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A novel synergistic action of phage vB_PaeP_GZMU_A1002 with allicin against carbapenem-resistant Pseudomonas aeruginosa. 噬菌体vB_PaeP_GZMU_A1002与大蒜素对耐碳青霉烯假单胞菌的协同作用
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-06 DOI: 10.1186/s13062-025-00726-8
Yuan Fu, Jiayi Liu, Yinglin Yin, Kailin Yuan, Ziru Zhou, Lei Xu, Sifang Dou, Baoqi Cai, Zhihuang He, Wanyu Wang, Qiang Xiao, Ping Chen
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引用次数: 0
Integrative multi-omics analysis widens annotation and functional insights into long non-coding RNAs of Arabidopsis thaliana. 整合多组学分析扩大了对拟南芥长链非编码rna的注释和功能见解。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-05 DOI: 10.1186/s13062-025-00718-8
A T Vivek, Harikumar Kiran, Namrata Sahu, Garima Kalakoti, Shailesh Kumar
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引用次数: 0
Organelle-specific regulation of ferroptosis. 铁下垂的细胞器特异性调节。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-02 DOI: 10.1186/s13062-025-00717-9
Yu Zhang, Mengyan Liu, Min Li, Yile Wu, Mi Xie, Xiaolong Liu, Haodong Lu, Xiaoyan Zhai, Yanling Yang
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引用次数: 0
Spatiotemporal dynamics of neuronal subtypes and their interactions with glia following intracortical electrode implantation. 皮层内电极植入后神经元亚型的时空动态及其与胶质细胞的相互作用。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2025-12-29 DOI: 10.1186/s13062-025-00719-7
Zhi Zhao, Xiaoge Duan, Jiaqi Luo, Zhaoyuan He, Yuxue Zhang, Meiting Wang, Jiaoqin Qin, Sen Lin, Hailan Chen
{"title":"Spatiotemporal dynamics of neuronal subtypes and their interactions with glia following intracortical electrode implantation.","authors":"Zhi Zhao, Xiaoge Duan, Jiaqi Luo, Zhaoyuan He, Yuxue Zhang, Meiting Wang, Jiaoqin Qin, Sen Lin, Hailan Chen","doi":"10.1186/s13062-025-00719-7","DOIUrl":"10.1186/s13062-025-00719-7","url":null,"abstract":"","PeriodicalId":9164,"journal":{"name":"Biology Direct","volume":" ","pages":"13"},"PeriodicalIF":4.9,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12853883/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145854449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Partial inhibition of viral replication machinery enhances recombination in herpes simplex viruses. 部分抑制病毒复制机制可增强单纯疱疹病毒的重组。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2025-12-24 DOI: 10.1186/s13062-025-00711-1
Maya Ralph-Altman, Daniel Avhar, Yuval Altman, Itai Cohen, Hadas Azulay, Tal Korner, Sireen Sweed, Enosh Tomer, Oren Kobiler
{"title":"Partial inhibition of viral replication machinery enhances recombination in herpes simplex viruses.","authors":"Maya Ralph-Altman, Daniel Avhar, Yuval Altman, Itai Cohen, Hadas Azulay, Tal Korner, Sireen Sweed, Enosh Tomer, Oren Kobiler","doi":"10.1186/s13062-025-00711-1","DOIUrl":"10.1186/s13062-025-00711-1","url":null,"abstract":"","PeriodicalId":9164,"journal":{"name":"Biology Direct","volume":" ","pages":"9"},"PeriodicalIF":4.9,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12829068/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145826917","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
IGF2 regulates proliferation, differentiation, and mitochondrial bioenergetics in human satellite cells. IGF2调节人卫星细胞的增殖、分化和线粒体生物能量学。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2025-12-22 DOI: 10.1186/s13062-025-00716-w
Ramouna Voshtani, Pengbo Hou, Zhanhong Liu, Lijuan Cao, Chao Feng, Changshun Shao, Yufang Shi, Jiankai Fang
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引用次数: 0
