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ECG-surv: A deep learning-based model to predict time to 1-year mortality from 12-lead electrocardiogram. ECG-surv:基于深度学习的模型,通过 12 导联心电图预测 1 年死亡时间。
IF 5.5 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-30 DOI: 10.1016/j.bj.2024.100732
Ching-Heng Lin, Zhi-Yong Liu, Jung-Sheng Chen, Yang C Fann, Ming-Shien Wen, Chang-Fu Kuo

Background: Electrocardiogram (ECG) abnormalities have demonstrated potential as prognostic indicators of patient survival. However, the traditional statistical approach is constrained by structured data input, limiting its ability to fully leverage the predictive value of ECG data in prognostic modeling.

Methods: This study aims to introduce and evaluate a deep-learning model to simultaneously handle censored data and unstructured ECG data for survival analysis. We herein introduce a novel deep neural network called ECG-surv, which includes a feature extraction neural network and a time-to-event analysis neural network. The proposed model is specifically designed to predict the time to 1-year mortality by extracting and analyzing unique features from 12-lead ECG data. ECG-surv was evaluated using both an independent test set and an external set, which were collected using different ECG devices.

Results: The performance of ECG-surv surpassed that of the Cox proportional model, which included demographics and ECG waveform parameters, in predicting 1-year all-cause mortality, with a significantly higher concordance index (C-index) in ECG-surv than in the Cox model using both the independent test set (0.860 [95% CI: 0.859- 0.861] vs. 0.796 [95% CI: 0.791- 0.800]) and the external test set (0.813 [95% CI: 0.807- 0.814] vs. 0.764 [95% CI: 0.755- 0.770]). ECG-surv also demonstrated exceptional predictive ability for cardiovascular death (C-index of 0.891 [95% CI: 0.890- 0.893]), outperforming the Framingham risk Cox model (C-index of 0.734 [95% CI: 0.715-0.752]).

Conclusion: ECG-surv effectively utilized unstructured ECG data in a survival analysis. It outperformed traditional statistical approaches in predicting 1-year all-cause mortality and cardiovascular death, which makes it a valuable tool for predicting patient survival.

背景:心电图(ECG)异常已被证明具有作为患者生存预后指标的潜力。然而,传统的统计方法受到结构化数据输入的限制,无法充分利用心电图数据在预后建模中的预测价值:本研究旨在引入并评估一种深度学习模型,该模型可同时处理删减数据和非结构化心电图数据,用于生存分析。我们在此介绍一种名为 ECG-surv 的新型深度神经网络,它包括一个特征提取神经网络和一个时间到事件分析神经网络。该模型专门设计用于通过提取和分析 12 导联心电图数据中的独特特征来预测 1 年死亡率。使用独立测试集和外部集对 ECG-surv 进行了评估,这些测试集是使用不同的心电图设备收集的:结果:在预测 1 年全因死亡率方面,ECG-surv 的性能超过了包含人口统计学和心电图波形参数的 Cox 比例模型,在使用独立测试集时,ECG-surv 的一致性指数(C-index)明显高于 Cox 模型(0.860 [95% CI: 0.859- 0.861] vs. 0.796 [95% CI: 0.791- 0.800])和外部测试集(0.813 [95% CI: 0.807- 0.814] vs. 0.764 [95% CI: 0.755- 0.770])。ECG-surv对心血管死亡的预测能力(C指数为0.891 [95% CI:0.890- 0.893])也非常出色,优于Framingham风险Cox模型(C指数为0.734 [95% CI:0.715-0.752]):ECG-surv在生存分析中有效地利用了非结构化心电图数据。结论:ECG-surv 在生存分析中有效地利用了非结构化心电图数据,在预测 1 年全因死亡率和心血管死亡方面优于传统的统计方法,是预测患者生存的重要工具。
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引用次数: 0
Antrodia cinnamomea extract alleviates bleomycin-induced pulmonary fibrosis in mice by inhibiting the mTOR pathway 蚂蚁肉桂提取物通过抑制mTOR途径减轻博莱霉素诱导的小鼠肺纤维化。
IF 4.1 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-26 DOI: 10.1016/j.bj.2024.100720

Background

Pulmonary fibrosis is a progressive diffuse parenchymal lung disorder with a high mortality rate. Studies have indicated that injured lung tissues release various pro-inflammatory factors, and produce a large amount of nitric oxide. There is also accumulation of collagen and oxidative stress-induced injury, collectively leading to pulmonary fibrosis. Antrodia cinnamomea is an endemic fungal growth in Taiwan, and its fermented extracts exert anti-inflammatory effects to alleviate liver damages. Hence, we hypothesized and tested the feasibility of using A. cinnamomea extracts for treatment of pulmonary fibrosis.

Methods

The TGF-β1-induced human lung fibroblast cells (MRC-5) in vitro cell assay were used to evaluate the effects of A. cinnamomea extracts on the collagen production in MRC-5. Eight-week-old ICR mice were intratracheally administered bleomycin and then fed with an A. cinnamomea extract on day 3 post-administration of bleomycin. At day 21 post-bleomycin administration, the pulmonary functional test, the expression level of inflammation- and fibrosis-related genes in the lung tissue, and the histopathological change were examined.

Results

The A. cinnamomea extract significantly attenuated the expression level of collagen in the TGF-β1-induced MRC-5 cells. In the A. cinnamome-treated bleomycin-induced lung fibrotic mice, the bodyweight increased, pulmonary functions improved, the lung tissues expression level of inflammatory factor and the fibrotic indicator were decreased, and the histopathological results showed the reduction of thickening of the inter-alveolar septa.

