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Refined chloroplast annotations, repeat profiles, and phylogenomic evidence reveal maternal lineage shifts and independent evolution in the Triticum-Aegilops complex. 精细化的叶绿体注释、重复序列和系统基因组学证据揭示了母系转移和小麦- aegilops复合体的独立进化。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-15 DOI: 10.1186/s12870-025-08093-2
Suhas K Kadam, Jin-Suk Yun, Jin-Hyun Kim
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引用次数: 0
In silico characterization, evolutionary analysis, and structural modeling of HSP70 gene family in carrot (Daucus Carota L.). 胡萝卜(Daucus Carota L.) HSP70基因家族的基因表征、进化分析和结构建模。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-15 DOI: 10.1186/s12870-026-08102-y
Maria Wali, Muhammad Sufyan Durrani, Muhammad Amjid, Asif Jan, Muhammad Maroof Khan, Mequanente Dagnaw
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引用次数: 0
Asymmetric evolution of satellite DNA on homologous and homeologous chromosomes in allotetraploid Narenga porphyrocoma. 异源四倍体紫斑病同源和同源染色体上卫星DNA的不对称进化。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-14 DOI: 10.1186/s12870-025-07958-w
Shiqiang Huang, Mingxiao Zhang, Yao Yang, Jiahui Yang, Zhuo Wang, Zuhu Deng, Liangnian Xu, Yongji Huang
{"title":"Asymmetric evolution of satellite DNA on homologous and homeologous chromosomes in allotetraploid Narenga porphyrocoma.","authors":"Shiqiang Huang, Mingxiao Zhang, Yao Yang, Jiahui Yang, Zhuo Wang, Zuhu Deng, Liangnian Xu, Yongji Huang","doi":"10.1186/s12870-025-07958-w","DOIUrl":"https://doi.org/10.1186/s12870-025-07958-w","url":null,"abstract":"","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145970618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bacillus seed coating mitigates early growth reduction in successive winter wheat without altering rhizosphere bacterial and archaeal communities. 芽孢杆菌包衣在不改变根际细菌和古菌群落的情况下减轻了连作冬小麦的早期生长减少。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-14 DOI: 10.1186/s12870-026-08128-2
Nikolaos Kaloterakis, Andrea Braun-Kiewnick, Mehdi Rashtbari, Adriana Giongo, Doreen Babin, Priscilla M Zamberlan, Bahar S Razavi, Kornelia Smalla, Rüdiger Reichel, Nicolas Brüggemann

The soil legacy of successively grown winter wheat (WW) often leads to lower plant growth and yield. In this study, we assessed the effect of Bacillus pumilus seed inoculation on the early growth of successively grown WW. We conducted an outdoor experiment using newly designed temperature-regulated rhizotrons. WW was grown in soil from two rotational positions, i.e., first WW after oilseed rape (W1) and second WW after oilseed rape (W2), until the end of tillering. We measured several plant and soil biochemical parameters. In addition, amplicons of the 16S rRNA gene were sequenced to account for bacterial and archaeal community shifts in the rhizosphere, and functional genes involved in the nitrogen cycle were quantified to estimate possible changes in N cycling due to B. pumilus inoculation. B. pumilus seed coating significantly compensated for the early growth reduction of W2, and this effect was primarily linked to changes in root plasticity with a higher root length density and a smaller specific root length in inoculated W2 compared with non-inoculated W2. There was a higher LAP activity in the rhizosphere of inoculated W2 plants than in the rhizosphere of non-inoculated W2 plants and this was followed by a reduction in soil NO3-, most probably due to an enhanced plant N uptake capacity. This was also shown in the increased potassium content of the inoculated W2 plants compared with their non-inoculated counterparts. B. pumilus seed coating did not influence the bacterial and archaeal alpha and beta diversity, but differential abundance analysis identified differences in the relative abundance of certain taxa between non-inoculated and inoculated W2. While B. pumilus seed coating significantly improved root growth and nutrient uptake in W2, this was not accompanied by a higher absolute abundance of bacterial or archaeal genes involved in N-cycling. Our study suggests that certain plant-beneficial microbes can reverse the negative plant-soil feedback in successive WW rotations and provides strong evidence of B. pumilus seed coating to promote WW productivity under such rotations.

