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Integrated omics reveal phenylpropanoid biosynthesis as a key defense pathway against Meloidogyne incognita in Cucumis metuliferus. 整合组学揭示了苯丙素的生物合成是黄瓜对不知名旋律线虫的关键防御途径。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08301-7
Yaru Wang, Mingming Dong, Min Feng, Li Shan, Xi Zhao, Tiantian Pei, Yingqi Shi, Yifan Xu, Yibing Zhao, Hao Xue, Xinyue Ma, Qian Liu, Huaimeng Chen, Huazhong Ren, Xingwang Liu
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引用次数: 0
Modulation of growth, essential oil yield, and cytotoxic properties of Cymbopogon martinii through biostimulant application in the sub-humid western Himalayas. 在喜马拉雅西部半湿润地区应用生物刺激素对Cymbopogon martinii生长、精油产量和细胞毒性的调节。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08243-0
Akhilesh Kumar Sharma, Saizal Jamwal, Swati Dhiman, Ankita Kumari, Yogendra Padwad, Arup Ghosh, Rakesh Kumar
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引用次数: 0
Visualizing nutrient synergies: STCR approach towards NPK balancing and yield targeting in barnyard millet. 可视化养分协同效应:STCR方法对谷子氮磷钾平衡和产量目标的影响。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-025-08073-6
Krishna Murthy Rangaiah, Govinda Kasturappa, Bhavya Nagaraju, Shivakumara Maragondanadibba Nanjundappa, Uday Kumar Sugaturu Narayanaswamy, Sanjay Srivastava, Immanuel Chongboi Haokip, Pradip Dey

Background: Achieving higher productivity and long-term sustainability in millet-based systems requires precision nutrient management that considers soil variability, crop demand, and soil health. Barnyard millet (Echinochloa frumentacea), a climate-resilient, short-duration, and nutrient-rich crop, is commonly cultivated under low-input conditions but has considerable potential when grown under balanced fertilization. The study aimed to develop and validate Soil Test Crop Response (STCR)-based fertilizer prescription equations for barnyard millet, enabling precise NPK management with and without farmyard manure (FYM), and to compare their performance with conventional recommendation methods. A three-year field program (2022-2024) was conducted on Alfisols at the Zonal Agricultural Research Station, UAS Bangalore, involving fertility gradient establishment, test crop trials, and validation experiments.

Results: Key parameters including nutrient requirement, soil contribution, fertilizer efficiency, and FYM contribution coefficients were derived to formulate STCR equations for targeted grain yields. Treatments compared STCR-NPK, STCR NPK + FYM, general recommended dose, soil fertility rating approach, and absolute control. Results indicated that STCR-based prescriptions achieved the targeted yield within ± 10% variation. Integrated application of NPK and FYM under the STCR approach recorded the highest grain yield (28.1 q ha⁻1), with N, P and K agronomic efficiency reaching about 37-49, 62-64 and 93-107 kg grain kg⁻1 nutrient applied, respectively, and recovery efficiency improving to about 1.35-1.65, 0.66-0.76 and 3.14-3.14 kg kg⁻1, thereby surpassing conventional recommendation methods. Although the value-cost ratio decreased slightly due to FYM cost, soil fertility, nutrient balance, and long-term system resilience improved. Nitrogen had the greatest impact on yield increase, but balanced NPK combined with FYM ensured superior productivity and nutrient-use efficiency.

Conclusions: The STCR approach with FYM integration enhances soil fertility, nutrient-use efficiency (higher RE and PFP for NPK vs. GRD/soil rating), and system resilience while achieving targeted yields within ± 10%. This provides a viable pathway for sustainable millet intensification across agroecological conditions.

