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Screening and identification of abiotic stress-responsive efficient antifungal Pseudomonas spp. from rice rhizospheric soil. 水稻根际土壤非生物胁迫响应高效抗真菌假单胞菌的筛选与鉴定。
Q3 Agricultural and Biological Sciences Pub Date : 2021-01-01 DOI: 10.5114/bta.2021.103758
Arun Karnwal

Plant growth-promoting rhizobacteria (PGPR) are a collection of microorganisms often used to support and promote plant development and combat plant infectious diseases with various biological control methods. The most significant restricting factors for agricultural productivity worldwide are abiotic constraints. In the present study, seven bacterial isolates from the rice rhizosphere were selected for detailed tests based on results obtained in experiments determining the ACC deaminase synthesis and drought tolerance at -0.30 MPa PEG level. Screening results of the stress tolerance analysis of the seven isolates for elevated temperature (50°C), alkalinity (10% NaCl), and drought (-1.2 MPa) showed that abiotic stress resistance was less prevalent in DRO2, DRO13, and DRO43 isolates than in DRO17, DRO28, DRO35, and DRO51 isolates. During the study, it was observed that DRO17, DRO28, and DRO51 tended to maintain similar cell density at -0.73 MPa PEG level, as observed at -0.30 MPa stress condition. No bacterial growth was observed at higher PEG level (-1.12 MPa) for any bacterial isolate. Four strains of Pseudomonas (DRO17, DRO28, DRO35, and DRO51) exhibited salinity and temperature tolerance. Antifungal screening using the bangle method showed that DRO35 was highly antagonistic towards Rhizoctonia solani 4633, followed by Fusarium moniliforme 4223, with an inhibition of 64.3% and 48%, respectively. The DRO28 isolate exhibited 72.5% growth inhibition for Fusarium moniliforme 4223, while the DRO51 isolate showed 38.2% growth inhibition for Bipolaris hawaiiensis 2445. DRO17 reduced the growth of Rhizoctonia solani 4633, and Curvularia lunata 350 by 36% and 31%, respectively. In conclusion, the screening of bacterial strains with promising stress tolerance and antifungal characteristics could support farmers to achieve the required positive outcomes in the agriculture field.

植物促生根瘤菌(Plant growth-promoting rhizobacteria, PGPR)是一类常用生物防治方法支持和促进植物发育和对抗植物传染病的微生物。世界范围内农业生产力最重要的制约因素是非生物的制约因素。在-0.30 MPa PEG水平下,选取7株水稻根际分离菌进行了ACC脱氨酶合成和耐旱性试验。7株菌株在高温(50℃)、碱性(10% NaCl)和干旱(-1.2 MPa)条件下的耐受性分析结果显示,菌株DRO2、DRO13和DRO43的非生物抗逆性低于菌株DRO17、DRO28、DRO35和DRO51。在研究过程中,我们观察到,在-0.73 MPa PEG水平下,DRO17、DRO28和DRO51的细胞密度趋于保持与-0.30 MPa应激条件下相似。在较高PEG水平(-1.12 MPa)下,未观察到细菌生长。4株假单胞菌(DRO17、DRO28、DRO35和DRO51)均表现出耐盐性和耐温性。用手镯法进行抗真菌筛选,结果表明,DRO35对茄枯丝核菌4633具有较强的拮抗作用,其次是念珠镰刀菌4223,抑制率分别为64.3%和48%。菌株DRO28对念珠镰刀菌4223的生长抑制率为72.5%,菌株DRO51对夏威夷双北极星2445的生长抑制率为38.2%。DRO17对茄枯丝核菌4633和弯孢菌350的生长抑制作用分别为36%和31%。综上所述,筛选具有抗逆性和抗真菌特性的菌株可以帮助农民在农业领域取得所需的积极成果。
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引用次数: 3
Nanoantibodies: small molecules, big possibilities. 纳米抗体:小分子,大可能性。
Q3 Agricultural and Biological Sciences Pub Date : 2021-01-01 DOI: 10.5114/bta.2021.108724
Adriana Pedreáñez, Jesús Mosquera-Sulbarán, Nelson Muñóz, Diego Tene, Jorge Robalino

Camelids (camels, dromedaries, alpacas, llamas, and vicuñas) contain in their serum conventional heterodimeric antibodies as well as antibodies with no light chains (L) in their structure and composed of only heavy chains (H), called as HcAbs (heavy chain antibodies). Variable fragments derived from these antibodies, called as VHH or nanoantibodies (Nbs), have also been described. Since their discovery, Nbs have been widely used in the fields of research, diagnostics, and pharmacotherapy. Despite being approximately one-tenth the size of a conventional antibody, they retain similar specificity and affinity to conventional antibodies and are much easier to clone and manipulate. Their unique properties such as small size, high stability, strong antigen binding affinity, water solubility, and natural origin make them suitable for the development of biopharmaceuticals and nanoreagents. The present review aims to describe the main structural and biochemical characteristics of these antibodies and to provide an update on their applications in research, biotechnology, and medicine. For this purpose, an exhaustive search of the biomedical literature was performed in the following databases: Medline (PubMed), Google Scholar, and ScienceDirect. Meta-analyses, observational studies, review articles, and clinical guidelines were reviewed. Only original articles were considered to assess the quality of the evidence.