连作冬小麦的土壤遗留问题往往导致植株生长和产量下降。在本研究中,我们评估了短芽孢杆菌种子接种对连续生长的WW的早期生长的影响。我们利用新设计的温控根茎进行了室外实验。WW在土壤中按两个轮作位置种植,即油菜后第一个WW (W1)和油菜后第二个WW (W2),直到分蘖结束。我们测量了几种植物和土壤的生化参数。此外,我们对16S rRNA基因的扩增子进行了测序,以解释根际细菌和古细菌群落的变化,并对参与氮循环的功能基因进行了量化,以估计接种短柄双歧杆菌可能导致的氮循环变化。矮叶茅包衣显著补偿了W2的早期生长减少,这种影响主要与根系可塑性的变化有关,接种W2的根长密度高于未接种W2,比根长较小。接种W2的植株根际LAP活性高于未接种W2的植株根际,随后土壤NO3-减少,这很可能是由于植株吸收N的能力增强。与未接种的W2植株相比,接种W2植株的钾含量也有所增加。种子包衣对细菌和古细菌的α和β多样性没有影响,但差异丰度分析发现未接种和接种W2的某些类群的相对丰度存在差异。尽管小圆菇包衣显著改善了W2植株的根系生长和养分吸收,但这并没有伴随着参与氮循环的细菌或古细菌基因的绝对丰度增加。我们的研究表明,某些植物有益微生物可以逆转连续WW轮作中植物-土壤的负反馈,并提供了在这种轮作下矮矮的种子包衣促进WW生产力的有力证据。
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引用次数: 0
CRISPR/Cas9 editing of β-Conglycinin subunits reduces IgE binding in soybean [Glycine max (L.) Merr.]. CRISPR/Cas9编辑β-Conglycinin亚基降低大豆IgE结合[Glycine max (L.)]稳定)。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-14 DOI: 10.1186/s12870-026-08130-8
Hye Rang Park, Sewon Park, Joo-Mi Jun, Yoon Ji Shin, Yeojin Hwang, Kyoung Yong Jeong, Min Young Kim, Sun Tae Kim, Sangjun Park, Yo-Han H Yoo, Eunsoo Lee, Girim Park, Sang-Gyu Kim, Soo-Kwon Park
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引用次数: 0
Effects of stocking rate on the state transition processes of plant community in desert steppe. 载畜率对荒漠草原植物群落状态转换过程的影响
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-14 DOI: 10.1186/s12870-025-08048-7
Shijie Lv, Zihan Wang, Hui Zhang, Fan Zhang, Hongmei Liu, Ruiting Jia, Xing Li, Liying Liu, Yiwen Yang, Hui Yan

Background: To investigate the state transition processes of plant community in desert steppe under different stocking rates, this study aims to systematically uncover the intrinsic characteristics of such transition processes and their underlying network-driven mechanisms across three hierarchical levels (i.e., species, functional group, and plant family). The findings are expected to provide a robust scientific basis for optimizing adaptive grassland management strategies and facilitating the restoration of degraded desert steppe ecosystems.

Methods: The study was conducted in Stipa breviflora desert steppe. Four grazing treatments were established: control (CK, no grazing), light grazing (LG), moderate grazing (MG), and heavy grazing (HG), with stocking rates of 0, 0.91, 1.82, and 2.71 sheep units·hm⁻²·half year⁻¹, respectively. Plant population height, coverage, and density were surveyed, and importance values were calculated. Based on species composition proportion and resource allocation proportion matrices, a Bray-Curtis state transition model was constructed.

