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Employing Raman Spectroscopy and Machine Learning for the Identification of Breast Cancer 利用拉曼光谱和机器学习识别乳腺癌
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-12 DOI: 10.1186/s12575-024-00255-0
Ya Zhang, Zheng Li, Zhongqiang Li, Huaizhi Wang, Dinkar Regmi, Jian Zhang, Jiming Feng, Shaomian Yao, Jian Xu
Breast cancer poses a significant health risk to women worldwide, with approximately 30% being diagnosed annually in the United States. The identification of cancerous mammary tissues from non-cancerous ones during surgery is crucial for the complete removal of tumors. Our study innovatively utilized machine learning techniques (Random Forest (RF), Support Vector Machine (SVM), and Convolutional Neural Network (CNN)) alongside Raman spectroscopy to streamline and hasten the differentiation of normal and late-stage cancerous mammary tissues in mice. The classification accuracy rates achieved by these models were 94.47% for RF, 96.76% for SVM, and 97.58% for CNN, respectively. To our best knowledge, this study was the first effort in comparing the effectiveness of these three machine-learning techniques in classifying breast cancer tissues based on their Raman spectra. Moreover, we innovatively identified specific spectral peaks that contribute to the molecular characteristics of the murine cancerous and non-cancerous tissues. Consequently, our integrated approach of machine learning and Raman spectroscopy presents a non-invasive, swift diagnostic tool for breast cancer, offering promising applications in intraoperative settings.
乳腺癌对全世界妇女的健康构成重大威胁,在美国,每年约有 30% 的妇女被确诊患上乳腺癌。在手术过程中识别癌变乳腺组织和非癌变乳腺组织对于彻底切除肿瘤至关重要。我们的研究创新性地利用机器学习技术(随机森林 (RF)、支持向量机 (SVM) 和卷积神经网络 (CNN))与拉曼光谱技术相结合,简化并加快了小鼠正常乳腺组织与晚期癌症乳腺组织的区分。这些模型的分类准确率分别为:RF 94.47%、SVM 96.76% 和 CNN 97.58%。据我们所知,这项研究是首次比较这三种机器学习技术根据拉曼光谱对乳腺癌组织进行分类的有效性。此外,我们还创新性地发现了有助于确定小鼠癌组织和非癌组织分子特征的特定光谱峰。因此,我们将机器学习和拉曼光谱技术相结合的方法为乳腺癌提供了一种无创、快速的诊断工具,在术中应用前景广阔。
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引用次数: 0
Effects and Mechanisms of the Xianhecao-Huanglian Drug Pair on Autophagy-Mediated Intervention in Acute Inflammatory Bowel Disease via the JAK2/STAT3 Pathway. 仙鹤草-黄连药对通过 JAK2/STAT3 通路自噬介导的急性炎症性肠病干预的作用和机制
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-26 DOI: 10.1186/s12575-024-00242-5
Yaping He, Xinling Shen, Haiyan Peng
<p><p>To explore the effects and mechanisms of the Xianhecao-Huanglian drug pair on autophagy-mediated intervention in acute inflammatory bowel disease (IBD) via the JAK2/STAT3 pathway. The study examined the underlying mechanisms of action of Xianhecao (APL) and Huanglian (CR) using a mouse model of dextran sodium sulfate (DSS)-induced acute inflammatory bowel disease (IBD) and in an in vitro model of IBD induced by lipopolysaccharide (LPS). The assessment of the therapeutic efficacy of the Xianhecao-Huanglian drug combination in a mouse model of IBD caused by DSS included the following parameters: Assessment of weight loss or gain. Measurement of the disease activity index (DAI). Assessment of histological damage. Determination of organ index. Measurement of colon length. Ascertain the levels of inflammatory cytokines in the intestinal tissues and serum of mice. Immunohistochemistry (IHC) for the measurement of tight junction protein concentrations in the colon mucosa, including