骆驼类(骆驼、单峰骆驼、羊驼、大羊驼和vicuñas)的血清中含有常规的异二聚体抗体,以及结构中没有轻链(L)而仅由重链(H)组成的抗体,称为hcab(重链抗体)。来自这些抗体的可变片段,称为VHH或纳米抗体(Nbs),也被描述过。自发现以来,Nbs已广泛应用于研究、诊断和药物治疗领域。尽管它们的大小大约是传统抗体的十分之一,但它们保留了与传统抗体相似的特异性和亲和力,并且更容易克隆和操作。它们具有体积小、稳定性高、抗原结合亲和力强、水溶性强、来源天然等特点,适合用于生物制药和纳米试剂的开发。本文综述了这些抗体的主要结构和生化特性,并介绍了它们在研究、生物技术和医学方面的最新应用。为此,在以下数据库中对生物医学文献进行了详尽的搜索:Medline (PubMed)、Google Scholar和ScienceDirect。我们回顾了meta分析、观察性研究、综述文章和临床指南。仅考虑原始文章来评估证据的质量。
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引用次数: 0
Effect of TAT-signaling fusion system along with co-expression of GroEL/ES chaperones on secretory expression of somatropin tat信号融合系统与GroEL/ES伴侣蛋白共表达对生长激素分泌表达的影响
Q3 Agricultural and Biological Sciences Pub Date : 2020-01-01 DOI: 10.5114/BTA.2020.96411
M. Rabbani, R. Ghasemi, M. R. Bagherinejad, A. Jahanian
Human growth hormone (somatropin) is one of the most widely used recombinant proteins that stimulates growth, cell reproduction, and cell regulation in humans. Synthetic production of this protein normally results in low yields and inclusion body formation. To overcome these difficulties, the production of somatropin along with two common signal peptides, namely TorA and SufI, in co-expression with a cytosolic chaperone, GroEL/ES, was evaluated in the present study. The target protein and the two signal sequences (TorA and SufI) were synthesized and cloned into an expression plasmid (pET-22) by using Nde l and Xho l endonucleases. The expression vector (pGro7) containing chaperone proteins (GroES/EL) and one of the expression vectors containing the signal sequence (and the target protein) were co-expressed in the BL21 DE3 expression host. The results showed that although some of the expressed proteins exit the cytoplasm and enter the periplasmic space, there is also an accumulation of proteins (probably as inclusion body) inside the cytoplasmic area. Western blot analysis showed that the inclusion of a signal sequence in the cassette containing the target protein could help to secrete the protein in the periplasmic space and culture media when compared with control groups. The result of these experiments show that the TAT secretion system promotes transportation of the target protein out of the cytoplasm. This secretory system completes folding of the protein structure and transfers the mature protein to the periplasmic space.