背景:在以小米为基础的系统中实现更高的生产力和长期可持续性需要精确的养分管理,考虑土壤变异性、作物需求和土壤健康。谷子(Echinochloa frumentacea)是一种气候适应性强、生育期短、营养丰富的作物,通常在低投入条件下种植,但在平衡施肥条件下种植具有相当大的潜力。本研究旨在建立和验证基于土壤试验作物响应(STCR)的谷子肥料配方方程,实现有和无农家肥的氮磷钾精确管理,并将其与传统推荐方法的性能进行比较。在UAS班加罗尔区域农业研究站对Alfisols进行了为期三年的田间项目(2022-2024),包括肥力梯度建立、试验作物试验和验证实验。结果:导出养分需要量、土壤贡献率、肥效和FYM贡献系数等关键参数,建立目标粮食产量STCR方程。比较了STCR-NPK、STCR NPK + FYM、一般推荐剂量、土壤肥力分级法和绝对控制。结果表明,基于stcr的处方在±10%的变化范围内达到了目标收率。在STCR方法下,NPK和FYM的综合应用取得了最高的粮食产量(28.1 q ha -1), N, P和K的农艺效率分别达到37-49,62-64和93-107 kg,恢复效率提高到1.35-1.65,0.66-0.76和3.14-3.14 kg kg -⁻1,超过了传统的推荐方法。虽然由于FYM成本的影响,价值成本比略有下降,但土壤肥力、养分平衡和长期系统弹性得到改善。氮肥对增产的影响最大,但氮磷钾配化肥能保证高产和养分利用效率。结论:与FYM相结合的STCR方法提高了土壤肥力、养分利用效率(NPK的RE和PFP高于GRD/土壤等级)和系统弹性,同时实现了±10%的目标产量。这为跨越农业生态条件的谷子可持续集约化提供了一条可行途径。
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引用次数: 0
Identification of candidate genes associated with regreening stage in rapeseed (Brassica Rapa L.) by combined application of BSA-Seq and RNA-Seq. BSA-Seq和RNA-Seq联合应用于油菜绿期相关候选基因的鉴定
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08345-9
Mingwei Guan, Anqiang Guo, Heping Li, Lanju Zhai, Jiming Li, Aiguo Li

Background: The regreening stage (RS) is a critical agronomic trait impacting yield potential in rapeseed (Brassica rapa L.), yet its underlying genetic mechanisms remain largely unexplored. Field observations indicate that early-regreening cultivars, like 'Hengyou 8', exhibit a longer grain-filling period and higher thousand-seed weight (TSW) compared to late-regreening cultivars like 'Hengyou 6'. This study aimed to systematically dissect the genetic basis of RS initiation to identify key regulatory genes and provide resources for molecular breeding.

Results: We constructed an F₂ population from a cross between 'Hengyou 8' and 'Hengyou 6' and employed Bulk Segregant Analysis sequencing (BSA-seq), which identified 11 quantitative trait loci (QTLs) associated with RS on chromosomes A01, A02, A04, A05, A06, A08, A09, and A10. Concurrently, transcriptome sequencing (RNA-seq) of shoot apical meristems and roots across the RS process revealed 17,242 differentially expressed genes (DEGs). Integrated analysis of BSA-seq and RNA-seq data pinpointed 15 high-confidence candidate genes within the QTL regions. These include NAC016, NAC017, MYC2, and DDE2, which are primarily involved in jasmonic acid (JA) metabolism, phytohormone signaling, cell development, and stress responses. Expression profiling showed distinct spatiotemporal patterns for these genes between the parental lines, suggesting their roles in modulating the timing of regreening.

Conclusions: Our findings provide the first comprehensive genetic map of the regreening process in rapeseed, revealing a dynamic regulatory network centered on JA signaling and stress response pathways. The identified candidate genes and associated molecular markers establish a valuable resource and a solid theoretical foundation for future functional studies. More importantly, we have identified direct targets for marker-assisted selection (MAS). This provides a foundation for breeding novel rapeseed cultivars with optimized regreening timing and enhanced yield potential.

