Pub Date : 2026-01-08eCollection Date: 2026-01-01DOI: 10.1155/bmri/3778740
Andrew J E Seely, Douglas P Barnaby, Natasha Hudek, Christophe L Herry, Nathan B Scales, Shannon M Fernando, Jamie C Brehaut, Jeffrey J Perry, Aida Fallahzadeh
Aims: Prediction of future deterioration in emergency department patients with infection is difficult, and existing prognostic tools are inaccurate. We evaluated the feasibility of deployment of a clinical decision support tool, Sepsis Advisor, which utilizes heart rate variability and laboratory values to predict future deterioration in emergency department patients with treated infection.
Methods: This study was an observational, prospective, Pilot Phase 1 feasibility implementation study involving two sites within a single academic health sciences centre. Then, 71 patients were enrolled, all with suspected/treated infection and systemic inflammatory response. Patients underwent 30 min of electrocardiograph recording. The generated predictive model and Sepsis Advisor report were shown to physicians observationally, > 48 h after clinical encounter, while assessing perceived usability, value, barriers and drivers with using the tool through interviews with nurses and physicians.
Results: Of the 71 patients enrolled, 65 (92%) had adequate duration of heart rate variability measurements to generate a predictive model (average recording: 25 ± 7 min); 100% had clinical data entry. Creatinine, lactate, and INR were drawn 97%, 56%, and 28% of the time and were incorporated into predictive models. Physician and nurse reported drivers for use included potential to facilitate communication, improve care, and ease of integration. Barriers included the need to understand and interpret results from the tool, time constraints, changing routines, and gaining buy-in. User-centered feedback informed four improved versions of the tool.
Conclusions: Observational deployment of a heart rate variability-based clinical decision support tool within the emergency department is feasible and perceived to have the potential to improve care.
{"title":"A Heart Rate Variability-Derived Decision Support Tool for Prognostication in Emergency Department Patients With Suspected Infection.","authors":"Andrew J E Seely, Douglas P Barnaby, Natasha Hudek, Christophe L Herry, Nathan B Scales, Shannon M Fernando, Jamie C Brehaut, Jeffrey J Perry, Aida Fallahzadeh","doi":"10.1155/bmri/3778740","DOIUrl":"10.1155/bmri/3778740","url":null,"abstract":"<p><strong>Aims: </strong>Prediction of future deterioration in emergency department patients with infection is difficult, and existing prognostic tools are inaccurate. We evaluated the feasibility of deployment of a clinical decision support tool, Sepsis Advisor, which utilizes heart rate variability and laboratory values to predict future deterioration in emergency department patients with treated infection.</p><p><strong>Methods: </strong>This study was an observational, prospective, Pilot Phase 1 feasibility implementation study involving two sites within a single academic health sciences centre. Then, 71 patients were enrolled, all with suspected/treated infection and systemic inflammatory response. Patients underwent 30 min of electrocardiograph recording. The generated predictive model and Sepsis Advisor report were shown to physicians observationally, > 48 h after clinical encounter, while assessing perceived usability, value, barriers and drivers with using the tool through interviews with nurses and physicians.</p><p><strong>Results: </strong>Of the 71 patients enrolled, 65 (92%) had adequate duration of heart rate variability measurements to generate a predictive model (average recording: 25 ± 7 min); 100% had clinical data entry. Creatinine, lactate, and INR were drawn 97%, 56%, and 28% of the time and were incorporated into predictive models. Physician and nurse reported drivers for use included potential to facilitate communication, improve care, and ease of integration. Barriers included the need to understand and interpret results from the tool, time constraints, changing routines, and gaining buy-in. User-centered feedback informed four improved versions of the tool.</p><p><strong>Conclusions: </strong>Observational deployment of a heart rate variability-based clinical decision support tool within the emergency department is feasible and perceived to have the potential to improve care.</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2026 ","pages":"3778740"},"PeriodicalIF":2.3,"publicationDate":"2026-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12781178/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145951328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-08eCollection Date: 2026-01-01DOI: 10.1155/bmri/3079294
Kelath Murali Manoj, Daniel Andrew Gideon, Philip Moses Samuel, Suhotra Das, Nahit Gencer
The seminal Michaelis-Menten theorization for biological catalysis was based on "transition state" (TS), involving the formation of a topologically complementary substrate (S) and enzyme (E) complex (ES) at the "active site" of the latter. Rudolph Marcus put forth the theory of outer sphere electron transfer (ET) in a "donor-acceptor" TS complex, which was seen as a foundational framework for understanding ET reactions in chemical systems. Although these two theories are quite robust, the active site treatment of Michaelis-Menten may not be relevant in promiscuous/nonspecific xenobiotic-metabolizing redox enzymes, and Marcus theory's applicability to biological ET (BET) systems can be limited in interfacial protein-protein interactions. Herein, the "mathematical" necessity to venture beyond the "active site constraints" of interpreting redox enzyme kinetics and BETs is established first with fresh data. Also, (i) the classical explanation vouching for active site binding and protein-protein complexation-based BET in xenobiotic metabolism (mediated at the endoplasmic reticulum membranes of hepatocytes) and oxidative phosphorylation (multiprotein machinery at mitochondrial cristae) is demonstrated to be untenable, and (ii) tangible/viable murburn models were proposed in lieu. Therefore, toward the imperative goal of arriving at quantitative expressions correlating the parameters/variables involved, the foundational considerations of murburn ET and murzyme catalysis in simple heme systems are presented, with some assumptions/constraints. While some derivations are from ab initio considerations, others are heuristic/empirical, often needing experimental fitting. The linear time-course profiles of ET (substrate depletion) and the biphasic substrate-dependent (product formation) are well fit with the newly derived expressions. A mechanistic comparison of the murburn model vis-à-vis the longstanding P450cam explanation for drug/xenobiotic metabolism is also provided.
