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Do different exosome biogenesis pathways and selective cargo enrichment contribute to exosomal heterogeneity? 不同的外泌体生物发生途径和选择性货物富集是否有助于外泌体异质性?
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-13 DOI: 10.1111/boc.202200116
Shatakshi Shukla, Fatema Currim, Rajesh Singh

Exosomes are emerging intercellular communicators essential for cellular homeostasis during development and differentiation. The dysregulation in exosome-mediated communication alters cellular networking leads to developmental defects and chronic diseases. Exosomes are heterogeneous in nature depending on differences in size, membrane protein abundance, and differential cargo load. In this review, we have highlighted the latest developments in exosome biogenesis pathways, heterogeneity, and selective enrichment of various exosomal cargoes including proteins, nucleic acids, and mitochondrial DNA. Furthermore, the recent developments in the isolation techniques of exosome subpopulations have also been discussed. The comprehensive knowledge of extracellular vesicle (EV) heterogeneity and selective cargo enrichment during specific pathology may provide a clue for disease severity and early prognosis possibilities. The release of specific exosome subtypes is associated with the progression of specific disease type and hence a probable tool for therapeutics and biomarker development.

外泌体是细胞发育和分化过程中维持细胞稳态所必需的细胞间通讯体。外泌体介导的通讯失调改变了细胞网络,导致发育缺陷和慢性疾病。外泌体在性质上是异质的,这取决于大小、膜蛋白丰度和不同的载货量。在这篇综述中,我们重点介绍了外泌体生物发生途径、异质性和各种外泌体货物(包括蛋白质、核酸和线粒体DNA)的选择性富集的最新进展。此外,还讨论了外泌体亚群分离技术的最新进展。全面了解细胞外囊泡(EV)异质性和特定病理过程中选择性货物富集,可能为疾病严重程度和早期预后可能性提供线索。特异性外泌体亚型的释放与特定疾病类型的进展相关,因此可能是治疗和生物标志物开发的工具。
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引用次数: 2
Index des auteurs 作者索引
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-01 DOI: 10.1017/S0395264900046254
Bernard Brusset
ABÉLÈS Marc, 0989 AFFICHARD Joëlle, 0459 AGUIRRE ROJAS Carlos Antonio, 0001 AL AM Muzaffar, 0300 ALBERT Jean-Pierre, 0643, 0810, 0900 ALBERT-LLORCA Marlène, 0900 ALEXANDRE-BIDON Danièle, 0318, 0758, 0811, 0901, 0902, 1058, 1059, 1060 ALLEN Robert C , 0596 AMELANG James S., 0557 AMINO Yoshihiko, 0663 ANDREAU Jean, 0460, 0558 ANDRIEU Claire, 0371 Annales (Les), 0002, 0028, 0611 ANTOINE Jean-Philippe, 0029, 0812 ARABEYRE Patrick, 0059, 0319, 0903 ASSAYAG Jackie, 0030, 0208, 0248 ATTEN Michel, 0559 AURELL Martin, 0209, 0249, 0320 AUTRAND Françoise, 0372 AYÇOBERRY Pierre, 0117, 0177, 0182, 0210, 0301,0373,0374,0375,0753,0813
ABELÈS MARC,0989 Affichard Joëlle,0459 Aguirre Rojas Carlos Antonio,0001 Al Am Muzaffar,0300 Albert Jean-Pierre,0643,0810,0900 Albert Llorca Marlène,0900 Alexandre Bidon Daniêle,0318,0758,0811,0901,0902,1058,1059,1060 Allen Robert C,0596 Amelang James S.,0557 Amino Yoshihiko,0663 Andreau Jean,0460,0558 Andrieu Claire,0371 Annales(Les),0002,0028,0611 Antoine Jean-Philippe,0029,0812阿拉贝尔·帕特里克,0059,0319,0903袭击杰基,0030,0208,0248阿滕·米歇尔,0559 Aurell Martin,0209,0249,0320 Autrand Françoise,0372 AYÇOBERRY PIERRE,0117,0177,0182,0210,030103730374037507530813
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引用次数: 0
Dynamin-2 controls actin remodeling for efficient complement receptor 3-mediated phagocytosis 动力蛋白-2控制肌动蛋白重塑有效补体受体3介导的吞噬
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-24 DOI: 10.1111/boc.202300001
Anna Mularski, Ryszard Wimmer, Floriane Arbaretaz, Gabriel Le Goff, Manon Depierre, Florence Niedergang