Conclusions

The Antrodia cinnamomea extract significant protects mice against bleomycin-induced lung injuries through improvement of body weight gain and lung functions, and attenuation of expression of inflammatory and fibrotic indicators.
背景:肺纤维化是一种进行性弥漫性肺实质疾病,死亡率很高。研究表明,损伤的肺组织会释放各种促炎因子,并产生大量一氧化氮。此外,胶原蛋白的积累和氧化应激引起的损伤共同导致了肺纤维化。肉桂蕨是台湾特有的真菌,其发酵提取物具有抗炎作用,可减轻肝损伤。因此,我们假设并测试了使用肉桂提取物治疗肺纤维化的可行性:方法:采用TGF-β1诱导的人肺成纤维细胞(MRC-5)体外细胞试验,评估肉桂提取物对MRC-5胶原蛋白生成的影响。对 8 周大的 ICR 小鼠气管内注射博莱霉素,然后在注射博莱霉素后的第 3 天喂食肉桂萃取物。在使用博莱霉素后第 21 天,检测肺功能测试、肺组织中炎症和纤维化相关基因的表达水平以及组织病理学变化:结果:肉桂提取物能显著降低TGF-β1诱导的MRC-5细胞中胶原蛋白的表达水平。肉桂提取物治疗博莱霉素诱导的肺纤维化小鼠体重增加,肺功能改善,肺组织炎症因子和纤维化指标表达水平降低,组织病理学结果显示肺泡间质增厚减轻:结论:肉桂酸蚂蚁提取物能显著保护小鼠免受博莱霉素诱导的肺损伤,改善小鼠的体重增加和肺功能,减少炎症和纤维化指标的表达。
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引用次数: 0
Pharmaceutical cost savings from the treatment of oncology patients in clinical trials. 临床试验中治疗肿瘤患者节省的医药成本。
IF 5.5 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-26 DOI: 10.1016/j.bj.2024.100742
Borja Gómez Mediavilla, Paloma Lanza León, Virginia Martínez Callejo, David Cantarero Prieto, María Lanza Postigo, Matilde Salcedo Lambea, Yolanda Blanco Mesonero, María Ochagavia Sufrategui, Ignacio Durán, Carmen María Sarabia Cobo

Objective: The aim of this study was twofold: to assess the annual pharmaceutical savings associated with the treatment of cancer patients at Marqués de Valdecilla University Hospital and to estimate the cost of innovative antineoplastic therapies that patients receive as experimental treatment, both during clinical trials throughout 2020.

Material and methods: An observational and financial analysis of the drug cost related to clinical trials was applied. Direct cost savings to the Regional Health System of Cantabria and the cost of innovative therapies used as an experimental treatment in clinical trials were quantified.

Results: This study includes 38 clinical trials with a sample of 101 patients. The clinical trials analyzed provide a total cost savings of €603,350.21 and an average cost saving of €6,630.22 per patient. Furthermore, the total investment amounts to €789,892.67, with an average investment of €15,488.09 per patient.

Conclusions: Clinical trials are essential for the advancement of science. Furthermore, clinical trials can be a significant source of income for both hospitals and Regional Health Systems, contributing to their financial sustainability.

目的:这项研究有两个目的:评估巴尔德西亚侯爵大学医院每年在治疗癌症患者方面节省的药品费用;估算患者在 2020 年临床试验期间作为试验性治疗接受创新抗肿瘤疗法的费用:对与临床试验相关的药物成本进行了观察和财务分析。对坎塔布里亚地区卫生系统直接节省的费用和临床试验中作为试验性治疗的创新疗法的费用进行了量化:这项研究包括38项临床试验,样本为101名患者。所分析的临床试验共节约成本603,350.21欧元,平均每位患者节约成本6,630.22欧元。此外,总投资额为 789,892.67 欧元,每位患者平均投资额为 15,488.09 欧元:临床试验对科学进步至关重要。此外,临床试验还是医院和地区医疗系统的重要收入来源,有助于其财务可持续性。
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引用次数: 0
Applications of Deep Learning in Trauma Radiology: A Narrative Review. 深度学习在创伤放射学中的应用:叙述性综述。
IF 5.5 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-26 DOI: 10.1016/j.bj.2024.100743
Chi-Tung Cheng, Chun-Hsiang Ooyang, Shih-Ching Kang, Chien-Hung Liao

Diagnostic imaging is essential in modern trauma care for initial evaluation and identifying injuries requiring intervention. Deep learning (DL) has become mainstream in medical image analysis and has shown promising efficacy for classification, segmentation, and lesion detection. This narrative review provides the fundamental concepts for developing DL algorithms in trauma imaging and presents an overview of current progress in each modality. DL has been applied to detect free fluid on Focused Assessment with Sonography for Trauma (FAST), traumatic findings on chest and pelvic X-rays, and computed tomography (CT) scans, identify intracranial hemorrhage on head CT, detect vertebral fractures, and identify injuries to organs like the spleen, liver, and lungs on abdominal and chest CT. Future directions involve expanding dataset size and diversity through federated learning, enhancing model explainability and transparency to build clinician trust, and integrating multimodal data to provide more meaningful insights into traumatic injuries. Though some commercial artificial intelligence products are Food and Drug Administration-approved for clinical use in the trauma field, adoption remains limited, highlighting the need for multi-disciplinary teams to engineer practical, real-world solutions. Overall, DL shows immense potential to improve the efficiency and accuracy of trauma imaging, but thoughtful development and validation are critical to ensure these technologies positively impact patient care.