ZO-1, claudin-1, and occludin. Measurement of mucin levels, specifically Mucin 2 (Muc2). Hematoxylin and eosin (HE) staining for the observation of histopathological alterations in colonic tissues. Examining the effect on goblet cells using periodic acid-Schiff (PAS) labeling. Application of Western blot and immunofluorescence techniques for the detection of autophagy-related markers in colonic tissues and proteins associated with the JAK2/STAT3 pathway. A cell inflammation model of IBD was induced through LPS stimulation, and a serum containing the Xianhecao-Huanglian drug pair (referred to as ACHP-DS) was formulated. Cell viability, anti-proinflammatory cytokines, tight junction proteins, mucins, autophagy-related markers, and the JAK2/STAT3 signaling pathway were assessed. The Xianhecao-Huanglian drug pair significantly ameliorated the symptoms and survival quality of acute IBD mice, reducing the disease activity index score, raising MUC2 secretion and tight junction protein expression to improve the integrity of the intestinal barrier, and preserving goblet cell function; thus, protecting the intestines. It effectively restrained triggering the signaling pathway that involves JAK2 and STAT3, leading to the suppression of inflammation and amelioration of colonic inflammation damage. Additionally, it induced autophagy in mouse colonic tissues.The in vitro experiments demonstrated that the Xianhecao-Huanglian drug combination enhanced the viability of LOVO and NCM460 cells when exposed to LPS stimulation. Furthermore, it suppressed the production of inflammatory cytokines such as IL-6, IL-1β, as well as TNF-α, whilst increasing the production of IL-10, ZO-1, along with MUC2. These effects collectively led to the alleviation of inflammation and the restoration of mucosal integrity. The results were consistent with what was shown in the in vivo trial. Moreover, the medication demonstrated effectiveness in reducing JAK2 along with STAT3 phosphorylation levels in the LPS-i
目的探索仙鹤草-黄连药物对通过JAK2/STAT3途径自噬介导的急性炎症性肠病(IBD)干预的作用和机制。该研究利用右旋糖酐硫酸钠(DSS)诱导的急性炎症性肠病(IBD)小鼠模型和脂多糖(LPS)诱导的 IBD 体外模型,考察了仙鹤草(APL)和黄连(CR)的基本作用机制。仙鹤草-黄连药物组合在 DSS 诱导的 IBD 小鼠模型中的疗效评估包括以下参数:体重减轻或增加的评估。测量疾病活动指数(DAI)。组织学损伤评估确定器官指数测量结肠长度。确定小鼠肠道组织和血清中炎症细胞因子的水平。免疫组织化学(IHC)测定结肠粘膜中紧密连接蛋白的浓度,包括 ZO-1、claudin-1 和 occludin。测量粘蛋白水平,特别是粘蛋白 2 (Muc2)。采用苏木精和伊红(HE)染色法观察结肠组织的病理变化。使用周期性酸-Schiff(PAS)标记检查对腺泡细胞的影响。应用 Western 印迹和免疫荧光技术检测结肠组织中的自噬相关标记物以及与 JAK2/STAT3 通路相关的蛋白质。通过 LPS 刺激诱导 IBD 细胞炎症模型,并配制含有仙鹤草-黄连药对(简称 ACHP-DS)的血清。对细胞活力、抗炎细胞因子、紧密连接蛋白、粘蛋白、自噬相关标志物和 JAK2/STAT3 信号通路进行了评估。仙鹤草-黄连药物组合能明显改善急性IBD小鼠的症状和生存质量,降低疾病活动指数评分,提高MUC2分泌和紧密连接蛋白表达,改善肠道屏障的完整性,保护鹅口疮细胞功能,从而保护肠道。它能有效抑制 JAK2 和 STAT3 信号通路的触发,从而抑制炎症,改善结肠炎症损伤。体外实验表明,仙鹤草-黄连复方制剂能提高 LOVO 和 NCM460 细胞在 LPS 刺激下的存活率。此外,它还抑制了炎性细胞因子(如 IL-6、IL-1β 和 TNF-α)的产生,同时增加了 IL-10、ZO-1 和 MUC2 的产生。这些作用共同缓解了炎症,恢复了粘膜的完整性。这些结果与体内试验的结果一致。此外,在 LPS 诱导的 IBD 细胞炎症模型中,仙鹤草还能有效降低 JAK2 和 STAT3 磷酸化水平。使用含仙鹤草-黄连药物组合的血清或 JAK2/STAT3 通路抑制剂 AG490 进行干预,可逆转 LPS 刺激细胞的促炎效应并提高自噬水平。仙鹤草-黄莲联合用药可调节JAK2/STAT3通路,从而诱导自噬,可用于干预IBD。
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引用次数: 0
Short-term Outcome of RPVBT Combined with Chemotherapy for Patients with Single, < 3 cm, T2 Stage Bladder cancer. 单发、小于 3 厘米、T2 期膀胱癌患者 RPVBT 联合化疗的短期疗效。
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-20 DOI: 10.1186/s12575-024-00253-2
Zhihua Zhang, Yashen Wang, Fei Luo, Jian Li