{"title":"Quantitative Treatments for Explaining the Mechanism and Kinetics of Catalytic Electron Transfers in Murburn Processes, Particularly Involving Heme Enzymes Like (Per)oxidases and P450s.","authors":"Kelath Murali Manoj, Daniel Andrew Gideon, Philip Moses Samuel, Suhotra Das, Nahit Gencer","doi":"10.1155/bmri/3079294","DOIUrl":"10.1155/bmri/3079294","url":null,"abstract":"<p><p>The seminal Michaelis-Menten theorization for biological catalysis was based on \"transition state\" (TS), involving the formation of a topologically complementary substrate (S) and enzyme (E) complex (ES) at the \"active site\" of the latter. Rudolph Marcus put forth the theory of outer sphere electron transfer (ET) in a \"donor-acceptor\" TS complex, which was seen as a foundational framework for understanding ET reactions in chemical systems. Although these two theories are quite robust, the active site treatment of Michaelis-Menten may not be relevant in promiscuous/nonspecific xenobiotic-metabolizing redox enzymes, and Marcus theory's applicability to biological ET (BET) systems can be limited in interfacial protein-protein interactions. Herein, the \"mathematical\" necessity to venture beyond the \"active site constraints\" of interpreting redox enzyme kinetics and BETs is established first with fresh data. Also, (i) the classical explanation vouching for active site binding and protein-protein complexation-based BET in xenobiotic metabolism (mediated at the endoplasmic reticulum membranes of hepatocytes) and oxidative phosphorylation (multiprotein machinery at mitochondrial cristae) is demonstrated to be untenable, and (ii) tangible/viable murburn models were proposed in lieu. Therefore, toward the imperative goal of arriving at quantitative expressions correlating the parameters/variables involved, the foundational considerations of murburn ET and murzyme catalysis in simple heme systems are presented, with some assumptions/constraints. While some derivations are from ab initio considerations, others are heuristic/empirical, often needing experimental fitting. The linear time-course profiles of ET (substrate depletion) and the biphasic substrate-dependent (product formation) are well fit with the newly derived expressions. A mechanistic comparison of the murburn model vis-à-vis the longstanding P450cam explanation for drug/xenobiotic metabolism is also provided.</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2026 ","pages":"3079294"},"PeriodicalIF":2.3,"publicationDate":"2026-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12780854/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145950983","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-07eCollection Date: 2026-01-01DOI: 10.1155/bmri/9337029
Erika Calvano Küchler, Caio Luiz Bitencourt Reis, Gabriela Fonseca-Souza, Daniel Hemming, Flares Baratto-Filho, Cristiano Miranda de Araujo, Svenja Beisel-Memmert, Juliana Feltrin-Souza, Michelle Nascimento Meger, Bianca Lopes Cavalcante-Leão
Single nucleotide polymorphisms (SNPs) play a crucial role in regulating vitamin D, parathyroid hormone (PTH), and calcitonin concentrations, which are involved in bone health. Some reports suggested that fractal analysis is useful in the morphometric analysis of the mandible trabecular bone in panoramic radiographs. Therefore, we investigated if SNPs in genes that influence vitamin D, calcitonin, and PTH levels are involved in condylar bone quality during the active growing phase of the mandible. Fractal dimension was obtained from the condyle region of interest (ROI) using panoramic radiographs and used to measure the complexity and the microarchitecture of the bone. Fractal dimension using the box-counting algorithm was then calculated. In order to avoid information bias, a script to automate the commands in the software ImageJ was generated to ensure consistency and minimize the potential for human error during the data analysis process. SNPs in vitamin