在现代创伤护理中,诊断成像对于初步评估和识别需要干预的损伤至关重要。深度学习(DL)已成为医学图像分析的主流,并在分类、分割和病变检测方面显示出良好的效果。这篇叙述性综述提供了在创伤成像中开发深度学习算法的基本概念,并概述了每种模式的当前进展。DL 已被用于检测创伤超声聚焦评估 (FAST) 中的游离液体、胸部和骨盆 X 光片以及计算机断层扫描 (CT) 扫描中的创伤发现、头部 CT 中的颅内出血、脊椎骨折检测,以及腹部和胸部 CT 中脾脏、肝脏和肺脏等器官的损伤。未来的发展方向包括:通过联合学习扩大数据集的规模和多样性;提高模型的可解释性和透明度,以建立临床医生的信任;整合多模态数据,为创伤性损伤提供更有意义的见解。尽管一些商业人工智能产品已获得食品药品管理局的批准,可用于创伤领域的临床应用,但其应用仍然有限,这凸显了多学科团队设计实用、真实世界解决方案的必要性。总体而言,DL 在提高创伤成像的效率和准确性方面显示出巨大的潜力,但要确保这些技术对患者护理产生积极影响,深思熟虑的开发和验证至关重要。
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引用次数: 0
The Effect and Mechanism of Astragalus Polysaccharides on T Cells and Macrophages in Inhibiting Prostate Cancer. 黄芪多糖对T细胞和巨噬细胞抑制前列腺癌的作用和机制
IF 5.5 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-25 DOI: 10.1016/j.bj.2024.100741
Ching-Yuan Wu, Yao-Hsu Yang, Yu-Shih Lin, Li-Hsin Shu, Hung-Te Liu, Chung-Kuang Lu, Yu-Huei Wu, Yu-Heng Wu

Background: The impact and underlying mechanisms of astragalus polysaccharide (APS) on prostate cancer, particularly its role in immunomodulation, remain inadequately elucidated.

Methods: This study employed the XTT assay for assessing proliferation in prostate cancer cells and macrophages. T cell proliferation was determined using the Carboxyfluorescein diacetate succinimidyl ester labeling assay. APS's effect on T cells and macrophages was scrutinized via flow cytometry, Western blot analysis, ELISA, quantitative PCR and cytokine membrane arrays. The effect of APS on interaction between PD-L1 and PD-1 was investigated by the PD-L1/PD-1 homogeneous assay. Additionally, the impact of conditioned medium from T cells and macrophages on PC-3 cell migration was explored through migration assays.

Results: It was observed that APS at concentrations of 1 and 5 mg/mL enhanced the proliferation of CD8+ T cells. At a concentration of 5 mg/mL, APS activated both CD4+ and CD8+ T cells, attenuated PD-L1 expression in prostate cancer cells stimulated with interferon gamma (IFN-γ) or oxaliplatin, and moderately decreased the population of PD-1+ CD4+ and PD-1+ CD8+ T cells. Furthermore, APS at this concentration impeded the interaction between PD-L1 and PD-1, inhibited the promotion of prostate cancer migration mediated by RAW 264.7 cells, THP-1 cells, CD4+ T cells, and CD8+ T cells, and initiated apoptosis in prostate cancer cells treated with conditioned medium from APS (5 mg/mL)-treated CD8+ T cells, RAW 264.7 cells, or THP-1 cells.

Conclusion: The findings indicate a potential role of 5 mg/mL APS in modulating the PD-1/PD-L1 pathway and influencing the immune response, encompassing T cells and macrophages. Consequently, further in vivo research is recommended to assess the efficacy of APS.

