Cotton (Gossypium hirsutum L.) is a globally important cash crop. Cytoplasmic male sterility (CMS) is a key biological tool for hybrid seed production. However, a systematic, stage-specific proteomic profile of CMS anther development in cotton remains lacking. To address this, we employed, for the first time in cotton CMS research, a high-resolution quantitative proteomic approach using data-independent acquisition mass spectrometry (DIA-MS) to compare the CMS line C2P5A and its maintainer line C2P5B across three critical anther developmental stages: pollen mother cell (Pms), tetrad stage (Tds), and mononuclear stage (Ms). A total of 498 significantly differentially expressed proteins (DEPs) were identified, with 194 upregulated and 304 downregulated. Bioinformatic analysis revealed that these DEPs are significantly enriched in key metabolic pathways essential for anther development, including glycolysis/gluconeogenesis, pyruvate metabolism, the tricarboxylic acid (TCA) cycle, starch and sucrose metabolism, and fatty acid degradation. Notably, we identified 12 aldehyde dehydrogenases (ALDHs) and several cytochrome P450 proteins associated with reactive oxygen species (ROS) homeostasis and pollen wall formation. This study presents a systematic, stage-resolved proteomic atlas of CMS in cotton using DIA-MS, which reveals that widespread dysregulation of central energy and secondary metabolite pathways underpins the sterility phenotype. Our integrated multi-omics and functional validation approach provides novel molecular insights into CMS mechanisms and pinpoints potential targets for hybrid breeding.
{"title":"Identification of metabolic pathways associated with cytoplasmic male sterility in cotton (Gossypium hirsutum L.) using Data-Independent Acquisition-based proteomic profiling.","authors":"Yuqing Li, Tengfei Qin, Xiuren Zhou, Peipei Zhang, Yuqing Zhu, Wenqing Jin, Chew Tin Lee, Guanyin Zhou, Ruiyang Zhou, Qinglian Wang","doi":"10.1186/s12870-026-08263-w","DOIUrl":"https://doi.org/10.1186/s12870-026-08263-w","url":null,"abstract":"<p><p>Cotton (Gossypium hirsutum L.) is a globally important cash crop. Cytoplasmic male sterility (CMS) is a key biological tool for hybrid seed production. However, a systematic, stage-specific proteomic profile of CMS anther development in cotton remains lacking. To address this, we employed, for the first time in cotton CMS research, a high-resolution quantitative proteomic approach using data-independent acquisition mass spectrometry (DIA-MS) to compare the CMS line C2P5A and its maintainer line C2P5B across three critical anther developmental stages: pollen mother cell (Pms), tetrad stage (Tds), and mononuclear stage (Ms). A total of 498 significantly differentially expressed proteins (DEPs) were identified, with 194 upregulated and 304 downregulated. Bioinformatic analysis revealed that these DEPs are significantly enriched in key metabolic pathways essential for anther development, including glycolysis/gluconeogenesis, pyruvate metabolism, the tricarboxylic acid (TCA) cycle, starch and sucrose metabolism, and fatty acid degradation. Notably, we identified 12 aldehyde dehydrogenases (ALDHs) and several cytochrome P450 proteins associated with reactive oxygen species (ROS) homeostasis and pollen wall formation. This study presents a systematic, stage-resolved proteomic atlas of CMS in cotton using DIA-MS, which reveals that widespread dysregulation of central energy and secondary metabolite pathways underpins the sterility phenotype. Our integrated multi-omics and functional validation approach provides novel molecular insights into CMS mechanisms and pinpoints potential targets for hybrid breeding.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146164111","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Achieving higher productivity and long-term sustainability in millet-based systems requires precision nutrient management that considers soil variability, crop demand, and soil health. Barnyard millet (Echinochloa frumentacea), a climate-resilient, short-duration, and nutrient-rich crop, is commonly cultivated under low-input conditions but has considerable potential when grown under balanced fertilization. The study aimed to develop and validate Soil Test Crop Response (STCR)-based fertilizer prescription equations for barnyard millet, enabling precise NPK management with and without farmyard manure (FYM), and to compare their performance with conventional recommendation methods. A three-year field program (2022-2024) was conducted on Alfisols at the Zonal Agricultural Research Station, UAS Bangalore, involving fertility gradient establishment, test crop trials, and validation experiments.
Results: Key parameters including nutrient requirement, soil contribution, fertilizer efficiency, and FYM contribution coefficients were derived to formulate STCR equations for targeted grain yields. Treatments compared STCR-NPK, STCR NPK + FYM, general recommended dose, soil fertility rating approach, and absolute control. Results indicated that STCR-based prescriptions achieved the targeted yield within ± 10% variation. Integrated application of NPK and FYM under the STCR approach recorded the highest grain yield (28.1 q ha⁻1), with N, P and K agronomic efficiency reaching about 37-49, 62-64 and 93-107 kg grain kg⁻1 nutrient applied, respectively, and recovery efficiency improving to about 1.35-1.65, 0.66-0.76 and 3.14-3.14 kg kg⁻1, thereby surpassing conventional recommendation methods. Although the value-cost ratio decreased slightly due to FYM cost, soil fertility, nutrient balance, and long-term system resilience improved. Nitrogen had the greatest impact on yield increase, but balanced NPK combined with FYM ensured superior productivity and nutrient-use efficiency.