人生长激素(somatropin)是一种应用最广泛的重组蛋白,用于刺激人体生长、细胞繁殖和细胞调节。这种蛋白质的合成生产通常导致低产量和包涵体的形成。为了克服这些困难,本研究评估了生长激素的产生以及两种常见的信号肽,即TorA和SufI,与细胞质伴侣GroEL/ES共表达。利用Nde 1和Xho 1内切酶合成目标蛋白和两个信号序列TorA和SufI,并将其克隆到表达质粒pET-22中。将含有伴侣蛋白(GroES/EL)的表达载体(pGro7)与含有信号序列的表达载体之一(及靶蛋白)在BL21 DE3表达宿主中共表达。结果表明,虽然部分表达蛋白离开细胞质进入质周间隙,但在细胞质区域内仍有蛋白聚集(可能为包涵体)。Western blot分析显示,与对照组相比,在含有目标蛋白的盒中包含一个信号序列可以帮助蛋白在质周空间和培养基中分泌。这些实验结果表明,TAT分泌系统促进靶蛋白的运输出细胞质。这个分泌系统完成蛋白质结构的折叠,并将成熟的蛋白质转移到质周空间。
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引用次数: 0
Cultural characteristics and cordycepin production of some Cordyceps militaris strains under artificial cultivation conditions 人工栽培条件下几种蛹虫草菌种的培养特性及虫草素产量
Q3 Agricultural and Biological Sciences Pub Date : 2020-01-01 DOI: 10.5114/BTA.2020.96414
L. Nguyen, V. Le, B. T. Nguyen, N. X. Ngo, H. D. T. Nguyen, Q. D. Nguyen, S. Mulla
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引用次数: 3
Effect of salt stress-tolerant bacterial endophytes from Bougainvillea glabra on the growth of Triticum aestivum L. var. HD 2687 and Zea mays var. PSCL-4642 三角梅耐盐胁迫内生细菌对小麦HD 2687和玉米PSCL-4642生长的影响
Q3 Agricultural and Biological Sciences Pub Date : 2020-01-01 DOI: 10.5114/BTA.2020.96410
A. Karnwal
Wheat and corn crops contribute to the food security of humans by providing a nutrient-rich diet. However, their production in abiotic stress conditions such as salinity is limited. Endophytes exert a beneficial effect on plants through the decomposition of organic materials for smooth absorption, detoxification, and reduction of the effect of phytopathogenic microorganisms by increasing the immunity of host plants to resist phytopathogens and through nutrient deposition in plants responsible for reducing salt stress. The present study aimed to evaluate the NaCl tolerance efficiency of Triticum aestivum L. var. HD 2687 and Zea mays var. PSCL-4642 cultivars at the germination stage after inoculation with salt-tolerant bacterial endophyte BoGl21 isolated from Bougainvillea glabra. The seeds of both crops were tested for percentage of seed germination with/without bacteria at 50, 100, 150, and 200 mM NaCl concentrations. The BoGl21 isolate induced a significant increase in radicle length in corn (25.6 mm) as compared to that in wheat (10.3 mm) at 50 mM NaCl. However, at 100 mM NaCl, the radical length of wheat and corn seedlings was 5 mm and 8.8 mm, respectively. Inoculation of maize and wheat with the bacterial isolate significantly increased the plumule length of the germinated seeds as compared to that of controls. BoGl21 increased the plumule length of wheat as compared to that of the control seeds by 31.9, 11.7, and 4.8 mm at 50, 100, and 150 mM salinity stress, respectively. Inoculation of corn seeds with BoGl21 at the tested NaCl levels (50, 100, and 150 mM NaCl) increased the plumule length of the germinated seeds by 33.1, 22, 13.2, and 3.2 mm, respectively. The current research results support the hypothesis that bacterial endophytes could be beneficial to minimize the toxicity of saline stress on wheat and corn at the time of germination.