D receptor (VDR), cytochrome P450 family 27 subfamily B member 1 (CYP27B1), cytochrome P450 family 24 subfamily A member 1 (CYP24A1), vitamin D binding protein (VDBP), SEC23 homolog A (SEC23A), calcitonin receptor (CALCR), and parathyroid hormone (PTH) were analyzed. DNA extracted from saliva was used for genotyping analysis of VDR (rs7975232, rs2228570, and rs1544410), CYP27B1 (rs4646536), CYP24A1 (rs927650), VDBP (rs4588), SEC23A (rs8018720), CALCR (rs1801197), and PTH (rs6256, rs307247, and rs694). A statistical analysis was performed with an alpha error tolerance of 5%. A total of 100 children were included; 50 (50%) were boys and the age ranged from 5 to 14 years old. Fractal dimensions were compared among genotypes. The GT (mean = 1.20 and standard error = 0.03, p = 0.024) and TT genotypes (mean = 1.16 and standard error = 0.06, p = 0.047) in the gene VDBP (rs4588) presented lower fractal dimension. The GG genotype in SEC23A (rs8018720) (mean = 1.34 and standard error = 0.03, p = 0.011) and the TC genotype in PTH (rs694) showed an increased fractal dimension (mean = 1.29 and standard error = 0.03, p = 0.020). In conclusion, SNPs in VDBP, SEC23A, and PTH encoding genes are associated with mandibular condylar trabecular bone structure in children.
{"title":"Condylar Bone Quality in Growing Children Is Associated With Genetic Polymorphisms in Genes Involved in Calcium and Phosphate Maintenance.","authors":"Erika Calvano Küchler, Caio Luiz Bitencourt Reis, Gabriela Fonseca-Souza, Daniel Hemming, Flares Baratto-Filho, Cristiano Miranda de Araujo, Svenja Beisel-Memmert, Juliana Feltrin-Souza, Michelle Nascimento Meger, Bianca Lopes Cavalcante-Leão","doi":"10.1155/bmri/9337029","DOIUrl":"10.1155/bmri/9337029","url":null,"abstract":"<p><p>Single nucleotide polymorphisms (SNPs) play a crucial role in regulating vitamin D, parathyroid hormone (PTH), and calcitonin concentrations, which are involved in bone health. Some reports suggested that fractal analysis is useful in the morphometric analysis of the mandible trabecular bone in panoramic radiographs. Therefore, we investigated if SNPs in genes that influence vitamin D, calcitonin, and PTH levels are involved in condylar bone quality during the active growing phase of the mandible. Fractal dimension was obtained from the condyle region of interest (ROI) using panoramic radiographs and used to measure the complexity and the microarchitecture of the bone. Fractal dimension using the box-counting algorithm was then calculated. In order to avoid information bias, a script to automate the commands in the software ImageJ was generated to ensure consistency and minimize the potential for human error during the data analysis process. SNPs in vitamin D receptor (<i>VDR</i>), cytochrome P450 family 27 subfamily B member 1 (<i>CYP27B1</i>), cytochrome P450 family 24 subfamily A member 1 (<i>CYP24A1</i>), vitamin D binding protein (<i>VDBP</i>), SEC23 homolog A (<i>SEC23A</i>), calcitonin receptor (<i>CALCR</i>), and parathyroid hormone (<i>PTH</i>) were analyzed. DNA extracted from saliva was used for genotyping analysis of <i>VDR</i> (rs7975232, rs2228570, and rs1544410), <i>CYP27B1</i> (rs4646536), <i>CYP24A1</i> (rs927650), <i>VDBP</i> (rs4588), <i>SEC23A</i> (rs8018720), <i>CALCR</i> (rs1801197), and <i>PTH</i> (rs6256, rs307247, and rs694). A statistical analysis was performed with an alpha error tolerance of 5%. A total of 100 children were included; 50 (50%) were boys and the age ranged from 5 to 14 years old. Fractal dimensions were compared among genotypes. The GT (mean = 1.20 and standard error = 0.03, <i>p</i> = 0.024) and TT genotypes (mean = 1.16 and standard error = 0.06, <i>p</i> = 0.047) in the gene VDBP (rs4588) presented lower fractal dimension. The GG genotype in SEC23A (rs8018720) (mean = 1.34 and standard error = 0.03, <i>p</i> = 0.011) and the TC genotype in PTH (rs694) showed an increased fractal dimension (mean = 1.29 and standard error = 0.03, <i>p</i> = 0.020). In conclusion, SNPs in VDBP, SEC23A, and PTH encoding genes are associated with mandibular condylar trabecular bone structure in children.</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2026 ","pages":"9337029"},"PeriodicalIF":2.3,"publicationDate":"2026-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12776005/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145931580","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-05eCollection Date: 2026-01-01DOI: 10.1155/bmri/8584162