背景:黄芪多糖(APS)对前列腺癌的影响及其内在机制,尤其是其在免疫调节中的作用,仍未得到充分阐明:本研究采用 XTT 法评估前列腺癌细胞和巨噬细胞的增殖情况。T细胞增殖采用羧基荧光素二乙酸琥珀酰亚胺酯标记法进行测定。通过流式细胞术、Western 印迹分析、酶联免疫吸附试验、定量 PCR 和细胞因子膜阵列,仔细研究了 APS 对 T 细胞和巨噬细胞的影响。通过 PD-L1/PD-1 均匀试验研究了 APS 对 PD-L1 和 PD-1 之间相互作用的影响。此外,还通过迁移试验探讨了 T 细胞和巨噬细胞的条件培养基对 PC-3 细胞迁移的影响:结果:观察发现,浓度为 1 毫克/毫升和 5 毫克/毫升的 APS 可增强 CD8+ T 细胞的增殖。浓度为 5 毫克/毫升时,APS 可激活 CD4+ 和 CD8+ T 细胞,减轻受γ干扰素(IFN-γ)或奥沙利铂刺激的前列腺癌细胞中 PD-L1 的表达,并适度减少 PD-1+ CD4+ 和 PD-1+ CD8+ T 细胞的数量。此外,该浓度的APS还阻碍了PD-L1和PD-1之间的相互作用,抑制了由RAW 264.7细胞、THP-1细胞、CD4+ T细胞和CD8+ T细胞介导的前列腺癌迁移的促进作用,并启动了经APS(5 mg/mL)处理的CD8+ T细胞、RAW 264.7细胞或THP-1细胞的条件培养基处理的前列腺癌细胞的凋亡:研究结果表明,5 mg/mL APS 在调节 PD-1/PD-L1 通路和影响免疫反应(包括 T 细胞和巨噬细胞)方面具有潜在作用。因此,建议进一步开展体内研究,以评估 APS 的疗效。
{"title":"The Effect and Mechanism of Astragalus Polysaccharides on T Cells and Macrophages in Inhibiting Prostate Cancer.","authors":"Ching-Yuan Wu, Yao-Hsu Yang, Yu-Shih Lin, Li-Hsin Shu, Hung-Te Liu, Chung-Kuang Lu, Yu-Huei Wu, Yu-Heng Wu","doi":"10.1016/j.bj.2024.100741","DOIUrl":"https://doi.org/10.1016/j.bj.2024.100741","url":null,"abstract":"<p><strong>Background: </strong>The impact and underlying mechanisms of astragalus polysaccharide (APS) on prostate cancer, particularly its role in immunomodulation, remain inadequately elucidated.</p><p><strong>Methods: </strong>This study employed the XTT assay for assessing proliferation in prostate cancer cells and macrophages. T cell proliferation was determined using the Carboxyfluorescein diacetate succinimidyl ester labeling assay. APS's effect on T cells and macrophages was scrutinized via flow cytometry, Western blot analysis, ELISA, quantitative PCR and cytokine membrane arrays. The effect of APS on interaction between PD-L1 and PD-1 was investigated by the PD-L1/PD-1 homogeneous assay. Additionally, the impact of conditioned medium from T cells and macrophages on PC-3 cell migration was explored through migration assays.</p><p><strong>Results: </strong>It was observed that APS at concentrations of 1 and 5 mg/mL enhanced the proliferation of CD8+ T cells. At a concentration of 5 mg/mL, APS activated both CD4+ and CD8+ T cells, attenuated PD-L1 expression in prostate cancer cells stimulated with interferon gamma (IFN-γ) or oxaliplatin, and moderately decreased the population of PD-1+ CD4+ and PD-1+ CD8+ T cells. Furthermore, APS at this concentration impeded the interaction between PD-L1 and PD-1, inhibited the promotion of prostate cancer migration mediated by RAW 264.7 cells, THP-1 cells, CD4+ T cells, and CD8+ T cells, and initiated apoptosis in prostate cancer cells treated with conditioned medium from APS (5 mg/mL)-treated CD8+ T cells, RAW 264.7 cells, or THP-1 cells.</p><p><strong>Conclusion: </strong>The findings indicate a potential role of 5 mg/mL APS in modulating the PD-1/PD-L1 pathway and influencing the immune response, encompassing T cells and macrophages. Consequently, further in vivo research is recommended to assess the efficacy of APS.</p>","PeriodicalId":8934,"journal":{"name":"Biomedical Journal","volume":" ","pages":"100741"},"PeriodicalIF":5.5,"publicationDate":"2024-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140856037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Guizhi Fuling Wan ameliorates concanavalin A-induced autoimmune hepatitis in mice. 桂枝茯苓丸可改善小鼠由金刚烷胺 A 引起的自身免疫性肝炎。
IF 5.5 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-25 DOI: 10.1016/j.bj.2024.100731
Shun-Li Kuo, Chun-Han Su, Kuei-Hung Lai, Yu-Chia Chang, Jyh-Sheng You, Hsin-Hsin Peng, Chun-Hong Chen, Chi-Chen Lin, Po-Jen Chen, Tsong-Long Hwan

Background: Autoimmune hepatitis (AIH) is an immune-mediated hepatic disease associated with intense complications. AIH is more common in females and needs effective drugs to treat. Guizhi Fuling Wan (GZFLW) is a traditional Chinese herbal formula used to treat various gynecologic diseases. In this study, we aim to extend the new use of GZFLW for AIH.

Methods: The tandem MS-based analysis was used to identify secondary metabolites in GZFLW. Therapeutic effects of GZFLW were tested in a concanavalin A (Con A)-induced AIH model in mice. Ethnopharmacological mechanisms underlying the antiapoptotic, antioxidant, and immunomodulatory protective effects were determined.

Results: Oral administration of GZFLW attenuates AIH in a Con A-induced hepatotoxic model in vivo. The tandem MS-based analysis identified 15 secondary metabolites in GZFLW. The Con A-induced AIH syndromes, including hepatic apoptosis, inflammation, reactive oxygen species accumulation, function failure, and mortality, were significantly alleviated by GZFLW in mice. Mechanistically, GZFLW restrained the caspase-dependent apoptosis, restored the antioxidant system, and decreased pro-inflammatory cytokine production in the livers of Con A-treated mice. Besides, GZFLW repressed the Con A-induced hepatic infiltration of inflammatory cells, splenic T cell activation, and splenomegaly in mice.

Conclusions: Our findings demonstrate the applicable potential of GZFLW in treating AIH. It prompts further investigation of GZFLW as a treatment option for AIH and possibly other hepatic diseases.