Results: The CK treatment exhibited the highest community self-stability. Species composition stability increased with increasing stocking rates (across the LG-HG gradient), while resource allocation stability decreased with increasing stocking rates below MG (CK > LG > MG). Grazing disturbance made grassland degradation easier than recovery. Restoring degraded grasslands requires a stepwise reduction grazing strategy: "from HG to MG to LG". State transitions across stocking rates occurred at multiple levels. Population proportion similarity showed bipolar differentiation, while resource dependence on grazing conditions exhibited a three-dimensional response. Perennial grasses (PG) showed significant resource output tendencies, perennial forbs (PF) acted as the core receiving center, and shrubs/semi-shrubs (SS) and annual/biennial plants (AB) served as intermediaries. Poaceae (POA) dominated resource output, while Asteraceae (AST) and Chenopodiaceae (CHE) functioned as key transfer hubs.

Conclusion: In summary, multiple stable states formed by grazing in desert steppe. The differentiation in species response strategies and reallocation among functional groups/families are the core mechanisms driving state transitions. For degraded grasslands, promoting recovery through stepwise reduce stocking rate is superior to fencing exclusion.

背景:研究不同载畜率下荒漠草原植物群落的状态转换过程,系统揭示荒漠草原植物群落状态转换过程的内在特征及其网络驱动机制,包括物种、功能群和植物科三个层次。研究结果将为优化适应性草原管理策略和促进退化荒漠草原生态系统的恢复提供有力的科学依据。方法:以短花针茅荒漠草原为研究对象。建立了对照(CK,不放牧)、轻度放牧(LG)、中度放牧(MG)和重度放牧(HG) 4种放牧处理,放养率分别为0、0.91、1.82和2.71羊单位·hm⁻²·半年⁻¹。调查植物种群高度、盖度和密度,计算重要值。基于物种组成比例和资源分配比例矩阵,构建了Bray-Curtis状态转移模型。结果:CK处理表现出最高的群落自稳定性。在MG (CK > LG > MG)以下,物种组成稳定性随载畜率的增加而增加,资源分配稳定性随载畜率的增加而降低。放牧干扰使草地退化比恢复更容易。恢复退化草原需要逐步减少放牧策略:“从HG到MG再到LG”。载畜率的状态转变发生在多个水平上。种群比例相似度表现为两极分化,资源依赖度对放牧条件表现为三维响应。多年生草本植物(PG)具有显著的资源输出趋势,多年生草本植物(PF)是核心接收中心,灌木/半灌木(SS)和一年生/二年生植物(AB)是中介。禾科植物(POA)在资源输出中占主导地位,而Asteraceae (AST)和Chenopodiaceae (CHE)则是资源输出的重要枢纽。结论:综上所述,荒漠草原放牧形成了多种稳定状态。物种响应策略的差异和功能群/科之间的再分配是驱动状态转变的核心机制。对于退化草地,通过逐步降低载畜率来促进恢复优于围栏隔离。
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引用次数: 0
Assessment of suitable cultivation area for Paris polyphylla var. chinensis and var. yunnanensis under anthropogenic disturbance based on ensemble modeling and germplasm identification. 基于集合模型和种质鉴定的人为干扰下云南巴黎树和中国巴黎树适宜种植面积评价
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-14 DOI: 10.1186/s12870-025-08010-7
Yiheng Wang, Hangxiu Liu, Dan Zhao, Sheng Wang, Jingyi Wang, Xiulian Chi, Chengcai Zhang, Tielin Wang, Chaogeng Lyu, Chuanzhi Kang, Jiahui Sun, Lanping Guo, Luqi Huang
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引用次数: 0
Scots pine seedlings of lowland and upland ecotypes respond differently to drought detected by needle functional traits and spectral reflectance. 利用针叶功能性状和光谱反射率测定了低地和高地生态型苏格兰松幼苗对干旱的响应。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-14 DOI: 10.1186/s12870-025-08019-y
Kristýna Štěpánová, Zuzana Lhotáková, Eva Neuwirthová, Lucie Kupková, Lucie Červená, Filip Raasch, Markéta Potůčková, Jan Stejskal, Jaroslav Čepl, Petya Campbell, Milan Lstibůrek, Jana Albrechtová