Masauko Liponda, Secilia Ng Weshemi, David Munisi
Toxoplasmosis is asymptomatic in infected individuals; however, infections acquired during pregnancy pose a significant risk of the development of congenital parasitosis, leading to poor pregnancy outcomes and various degrees of chorioretinitis later in life. This study was therefore designed to determine the seroprevalence of Toxoplasma gondii and its associated factors among pregnant women admitted for delivery in selected hospitals in Dar es Salaam. A hospital-based analytical cross-sectional study was conducted among 191 pregnant women who were admitted for delivery in the selected hospitals in Dar es Salaam, Tanzania. A pretested, Kiswahili-translated semistructured questionnaire was used to collect demographic characteristics of the respondents, as well as their risk profile and awareness on T. gondii. Collected blood samples were screened for T. gondii IgG and IgM using the FaStep TORCH IgG/IgM rapid test device as per the manufacturer's instructions. Data analysis was done using STATA Version 14 (StataCorp, Texas, United States); figures were plotted using Microsoft Excel [2024] (Microsoft Corporation, Redmond, Washington, United States). Crude and adjusted OR were estimated by bivariable and multivariable logistic regression analysis with respective 95% CIs, respectively. A p value less than or equal to 0.05 was considered statistically significant. The seroprevalence of T. gondii among study participants was found to be 20.94%. Multivariable logistic regression for factors associated with T. gondii serostatus was modeled. After controlling for other factors, consumption of rodents for food (AOR = 10.52, 95% CI = 1.13-97.79, p = 0.039) and consumption of game meat (AOR = 3.84, 95% CI = 1.56-9.46, p = 0.003) were the best predictors of T. gondii seropositivity. Consumption of untreated water for drinking among study participants was found to be very high, although it was not associated with T. gondii seropositivity. This calls for the need for implementation of public health education with a particular emphasis on proper cooking of game meat and rodents before consumption and proper treatment of drinking water.
弓形虫病感染者无症状;然而,怀孕期间获得的感染对先天性寄生虫病的发展有很大的风险,导致妊娠结局不佳和以后生活中不同程度的脉络膜视网膜炎。因此,本研究旨在确定在达累斯萨拉姆选定医院分娩的孕妇中刚地弓形虫的血清阳性率及其相关因素。在坦桑尼亚达累斯萨拉姆选定的医院对191名孕妇进行了以医院为基础的分析横断面研究。使用预先测试的斯瓦希里语翻译的半结构化问卷来收集受访者的人口统计学特征,以及他们对弓形虫的风险概况和认识。根据生产商说明,使用FaStep TORCH IgG/IgM快速检测装置对采集的血样进行弓形虫IgG和IgM筛查。数据分析使用STATA Version 14 (StataCorp, Texas, United States);使用Microsoft Excel [2024] (Microsoft Corporation, Redmond, Washington, United States)绘制数据。通过双变量和多变量logistic回归分析估计粗OR和调整OR, ci分别为95%。p值小于或等于0.05被认为具有统计学意义。研究参与者中弓形虫的血清阳性率为20.94%。对与弓形虫血清状态相关的因素进行多变量logistic回归建模。在控制其他因素后,食用啮齿动物(A O R = 10.52, 95% C I = 1.13 ~ 97.79, p = 0.039)和食用野味肉(A O R = 3.84, 95% C I = 1.56 ~ 9.46, p = 0.003)是弓形虫血清阳性的最佳预测因子。研究参与者饮用未经处理的水的量非常高,尽管这与弓形虫血清阳性无关。这就要求开展公共卫生教育,特别强调在食用野味和啮齿动物之前应适当烹调,并对饮用水进行适当处理。