小麦和玉米作物通过提供营养丰富的饮食,对人类的粮食安全做出了贡献。然而,它们在盐度等非生物胁迫条件下的产量是有限的。内生菌通过分解有机物质使植物顺利吸收,解毒,减少植物病原微生物的作用,增加寄主植物抵抗植物病原体的免疫力,并通过在植物中沉积营养物质来减少盐胁迫,从而对植物产生有益的作用。以九重葛(Bougainvillea glabra)中分离的耐盐内生细菌BoGl21接种小麦(Triticum aestivum L. var. HD 2687)和玉米(Zea mays var. PSCL-4642),对其萌发期的耐盐性进行了评价。在50、100、150和200 mM NaCl浓度下,对两种作物的种子进行了有/无细菌萌发率的测试。在50 mm NaCl处理下,BoGl21分离物诱导玉米胚根长度(25.6 mm)显著高于小麦胚根长度(10.3 mm)。而在100 mM NaCl处理下,小麦和玉米幼苗的根长分别为5 mM和8.8 mM。与对照相比,接种玉米和小麦的萌发种子的胚珠长度显著增加。在50、100和150 mm盐胁迫下,BoGl21使小麦胚芽长度比对照分别增加了31.9、11.7和4.8 mm。在NaCl浓度为50、100和150 mM的条件下,用BoGl21接种玉米种子,发芽种子的胚轴长度分别增加了33.1、22、13.2和3.2 mM。目前的研究结果支持了细菌内生菌可能有助于减少盐胁迫对小麦和玉米萌发时的毒性的假设。
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引用次数: 3
Molecular docking and binding interaction between psychedelic drugs and human serum albumin 致幻剂与人血清白蛋白的分子对接与结合相互作用
Q3 Agricultural and Biological Sciences Pub Date : 2020-01-01 DOI: 10.5114/BTA.2020.96412
H. Khastar, Kobra Foroughi, S. Aghayan, M. Yarmohammadi, M. Jafarisani
Drug-plasma protein interaction is a critical concern in monitoring drug circulation and drug-drug interactions. The present study aimed to investigate the interaction of psychedelic drugs such as lysergic acid diethylamide (LSD), dimethyltryptamine (DMT), 2,5-dimethoxy-4-iodoamphetamine (DOI), psilocybin, psilocin, and mescaline with human serum albumin (HSA). The 3D structures of LSD, DMT, DOI, psilocybin, psilocin, mescaline, and albumin were obtained from the structural databases (www.rcsb.org, https://pubchem.ncbi.nlm.nih.gov/ compound). The structures were then prepared for molecular docking analysis by Autodock Vina software. Ultimately, the binding energies between docked HSA and psychedelic drugs were calculated, and their interactions were predicted. It was found that the psychedelic drugs can interact with HSA in the active site and the best minimum binding energies of !7.6 kcal/mol and !6.5 kcal/mol were shown by LSD and psilocybin, respectively. Our results indicated that all psychedelic drugs tested could interact with HSA at subdomains IA and IB. The structural properties of the drugs affect their interaction sites and binding energies. It was concluded that albumin, as the most abundant protein of the serum, could act as the biodistributor of psychedelic drugs.
药物-血浆蛋白相互作用是监测药物循环和药物-药物相互作用的关键问题。本研究旨在探讨麦角酸二乙胺(LSD)、二甲基色胺(DMT)、2,5-二甲氧基-4-碘安非他明(DOI)、裸盖菇素、裸盖菇素、美斯卡林等致幻剂与人血清白蛋白(HSA)的相互作用。从结构数据库(www.rcsb.org, https://pubchem.ncbi.nlm.nih.gov/ compound)中获得LSD、DMT、DOI、裸盖菇素、裸盖菇素、美斯卡林和白蛋白的三维结构。然后用Autodock Vina软件制备结构进行分子对接分析。最后,计算了对接的HSA与致幻剂之间的结合能,并预测了它们之间的相互作用。结果表明,致幻剂可在活性部位与HSA发生相互作用,LSD和裸盖菇素的最低结合能分别为!7.6 kcal/mol和!6.5 kcal/mol。结果表明,所有致幻剂均可在IA和IB亚结构域与HSA相互作用,药物的结构特性影响其相互作用位点和结合能。结论:白蛋白作为血清中含量最丰富的蛋白,可能是致幻剂的生物分配器。
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引用次数: 1
Effect of halotolerant plant growth-promoting rhizobacteria from Bougainvillea glabra on wheat and maize seedlings under NaCl stress 盐胁迫下九重葛耐盐促生根杆菌对小麦和玉米幼苗的影响
Q3 Agricultural and Biological Sciences Pub Date : 2020-01-01 DOI: 10.5114/bta.2020.100426
A. Karnwal
Wheat and maize are the main staple food crops that contribute to human food security. Their growth, however, is reduced under stresses such as salinity. The plant microbiome is associated with each plant tissue and develops a holobiont in association with the plant. Plants actively manage the configuration of their related bacterial population and its function. These microorganisms provide a broad range of benefits and advantages to the plants. The present study aimed to examine the growth improvement of wheat var. HD 2687 and maize var. PSCL-4642 under salinity at the seedling stage following inoculation of salt-tolerant plant growth-promoting rhizobacteria (PGPR) BoGl120 purified from Bougainvillea glabra. The seed germination potential with/without bacterial inoculation was examined at 50, 100, 150, and 200 mM NaCl concentrations for both crops. Compared to controls, at 50 mM NaCl concentration, the BoGl120 isolate provided the maximum radicle length in maize (32 mm) and in wheat (24.8 mm). At 100 mM NaCl concentration, however, the radicle length of wheat and maize seedlings was decreased. Inoculation of plants with the BoGl120 isolate enhanced the plumule length of seedlings at different NaCl concentrations as compared to controls. In comparison with controls, BoGl120 improved the plumule length of wheat to 32.6, 14.0, and 8 mm at 50, 100, and 150 mM NaCl concentrations, respectively. The results of the present study support the concept that PGPRs could help to increase the tolerance against saline stress in wheat and maize at the seedling stage.
