskeleton in HIV-1 assembly, budding, and release (Serrano et al., 2023). Viruses have evolved numerous strategies to travel within the cell from compartment-to-compartment. The review by Prasad & Bartenschlager describes how SARS-CoV-2 impacts intracellular trafficking pathways, including the hijacking of endosomal transport, modulation of ER/Golgi/endosomes membrane contact sites, inhibition of cellular mRNA nuclear export, perturba-
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引用次数: 0
Forces exerted and transduced by cancer-associated fibroblasts during cancer progression 在癌症进展过程中由癌症相关成纤维细胞施加和转导的力
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-24 DOI: 10.1111/boc.202200104
Madison E. Bates, Sarah Libring, Cynthia A. Reinhart-King

Although it is well-known that cancer-associated fibroblasts (CAFs) play a key role in regulating tumor progression, the effects of mechanical tissue changes on CAFs are understudied. Myofibroblastic CAFs (myCAFs), in particular, are known to alter tumor matrix architecture and composition, heavily influencing the mechanical forces in the tumor microenvironment (TME), but much less is known about how these mechanical changes initiate and maintain the myCAF phenotype. Additionally, recent studies have pointed to the existence of CAFs in circulating tumor cell clusters, indicating that CAFs may be subject to mechanical forces beyond the primary TME. Due to their pivotal role in cancer progression, targeting CAF mechanical regulation may provide therapeutic benefit. Here, we will discuss current knowledge and summarize existing gaps in how CAFs regulate and are regulated by matrix mechanics, including through stiffness, solid and fluid stresses, and fluid shear stress.

虽然众所周知,癌症相关成纤维细胞(CAFs)在调节肿瘤进展中起着关键作用,但机械组织变化对CAFs的影响尚未得到充分研究。特别是肌成纤维细胞CAFs (myCAFs),已知可以改变肿瘤基质结构和组成,严重影响肿瘤微环境(TME)中的机械力,但对这些机械变化如何启动和维持myCAF表型知之甚少。此外,最近的研究指出循环肿瘤细胞簇中存在CAFs,这表明CAFs可能受到原发TME以外的机械力的影响。由于它们在癌症进展中的关键作用,靶向CAF机械调节可能提供治疗益处。在这里,我们将讨论目前的知识,并总结现有的差距,在如何调节和调节的基质力学,包括通过刚度,固体和流体应力,流体剪切应力。
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引用次数: 0
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