{"title":"Factors Associated With <i>Toxoplasma gondii</i> Infection Among Pregnant Women Admitted for Delivery in Selected Hospitals in Dar es Salaam, Tanzania.","authors":"Masauko Liponda, Secilia Ng Weshemi, David Munisi","doi":"10.1155/bmri/8584162","DOIUrl":"10.1155/bmri/8584162","url":null,"abstract":"<p><p>Toxoplasmosis is asymptomatic in infected individuals; however, infections acquired during pregnancy pose a significant risk of the development of congenital parasitosis, leading to poor pregnancy outcomes and various degrees of chorioretinitis later in life. This study was therefore designed to determine the seroprevalence of <i>Toxoplasma gondii</i> and its associated factors among pregnant women admitted for delivery in selected hospitals in Dar es Salaam. A hospital-based analytical cross-sectional study was conducted among 191 pregnant women who were admitted for delivery in the selected hospitals in Dar es Salaam, Tanzania. A pretested, Kiswahili-translated semistructured questionnaire was used to collect demographic characteristics of the respondents, as well as their risk profile and awareness on <i>T. gondii</i>. Collected blood samples were screened for <i>T. gondii</i> IgG and IgM using the FaStep TORCH IgG/IgM rapid test device as per the manufacturer's instructions. Data analysis was done using STATA Version 14 (StataCorp, Texas, United States); figures were plotted using Microsoft Excel [2024] (Microsoft Corporation, Redmond, Washington, United States). Crude and adjusted OR were estimated by bivariable and multivariable logistic regression analysis with respective 95% CIs, respectively. A <i>p</i> value less than or equal to 0.05 was considered statistically significant. The seroprevalence of <i>T. gondii</i> among study participants was found to be 20.94%. Multivariable logistic regression for factors associated with <i>T. gondii</i> serostatus was modeled. After controlling for other factors, consumption of rodents for food (<i>A</i> <i>O</i> <i>R</i> = 10.52, 95% <i>C</i> <i>I</i> = 1.13-97.79, <i>p</i> = 0.039) and consumption of game meat (<i>A</i> <i>O</i> <i>R</i> = 3.84, 95% <i>C</i> <i>I</i> = 1.56-9.46, <i>p</i> = 0.003) were the best predictors of <i>T. gondii</i> seropositivity. Consumption of untreated water for drinking among study participants was found to be very high, although it was not associated with <i>T. gondii</i> seropositivity. This calls for the need for implementation of public health education with a particular emphasis on proper cooking of game meat and rodents before consumption and proper treatment of drinking water.</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2026 ","pages":"8584162"},"PeriodicalIF":2.3,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12766278/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145910376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Pelvic organ prolapse (POP) is a common pelvic floor disorder in middle-aged and elderly women. Its pathophysiology is complex, involving weakened pelvic floor muscles and connective tissues. There is a need to explore its underlying pathogenesis and develop effective treatments.
Methods: We integrated single-cell sequencing (scRNA-seq) data analysis with Mendelian randomization (MR) analysis. scRNA-seq data of vaginal mucosal tissue were obtained from individuals with and without pelvic organ prolapse (POP); we then performed dimensionality reduction and cell subset identification. MR was conducted using GWAS summary statistics and eQTL data, following STROBE-MR guidelines. We also performed protein-protein interaction analysis, functional enrichment analysis, drug prediction, and molecular docking.
Results: We identified RBP7 as a POP risk factor and SCGB3A1 as a protective factor. RBP7 high expression increased POP risk (IVW, OR 1.262, 95% CI 1.093-1.459, p = 0.002), whereas SCGB3A1 high expression decreased it (IVW, OR 0.907, 95% CI 0.844-0.975, p = 0.008). We found associated key genes and their biological processes and signaling pathways. We also predicted potential drugs and their binding affinities.
Conclusion: The study highlights the significance of fibroblast gene expression changes in collagen metabolism for POP. It identified risk and protective genes and explored potential drugs. Future research should verify SCGB3A1 functions in fibroblasts, conduct preclinical drug trials, and clarify POP molecular mechanisms.