Background information

Phagocytosis is the mechanism of the internalization of large particles, microorganisms and cellular debris. The complement pathway represents one of the first mechanisms of defense against infection and the complement receptor 3 (CR3), which is highly expressed on macrophages, is a major receptor for many pathogens and debris. Key to dissecting the mechanisms by which CR3-mediated phagocytosis occurs, is understanding how the complex actin binding protein machinery and associated regulators interact with actin during phagocytosis, from triggering of receptor, through to phagosome formation and closure.

Results

Here, we reveal that Dynamin-2 is recruited concomitantly with polymerized actin at the phagocytic cup and during phagosome formation and closure. Inhibition of Dynamin activity leads to stalled phagocytic cups and a decrease in the amount of F-actin at the site of phagocytosis.

Conclusions

Dynamin-2 regulates the assembly of the F-actin phagocytic cup for successful CR3-mediated phagocytosis.

Significance

These results highlight an important role for Dynamin-2 in actin remodeling downstream of integrins.

吞噬作用是大颗粒、微生物和细胞碎片内化的机制。补体途径是防御感染的首要机制之一,补体受体3 (CR3)在巨噬细胞上高度表达,是许多病原体和碎片的主要受体。分析cr3介导的吞噬发生机制的关键是了解在吞噬过程中,从受体的触发到吞噬体的形成和关闭,复杂的肌动蛋白结合蛋白机制和相关调节因子是如何与肌动蛋白相互作用的。结果在吞噬杯和吞噬体形成和关闭过程中,动力蛋白-2与聚合肌动蛋白一起被募集。动力蛋白活性的抑制导致吞噬杯的停滞和吞噬部位f -肌动蛋白数量的减少。结论动力蛋白-2调节f -肌动蛋白吞噬杯的组装,促进cr3介导的吞噬作用。这些结果突出了Dynamin-2在整合素下游肌动蛋白重塑中的重要作用。
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引用次数: 0
Annexin-A5 and annexin-A6 silencing prevents metastasis of breast cancer cells in zebrafish 膜联蛋白a5和膜联蛋白a6沉默可阻止斑马鱼乳腺癌细胞的转移
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-23 DOI: 10.1111/boc.202200110
Céline Gounou, Flora Bouvet, Benjamin Liet, Valérie Prouzet-Mauléon, Léna d'Agata, Etienne Harté, Françoise Argoul, Géraldine Siegfried, Richard Iggo, Abdel-Majid Khatib, Anthony Bouter

Background Information

During tumor invasion and metastasis processes, cancer cells are exposed to major compressive and shearing forces, due to their migration through extracellular matrix, dense cell areas, and complex fluids, which may lead to numerous plasma membrane damages. Cancer cells may survive to these mechanical stresses thanks to an efficient membrane repair machinery. Consequently, this machinery may constitute a relevant target to inhibit cancer cell dissemination.

Results

We show here that annexin-A5 (ANXA5) and ANXA6 participate in membrane repair of MDA-MB-231 cells, a highly invasive triple-negative breast cancer cell line. These crucial components of the membrane repair machinery are substantially expressed in breast cancer cells in correlation with their invasive properties. In addition, high expression of ANXA5 and ANXA6 predict poor prognosis in high-grade lung, gastric, and breast cancers. In zebrafish, the genetic inhibition of ANXA5 and ANXA6 leads to drastic reduction of tumor cell dissemination.

Conclusion

We conclude that the inhibition of ANXA5 and ANXA6 prevents membrane repair in cancer cells, which are thus unable to survive to membrane damage during metastasis.