背景:自身免疫性肝炎(AIH)是一种免疫介导的肝病,伴有严重的并发症。自身免疫性肝炎多见于女性,需要有效的药物来治疗。桂枝茯苓丸(GZFLW)是一种用于治疗各种妇科疾病的传统中药配方。本研究旨在拓展桂枝茯苓丸治疗 AIH 的新用途:方法:采用串联质谱分析法鉴定 GZFLW 中的次生代谢物。方法:采用串联质谱分析法鉴定了 GZFLW 中的次生代谢物,并在小鼠由 Con A 诱导的 AIH 模型中测试了 GZFLW 的治疗效果。确定了抗细胞凋亡、抗氧化和免疫调节保护作用的民族药理学机制:结果:在 Con A 诱导的体内肝毒性模型中,口服 GZFLW 可减轻 AIH。基于串联质谱的分析确定了 GZFLW 中的 15 种次生代谢物。GZFLW 能显著缓解 Con A 诱导的 AIH 综合征,包括肝细胞凋亡、炎症、活性氧积累、功能衰竭和死亡。从机理上讲,GZFLW抑制了Caspase依赖性细胞凋亡,恢复了抗氧化系统,并减少了Con A处理小鼠肝脏中促炎细胞因子的产生。此外,GZFLW还能抑制Con A诱导的小鼠肝脏炎症细胞浸润、脾脏T细胞活化和脾肿大:我们的研究结果证明了 GZFLW 在治疗 AIH 方面的应用潜力。结论:我们的研究结果表明了 GZFLW 在治疗 AIH 方面的应用潜力,这也促使我们进一步研究 GZFLW 作为 AIH 及其他肝病治疗方法的可能性。
{"title":"Guizhi Fuling Wan ameliorates concanavalin A-induced autoimmune hepatitis in mice.","authors":"Shun-Li Kuo, Chun-Han Su, Kuei-Hung Lai, Yu-Chia Chang, Jyh-Sheng You, Hsin-Hsin Peng, Chun-Hong Chen, Chi-Chen Lin, Po-Jen Chen, Tsong-Long Hwan","doi":"10.1016/j.bj.2024.100731","DOIUrl":"https://doi.org/10.1016/j.bj.2024.100731","url":null,"abstract":"<p><strong>Background: </strong>Autoimmune hepatitis (AIH) is an immune-mediated hepatic disease associated with intense complications. AIH is more common in females and needs effective drugs to treat. Guizhi Fuling Wan (GZFLW) is a traditional Chinese herbal formula used to treat various gynecologic diseases. In this study, we aim to extend the new use of GZFLW for AIH.</p><p><strong>Methods: </strong>The tandem MS-based analysis was used to identify secondary metabolites in GZFLW. Therapeutic effects of GZFLW were tested in a concanavalin A (Con A)-induced AIH model in mice. Ethnopharmacological mechanisms underlying the antiapoptotic, antioxidant, and immunomodulatory protective effects were determined.</p><p><strong>Results: </strong>Oral administration of GZFLW attenuates AIH in a Con A-induced hepatotoxic model in vivo. The tandem MS-based analysis identified 15 secondary metabolites in GZFLW. The Con A-induced AIH syndromes, including hepatic apoptosis, inflammation, reactive oxygen species accumulation, function failure, and mortality, were significantly alleviated by GZFLW in mice. Mechanistically, GZFLW restrained the caspase-dependent apoptosis, restored the antioxidant system, and decreased pro-inflammatory cytokine production in the livers of Con A-treated mice. Besides, GZFLW repressed the Con A-induced hepatic infiltration of inflammatory cells, splenic T cell activation, and splenomegaly in mice.</p><p><strong>Conclusions: </strong>Our findings demonstrate the applicable potential of GZFLW in treating AIH. It prompts further investigation of GZFLW as a treatment option for AIH and possibly other hepatic diseases.</p>","PeriodicalId":8934,"journal":{"name":"Biomedical Journal","volume":" ","pages":"100731"},"PeriodicalIF":5.5,"publicationDate":"2024-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140855876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
m6A landscape is more pervasive when Trypanosoma brucei exits the cell cycle. 当布氏锥虫退出细胞周期时,m6A 的分布更为普遍。
IF 5.5 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-17 DOI: 10.1016/j.bj.2024.100728
Lúcia Serra, Sara Silva Pereira, Idálio J Viegas, Henrique Machado, Lara López-Escobar, Luisa M Figueiredo

N6-methyladenosine (m6A) is a mRNA modification with important roles in gene expression. In African trypanosomes, this post-transcriptional modification is detected in hundreds of transcripts and it affects the stability of the variant surface glycoprotein (VSG) transcript in the proliferating blood stream form. However, how the m6A landscape varies across the life cycle remains poorly defined. Using full-length, non-fragmented RNA, we immunoprecipitated and sequenced m6A-modified transcripts across three life cycle stages of Trypanosoma brucei - slender (proliferative), stumpy (quiescent), and procyclic forms (proliferative). We found that 1037 transcripts are methylated in at least one of these three life cycle stages. While 21% of methylated transcripts are common in the three stages of the life cycle, globally each stage has a distinct methylome. Interestingly, 47% of methylated transcripts are detected in the quiescent stumpy form only, suggesting a critical role for m6A when parasites exit the cell cycle and prepare for transmission by the Tsetse fly. In this stage, we found that a significant proportion of methylated transcripts encodes for proteins involved in RNA metabolism, which is consistent with their reduced transcription and translation. Moreover, we found that not all major surface proteins are regulated by m6A, as procyclins are not methylated, and that, within the VSG repertoire, not all VSG transcripts are demethylated upon parasite differentiation to procyclic form. This study reveals that the m6A regulatory landscape is specific to each life cycle stage, becoming more pervasive as T. brucei exits the cell cycle.