Background: To investigate the survival outcome of "radical" GreenLight photoselective vaporization of bladder tumor (RPVBT) in conjunction with postoperative chemotherapy for patients with single, < 3 cm in diameter, T2 stage muscle invasive bladder cancer (MIBC).

Methods: Thirty-eight patients with single, < 3 cm, T2 stage bladder cancer were treated with RPVBT combined with chemotherapy and were included in the RPVBT group. To compare the differences in survival outcome, 80 patients with Ta/T1 bladder cancer and 30 patients with T2 bladder cancer were included as controls. The 80 patients with Ta/T1 bladder cancer underwent GreenLight photoselective vaporization of bladder tumors(PVBT), while 30 patients with T2 bladder cancer underwent radical cystectomy (RC) combined with pelvic lymph node dissection (PLND). Tumor recurrence and death were recorded, and recurrence-free survival (RFS) and overall survival (OS) curves were plotted to compare the survival difference between the RPVBT and control groups.

Results: No significant differences were observed in comorbidities or living habits between the RPVBT and control groups. Blood loss [RPVBT: 20 (IQR10, 20) vs. RC: 100 (IQR90, 150) mL] and postoperative hospital stay [RPVBT: 5.5 (IQR5, 6), vs. RC: 10 (IQR8, 12) days] in the RPVBT group were significantly lower than that in the RC group. Urinary tract infection [RPVBT: 6 (15.8%) vs. PVBT: 14 (17.5%)] and bladder irritation sign [RPVBT: 11 (28.9%) vs. PVBT: 23 (28.8%) ] were the most common short-term complications in the RPVBT group, with no statistical difference between the RPVBT and PVBT group. The median follow-up time for survival endpoints was 22 (16, 27) months for the included patients after surgery. The outcomes of tumor recurrence at 12, 24, and 36 months were 2 (5.3%), 3 (7.9%), and 5 (13.2%) patients in the RPVBT groups, 13 (16.3%) and 3 (10%) patients experienced recurrence in the PVBT and RC groups at 36 months. No significant differences were noted among the three groups (P = 0.778). Additionally, Kaplan-Meier survival analysis revealed no statistically significant differences in RFS (P = 0.791) and OS (P = 0.689) among the three groups.

Conclusions: Our findings indicate that RPVBT combined with chemotherapy is a simple and feasible treatment option with fewer complications and satisfactory survival outcomes in patients with single, < 3 cm, T2 stage bladder cancer.

背景:研究 "根治性 "绿光光选择性汽化膀胱肿瘤(RPVBT)联合术后化疗对单发膀胱肿瘤患者的生存效果:目的:研究 "根治性 "绿光膀胱肿瘤光选择性汽化术(RPVBT)与术后化疗对单发膀胱肿瘤患者的生存效果:38例单发膀胱肿瘤患者:RPVBT组和对照组在合并症和生活习惯方面无明显差异。RPVBT组的失血量[RPVBT:20(IQR10,20)对RC:100(IQR90,150)毫升]和术后住院时间[RPVBT:5.5(IQR5,6)对RC:10(IQR8,12)天]明显低于RC组。尿路感染[RPVBT:6 (15.8%) vs. PVBT:14 (17.5%)]和膀胱刺激征[RPVBT:11 (28.9%) vs. PVBT:23 (28.8%)]是RPVBT组最常见的短期并发症,RPVBT组与PVBT组之间无统计学差异。所纳入患者术后生存终点的中位随访时间为22(16,27)个月。在12、24和36个月时,RPVBT组分别有2(5.3%)、3(7.9%)和5(13.2%)名患者出现肿瘤复发,PVBT组和RC组分别有13(16.3%)和3(10%)名患者在36个月时出现肿瘤复发。三组之间无明显差异(P = 0.778)。此外,Kaplan-Meier生存分析显示,三组患者的RFS(P = 0.791)和OS(P = 0.689)差异无统计学意义:我们的研究结果表明,RPVBT 联合化疗是一种简单可行的治疗方案,并发症较少,对单发患者的生存结果令人满意、
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引用次数: 0
Photodynamic Therapy: A Novel Approach for Head and Neck Cancer Treatment with Focusing on Oral Cavity. 光动力疗法:以口腔为重点的头颈癌治疗新方法。
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-17 DOI: 10.1186/s12575-024-00252-3
Kimia Sadat Kazemi, Parisa Kazemi, Hassan Mivehchi, Kamyar Nasiri, Seyed Saman Eshagh Hoseini, Seyedeh Tabasom Nejati, Parnian Pour Bahrami, Shayan Golestani, Mohsen Nabi Afjadi

Oral cancers, specifically oral squamous cell carcinoma (OSCC), pose a significant global health challenge, with high incidence and mortality rates. Conventional treatments such as surgery, radiotherapy, and chemotherapy have limited effectiveness and can result in adverse reactions. However, as an alternative, photodynamic therapy (PDT) has emerged as a promising option for treating oral cancers. PDT involves using photosensitizing agents in conjunction with specific light to target and destroy cancer cells selectively. The photosensitizers accumulate in the cancer cells and generate reactive oxygen species (ROS) upon exposure to the activating light, leading to cellular damage and ultimately cell death. PDT offers several advantages, including its non-invasive nature, absence of known long-term side effects when administered correctly, and cost-effectiveness. It can be employed as a primary treatment for early-stage oral cancers or in combination with other therapies for more advanced cases. Nonetheless, it is important to note that PDT is most effective for superficial or localized cancers and may not be suitable for larger or deeply infiltrating tumors. Light sensitivity and temporary side effects may occur but can be managed with appropriate care. Ongoing research endeavors aim to expand the applications of PDT and develop novel photosensitizers to further enhance its efficacy in oral cancer treatment. This review aims to evaluate the effectiveness of PDT in treating oral cancers by analyzing a combination of preclinical and clinical studies.