Ecological determinants of altruism in prokaryote antivirus defense. 原核生物反病毒防御中利他主义的生态决定因素。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2025-12-20 DOI: 10.1186/s13062-025-00699-8
Dmitry A Biba, Kira S Makarova, Yuri I Wolf, Levi Waldron, Eugene V Koonin, Nash D Rochman

Prokaryote evolution is driven in large part by the incessant arms race with viruses. Genomic investments in antivirus defense can be coarsely classified into two categories, immune systems that abrogate virus reproduction resulting in clearance, and programmed cell death (PCD) systems. Prokaryotic defense systems are enormously diverse, as revealed by an avalanche of recent discoveries, but the basic ecological determinants of defense strategy remain poorly understood. Through mathematical modeling of defense against lytic virus infection, we identify two principal determinants of optimal defense strategy and, through comparative genomics, we test this model by measuring the genomic investment into immunity vs. PCD among diverse bacteria and archaea. First, as viral pressure grows, immunity becomes the preferred defense strategy. Second, as host population size grows, PCD becomes the preferred strategy. We additionally predict that, although optimal strategy typically involves investment in both PCD and immunity, investment in immunity can also result in antagonism, increasing the likelihood that a PCD-competent cell will lyse due to infection. Together, these findings indicate that, generally, PCD is preferred at low multiplicity of infection (MOI) and immunity is preferred at high MOI. Finally, we demonstrate that PCD, which is typically considered to be an altruistic trait, is in some cases neutral and can be maintained in an unstructured population over an evolutionary timescale. Our work shows that the landscape of prokaryotic antivirus defense is substantially more complex than previously suspected.

原核生物的进化在很大程度上是由与病毒不断的军备竞赛推动的。在反病毒防御方面的基因组投资可以大致分为两类,一类是消除病毒繁殖导致清除的免疫系统,另一类是程序性细胞死亡(PCD)系统。正如最近的大量发现所揭示的那样,原核生物的防御系统种类繁多,但对防御策略的基本生态决定因素仍然知之甚少。通过对裂解病毒感染防御的数学建模,我们确定了最优防御策略的两个主要决定因素,并通过比较基因组学,我们通过测量不同细菌和古细菌对免疫与PCD的基因组投资来测试该模型。首先,随着病毒压力的增加,免疫成为首选的防御策略。其次,随着宿主种群规模的增长,PCD成为首选策略。我们还预测,尽管最佳策略通常涉及对PCD和免疫的投资,但对免疫的投资也可能导致拮抗,增加PCD-competent cell因感染而溶解的可能性。总之,这些发现表明,一般来说,PCD在低感染多重性(MOI)下优先,免疫在高感染多重性(MOI)下优先。最后,我们证明了通常被认为是利他主义特征的PCD在某些情况下是中性的,并且可以在进化时间尺度上在非结构化种群中保持。我们的工作表明,原核病毒防御的景观比以前怀疑的要复杂得多。
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引用次数: 0
Platelet-activating factor induces ferroptosis by binding to ATF3 and inhibiting the SLC7A11/GPX4 axis to suppress the progression of endometrial carcinoma. 血小板活化因子通过与ATF3结合,抑制SLC7A11/GPX4轴,诱导铁下垂,抑制子宫内膜癌的进展。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2025-12-15 DOI: 10.1186/s13062-025-00713-z
Feifei Pan, Yuqing Qiu, Zhuojie Huang, Yanqin Zheng, Yun Chen, Yiming Song, Zhe-Sheng Chen, Lirong Guo, Jingyao Wang, Xiaojie Liu, Zixin Tao, Yaqiong Liu, Xingcui Xuan, Kunxiang Gong, Kun Shi
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引用次数: 0
KIF4A in disease pathogenesis and therapeutics: from molecular mechanisms to clinical translation. KIF4A在疾病发病和治疗中的作用:从分子机制到临床翻译。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2025-12-08 DOI: 10.1186/s13062-025-00712-0
Yi Liu, Yunhua Li, Chunrong Tang, Honghua Wen, Jingxian Tang, Gangwen Chen, Yongkang Wu