背景:绿期(RS)是影响油菜产量潜力的重要农艺性状,但其潜在的遗传机制尚不清楚。田间观察表明,早绿品种‘恒优8号’灌浆期较晚绿品种‘恒优6号’更长,千粒重更高。本研究旨在系统剖析RS起始的遗传基础,鉴定关键调控基因,为分子育种提供资源。结果:以‘恒优8号’和‘恒优6号’为材料构建F₂群体,采用BSA-seq测序技术,在A01、A02、A04、A05、A06、A08、A09和A10染色体上鉴定出11个与RS相关的数量性状位点。同时,对茎尖分生组织和根系进行转录组测序(RNA-seq),发现17242个差异表达基因(DEGs)。BSA-seq和RNA-seq数据的综合分析在QTL区域内确定了15个高置信度的候选基因。其中包括NAC016、NAC017、MYC2和DDE2,它们主要参与茉莉酸(JA)代谢、植物激素信号传导、细胞发育和应激反应。这些基因在亲本系之间的表达谱显示出不同的时空模式,表明它们在调节变绿时间方面的作用。结论:我们的研究结果首次提供了油菜籽重绿过程的全面遗传图谱,揭示了一个以JA信号和胁迫反应途径为中心的动态调控网络。所鉴定的候选基因和相关分子标记为今后的功能研究提供了宝贵的资源和坚实的理论基础。更重要的是,我们已经确定了标记辅助选择(MAS)的直接靶点。这为选育适宜复绿时间和提高产量潜力的油菜籽新品种奠定了基础。
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引用次数: 0
Seed endophytic bacteria are involved in metal adaptation of Orobanche lutea: community dynamics and plant growth promotion traits. 种子内生细菌参与了黄花苜蓿的金属适应:群落动态和植物生长促进性状。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08304-4
Kristine Petrosyan, Sofie Thijs, Tomasz Krucon, Renata Piwowarczyk, Karolina Wiśniewska, Wiesław Kaca, Jaco Vangronsveld
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引用次数: 0
Insecticidal potential of Lantana camara L. ethanol and nano-silver extracts against the potato tuber moth (Phthorimaea operculella [Zeller]). 山药乙醇和纳米银提取物对马铃薯块茎蛾(Phthorimaea operculella [Zeller])的杀虫潜力。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08292-5
Ayşe Yeşilayer, Erhan Gülsoy

The extensive reliance on synthetic pesticides has led to considerable ecological disruption and negative impacts on non-target organisms worldwide. As a sustainable alternative, nanotechnology offers promising avenues for the development of innovative and environmentally safe biopesticides. In this study, the insecticidal efficacy of ethanol and silver nanoparticles (AgNPs) extracts derived from Lantana camara L. was evaluated against the eggs and larvae of the Potato Tuber Moth (Phthorimaea operculella [Zeller, 1873]), a quarantine pest of major concern in potato production in Türkiye. Toxicological assessments revealed dose-dependent larvae mortality, with LC₅₀-LC₉₀ values ranging from 6.49-51.45 ppm for ethanol extracts and 1.47-5.88 ppm for AgNPs formulations. Maximum inhibition of egg hatching was observed at 12% ethanol extract (86.51%) and 200 ppm AgNPs treatment (94.95%). Bioassay results demonstrated that AgNPs formulations of L. camara were significantly more effective than ethanol extracts in suppressing both larval and egg development. Moreover, potato tubers treated with AgNPs exhibited a pronounced reduction in adult moth emergence compared to untreated controls. Collectively, these findings highlight the potential of L. camara nano-silver extracts as a sustainable biopesticide candidate for integrated management of P. operculella.

对合成农药的广泛依赖导致了相当大的生态破坏和对全球非目标生物的负面影响。作为一种可持续的替代方案,纳米技术为开发创新和环境安全的生物农药提供了有希望的途径。在本研究中,研究了从大蕉中提取的乙醇和银纳米颗粒(AgNPs)提取物对马铃薯块茎蛾(Phthorimaea operculella [Zeller, 1873])虫卵和幼虫的杀虫效果,马铃薯块茎蛾是马铃薯生产中主要关注的检疫性害虫。毒理学评估显示,幼虫死亡率与剂量有关,乙醇提取物的LC₅₀-LC₉₀值为6.49-51.45 ppm, AgNPs配方的值为1.47-5.88 ppm。12%乙醇提取物(86.51%)和200 ppm AgNPs处理(94.95%)对卵孵化的抑制作用最大。生物测定结果表明,与乙醇提取物相比,玉米螟AgNPs制剂在抑制幼虫和卵发育方面的效果明显更好。此外,与未处理的对照相比,用AgNPs处理的马铃薯块茎显示出成虫羽化的显著减少。综上所述,这些发现突出了camara纳米银提取物作为一种可持续性生物农药的潜力,可用于包皮假单胞菌的综合治理。
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引用次数: 0
Transcriptomic and metabolomic analysis reveals key genes and metabolites in common vetch (Vicia sativa L.) response to drought stress. 转录组学和代谢组学分析揭示了普通野豌豆(Vicia sativa L.)对干旱胁迫响应的关键基因和代谢物。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08325-z
Die Huang, Qian Kuang, Kaitai Pan, Heping Huang, Chenggang He, Hua Jiang
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引用次数: 0
Genome-wide characterization of the PHT gene family in Uncaria rhynchophylla identified UrPHT1;11 as a key regulator to low phosphorus response. 钩带钩蟹PHT基因家族的全基因组分析11作为低磷响应的关键调节因子。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08320-4
Guangquan Lv, Liyang Shangguan, Zhengxi Long, Qimeng Xiao, Hu Tao, Liu Tang, Qiuyu Lv, Fulin Yan, Dandan Liu, Miao Liu, Xue Li, Yongqin Xiong, Wei Qiang, Mingsheng Zhang
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引用次数: 0
FANS uncovers WOX2-associated early regulators of auxin-induced somatic embryogenesis in Arabidopsis. FANS揭示了wox2相关的生长素诱导的拟南芥体细胞胚胎发生的早期调节因子。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08235-0
Anna M Wójcik, Weronika M Buchcik, Viktoriia Verezunska, Ruben Gutzat, Ortrun Mittelsten Scheid, Małgorzata D Gaj