背景:盆腔器官脱垂(POP)是中老年妇女常见的盆底疾病。其病理生理是复杂的,涉及盆底肌肉和结缔组织的衰弱。有必要探索其潜在的发病机制并开发有效的治疗方法。方法:我们将单细胞测序(scRNA-seq)数据分析与孟德尔随机化(MR)分析相结合。对有无盆腔器官脱垂(POP)的患者进行阴道粘膜组织scRNA-seq分析;然后我们进行了降维和细胞子集识别。MR采用GWAS汇总统计和eQTL数据,遵循STROBE-MR指南。我们还进行了蛋白相互作用分析、功能富集分析、药物预测和分子对接。结果:我们确定RBP7是POP的危险因素,SCGB3A1是保护因素。RBP7高表达增加POP风险(IVW, OR 1.262, 95% CI 1.093 ~ 1.459, p = 0.002),而SCGB3A1高表达降低POP风险(IVW, OR 0.907, 95% CI 0.844 ~ 0.975, p = 0.008)。我们发现了相关的关键基因及其生物学过程和信号通路。我们还预测了潜在的药物及其结合亲和力。结论:本研究突出了成纤维细胞基因表达变化在POP胶原代谢中的意义。它确定了风险和保护基因,并探索了潜在的药物。未来的研究应验证SCGB3A1在成纤维细胞中的功能,开展临床前药物试验,明确POP的分子机制。
{"title":"Unraveling the Causal Linkages of <i>RBP7</i> and <i>SCGB3A1</i> on Pelvic Organ Prolapse: Multifaceted Insights From Genome-Wide Mendelian Randomization, Single-Cell RNA Analysis, and Network Pharmacology.","authors":"Ying Yang, Weiyuan Xing, Xiaoqin Wang, Qiran Sun, Ningning Hu, Liwen Zhang, Fuyun Dong, Rujun Chen","doi":"10.1155/bmri/9785848","DOIUrl":"10.1155/bmri/9785848","url":null,"abstract":"<p><strong>Background: </strong>Pelvic organ prolapse (POP) is a common pelvic floor disorder in middle-aged and elderly women. Its pathophysiology is complex, involving weakened pelvic floor muscles and connective tissues. There is a need to explore its underlying pathogenesis and develop effective treatments.</p><p><strong>Methods: </strong>We integrated single-cell sequencing (scRNA-seq) data analysis with Mendelian randomization (MR) analysis. scRNA-seq data of vaginal mucosal tissue were obtained from individuals with and without pelvic organ prolapse (POP); we then performed dimensionality reduction and cell subset identification. MR was conducted using GWAS summary statistics and eQTL data, following STROBE-MR guidelines. We also performed protein-protein interaction analysis, functional enrichment analysis, drug prediction, and molecular docking.</p><p><strong>Results: </strong>We identified <i>RBP7</i> as a POP risk factor and <i>SCGB3A1</i> as a protective factor. <i>RBP7</i> high expression increased POP risk (IVW, OR 1.262, 95% CI 1.093-1.459, <i>p</i> = 0.002), whereas <i>SCGB3A1</i> high expression decreased it (IVW, OR 0.907, 95% CI 0.844-0.975, <i>p</i> = 0.008). We found associated key genes and their biological processes and signaling pathways. We also predicted potential drugs and their binding affinities.</p><p><strong>Conclusion: </strong>The study highlights the significance of fibroblast gene expression changes in collagen metabolism for POP. It identified risk and protective genes and explored potential drugs. Future research should verify <i>SCGB3A1</i> functions in fibroblasts, conduct preclinical drug trials, and clarify POP molecular mechanisms.</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2026 ","pages":"9785848"},"PeriodicalIF":2.3,"publicationDate":"2026-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12765987/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145910289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-30eCollection Date: 2025-01-01DOI: 10.1155/bmri/9793730
[This corrects the article DOI: 10.1155/2021/2899043.].
[这更正了文章DOI: 10.1155/2021/2899043.]
{"title":"Correction to \"Highly Porous 3D Printed Tantalum Scaffolds Have Better Biomechanical and Microstructural Properties Than Titanium Scaffolds\".","authors":"","doi":"10.1155/bmri/9793730","DOIUrl":"10.1155/bmri/9793730","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1155/2021/2899043.].</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2025 ","pages":"9793730"},"PeriodicalIF":2.3,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12750442/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145877660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-30eCollection Date: 2025-01-01DOI: 10.1155/bmri/9848297
[This corrects the article DOI: 10.1155/2013/719858.].
[这更正了文章DOI: 10.1155/2013/719858.]。
{"title":"Correction to \"Alantolactone Induces Apoptosis in HepG2 Cells Through GSH Depletion, Inhibition of STAT3 Activation, and Mitochondrial Dysfunction\".","authors":"","doi":"10.1155/bmri/9848297","DOIUrl":"10.1155/bmri/9848297","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1155/2013/719858.].</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2025 ","pages":"9848297"},"PeriodicalIF":2.3,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12750443/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145877696","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-29eCollection Date: 2025-01-01DOI: 10.1155/bmri/4147524
Gamal M El-Sherbiny, Mohamed H Kalaba
The marine environment is a significant origin of bioactive substances like carotenoids. Marine carotenoids are secondary metabolites with mechanism-anchored benefits across redox, immune, and metabolic pathways, comprising antioxidant, anti-inflammatory, antidiabetic, anticancer, and antimicrobial activities. These bioactive compounds have garnered significant interest from the pharmaceutical, nutraceutical, and cosmetic industries, driving the exploration for novel natural reservoirs of carotenoids. However, most of the research has focused on carotenoids found in fruits, vegetables, and other higher plant components. Despite increasing interest, there are few publications on carotenoids found in marine sources such as seaweed, microalgae, and marine animals. This review summarizes chemistry, biosynthesis, extraction methods, bioavailability, and the bioactivities reported for major marine carotenoids (e.g., α- and β-carotene, lycopene, fucoxanthin, astaxanthin, zeaxanthin, canthaxanthin, spirilloxanthin, halocynthiaxanthin, neoxanthin, and peridinin).