Scots pine (Pinus sylvestris L.) is widely distributed, phenotypically plastic forest tree species with modest ecological demands, therefore it is a very suitable, drought tolerant species for afforestation at present. This is especially important given Europe's changing climate, with rising extremes and unpredictable rainfall challenging forest regeneration. Drought resistance of seedlings is essential for their survival during current reforestation efforts, however, its relation to ecotypic variation is yet not well understood. The objective of this study was to investigate the response of seedlings from two Czech Scots pine ecotypes (upland and lowland), exposed to water deficit at the beginning of the vegetative season - a critical period for successful afforestation from the perspective of precipitation availability. During a greenhouse experiment with nursery pre-grown seedlings, terminal shoot length and selected leaf functional traits (leaf mass per area; water and pigment contents; needle anatomy), chlorophyll fluorescence kinetics and seedling reflectance were monitored during ten-week irrigation reduction and after rewatering. The photochemical reflectance index (PRI) and the red edge position (REP) were calculated from spectral reflectance to distinguish differently treated seedlings. The lowland ecotype grew faster under control but suffered stronger growth reduction and higher mortality under drought. In contrast, across all recorded responses, the upland ecotype responds more consistently to changes in water availability, does not reduce terminal growth, accumulates less biomass and exhibits lower mortality. In general, for terminal growth, there was a significant effect of treatment and also an interaction of treatment and ecotype during the recovery period, unlike the drought period. REP was responsive in recovery period for upland ecotype while PRI showed no consistent drought-related pattern. Our results, in agreement with the fluorescence-based indicators, suggest that current-year needles are more suitable for drought stress detection using spectral indices. The upland ecotype showed several functional traits corresponding to better resilience to drought stress compared to the lowland ecotype. Understanding drought stress and recovery responses via effective leaf functional traits will help forest management to select suitable ecotypes for reforestation, ensuring a higher survival under changing climatic conditions.

苏格兰松(Pinus sylvestris L.)是一种分布广泛、表型可塑性强、生态需求适中的森林树种,是目前十分适宜的耐旱造林树种。考虑到欧洲不断变化的气候,这一点尤其重要,极端天气的增加和不可预测的降雨对森林再生构成了挑战。幼苗的抗旱性对其在当前造林工作中的生存至关重要,但其与生态型变异的关系尚不清楚。本研究的目的是研究两种捷克苏格兰松生态型(高地和低地)幼苗在营养季节开始时(从降水可得性的角度来看,这是成功造林的关键时期)暴露于水分亏缺的反应。在温室试验中,以苗圃预苗为材料,在减少灌溉10周和复水后,监测了顶芽长度和部分叶片功能性状(单位面积叶质量、水分和色素含量、针叶解剖)、叶绿素荧光动力学和幼苗反射率。利用光谱反射率计算光化学反射率指数(PRI)和红边位置(REP)来区分不同处理的幼苗。在控制下,低地生态型生长较快,但在干旱条件下,其生长衰减更大,死亡率更高。相比之下,在所有记录的响应中,旱地生态型对水分供应变化的响应更一致,不减少终末生长,积累的生物量更少,死亡率更低。总体而言,与干旱期不同,在恢复期,处理和生态型对终端生长有显著的影响,并且存在交互作用。旱地生态型恢复期REP有响应,旱地生态型PRI无一致的干旱相关模式。我们的结果与基于荧光的指标一致,表明当年针更适合使用光谱指标进行干旱胁迫检测。与低地生态型相比,旱地生态型具有较好的抗旱能力。通过有效的叶片功能特征了解干旱胁迫和恢复反应,有助于森林管理者选择适宜的生态类型进行再造林,确保在气候条件变化下的更高存活率。
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引用次数: 0
Integrated transcriptomic and metabolomic analyses reveal the ABC transporter-related genes and metabolites involved in seed aging of Platostoma palustre (Blume) A. J. Paton. 综合转录组学和代谢组学分析揭示了ABC转运蛋白相关基因和代谢物参与Platostoma palustre (Blume) A. J. Paton种子老化。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-14 DOI: 10.1186/s12870-025-07967-9
Danfeng Tang, Jingchun Li, Changqian Quan, Meihua Xu, Fan Wei