Somatic embryogenesis (SE), the process by which differentiated somatic cells are reprogrammed to form embryos, represents a unique manifestation of plant cell totipotency. Despite its fundamental and applied importance, the molecular mechanisms that initiate embryogenic reprogramming remain largely unknown, mainly because explant tissues are cell-type heterogeneous and contain only a small fraction of SE-competent cells. Here, we applied fluorescence-activated nuclei sorting (FANS) in Arabidopsis thaliana to isolate cells expressing the WOX2 gene, a marker for early embryogenesis. Comparative transcriptomic analysis of WOX2(+)-positive and WOX2(-)-negative nuclei revealed that genes up-regulated in the embryogenic nuclei were strongly enriched in biological processes related to embryo and tissue development, while down-regulated transcripts were linked to primary metabolism, suggesting a transcriptional switch from differentiated to totipotent identity. Several transcription factor genes showed strong induction, including MYB46, ZAT14, MYB98, GRF7, MYR2, and TCP19. Functional analyses using β-estradiol-inducible overexpression and loss-of-function mutants confirmed that these genes modulate embryogenic competence. In particular, MYB46 and ZAT14 emerged as candidate regulators acting downstream of WOX2 to coordinate complementary aspects of cell wall remodeling required for cellular isolation and the acquisition of embryogenic identity. These findings reveal an early, WOX2-centered regulatory network that precedes the activation of canonical SE regulators such as LEC2 and BBM, uncovering a new transcriptional layer of totipotency control.

体细胞胚胎发生(Somatic embryogenesis, SE)是植物细胞全能性的一种独特表现,是已分化的体细胞重新编程形成胚胎的过程。尽管其基础和应用重要性,启动胚胎性重编程的分子机制在很大程度上仍然未知,主要是因为外植体组织是细胞类型异质的,并且只包含一小部分se -能态细胞。在这里,我们应用荧光激活核分选(FANS)在拟南芥中分离表达WOX2基因的细胞,WOX2基因是早期胚胎发生的标志。对比WOX2(+)阳性和WOX2(-)阴性细胞核的转录组学分析显示,胚性细胞核中上调的基因在胚胎和组织发育相关的生物学过程中富集,而下调的转录本与初级代谢有关,表明从分化到全能性的转录转换。MYB46、ZAT14、MYB98、GRF7、MYR2和TCP19等转录因子基因均表现出较强的诱导作用。利用β-雌二醇诱导的过表达和功能缺失突变体的功能分析证实,这些基因调节胚胎发生能力。特别是,MYB46和ZAT14成为WOX2下游的候选调节因子,以协调细胞分离和获得胚胎性身份所需的细胞壁重塑的互补方面。这些发现揭示了一个早期的、以wox2为中心的调控网络,它先于典型SE调控因子(如LEC2和BBM)的激活,揭示了一个新的全能性调控转录层。
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引用次数: 0
Impact of altitudinal variation on nutrient dynamics, and bioactive composition of hazelnut (Corylus avellana L.) kernel. 海拔变化对榛子仁营养动态及生物活性成分的影响
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-10 DOI: 10.1186/s12870-026-08302-6
Yakup Polat, Muhammet Ali Gündeşli, Murat Güney, Muttalip Gundogdu, Nesibe Ebru Kafkas
{"title":"Impact of altitudinal variation on nutrient dynamics, and bioactive composition of hazelnut (Corylus avellana L.) kernel.","authors":"Yakup Polat, Muhammet Ali Gündeşli, Murat Güney, Muttalip Gundogdu, Nesibe Ebru Kafkas","doi":"10.1186/s12870-026-08302-6","DOIUrl":"https://doi.org/10.1186/s12870-026-08302-6","url":null,"abstract":"","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149101","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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BMC Plant Biology
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