口腔癌,特别是口腔鳞状细胞癌(OSCC)的发病率和死亡率都很高,对全球健康构成了重大挑战。手术、放疗和化疗等传统治疗方法效果有限,并可能导致不良反应。然而,作为一种替代疗法,光动力疗法(PDT)已成为治疗口腔癌的一种有前途的选择。光动力疗法是将光敏剂与特定光线结合使用,选择性地靶向和破坏癌细胞。光敏剂在癌细胞中积聚,并在接触激活光后产生活性氧(ROS),导致细胞损伤,最终导致细胞死亡。光动力疗法具有多种优势,包括非侵入性、在正确使用的情况下没有已知的长期副作用以及成本效益。它可作为早期口腔癌的主要治疗方法,也可与其他疗法结合用于晚期病例。不过,需要注意的是,PDT 对浅表或局部癌症最有效,可能不适合较大或深度浸润的肿瘤。可能会出现光敏感和暂时性副作用,但可以通过适当的护理加以控制。正在进行的研究旨在扩大光化学疗法的应用范围,并开发新型光敏剂,以进一步提高其在口腔癌治疗中的疗效。本综述旨在通过综合分析临床前和临床研究,评估光动力疗法治疗口腔癌的效果。
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引用次数: 0
USP53 Affects the Proliferation and Apoptosis of Breast Cancer Cells by Regulating the Ubiquitination Level of ZMYND11. USP53 通过调节 ZMYND11 的泛素化水平影响乳腺癌细胞的增殖和凋亡
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-23 DOI: 10.1186/s12575-024-00251-4
Xiangchao Meng, Hongye Chen, Zhihui Tan, Weitao Yan, Yinfeng Liu, Ji Lv, Meng Han

Breast cancer is the most common female malignancy worldwide. Ubiquitin-specific peptidase 53 (USP53) has been shown to exert cancer-suppressing functions in several solid tumors, but its role and the underlying mechanism in breast cancer has not been clearly elucidated. Therefore, we have carried out a series of detailed studies on this matter at the levels of bioinformatics, clinical tissue, cell function and animal model. We found that USP53 expression was downregulated in breast cancer specimens and was negatively correlated with the clinical stages. Gain- and loss-of-function experiments demonstrated USP53 inhibited proliferation, clonogenesis, cell cycle and xenograft growth, as well as induced apoptosis and mitochondrial damage of breast cancer cells. Co-immunoprecipitation data suggested that USP53 interacted with zinc finger MYND-type containing 11 (ZMYND11), and catalyzed its deubiquitination and stabilization. The 33-50 amino acid Cys-box domain was key for USP53 enzyme activity, but not essential for its binding with ZMYND11. The rescue experiments revealed that the anti-tumor role of USP53 in breast cancer cells was at least partially mediated by ZMYND11. Both USP53 and ZMYND11 were prognostic protective factors for breast cancer. USP53-ZMYND11 axis may be a good potential biomarker or therapeutic target for breast cancer, which can provide novel insights into the diagnosis, treatment and prognosis.