Platostoma palustre (Blume) A. J. Paton (or Mesona chinensis Benth.), a traditional medicinal and edible plant in China, possesses significant economic and market potential. To investigate the underlying mechanism of seed aging in P. palustre, we utilized artificial aging technology to induce seed aging and assessed seed viability. Furthermore, we employed transcriptome and metabolome sequencing technologies to analyze gene expression and metabolic alterations in artificially aged seeds. The results showed that the germination rate, germination potential, and germination index of the P. palustre seeds decreased significantly after the aging treatment. Transcriptome analysis identified 2,127 differentially expressed genes (DEGs), consisting of 1,623 up-regulated and 504 down-regulated genes. Metabolomic analyses uncovered that a total of 1,919 metabolites were identified under positive ion mode (957) and negative ion mode (962). In total, 747 differentially expressed metabolites (DEMs) were identified, including 362 up-regulated and 385 down-regulated metabolites. An integrative analysis of transcriptome and metabolome indicated that only one pathway (ABC transporters) was significantly enriched in both DEMs and DEGs, and this pathway included 9 DEMs (Deoxyuridine, L-Glutamine, Sparfloxacin, L-Threonine, L-Histidine, Uridine, Guanosine, Ciprofloxacin, and D-Sorbitol) and 6 DEGs (Mesona_chinensis0082240.1, Mesona_chinensis0452530.1, Mesona_chinensis0457550.1, Mesona_chinensis0440370.1, Mesona_chinensis0324680.1, and Mesona_chinensis0233350.1). Further network analyses showed correlations between the 5 DEGs (except for Mesona_chinensis0324680.1) and 9 DEMs. It was inferred that the ABC transporters pathway and its related genes and metabolites might play an important role in seed aging in P. palustre. The current study laid the foundation for an in-depth investigation of the aging mechanism and safe storage of P. palustre seeds.

Platostoma palustre (Blume) a . J. Paton(或Mesona chinensis Benth.)是中国传统的药用和食用植物,具有重要的经济和市场潜力。为探讨黄颡鱼种子老化机理,采用人工老化技术诱导黄颡鱼种子老化,并对黄颡鱼种子活力进行评价。此外,我们利用转录组和代谢组测序技术分析了人工老化种子的基因表达和代谢变化。结果表明,陈化处理后,黄杨种子的发芽率、萌发势和萌发指数均显著降低。转录组分析鉴定出2127个差异表达基因(DEGs),其中上调1623个,下调504个。代谢组学分析发现,在正离子模式(957)和负离子模式(962)下,共鉴定出1,919种代谢物。共鉴定出747种差异表达代谢物(dem),其中上调代谢物362种,下调代谢物385种。转录组学和代谢组学综合分析表明,只有一条通路(ABC转运蛋白)在dem和deg中均显著富集,该通路包括9条dem(脱氧尿苷、l -谷氨酰胺、斯帕沙星、l -苏氨酸、l -组氨酸、尿苷、鸟苷、环丙沙星和d -山梨醇)和6条deg (Mesona_chinensis0082240.1、Mesona_chinensis0452530.1、Mesona_chinensis0457550.1、Mesona_chinensis0440370.1、Mesona_chinensis0324680.1和Mesona_chinensis0233350.1)。进一步的网络分析表明,5个deg (Mesona_chinensis0324680.1除外)与9个dem之间存在相关性。由此推测,ABC转运蛋白通路及其相关基因和代谢物可能在帕鲁斯特种子老化过程中起重要作用。本研究为深入研究白栎种子的老化机理和安全贮藏奠定了基础。
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引用次数: 0
Excavation and effect analysis of interaction sites between upland cotton yield and fiber quality traits and environmental factors. 陆地棉产量和纤维品质性状与环境因子互作位点的挖掘及效应分析。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-14 DOI: 10.1186/s12870-026-08123-7
Shuqian Yao, Juwu Gong, Wankui Gong, Yang Li, Jingtao Pan, Yuzhen Shi, Youlu Yuan, Haoliang Yan, Haihong Shang
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引用次数: 0
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BMC Plant Biology
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