N6-甲基腺苷(m6A)是一种在基因表达中起重要作用的 mRNA 修饰。在非洲锥虫中,这种转录后修饰可在数百个转录本中检测到,而且会影响增殖血流形态中变异表面糖蛋白(VSG)转录本的稳定性。然而,m6A 在整个生命周期中的变化情况仍不十分明确。我们使用全长、非碎裂的 RNA,对布氏锥虫三个生命周期阶段--纤细型(增殖型)、粗壮型(静止型)和原环状型(增殖型)--的 m6A 修饰转录本进行了免疫沉淀和测序。我们发现,有 1037 个转录本在这三个生命周期阶段中至少有一个阶段被甲基化。虽然 21% 的甲基化转录本在生命周期的三个阶段中很常见,但总体而言,每个阶段都有一个独特的甲基化组。有趣的是,47%的甲基化转录本仅在静止期的残体中被检测到,这表明当寄生虫退出细胞周期并准备被采采蝇传播时,m6A 起着关键作用。在这一阶段,我们发现相当一部分甲基化转录本编码参与 RNA 代谢的蛋白质,这与它们的转录和翻译减少是一致的。此外,我们还发现并非所有主要的表面蛋白都受 m6A 的调控,因为原环蛋白并没有被甲基化,而且在 VSG 基因库中,并非所有的 VSG 转录本都会在寄生虫分化为原环形态时被去甲基化。这项研究揭示了 m6A 的调控格局是每个生命周期阶段所特有的,随着布氏原虫退出细胞周期而变得更加普遍。
{"title":"m<sup>6</sup>A landscape is more pervasive when Trypanosoma brucei exits the cell cycle.","authors":"Lúcia Serra, Sara Silva Pereira, Idálio J Viegas, Henrique Machado, Lara López-Escobar, Luisa M Figueiredo","doi":"10.1016/j.bj.2024.100728","DOIUrl":"https://doi.org/10.1016/j.bj.2024.100728","url":null,"abstract":"<p><p>N6-methyladenosine (m<sup>6</sup>A) is a mRNA modification with important roles in gene expression. In African trypanosomes, this post-transcriptional modification is detected in hundreds of transcripts and it affects the stability of the variant surface glycoprotein (VSG) transcript in the proliferating blood stream form. However, how the m<sup>6</sup>A landscape varies across the life cycle remains poorly defined. Using full-length, non-fragmented RNA, we immunoprecipitated and sequenced m<sup>6</sup>A-modified transcripts across three life cycle stages of Trypanosoma brucei - slender (proliferative), stumpy (quiescent), and procyclic forms (proliferative). We found that 1037 transcripts are methylated in at least one of these three life cycle stages. While 21% of methylated transcripts are common in the three stages of the life cycle, globally each stage has a distinct methylome. Interestingly, 47% of methylated transcripts are detected in the quiescent stumpy form only, suggesting a critical role for m<sup>6</sup>A when parasites exit the cell cycle and prepare for transmission by the Tsetse fly. In this stage, we found that a significant proportion of methylated transcripts encodes for proteins involved in RNA metabolism, which is consistent with their reduced transcription and translation. Moreover, we found that not all major surface proteins are regulated by m<sup>6</sup>A, as procyclins are not methylated, and that, within the VSG repertoire, not all VSG transcripts are demethylated upon parasite differentiation to procyclic form. This study reveals that the m<sup>6</sup>A regulatory landscape is specific to each life cycle stage, becoming more pervasive as T. brucei exits the cell cycle.</p>","PeriodicalId":8934,"journal":{"name":"Biomedical Journal","volume":" ","pages":"100728"},"PeriodicalIF":5.5,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140847975","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In vivo SPECT imaging of Tc-99m radiolabeled exosomes from human umbilical-cord derived mesenchymal stem cells in small animals 人脐带间充质干细胞Tc-99 m放射性标记外泌体在小动物体内的SPECT成像。
IF 4.1 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-16 DOI: 10.1016/j.bj.2024.100721

Extracellular vesicles derived from human umbilical cord-derived mesenchymal stem cells (UCMSC-EVs) have been postulated to have therapeutic potential for various diseases. However, the biodistribution and pharmacokinetics of these vesicles are still unclear. For a better understanding of the in vivo properties of UCMSC-EVs, in the present study, these vesicles were first radiolabeled with Technetium-99m (99mTc-UCMSC-EVs) and evaluated using in vivo single photon emission computed tomography (SPECT) imaging and biodistribution experiments. SPECT images demonstrated that the liver and spleen tissues mainly took up the 99mTc-UCMSC-EVs. The biodistribution study observed slight uptake in the thyroid and stomach, indicating that 99mTc-UCMSC-EVs was stable at 24 h in vivo. The pharmacokinetic analyses of the blood half-life demonstrated the quick distribution phase (0.85 ± 0.28 min) and elimination phase (25.22 ± 20.76 min) in mice. This study provides a convenient and efficient method for 99mTc-UCMSC-EVs preparation without disturbing their properties. In conclusion, the biodistribution, quick elimination, and suitable stability in vivo of 99mTc-UCMSC-EVs were quantified by the noninvasive imaging and pharmacokinetic analyses, which provides useful information for indication selection, dosage protocol design, and toxicity assessment in future applications.

从人脐带间充质干细胞(UCMSC-EVs)中提取的细胞外囊泡被认为具有治疗各种疾病的潜力。然而,这些囊泡的生物分布和药代动力学尚不清楚。为了更好地了解 UCMSC-EVs 的体内特性,本研究首先用锝-99m(99mTc-UCMSC-EVs)对这些囊泡进行了放射性标记,并使用体内单光子发射计算机断层扫描(SPECT)成像和生物分布实验对其进行了评估。SPECT 图像显示,肝脏和脾脏组织主要吸收了 99m锝-UCMSC-EVs。生物分布研究观察到甲状腺和胃有轻微摄取,表明 99mTc-UCMSC-EVs 在体内 24 小时内是稳定的。血液半衰期的药代动力学分析表明,99mTc-UCMSC-EVs 在小鼠体内的分布期(0.85 ± 0.28 分钟)和消除期(25.22 ± 20.76 分钟)均较快。该研究为制备 99mTc-UCMSC-EVs 提供了一种方便、高效且不会干扰其特性的方法。总之,该研究通过无创成像和药代动力学分析,量化了 99mTc-UCMSC-EVs 在体内的生物分布、快速消除和适宜的稳定性,为未来应用中的适应症选择、剂量方案设计和毒性评估提供了有用信息。
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引用次数: 0
Genome-wide association study identifies DRAM1 associated with Tourette syndrome in Taiwan 全基因组关联研究发现 DRAM1 与台湾的妥瑞症有关。
IF 4.1 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-10 DOI: 10.1016/j.bj.2024.100725

Background

Tourette syndrome (TS) is a neurodevelopmental disorder characterized by motor and vocal tics. Several susceptibility loci associated with TS have been identified previously in populations of European descent using genome-wide association studies (GWAS). However, the exact pathogenic mechanism underlying TS is unknown; additionally, the results of previous GWAS for TS were based on Western populations, which may not translate to other populations. Therefore, we conducted a GWAS in Taiwanese patients with TS and chronic tic disorders (CTDs), with an aim to elucidate the genetic basis and potential risk factors for TS in this population.