乳腺癌是全球最常见的女性恶性肿瘤。已证实泛素特异性肽酶 53(USP53)在多种实体瘤中发挥抑癌功能,但其在乳腺癌中的作用及其内在机制尚未明确阐明。因此,我们从生物信息学、临床组织、细胞功能和动物模型等层面对此进行了一系列详细研究。我们发现 USP53 在乳腺癌标本中表达下调,并与临床分期呈负相关。功能增益和功能缺失实验表明,USP53 可抑制乳腺癌细胞的增殖、克隆生成、细胞周期和异种移植生长,并诱导细胞凋亡和线粒体损伤。共免疫沉淀数据表明,USP53 与含锌手指 MYND 型 11(ZMYND11)相互作用,并催化其去泛素化和稳定化。33-50 氨基酸的 Cys-box 结构域是 USP53 酶活性的关键,但不是其与 ZMYND11 结合的必要条件。拯救实验表明,USP53 在乳腺癌细胞中的抗肿瘤作用至少部分是由 ZMYND11 介导的。USP53 和 ZMYND11 都是乳腺癌的预后保护因子。USP53-ZMYND11轴可能是乳腺癌的潜在生物标志物或治疗靶点,可为诊断、治疗和预后提供新的见解。
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引用次数: 0
High-sensitivity whole-mount in situ Hybridization of Mouse Oocytes and Embryos Visualizes the Super-resolution Structures and Distributions of mRNA Molecules 小鼠卵母细胞和胚胎的高灵敏度全装原位杂交可视化 mRNA 分子的超分辨率结构和分布
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-10 DOI: 10.1186/s12575-024-00250-5
Takahiro Sanada, Tomoya Kotani
Mammalian oocytes accumulate more than ten thousand mRNAs, of which three to four thousand mRNAs are translationally repressed. The timings and sites of translational activation of these dormant mRNAs are crucial for promoting oocyte maturation and embryonic development. How these mRNAs are accumulated and distributed in oocytes is therefore a fundamental issue to be explored. A method that enables visualization of mRNA molecules with high resolution in a simple manner would be valuable for understanding how oocytes accumulate and regulate the dormant mRNAs. We have developed a highly sensitive whole-mount in situ hybridization method using in vitro-synthesized RNA probes and the tyramide signal amplification (TSA) system optimized for mouse oocytes and embryos. By using this method, Pou5f1/Oct4, Emi2, and cyclin B1 mRNAs were detected in immature oocytes and 2-cell stage embryos. Confocal microscopy showed that these mRNAs formed granular structures in the oocyte cytoplasm. The structures of Pou5f1/Oct4 and cyclin B1 mRNAs persisted in 2-cell stage embryos. Pou5f1/Oct4 RNA granules exhibited a solid-like property in immature oocytes and became liquid-like droplets in 2-cell stage embryos. Double-staining of cyclin B1 mRNA with Emi2 or Pou5f1/Oct4 mRNA revealed that these mRNAs were distributed as different RNA granules without overlapping each other and that the size of cyclin B1 RNA granules tended to be larger than that of Emi2 RNA granules. The structures and distribution patterns of these mRNAs were further analyzed by N-SIM super-resolution microscopy. This analysis revealed that the large-sized RNA granules consist of many small-sized granules, suggesting the accumulation and regulation of dormant mRNAs as basal-sized RNA granules. The method established in this study can easily visualize the structure and distribution of mRNAs accumulated in mammalian oocytes and embryos with high sensitivity and super-resolution. This method is useful for investigating the cellular and molecular mechanisms of translational control of mRNAs by which maturation and early developmental processes are promoted.
哺乳动物卵母细胞积累了一万多个 mRNA,其中三四千个 mRNA 受到翻译抑制。这些休眠 mRNA 的翻译激活时间和地点对促进卵母细胞成熟和胚胎发育至关重要。因此,这些 mRNA 如何在卵母细胞中积累和分布是一个需要探索的基本问题。一种能以简单的方式实现高分辨率 mRNA 分子可视化的方法对了解卵母细胞如何积累和调控休眠 mRNA 非常有价值。我们利用体外合成的 RNA 探针和专为小鼠卵母细胞和胚胎优化的酪胺信号放大(TSA)系统,开发了一种高灵敏度的整装原位杂交方法。通过这种方法,在未成熟卵母细胞和2细胞期胚胎中检测到了Pou5f1/Oct4、Emi2和细胞周期蛋白B1 mRNA。共聚焦显微镜显示,这些 mRNA 在卵母细胞胞质中形成颗粒状结构。Pou5f1/Oct4 和细胞周期蛋白 B1 mRNA 的结构在 2 细胞期胚胎中持续存在。Pou5f1/Oct4 RNA颗粒在未成熟卵母细胞中呈固态,而在2细胞期胚胎中则变成液滴状。细胞周期蛋白 B1 mRNA 与 Emi2 或 Pou5f1/Oct4 mRNA 的双重染色显示,这些 mRNA 分布为不同的 RNA 颗粒,互不重叠,而且细胞周期蛋白 B1 RNA 颗粒的大小往往大于 Emi2 RNA 颗粒。N-SIM 超分辨率显微镜进一步分析了这些 mRNA 的结构和分布模式。该分析表明,大尺寸的 RNA 颗粒由许多小尺寸的颗粒组成,这表明休眠 mRNA 是以基底尺寸的 RNA 颗粒的形式积累和调控的。本研究建立的方法能以高灵敏度和超分辨率轻松观察哺乳动物卵母细胞和胚胎中积累的 mRNA 的结构和分布。这种方法有助于研究促进成熟和早期发育过程的 mRNA 翻译控制的细胞和分子机制。
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引用次数: 0
Molecular Characterization of Lineage-IV Peste Des Petits Ruminants Virus and the Development of In-House Indirect Enzyme-Linked Immunosorbent Assay (IELISA) for its Rapid Detection". 线粒体-IV 小反刍兽疫病毒的分子特征和用于快速检测的室内间接酶联免疫吸附试验 (IELISA) 的开发"。
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-05 DOI: 10.1186/s12575-024-00249-y
Tahira Kamal, Saeed-Ul-Hassan Khan, Fariha Hassan, Amir-Bin- Zahoor, Amman Ullah, S Murtaza Hassan Andrabi, Ghulam Muhammad Ali, Tayyaba Afsar, Fohad Mabood Husain, Huma Shafique, Suhail Razak

Peste des petits ruminants (PPRV), a highly contagious viral disease, causes significant economic losses concerning sheep and goats. Recently, PPR viruses (PPRVs), have adopted new hosts and lineage IV of PPRVs represents genetic diversity within the same lineage. 350 samples, including blood, swabs, and tissues from sheep/goats, were collected during the 2020-2021 disease outbreaks in Pakistan. These samples were analysed through RT-PCR and three isolates of PPRV with accession numbers, MW600920, MW600921, and MW600922, were submitted to GenBank, based on the partial N-gene sequencing. This analysis provides a better understanding of genetic characterizations and a targeted RT-PCR approach for rapid PPRV diagnosis. An IELISA test was developed using the semi-purified antigen MW600922 isolate grown in Vero cells. The PPRV isolates currently present high divergence with the Turkish strain; conversely, similarities equivalent to 99.73% were observed for isolates collected from Pakistan. The developed indirect ELISA (IELISA) test demonstrated antibody detection rates at dilutions of 1:200 for antibodies (serum) and 1:32 for antigens. In comparison to cELISA, high specificity (85.23%) and sensitivity (90.60%) rates were observed. In contrast to the virus neutralization test (VNT), IELISA was observed to be 100% specific and 82.14% sensitive in its results. Based on these results, serological surveys conducted for PPR antibodies using IELISA can be a more effective strategy on a larger scale. Furthermore, our results demonstrate a significant breakthrough in the research in terms of cost-effectiveness and storage efficiency, and the developed IELISA test is highly recommended for use in developing countries.