Significance

This result opens a new therapeutic strategy based on targeting membrane repair machinery to inhibit tumor invasion and metastasis.

背景信息在肿瘤侵袭和转移过程中,癌症细胞由于通过细胞外基质、致密细胞区域和复杂液体迁移而暴露于主要的压缩力和剪切力,这可能导致大量的质膜损伤。癌症细胞可以在这些机械应力下存活下来,这要归功于高效的膜修复机器。因此,这种机制可能构成抑制癌症细胞扩散的相关靶点。结果我们发现膜联蛋白A5(ANXA5)和ANXA6参与了MDA-MB-231细胞的膜修复,这是一种高侵袭性三阴性乳腺癌症细胞系。膜修复机制的这些关键组成部分在乳腺癌症细胞中与它们的侵袭特性相关地显著表达。此外,ANXA5和ANXA6的高表达可预测高级别肺癌、胃癌和乳腺癌的不良预后。在斑马鱼中,ANXA5和ANXA6的基因抑制导致肿瘤细胞传播的急剧减少。结论ANXA5和ANXA6的抑制作用阻止了癌症细胞的膜修复,从而使其在转移过程中不能存活到膜损伤。意义这一结果为靶向膜修复机制抑制肿瘤侵袭和转移开辟了一种新的治疗策略。
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引用次数: 1
Issue Information 问题信息
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.1002/nml.21421
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引用次数: 0
Metabolic reprogramming in response to cell mechanics 响应细胞力学的代谢重编程
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-02-18 DOI: 10.1111/boc.202200108
Rebecca L. Splitt, Kris A. DeMali

Much attention has been dedicated to understanding how cells sense and respond to mechanical forces. The types of forces cells experience as well as the repertoire of cell surface receptors that sense these forces have been identified. Key mechanisms for transmitting that force to the cell interior have also emerged. Yet, how cells process mechanical information and integrate it with other cellular events remains largely unexplored. Here we review the mechanisms underlying mechanotransduction at cell-cell and cell-matrix adhesions, and we summarize the current understanding of how cells integrate information from the distinct adhesion complexes with cell metabolism.

人们一直致力于理解细胞是如何感知和响应机械力的。细胞所经历的力的类型以及感知这些力的细胞表面受体已经被确定。将这种力传递到细胞内部的关键机制也出现了。然而,细胞如何处理机械信息并将其与其他细胞事件整合在一起,在很大程度上仍未被探索。在这里,我们回顾了细胞-细胞和细胞-基质粘附的机械转导机制,并总结了目前对细胞如何整合来自不同粘附复合物的信息与细胞代谢的理解。
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引用次数: 2
The microtubule lattice: a brief historical perspective 微管晶格:一个简短的历史观点
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-02-12 DOI: 10.1111/boc.202300004
Denis Chrétien, Charlotte Guyomar

At first glance, the structure of a microtubule is simple. Globular α- and β-tubulin subunits form constitutive heterodimers that align head-to-tail in protofilaments. In the most common configuration, 13 protofilaments associate laterally with a slight longitudinal stagger that results in a left-handed 3-start helix featuring lateral associations between tubulin subunits. This seemingly straightforward description is actually based on almost half a century of research aimed at understanding how tubulin dimers interact within the microtubule lattice. But while we start to have a good overview of their architecture in vitro, our knowledge of microtubule-lattice organization in vivo is nowhere near to being complete.