Methods

GWAS was performed on a Taiwanese TS/CTDs cohort with a sample size of 1007 patients with TS and 25,522 ancestry-matched controls. Additionally, polygenic risk score was calculated and assessed.

Results

Genome-wide significant locus, rs12313062 (p = 1.43 × 10−8) and other 9 single nucleotide polymorphisms, were identified in chromosomes 12q23.2, associated with DRAM1 and was a novel susceptibility locus identified in TS/CTDs group. DRAM1, a lysosomal transmembrane protein regulated by p53, modulates autophagy and apoptosis, with potential implications for neuropsychiatric conditions associated with autophagy disruption.

Conclusions

This study conducted the first GWAS for TS in a Taiwanese population, identifying a significant locus on chromosome 12q23.2 associated with DRAM1. These findings provide novel insights into the neurobiology of TS and potential directions for future research in this area.
背景:图雷特综合征(TS)是一种以运动和发声抽搐为特征的神经发育障碍。此前,通过全基因组关联研究(GWAS),在欧洲后裔人群中发现了几个与 TS 相关的易感基因位点。然而,TS 的确切致病机制尚不清楚;此外,以前针对 TS 的全基因组关联研究的结果是基于西方人群的,可能并不适用于其他人群。因此,我们在台湾的 TS 和慢性抽搐症(CTDs)患者中开展了一项 GWAS 研究,旨在阐明该人群中 TS 的遗传基础和潜在风险因素:对台湾 TS/CTDs 群体进行了 GWAS 分析,样本量为 1,007 名 TS 患者和 25,522 名祖先匹配对照。此外,还计算并评估了多基因风险评分:结果:在染色体12q23.2上发现了与DRAM1相关的全基因组重要位点rs12313062(p=1.43×10-8)和其他9个单核苷酸多态性,这是TS/CTDs群体中发现的一个新的易感位点。DRAM1是一种受p53调控的溶酶体跨膜蛋白,可调节自噬和细胞凋亡,对与自噬破坏相关的神经精神疾病具有潜在影响:本研究首次在台湾人群中开展了TS的GWAS,在染色体12q23.2上发现了一个与DRAM1相关的重要位点。这些发现为TS的神经生物学提供了新的见解,也为这一领域未来的研究提供了潜在的方向。
{"title":"Genome-wide association study identifies DRAM1 associated with Tourette syndrome in Taiwan","authors":"","doi":"10.1016/j.bj.2024.100725","DOIUrl":"10.1016/j.bj.2024.100725","url":null,"abstract":"<div><h3>Background</h3><div>Tourette syndrome (TS) is a neurodevelopmental disorder characterized by motor and vocal tics. Several susceptibility loci associated with TS have been identified previously in populations of European descent using genome-wide association studies (GWAS). However, the exact pathogenic mechanism underlying TS is unknown; additionally, the results of previous GWAS for TS were based on Western populations, which may not translate to other populations. Therefore, we conducted a GWAS in Taiwanese patients with TS and chronic tic disorders (CTDs), with an aim to elucidate the genetic basis and potential risk factors for TS in this population.</div></div><div><h3>Methods</h3><div>GWAS was performed on a Taiwanese TS/CTDs cohort with a sample size of 1007 patients with TS and 25,522 ancestry-matched controls. Additionally, polygenic risk score was calculated and assessed.</div></div><div><h3>Results</h3><div>Genome-wide significant locus, rs12313062 (<em>p</em> = 1.43 × 10<sup>−8</sup>) and other 9 single nucleotide polymorphisms, were identified in chromosomes 12q23.2, associated with <em>DRAM1</em> and was a novel susceptibility locus identified in TS/CTDs group. DRAM1, a lysosomal transmembrane protein regulated by p53, modulates autophagy and apoptosis, with potential implications for neuropsychiatric conditions associated with autophagy disruption.</div></div><div><h3>Conclusions</h3><div>This study conducted the first GWAS for TS in a Taiwanese population, identifying a significant locus on chromosome 12q23.2 associated with <em>DRAM1</em>. These findings provide novel insights into the neurobiology of TS and potential directions for future research in this area.</div></div>","PeriodicalId":8934,"journal":{"name":"Biomedical Journal","volume":"47 6","pages":"Article 100725"},"PeriodicalIF":4.1,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140847472","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Blood oxygenation state in COVID-19 patients: Unexplored role of 2,3-bisphosphoglycerate COVID-19 患者的血液氧合状态:尚未探索的 2,3-二磷酸甘油酯的作用
IF 4.1 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-06 DOI: 10.1016/j.bj.2024.100723

Background

COVID-19 reduces lung functionality causing a decrease of blood oxygen levels (hypoxemia) often related to a decreased cellular oxygenation (hypoxia). Besides lung injury, other factors are implicated in the regulation of oxygen availability such as pH, partial arterial carbon dioxide tension (PaCO2), temperature, and erythrocytic 2,3-bisphosphoglycerate (2,3-BPG) levels, all factors affecting hemoglobin saturation curve. However, few data are currently available regarding the 2,3-BPG modulation in SARS-CoV-2 affected patients at the hospital admission.