小反刍兽疫(PPRV)是一种传染性极强的病毒性疾病,给绵羊和山羊造成了巨大的经济损失。最近,PPR 病毒(PPRVs)采用了新的宿主,PPRVs 的第四系代表了同一系中的遗传多样性。2020-2021 年疾病爆发期间,我们在巴基斯坦收集了 350 份样本,包括绵羊/山羊的血液、拭子和组织。通过 RT-PCR 对这些样本进行了分析,并根据部分 N 基因测序结果向 GenBank 提交了三个 PPRV 分离物,其登录号分别为 MW600920、MW600921 和 MW600922。这项分析有助于更好地了解遗传特征,并为快速诊断 PPRV 提供有针对性的 RT-PCR 方法。利用在 Vero 细胞中培养的半纯化抗原 MW600922 分离物开发了一种 IELISA 检测方法。目前,PPRV 病毒分离物与土耳其毒株的差异很大;相反,从巴基斯坦采集的分离物的相似度相当于 99.73%。开发的间接酶联免疫吸附试验(IELISA)显示,抗体(血清)稀释度为 1:200 时,抗原稀释度为 1:32 时,抗体检测率为 1:200。与 cELISA 相比,特异性(85.23%)和灵敏度(90.60%)都很高。与病毒中和试验(VNT)相比,IELISA 的特异性为 100%,灵敏度为 82.14%。基于这些结果,在更大范围内,使用 IELISA 进行 PPR 抗体血清学调查是一种更有效的策略。此外,我们的研究结果表明,在成本效益和储存效率方面取得了重大突破,我们强烈建议发展中国家使用所开发的 IELISA 检测方法。
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引用次数: 0
EAF2 Downregulation Recruits Tumor-associated Macrophages in Prostate Cancer through Upregulation of MIF. 下调 EAF2 可通过上调 MIF 吸引前列腺癌中的肿瘤相关巨噬细胞
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-05 DOI: 10.1186/s12575-024-00247-0
Tianyu Cao, Qian Sun, Xiaoqin Shi, Xiuke Lin, Qingyuan Lin, Jinchao Zhu, Junhao Xu, Di Cui, Youwei Shi, Yifeng Jing, Wenhuan Guo

Background: The role of tumor inflammatory microenvironment in the advancement of cancer, particularly prostate cancer, is widely acknowledged. ELL-associated factor 2 (EAF2), a tumor suppressor that has been identified in the prostate, is often downregulated in prostate cancer. Earlier investigations have shown that mice with EAF2 gene knockout exhibited a substantial infiltration of inflammatory cells into the prostatic stroma.

Methods: A cohort comprising 38 patients who had been diagnosed with prostate cancer and subsequently undergone radical prostatectomy (RP) was selected. These patients were pathologically graded according to the Gleason scoring system and divided into two groups. The purpose of this selection was to investigate the potential correlation between EAF2 and CD163 using immunohistochemistry (IHC) staining. Additionally, in vitro experimentation was conducted to verify the relationship between EAF2 expression, macrophage migration and polarization.

Results: Our study demonstrated that in specimens of human prostate cancer, the expression of EAF2 was notably downregulated, and this decrease was inversely associated with the number of CD163-positive macrophages that infiltrated the cancerous tissue. Cell co-culture experiments revealed that the chemotactic effect of tumor cells towards macrophages was intensified and that macrophages differentiated into tumor-associated macrophages (TAMs) when EAF2 was knocked out. Additionally, the application of cytokine protein microarray showed that the expression of chemokine macrophage migration inhibitory factor (MIF) increased after EAF2 knockout.

Conclusions: Our findings suggested that EAF2 was involved in the infiltration of CD163-positive macrophages in prostate cancer via MIF.