{"title":"Marine Carotenoids: A Critical Review of Bioactivities, Bioavailability, and Therapeutic Potential.","authors":"Gamal M El-Sherbiny, Mohamed H Kalaba","doi":"10.1155/bmri/4147524","DOIUrl":"10.1155/bmri/4147524","url":null,"abstract":"<p><p>The marine environment is a significant origin of bioactive substances like carotenoids. Marine carotenoids are secondary metabolites with mechanism-anchored benefits across redox, immune, and metabolic pathways, comprising antioxidant, anti-inflammatory, antidiabetic, anticancer, and antimicrobial activities. These bioactive compounds have garnered significant interest from the pharmaceutical, nutraceutical, and cosmetic industries, driving the exploration for novel natural reservoirs of carotenoids. However, most of the research has focused on carotenoids found in fruits, vegetables, and other higher plant components. Despite increasing interest, there are few publications on carotenoids found in marine sources such as seaweed, microalgae, and marine animals. This review summarizes chemistry, biosynthesis, extraction methods, bioavailability, and the bioactivities reported for major marine carotenoids (e.g., <i>α</i>- and <i>β</i>-carotene, lycopene, fucoxanthin, astaxanthin, zeaxanthin, canthaxanthin, spirilloxanthin, halocynthiaxanthin, neoxanthin, and peridinin).</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2025 ","pages":"4147524"},"PeriodicalIF":2.3,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12746009/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145861824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-29eCollection Date: 2025-01-01DOI: 10.1155/bmri/1269905
Areeg Anwer Ali, Bhoomendra A Bhongade, Fatima Mohamed Alkaabi
There have been some concerns about the potential adverse consequences of proton pump inhibitors (PPIs) on bone health, specifically with respect to bone mineral density (BMD). The objective of the present investigation was to evaluate the impact of PPIs on BMD in the lumbar spine, femoral neck, and total hip regions. On the basis of PRISMA, a systematic review and meta-analysis were performed. PubMed, Scopus, Cochrane Library, and Google Scholar were used to find eligible observational studies published between January 2010 and January 2025. The ROBINS-I tool was employed to evaluate potential for bias, and studies with critical bias were excluded. To synthesize the data, random-effects models were utilized, and the I2 statistic was used to evaluate heterogeneity. The sensitivity analyses and publication bias were also performed. A systematic review and quantitative synthesis used 20 and seven records, respectively, of 170 records screened. The comprehensive pooled analysis revealed that the decrease in BMD with the use of PPIs was modest yet statistically significant (SMD -0.15, 95% CI -0.21 to 0.09) alongside a substantial degree of heterogeneity (I2 = 93.6%). Subgroup analysis demonstrated that there were significant decreases at the femoral neck (SMD -0.27, 95% CI -0.46 to -0.09), but not at the lumbar spine or the total hip. The funnel plot analysis indicated a certain level of asymmetry, and the sensitivity analysis indicated that the results were mostly robust; unless the study that excluded one outlier was used in the analysis, then the lumbar spine results would change. The use of PPIs is related to a significant but relatively small decrease in BMD, most obvious at the femoral neck, although findings across anatomical locations are heterogeneous. The results of this study support the cautious use of PPIs in all people at risk of osteoporosis and the need to conduct a high-quality prospective study to understand site-specific effects in the future.