乍一看,微管的结构很简单。球状α-和β-微管蛋白亚基构成异源二聚体,在原丝中首尾相连。在最常见的结构中,13根原丝横向结合,有轻微的纵向交错,形成一个左旋的3开始螺旋,具有微管蛋白亚基之间的横向结合。这个看似简单的描述实际上是基于近半个世纪的研究,旨在了解微管晶格内微管蛋白二聚体如何相互作用。但是,当我们开始对它们在体外的结构有一个很好的概述时,我们对体内微管晶格组织的了解还远远没有完成。
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引用次数: 0
A journey in UPR modelling 普遍定期审议建模之旅
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-02-07 DOI: 10.1111/boc.202200111
Ilaria Pontisso, Roberto Ornelas-Guevara, Laurent Combettes, Geneviève Dupont

Protein folding and protein maturation largely occur in the controlled environment of the Endoplasmic Reticulum (ER). Perturbation to the correct functioning of this organelle leads to altered proteostasis and accumulation of misfolded proteins in the ER lumen. This condition is commonly known as ER stress and is appearing as an important contributor in the pathogenesis of several human diseases. Monitoring of the quality control processes is mediated by the Unfolded Protein Response (UPR). This response consists in a complex network of signalling pathways that aim to restore protein folding and ER homeostasis. Conditions in which UPR is not able to overcome ER stress lead to a switch of the UPR signalling program from an adaptive to a pro-apoptotic one, revealing a key role of UPR in modulating cell fate decisions. Because of its high complexity and its involvement in the regulation of different cellular outcomes, UPR has been the centre of the development of computational models, which tried to better dissect the role of UPR or of its specific components in several contexts. In this review, we go through the existing mathematical models of UPR. We emphasize how their study contributed to an improved characterization of the role of this intricate response in the modulation of cellular functions.

蛋白质折叠和成熟主要发生在内质网(ER)的受控环境中。对该细胞器正常功能的干扰导致内质网腔内蛋白质稳态改变和错误折叠蛋白质的积累。这种情况通常被称为内质网应激,并且在几种人类疾病的发病机制中扮演着重要的角色。未折叠蛋白反应(UPR)介导了质量控制过程的监测。这种反应包括一个复杂的信号通路网络,旨在恢复蛋白质折叠和内质网稳态。在UPR无法克服内质网应激的情况下,UPR信号传导程序从适应性转向促凋亡,揭示了UPR在调节细胞命运决定中的关键作用。由于其高度复杂性及其参与不同细胞结果的调节,UPR一直是计算模型发展的中心,这些模型试图更好地分析UPR或其特定组成部分在几种情况下的作用。本文回顾了普遍定期审议的现有数学模型。我们强调他们的研究如何有助于改善这种复杂反应在细胞功能调节中的作用。
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引用次数: 1
Get in and get out: Remodeling of the cellular actin cytoskeleton upon HIV-1 infection 进出:HIV-1感染时细胞肌动蛋白骨架的重塑
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-04 DOI: 10.1111/boc.202200085
Thomas Serrano, Stéphane Frémont, Arnaud Echard

The human immunodeficiency virus type 1 (HIV-1) is an intracellular pathogen whose replication cycle strictly depends on the host cell molecular machinery. HIV-1 crosses twice the plasma membrane, to get in and to get out of the cell. Therefore, the first and the last line of intracellular component encountered by the virus is the cortical actin network. Here, we review the role of actin and actin-related proteins in HIV-1 entry, assembly, budding, and release. We first highlight the mechanisms controlling actin polymerization at the entry site that promote the clustering of HIV-1 receptors, a crucial step for the virus to fuse with the plasma membrane. Then, we describe how actin is transiently depolymerized locally to allow the capsid to cross the actin cortex, before migrating towards the nucleus. Finally, we review the role of several actin-binding proteins in actin remodeling events required for membrane deformation and curvature at the viral assembly site as well as for virus release. Strikingly, it appears that common actin-regulating pathways are involved in viral entry and exit. However, while the role of actin remodeling during entry is well understood, this is not the case during exit. We discuss remaining challenges regarding the actin-dependent mechanisms involved in HIV-1 entry and exit, and how they could be overcome.