背景:肿瘤炎症微环境在癌症(尤其是前列腺癌)进展过程中的作用已得到广泛认可。ELL相关因子2(EAF2)是一种在前列腺中发现的肿瘤抑制因子,在前列腺癌中经常被下调。早前的研究表明,EAF2基因敲除的小鼠表现出炎症细胞大量渗入前列腺基质:方法:选取了 38 名确诊为前列腺癌并随后接受了根治性前列腺切除术(RP)的患者。这些患者根据格里森评分系统进行病理分级,并分为两组。选择这些患者的目的是利用免疫组化(IHC)染色法研究 EAF2 和 CD163 之间的潜在相关性。此外,我们还进行了体外实验,以验证 EAF2 表达、巨噬细胞迁移和极化之间的关系:结果:我们的研究表明,在人类前列腺癌标本中,EAF2的表达明显下调,这种下调与浸润癌组织的CD163阳性巨噬细胞的数量成反比。细胞共培养实验显示,EAF2 被敲除后,肿瘤细胞对巨噬细胞的趋化作用增强,巨噬细胞分化为肿瘤相关巨噬细胞(TAMs)。此外,细胞因子蛋白芯片的应用表明,EAF2敲除后趋化因子巨噬细胞迁移抑制因子(MIF)的表达增加:我们的研究结果表明,EAF2通过MIF参与了CD163阳性巨噬细胞在前列腺癌中的浸润。
{"title":"EAF2 Downregulation Recruits Tumor-associated Macrophages in Prostate Cancer through Upregulation of MIF.","authors":"Tianyu Cao, Qian Sun, Xiaoqin Shi, Xiuke Lin, Qingyuan Lin, Jinchao Zhu, Junhao Xu, Di Cui, Youwei Shi, Yifeng Jing, Wenhuan Guo","doi":"10.1186/s12575-024-00247-0","DOIUrl":"10.1186/s12575-024-00247-0","url":null,"abstract":"<p><strong>Background: </strong>The role of tumor inflammatory microenvironment in the advancement of cancer, particularly prostate cancer, is widely acknowledged. ELL-associated factor 2 (EAF2), a tumor suppressor that has been identified in the prostate, is often downregulated in prostate cancer. Earlier investigations have shown that mice with EAF2 gene knockout exhibited a substantial infiltration of inflammatory cells into the prostatic stroma.</p><p><strong>Methods: </strong>A cohort comprising 38 patients who had been diagnosed with prostate cancer and subsequently undergone radical prostatectomy (RP) was selected. These patients were pathologically graded according to the Gleason scoring system and divided into two groups. The purpose of this selection was to investigate the potential correlation between EAF2 and CD163 using immunohistochemistry (IHC) staining. Additionally, in vitro experimentation was conducted to verify the relationship between EAF2 expression, macrophage migration and polarization.</p><p><strong>Results: </strong>Our study demonstrated that in specimens of human prostate cancer, the expression of EAF2 was notably downregulated, and this decrease was inversely associated with the number of CD163-positive macrophages that infiltrated the cancerous tissue. Cell co-culture experiments revealed that the chemotactic effect of tumor cells towards macrophages was intensified and that macrophages differentiated into tumor-associated macrophages (TAMs) when EAF2 was knocked out. Additionally, the application of cytokine protein microarray showed that the expression of chemokine macrophage migration inhibitory factor (MIF) increased after EAF2 knockout.</p><p><strong>Conclusions: </strong>Our findings suggested that EAF2 was involved in the infiltration of CD163-positive macrophages in prostate cancer via MIF.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"26 1","pages":"21"},"PeriodicalIF":3.7,"publicationDate":"2024-07-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11225222/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141537464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Recent Advances in Crimean-Congo Hemorrhagic Fever Virus Detection, Treatment, and Vaccination: Overview of Current Status and Challenges. 克里米亚-刚果出血热病毒检测、治疗和疫苗接种的最新进展:现状与挑战概述》。
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-26 DOI: 10.1186/s12575-024-00244-3
Khursheed Muzammil, Saba Rayyani, Ahmed Abbas Sahib, Omid Gholizadeh, Hayder Naji Sameer, Tareq Jwad Kazem, Haneen Badran Mohammed, Hesam Ghafouri Kalajahi, Rahadian Zainul, Saman Yasamineh

Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne virus, and zoonosis, and affects large regions of Asia, Southwestern and Southeastern Europe, and Africa. CCHFV can produce symptoms, including no specific clinical symptoms, mild to severe clinical symptoms, or deadly infections. Virus isolation attempts, antigen-capture enzyme-linked immunosorbent assay (ELISA), and reverse transcription polymerase chain reaction (RT-PCR) are all possible diagnostic tests for CCHFV. Furthermore, an efficient, quick, and cheap technology, including biosensors, must be designed and developed to detect CCHFV. The goal of this article is to offer an overview of modern laboratory tests available as well as other innovative detection methods such as biosensors for CCHFV, as well as the benefits and limits of the assays. Furthermore, confirmed cases of CCHF are managed with symptomatic assistance and general supportive care. This study examined the various treatment modalities, as well as their respective limitations and developments, including immunotherapy and antivirals. Recent biotechnology advancements and the availability of suitable animal models have accelerated the development of CCHF vaccines by a substantial margin. We examined a range of potential vaccines for CCHF in this research, comprising nucleic acid, viral particles, inactivated, and multi-epitope vaccines, as well as the present obstacles and developments in this field. Thus, the purpose of this review is to present a comprehensive summary of the endeavors dedicated to advancing various diagnostic, therapeutic, and preventive strategies for CCHF infection in anticipation of forthcoming hazards.