关于质子泵抑制剂(PPIs)对骨骼健康的潜在不良后果,特别是对骨矿物质密度(BMD)的潜在不良后果,一直存在一些担忧。本研究的目的是评估PPIs对腰椎、股骨颈和全髋区的骨密度的影响。在PRISMA的基础上,进行系统评价和meta分析。使用PubMed、Scopus、Cochrane Library和谷歌Scholar检索2010年1月至2025年1月间发表的符合条件的观察性研究。采用ROBINS-I工具评估潜在偏倚,排除严重偏倚的研究。为了综合数据,采用随机效应模型,采用i2统计量评价异质性。还进行了敏感性分析和发表偏倚。系统评价和定量综合分别使用了筛选的170个记录中的20个和7个记录。综合汇总分析显示,使用PPIs的骨密度下降幅度不大,但具有统计学意义(SMD -0.15, 95% CI -0.21至0.09),同时存在很大程度的异质性(i2 = 93.6%)。亚组分析显示,股骨颈有显著降低(SMD -0.27, 95% CI -0.46至-0.09),但腰椎或全髋关节无明显降低。漏斗图分析显示有一定程度的不对称性,敏感性分析显示结果大多是稳健的;除非在分析中使用了排除一个异常值的研究,否则腰椎的结果将会改变。使用PPIs与显著但相对较小的骨密度下降有关,在股骨颈最明显,尽管不同解剖位置的结果不同。本研究的结果支持在所有有骨质疏松风险的人群中谨慎使用PPIs,并需要进行高质量的前瞻性研究以了解未来的部位特异性效应。
{"title":"The Effect of Proton Pump Inhibitors on Bone Mineral Density at Specific Anatomical Sites: A Systematic Review and Meta-Analysis.","authors":"Areeg Anwer Ali, Bhoomendra A Bhongade, Fatima Mohamed Alkaabi","doi":"10.1155/bmri/1269905","DOIUrl":"10.1155/bmri/1269905","url":null,"abstract":"<p><p>There have been some concerns about the potential adverse consequences of proton pump inhibitors (PPIs) on bone health, specifically with respect to bone mineral density (BMD). The objective of the present investigation was to evaluate the impact of PPIs on BMD in the lumbar spine, femoral neck, and total hip regions. On the basis of PRISMA, a systematic review and meta-analysis were performed. PubMed, Scopus, Cochrane Library, and Google Scholar were used to find eligible observational studies published between January 2010 and January 2025. The ROBINS-I tool was employed to evaluate potential for bias, and studies with critical bias were excluded. To synthesize the data, random-effects models were utilized, and the <i>I</i> <sup>2</sup> statistic was used to evaluate heterogeneity. The sensitivity analyses and publication bias were also performed. A systematic review and quantitative synthesis used 20 and seven records, respectively, of 170 records screened. The comprehensive pooled analysis revealed that the decrease in BMD with the use of PPIs was modest yet statistically significant (SMD -0.15, 95% CI -0.21 to 0.09) alongside a substantial degree of heterogeneity (<i>I</i> <sup>2</sup> = 93.6<i>%</i>). Subgroup analysis demonstrated that there were significant decreases at the femoral neck (SMD -0.27, 95% CI -0.46 to -0.09), but not at the lumbar spine or the total hip. The funnel plot analysis indicated a certain level of asymmetry, and the sensitivity analysis indicated that the results were mostly robust; unless the study that excluded one outlier was used in the analysis, then the lumbar spine results would change. The use of PPIs is related to a significant but relatively small decrease in BMD, most obvious at the femoral neck, although findings across anatomical locations are heterogeneous. The results of this study support the cautious use of PPIs in all people at risk of osteoporosis and the need to conduct a high-quality prospective study to understand site-specific effects in the future.</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2025 ","pages":"1269905"},"PeriodicalIF":2.3,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12748532/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145877620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
To develop a telomere-related prognostic signature for esophageal carcinoma (ESCA), we integrated bioinformatics and machine learning approaches. Hub genes were identified from overlapping differentially expressed genes (DEGs). A prognostic model was constructed using LASSO and multivariate Cox regression, validated in independent GEO datasets, and further verified through cytological experiments. We also elucidated the mechanism by which MAPK12 promotes ESCA migration. The model robustly predicted survival of patients with ESCA, supported by both high-throughput data and experimental evidence. Our findings highlight MAPK12 as a promising biomarker and provide a theoretical basis for understanding ESCA pathogenesis and developing targeted therapies.
{"title":"Identification of MAPK12 as a Prognostic Biomarker for Esophageal Carcinoma Using Bioinformatics and Machine Learning.","authors":"Shuyuan Gu, Xinyang Yan, Shihui Chen, Zepeng Dong, Xiaopeng Li, Changchun Ye, Chenye Zhao, Hang Yuan, Xuejun Sun, Wei Zhao, Peng Zhang","doi":"10.1155/bmri/2605071","DOIUrl":"10.1155/bmri/2605071","url":null,"abstract":"<p><p>To develop a telomere-related prognostic signature for esophageal carcinoma (ESCA), we integrated bioinformatics and machine learning approaches. Hub genes were identified from overlapping differentially expressed genes (DEGs). A prognostic model was constructed using LASSO and multivariate Cox regression, validated in independent GEO datasets, and further verified through cytological experiments. We also elucidated the mechanism by which MAPK12 promotes ESCA migration. The model robustly predicted survival of patients with ESCA, supported by both high-throughput data and experimental evidence. Our findings highlight MAPK12 as a promising biomarker and provide a theoretical basis for understanding ESCA pathogenesis and developing targeted therapies.</p>","PeriodicalId":9007,"journal":{"name":"BioMed Research International","volume":"2025 ","pages":"2605071"},"PeriodicalIF":2.3,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12746012/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145861816","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}