Material and methods

Sixty-eight COVID-19 patients were enrolled at hospital admission. The lung involvement was quantified using chest-Computer Tomography (CT) analysed with automatic software (CALIPER). Haemoglobin concentrations, glycemia, and routine analysis were evaluated in the whole blood, while partial arterial oxygen tension (PaO2), PaCO2, pH, and HCO3 were assessed by arterial blood gas analysis. 2,3-BPG levels were assessed by specific immunoenzymatic assays in RBCs.

Results

A higher percentage of interstitial lung disease (ILD) and vascular pulmonary-related structure (VRS) volume on chest-CT quantified with CALIPER had been found in COVID-19 patients with a worse disease outcome (R = 0.4342; and R = 0.3641, respectively). Furthermore, patients with lower PaO2 showed an imbalanced acid-base equilibrium (pH, p = 0.0208; PaCO2, p = 0.0496) and a higher 2,3-BPG levels (p = 0.0221). The 2,3-BPG levels were also lower in patients with metabolic alkalosis (p = 0.0012 vs. no alkalosis; and p = 0.0383 vs. respiratory alkalosis).

Conclusions

Overall, the data reveal a different pattern of activation of blood oxygenation compensatory mechanisms reflecting a different course of the COVID-19 disease specifically focusing on 2,3-BPG modulation.
背景COVID-19 会降低肺功能,导致血氧水平下降(低氧血症),这通常与细胞氧合下降(缺氧)有关。除肺损伤外,其他因素也与氧气供应的调节有关,如 pH 值、部分动脉二氧化碳张力(PaCO2)、温度和红细胞 2,3-二磷酸甘油酯(2,3-BPG)水平,这些因素都会影响血红蛋白饱和度曲线。然而,目前有关 SARS-CoV-2 患者入院时 2,3-BPG 调节的数据很少。使用胸部计算机断层扫描(CT)和自动软件(CALIPER)对肺部受累情况进行量化分析。对全血中的血红蛋白浓度、血糖和常规分析进行了评估,同时通过动脉血气分析评估了部分动脉血氧张力(PaO2)、PaCO2、pH 值和 HCO3-。结果发现,在 COVID-19 患者中,用 CALIPER 定量的胸部 CT 上间质性肺病(ILD)和血管性肺相关结构(VRS)体积比例较高,疾病预后较差(分别为 R = 0.4342 和 R = 0.3641)。此外,PaO2 较低的患者酸碱平衡失衡(pH,p = 0.0208;PaCO2,p = 0.0496),2,3-BPG 水平较高(p = 0.0221)。总体而言,这些数据揭示了血液氧合代偿机制的不同激活模式,反映了 COVID-19 疾病的不同病程,特别是在 2,3-BPG 调节方面。
{"title":"Blood oxygenation state in COVID-19 patients: Unexplored role of 2,3-bisphosphoglycerate","authors":"","doi":"10.1016/j.bj.2024.100723","DOIUrl":"10.1016/j.bj.2024.100723","url":null,"abstract":"<div><h3>Background</h3><div>COVID-19 reduces lung functionality causing a decrease of blood oxygen levels (hypoxemia) often related to a decreased cellular oxygenation (hypoxia). Besides lung injury, other factors are implicated in the regulation of oxygen availability such as pH, partial arterial carbon dioxide tension (PaCO<sub>2</sub>), temperature, and erythrocytic 2,3-bisphosphoglycerate (2,3-BPG) levels, all factors affecting hemoglobin saturation curve. However, few data are currently available regarding the 2,3-BPG modulation in SARS-CoV-2 affected patients at the hospital admission.</div></div><div><h3>Material and methods</h3><div>Sixty-eight COVID-19 patients were enrolled at hospital admission. The lung involvement was quantified using chest-Computer Tomography (CT) analysed with automatic software (CALIPER). Haemoglobin concentrations, glycemia, and routine analysis were evaluated in the whole blood, while partial arterial oxygen tension (PaO<sub>2</sub>), PaCO<sub>2</sub>, pH, and HCO<sub>3</sub><sup>−</sup> were assessed by arterial blood gas analysis. 2,3-BPG levels were assessed by specific immunoenzymatic assays in RBCs.</div></div><div><h3>Results</h3><div>A higher percentage of interstitial lung disease (ILD) and vascular pulmonary-related structure (VRS) volume on chest-CT quantified with CALIPER had been found in COVID-19 patients with a worse disease outcome (R = 0.4342; and R = 0.3641, respectively). Furthermore, patients with lower PaO<sub>2</sub> showed an imbalanced acid-base equilibrium (pH, <em>p</em> = 0.0208; PaCO<sub>2</sub>, <em>p</em> = 0.0496) and a higher 2,3-BPG levels (<em>p</em> = 0.0221). The 2,3-BPG levels were also lower in patients with metabolic alkalosis (<em>p</em> = 0.0012 vs. no alkalosis; and <em>p</em> = 0.0383 vs. respiratory alkalosis).</div></div><div><h3>Conclusions</h3><div>Overall, the data reveal a different pattern of activation of blood oxygenation compensatory mechanisms reflecting a different course of the COVID-19 disease specifically focusing on 2,3-BPG modulation.</div></div>","PeriodicalId":8934,"journal":{"name":"Biomedical Journal","volume":"47 6","pages":"Article 100723"},"PeriodicalIF":4.1,"publicationDate":"2024-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140765485","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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