小麦和玉米是促进人类粮食安全的主要粮食作物。然而,它们的生长在盐度等压力下会减少。植物微生物组与每个植物组织相关联,并与植物相关联地形成一个全息生物。植物主动管理其相关细菌种群的配置及其功能。这些微生物为植物提供了广泛的益处和优势。本研究旨在研究小麦品种HD 2687和玉米品种PSCL-4642在苗期接种九重葛(Bougainvillea glabra)中纯化的耐盐促生根细菌(PGPR) BoGl120后在盐胁迫下的生长改善情况。在50、100、150和200 mM NaCl浓度下,对两种作物接种细菌和不接种细菌的种子发芽势进行了检测。与对照相比,在50 mM NaCl浓度下,BoGl120分离物在玉米(32 mM)和小麦(24.8 mM)中具有最大的胚根长度。而在100 mM NaCl浓度下,小麦和玉米幼苗的根长减少。接种BoGl120菌株的植株在不同NaCl浓度下的子叶长度都比对照有所增加。与对照相比,BoGl120在50、100和150 mm NaCl浓度下使小麦胚粒长度分别增加到32.6、14.0和8 mm。本研究结果支持了PGPRs有助于提高小麦和玉米苗期对盐胁迫的耐受性的观点。
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引用次数: 3
Ultrasound conditioning of Streptococcus thermophilus CNRZ 447: growth, biofilm formation, exopolysaccharide production, and cell membrane permeability 嗜热链球菌cnrz447的超声调节:生长、生物膜形成、胞外多糖产生和细胞膜通透性
Q3 Agricultural and Biological Sciences Pub Date : 2020-01-01 DOI: 10.5114/BTA.2020.96416
H. Khadem, A. Tirtouil, M. Drabo, Badra Boubakeur
Sonication is one of the new and innovative approaches that is being increasingly used in food industry to control fermentation processes and to eradicate spoiling. Recently, this approach has seen new industrial applications such as enhancing microbial productivity. The present study aimed to assess the effects of ultrasound conditioning on the metabolism and extracellular matrix production of Streptococcus thermophilus. Bacterial suspensions were treated in ultrasonic bath (35 kHz, 240/60 W peak/nominal power, 1.8 l capacity) for different time periods (5, 10, 15, 20, 30, 45, and 65 min), and the growth improvement, adhesion ability, biofilm formation, and exopolysaccharide production of the bacterial strain were measured. The bacterial strain exhibited resistance to the treatment, and the conditioning improved the growth, adhesion, membrane permeability, biofilm formation, and exopolysaccharide production ability. An optimal treatment was obtained for 30 minutes of conditioning. An excellent yield of desirable exopolysaccharides (1788 mg glucose equivalent/l) was achieved. Ultrasound conditioning may be used as a potential approach to enhance certain biotechnological properties of industrial microorganisms.