Kinesin family member 4 A (KIF4A) is a multifunctional motor protein essential for chromosome condensation, spindle dynamics, and cytokinesis. Beyond its classical mitotic functions, emerging evidence positions KIF4A as a central regulator of tumorigenesis, therapy resistance, metabolic reprogramming, and immune modulation across diverse cancer types. However, no comprehensive review has integrated its molecular mechanisms with its roles in both oncological and non-oncological diseases, nor clarified its context-dependent behavior, including paradoxical tumor-suppressive effects in cervical cancer. In this review, we synthesize current advances spanning structural biology, transcriptional and post-translational regulation, and pathway-level interactions involving PI3K/AKT, TGF-β/Smad, Hippo-YAP, metabolic remodeling, and DNA damage response networks. We summarize KIF4A's expression and functions across more than 30 malignant tumors and multiple non-neoplastic conditions-including neurodevelopmental disorders, autoimmune diseases, viral infections, fibrotic diseases, and congenital anomalies-highlighting shared molecular themes and disease-specific distinctions. A notable finding is KIF4A's context dependency: while generally oncogenic, high KIF4A expression in cervical cancer correlates with improved survival, suggesting HPV-specific transcriptional rewiring, altered phosphorylation states, or compensatory genome stabilization as potential mechanisms.We further evaluate the translational implications of KIF4A as a biomarker for diagnosis, prognosis, and treatment response, and we critically examine therapeutic strategies targeting KIF4A-ranging from small-molecule inhibitors and gene-silencing approaches to miRNA therapeutics, exosome-based delivery systems, and neoantigen-directed immunotherapy. Finally, we outline major challenges to clinical translation, including its essential roles in mitosis and neuronal integrity, the need for tumor-selective delivery platforms, and incomplete understanding of its tissue-specific functions. Collectively, this review provides a unified mechanistic and translational framework for understanding KIF4A across human diseases, identifies key knowledge gaps, and proposes future research directions to enable safe and effective targeting of this biologically indispensable protein.

运动蛋白家族成员4a (KIF4A)是染色体凝聚、纺锤体动力学和细胞分裂所必需的多功能运动蛋白。除了其经典的有丝分裂功能外,新出现的证据表明KIF4A是多种癌症类型的肿瘤发生、治疗耐药性、代谢重编程和免疫调节的中心调节因子。然而,目前还没有全面的综述将其分子机制与其在肿瘤和非肿瘤疾病中的作用结合起来,也没有阐明其环境依赖性行为,包括在宫颈癌中的矛盾的肿瘤抑制作用。在这篇综述中,我们综合了结构生物学、转录和翻译后调控以及涉及PI3K/AKT、TGF-β/Smad、Hippo-YAP、代谢重塑和DNA损伤反应网络的途径水平相互作用的最新进展。我们总结了KIF4A在30多种恶性肿瘤和多种非肿瘤性疾病(包括神经发育障碍、自身免疫性疾病、病毒感染、纤维化疾病和先天性异常)中的表达和功能,强调了共同的分子主题和疾病特异性差异。一个值得注意的发现是KIF4A的环境依赖性:虽然通常是致癌的,但KIF4A在宫颈癌中的高表达与生存率的提高相关,这表明hpv特异性转录重连接、磷酸化状态改变或代偿性基因组稳定是潜在的机制。我们进一步评估了KIF4A作为诊断、预后和治疗反应的生物标志物的翻译意义,并严格检查了针对KIF4A的治疗策略,从小分子抑制剂和基因沉默方法到miRNA治疗、基于外泌体的递送系统和新抗原定向免疫治疗。最后,我们概述了临床翻译面临的主要挑战,包括其在有丝分裂和神经元完整性中的重要作用,对肿瘤选择性传递平台的需求,以及对其组织特异性功能的不完全了解。总的来说,本综述为理解人类疾病中的KIF4A提供了一个统一的机制和翻译框架,确定了关键的知识空白,并提出了未来的研究方向,以安全有效地靶向这种生物学上不可或缺的蛋白质。
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引用次数: 0
Effect of pesticides on breast cancer tumor. 农药对乳腺癌肿瘤的影响。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2025-12-08 DOI: 10.1186/s13062-025-00709-9
Daniele Marcoccia, Stefano Palomba, Giovanni Brajon, Alessandro Baldi, Flavia Silvia Galli, Francesca Servadei, Valeria Palumbo, Rita Bonfiglio, Michele Treglia, Luigi Tonino Marsella, Flavia Botti, Yufang Shi, Eleonora Candi, Gerry Melino, Alessandro Mauriello, Manuel Scimeca
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引用次数: 0
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Biology Direct
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