克里米亚-刚果出血热病毒(CCHFV)是一种蜱媒病毒,也是一种人畜共患病,影响亚洲、欧洲西南部和东南部以及非洲的大片地区。CCHFV 可产生症状,包括无特异性临床症状、轻度至重度临床症状或致命感染。病毒分离尝试、抗原捕获酶联免疫吸附试验(ELISA)和反转录聚合酶链反应(RT-PCR)都是可能的 CCHFV 诊断试验。此外,还必须设计和开发一种高效、快速、廉价的技术(包括生物传感器)来检测 CCHFV。本文旨在概述可用于 CCHFV 的现代实验室检测方法和其他创新检测方法(如生物传感器),以及这些检测方法的优点和局限性。此外,对确诊的 CCHF 病例可采取对症治疗和一般支持性护理。本研究探讨了各种治疗方法及其各自的局限性和发展,包括免疫疗法和抗病毒药物。近期生物技术的进步和合适动物模型的出现大大加快了慢性阻塞性肺疾病疫苗的开发。在这项研究中,我们考察了一系列潜在的 CCHF 疫苗,包括核酸疫苗、病毒颗粒疫苗、灭活疫苗和多表位疫苗,以及该领域目前存在的障碍和发展情况。因此,本综述的目的是全面总结致力于推进针对 CCHF 感染的各种诊断、治疗和预防策略的努力,以应对即将到来的危害。
{"title":"Recent Advances in Crimean-Congo Hemorrhagic Fever Virus Detection, Treatment, and Vaccination: Overview of Current Status and Challenges.","authors":"Khursheed Muzammil, Saba Rayyani, Ahmed Abbas Sahib, Omid Gholizadeh, Hayder Naji Sameer, Tareq Jwad Kazem, Haneen Badran Mohammed, Hesam Ghafouri Kalajahi, Rahadian Zainul, Saman Yasamineh","doi":"10.1186/s12575-024-00244-3","DOIUrl":"10.1186/s12575-024-00244-3","url":null,"abstract":"<p><p>Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne virus, and zoonosis, and affects large regions of Asia, Southwestern and Southeastern Europe, and Africa. CCHFV can produce symptoms, including no specific clinical symptoms, mild to severe clinical symptoms, or deadly infections. Virus isolation attempts, antigen-capture enzyme-linked immunosorbent assay (ELISA), and reverse transcription polymerase chain reaction (RT-PCR) are all possible diagnostic tests for CCHFV. Furthermore, an efficient, quick, and cheap technology, including biosensors, must be designed and developed to detect CCHFV. The goal of this article is to offer an overview of modern laboratory tests available as well as other innovative detection methods such as biosensors for CCHFV, as well as the benefits and limits of the assays. Furthermore, confirmed cases of CCHF are managed with symptomatic assistance and general supportive care. This study examined the various treatment modalities, as well as their respective limitations and developments, including immunotherapy and antivirals. Recent biotechnology advancements and the availability of suitable animal models have accelerated the development of CCHF vaccines by a substantial margin. We examined a range of potential vaccines for CCHF in this research, comprising nucleic acid, viral particles, inactivated, and multi-epitope vaccines, as well as the present obstacles and developments in this field. Thus, the purpose of this review is to present a comprehensive summary of the endeavors dedicated to advancing various diagnostic, therapeutic, and preventive strategies for CCHF infection in anticipation of forthcoming hazards.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"26 1","pages":"20"},"PeriodicalIF":3.7,"publicationDate":"2024-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11201903/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141455133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Impact of Blood and Urine Biomarkers on Age-Related Macular Degeneration: Insights from Mendelian Randomization and Cross-sectional Study from NHANES. 血液和尿液生物标志物对年龄相关性黄斑变性的影响:孟德尔随机化和 NHANES 横截面研究的启示。
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-25 DOI: 10.1186/s12575-024-00248-z
Wang Jingzhi, Xuehao Cui

Introduction: Age-related macular degeneration (AMD) is a leading cause of blindness, affecting millions worldwide. Its complex pathogenesis involves a variety of risk factors, including lipid metabolism and inflammation. This study aims to elucidate the causal relationships between biomarkers related to these processes and AMD, leveraging Mendelian randomization (MR) and cross-sectional analysis from the National Health and Nutrition Examination Survey (NHANES).

Method: We conducted a two-phase study, initially using MR to explore the causality between 35 biomarkers and various AMD subtypes, followed by observational analysis with NHANES data to validate these findings.

Results: MR analysis identified a protective role of TG and a risk factor role of HDL-C and CRP in AMD development. NHANES data corroborated these findings, highlighting a nuanced relationship between these biomarkers and AMD. Notably, lipid metabolism-related biomarkers showed stronger associations with early AMD, whereas CRP's significance was pronounced in late AMD.

Conclusion: This comprehensive analysis, combining MR with NHANES data, reinforces the importance of lipid metabolism and inflammation in AMD's etiology. Future research should further investigate these biomarkers' mechanisms and their potential as therapeutic targets for AMD prevention and treatment.

导言:老年性黄斑变性(AMD)是导致失明的主要原因,影响着全球数百万人。其复杂的发病机制涉及多种风险因素,包括脂质代谢和炎症。本研究旨在利用孟德尔随机法(MR)和美国国家健康与营养调查(NHANES)的横断面分析,阐明与这些过程相关的生物标志物与老年性黄斑变性之间的因果关系:我们分两个阶段进行了研究,首先利用孟德尔随机分析法探讨了 35 种生物标志物与各种 AMD 亚型之间的因果关系,然后利用 NHANES 数据进行了观察分析,以验证这些发现:结果:磁共振分析确定了总胆固醇的保护作用以及高密度脂蛋白胆固醇和 CRP 的风险因素作用。NHANES 数据证实了这些发现,并强调了这些生物标志物与 AMD 之间的微妙关系。值得注意的是,脂质代谢相关生物标志物与早期AMD的关联性更强,而CRP在晚期AMD中的意义则更为明显:结论:这项综合分析结合了 MR 和 NHANES 数据,加强了脂质代谢和炎症在 AMD 病因中的重要性。未来的研究应进一步探讨这些生物标志物的作用机制及其作为预防和治疗 AMD 的治疗靶点的潜力。
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引用次数: 0
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