人类免疫缺陷病毒1型(HIV-1)是一种细胞内病原体,其复制周期严格依赖于宿主细胞分子机制。HIV-1穿过两次质膜,进入和离开细胞。因此,病毒遇到的第一行和最后一行细胞内成分是皮质肌动蛋白网络。在这里,我们回顾了肌动蛋白和肌动蛋白相关蛋白在HIV-1进入、组装、出芽和释放中的作用。我们首先强调了控制进入位点肌动蛋白聚合的机制,这种聚合促进了HIV-1受体的聚集,这是病毒与质膜融合的关键步骤。然后,我们描述了肌动蛋白如何在局部瞬间解聚,以允许衣壳穿过肌动蛋白皮层,然后迁移到细胞核。最后,我们回顾了几种肌动蛋白结合蛋白在肌动蛋白重塑事件中的作用,这些事件是病毒组装位点的膜变形和曲率以及病毒释放所必需的。引人注目的是,常见的肌动蛋白调节途径似乎参与了病毒的进入和退出。然而,虽然肌动蛋白重塑在进入过程中的作用被很好地理解,但在退出过程中却并非如此。我们讨论了在HIV-1进入和退出过程中所涉及的行动蛋白依赖机制,以及如何克服这些挑战。
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引用次数: 3
Dissection of the autophagic route in oocytes from atretic follicles 闭锁卵泡卵母细胞自噬途径的解剖
IF 2.7 4区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-26 DOI: 10.1111/boc.202200046
Abraham Castro-Cruz, Olga M. Echeverría, Luis Sánchez-Sánchez, Israel Muñoz-Velasco, Silvia Juárez-Chavero, Nayeli Torres-Ramírez, Gerardo H. Vázquez-Nin, María Luisa Escobar

Background Information

Autophagy is a conserved process that functions as a cytoprotective mechanism; it may function as a cell death process called programmed cell death type II. There is considerable evidence for the presence of autophagic cell death during oocyte elimination in prepubertal rats. However, the mechanisms involved in this process have not been deciphered.

Results

Our observations revealed autophagic cell death in oocytes with increased labeling of the autophagic proteins Beclin 1, light chain 3 A (LC3 A), and lysosomal-associated membrane protein 1 (Lamp1). Furthermore, mTOR and phosphorylated (p)-mTOR (S2448) proteins were significantly decreased in oocytes with increased levels of autophagic proteins, indicating autophagic activation. Moreover, phosphorylated protein kinase B (p-AKT) was not expressed by oocytes, but mitogen-activated protein kinase/extracellular signalregulated kinase (MAPK/ERK) signaling was observed. Additionally, selective and elevated mitochondrial degradation was identified in altered oocytes.

Conclusions

All these results suggest that mTOR downregulation, which promotes autophagy, could be mediated by low energy levels and sustained starvation involving the phosphoinositide 3-kinase (PI3K)/AKT/mTOR and MAPK/ERK pathways.

Significance

In this work, we analyzed the manner in which autophagy is carried out in oocytes undergoing autophagic cell death by studying the behavior of proteins involved in different steps of the autophagic pathway.

自噬是一种保守的细胞保护机制;它可能是一种称为程序性细胞死亡II型的细胞死亡过程。有相当多的证据表明,在青春期前大鼠卵母细胞消除过程中存在自噬细胞死亡。然而,这一过程所涉及的机制尚未被破译。结果我们的观察表明,卵母细胞的自噬细胞死亡伴随着自噬蛋白Beclin 1、轻链3a (lc3a)和溶酶体相关膜蛋白1 (Lamp1)的标记增加。此外,随着自噬蛋白水平的升高,卵母细胞中mTOR和磷酸化(p)-mTOR (S2448)蛋白显著降低,表明自噬激活。此外,卵母细胞不表达磷酸化蛋白激酶B (p-AKT),但观察到丝裂原活化蛋白激酶/细胞外信号调节激酶(MAPK/ERK)信号传导。此外,在改变的卵母细胞中发现了选择性和升高的线粒体降解。结论mTOR下调促进细胞自噬可能通过低能量水平和持续饥饿介导,涉及PI3K /AKT/mTOR和MAPK/ERK通路。在这项工作中,我们通过研究参与自噬途径不同步骤的蛋白质的行为,分析了自噬在经历自噬细胞死亡的卵母细胞中进行的方式。
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引用次数: 0
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Biology of the Cell
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