超声波是一种新的和创新的方法,越来越多地用于食品工业控制发酵过程和根除腐败。最近,这种方法已经看到了新的工业应用,如提高微生物生产力。本研究旨在评估超声调理对嗜热链球菌代谢和细胞外基质产生的影响。在35 kHz、240/60 W峰值/额定功率、1.8 l容量的超声槽中处理菌悬液5、10、15、20、30、45和65 min,观察菌株的生长改善情况、粘附能力、生物膜形成和胞外多糖产量。该菌株对该处理表现出抗性,并改善了其生长、粘附、膜通透性、生物膜形成和胞外多糖生产能力。最佳的治疗是30分钟的调理。获得了理想的外多糖产量(1788 mg葡萄糖当量/l)。超声调理可以作为一种潜在的方法来提高工业微生物的某些生物技术特性。
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引用次数: 6
Screening and identification of novel cellulolytic Trichoderma species from Egyptian habitats 埃及产纤维素水解木霉的筛选与鉴定
Q3 Agricultural and Biological Sciences Pub Date : 2020-01-01 DOI: 10.5114/BTA.2020.96413
O. Hewedy, A. M. El-Zanaty, A. Fahmi
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引用次数: 3
Value addition to Pongamia biodiesel industry through bioethanol production from pressed oil cake using Bacillus cereus 利用蜡样芽孢杆菌从榨油饼中提取生物乙醇,为巴西生物柴油工业增加附加值
Q3 Agricultural and Biological Sciences Pub Date : 2020-01-01 DOI: 10.5114/BTA.2020.96415
K. Venkatesh, V. Rao
Pongamia pinnata, a tree bearing oil seeds, has been one of the prime focus among nonedible oil sources for biodiesel production in most parts of India. The oil cake obtained after the extraction of oil serves as an adequate source of cellulose, hemicellulose, proteins, lipids, and starch. The scarce literature data available suggest very low conversion rate of complex sugars to fermentable sugars and further to bioethanol. In the present work, a sulfuric acid hydrolysate obtained from Pongamia oil cake (POC) under microwave irradiation was anaerobically fermented using Bacillus cereus ATCC 14579. Under anaerobic and acidic conditions, the process parameters affecting the bioethanol production efficiency (BPE) were screened and optimized using statistical experimental designs. Of the seven parameters screened (glucose concentration, yeast extract as nitrogen source, agitation speed, pH, inoculum size, fermentation time, and temperature), only 3 were found to be significant and to increase BPE. The significant parameters were optimized using the Box-Behnken experimental design to obtain an optimal condition of 9 g/l reducing sugars, pH 4.6 maintained with acetate buffer, and fermentation period of 51 h that yielded 92% BPE with 4.2 g/l ethanol. Moreover, it was observed that the use of a buffer system to maintain broth pH, especially acetate buffer, significantly improved BPE. Low concentration of fermentation inhibitors is the key factor for improved BPE. The research outcome suggests that the production of dual fuel from Pongamia pinnata, viz. biodiesel and bioethanol, could not only improve the process economics but also reduce waste generation.
在印度大部分地区,一种油籽树,已成为生产生物柴油的主要非食用油源之一。提取油后得到的油饼是纤维素、半纤维素、蛋白质、脂质和淀粉的充足来源。现有的文献资料很少,表明复合糖转化为可发酵糖和进一步转化为生物乙醇的转化率非常低。以蜡样芽孢杆菌ATCC 14579为培养基,对微波辐照下产硫酸水解液进行厌氧发酵。在厌氧和酸性条件下,采用统计实验设计对影响生物乙醇生产效率的工艺参数进行筛选和优化。在筛选的7个参数(葡萄糖浓度、酵母浸膏作为氮源、搅拌速度、pH、接种量、发酵时间和温度)中,只有3个参数能显著提高BPE。采用Box-Behnken实验设计对重要参数进行优化,得到还原糖浓度为9 g/l,乙酸缓冲液维持pH 4.6,发酵时间为51 h,乙醇浓度为4.2 g/l, BPE产率为92%。此外,观察到使用缓冲体系来维持肉汤pH,特别是醋酸缓冲液,显著提高了BPE。低浓度的发酵抑制剂是提高BPE的关键因素。研究结果表明,以凤尾莲为原料生产生物柴油和生物乙醇双重燃料,不仅可以提高工艺经济性,而且可以减少废弃物的产生。
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引用次数: 0
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BioTechnologia
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