Conclusions: The STCR approach with FYM integration enhances soil fertility, nutrient-use efficiency (higher RE and PFP for NPK vs. GRD/soil rating), and system resilience while achieving targeted yields within ± 10%. This provides a viable pathway for sustainable millet intensification across agroecological conditions.
背景:在以小米为基础的系统中实现更高的生产力和长期可持续性需要精确的养分管理,考虑土壤变异性、作物需求和土壤健康。谷子(Echinochloa frumentacea)是一种气候适应性强、生育期短、营养丰富的作物,通常在低投入条件下种植,但在平衡施肥条件下种植具有相当大的潜力。本研究旨在建立和验证基于土壤试验作物响应(STCR)的谷子肥料配方方程,实现有和无农家肥的氮磷钾精确管理,并将其与传统推荐方法的性能进行比较。在UAS班加罗尔区域农业研究站对Alfisols进行了为期三年的田间项目(2022-2024),包括肥力梯度建立、试验作物试验和验证实验。结果:导出养分需要量、土壤贡献率、肥效和FYM贡献系数等关键参数,建立目标粮食产量STCR方程。比较了STCR-NPK、STCR NPK + FYM、一般推荐剂量、土壤肥力分级法和绝对控制。结果表明,基于stcr的处方在±10%的变化范围内达到了目标收率。在STCR方法下,NPK和FYM的综合应用取得了最高的粮食产量(28.1 q ha -1), N, P和K的农艺效率分别达到37-49,62-64和93-107 kg,恢复效率提高到1.35-1.65,0.66-0.76和3.14-3.14 kg kg -⁻1,超过了传统的推荐方法。虽然由于FYM成本的影响,价值成本比略有下降,但土壤肥力、养分平衡和长期系统弹性得到改善。氮肥对增产的影响最大,但氮磷钾配化肥能保证高产和养分利用效率。结论:与FYM相结合的STCR方法提高了土壤肥力、养分利用效率(NPK的RE和PFP高于GRD/土壤等级)和系统弹性,同时实现了±10%的目标产量。这为跨越农业生态条件的谷子可持续集约化提供了一条可行途径。
{"title":"Visualizing nutrient synergies: STCR approach towards NPK balancing and yield targeting in barnyard millet.","authors":"Krishna Murthy Rangaiah, Govinda Kasturappa, Bhavya Nagaraju, Shivakumara Maragondanadibba Nanjundappa, Uday Kumar Sugaturu Narayanaswamy, Sanjay Srivastava, Immanuel Chongboi Haokip, Pradip Dey","doi":"10.1186/s12870-025-08073-6","DOIUrl":"https://doi.org/10.1186/s12870-025-08073-6","url":null,"abstract":"<p><strong>Background: </strong>Achieving higher productivity and long-term sustainability in millet-based systems requires precision nutrient management that considers soil variability, crop demand, and soil health. Barnyard millet (Echinochloa frumentacea), a climate-resilient, short-duration, and nutrient-rich crop, is commonly cultivated under low-input conditions but has considerable potential when grown under balanced fertilization. The study aimed to develop and validate Soil Test Crop Response (STCR)-based fertilizer prescription equations for barnyard millet, enabling precise NPK management with and without farmyard manure (FYM), and to compare their performance with conventional recommendation methods. A three-year field program (2022-2024) was conducted on Alfisols at the Zonal Agricultural Research Station, UAS Bangalore, involving fertility gradient establishment, test crop trials, and validation experiments.</p><p><strong>Results: </strong>Key parameters including nutrient requirement, soil contribution, fertilizer efficiency, and FYM contribution coefficients were derived to formulate STCR equations for targeted grain yields. Treatments compared STCR-NPK, STCR NPK + FYM, general recommended dose, soil fertility rating approach, and absolute control. Results indicated that STCR-based prescriptions achieved the targeted yield within ± 10% variation. Integrated application of NPK and FYM under the STCR approach recorded the highest grain yield (28.1 q ha⁻<sup>1</sup>), with N, P and K agronomic efficiency reaching about 37-49, 62-64 and 93-107 kg grain kg⁻<sup>1</sup> nutrient applied, respectively, and recovery efficiency improving to about 1.35-1.65, 0.66-0.76 and 3.14-3.14 kg kg⁻<sup>1</sup>, thereby surpassing conventional recommendation methods. Although the value-cost ratio decreased slightly due to FYM cost, soil fertility, nutrient balance, and long-term system resilience improved. Nitrogen had the greatest impact on yield increase, but balanced NPK combined with FYM ensured superior productivity and nutrient-use efficiency.</p><p><strong>Conclusions: </strong>The STCR approach with FYM integration enhances soil fertility, nutrient-use efficiency (higher RE and PFP for NPK vs. GRD/soil rating), and system resilience while achieving targeted yields within ± 10%. This provides a viable pathway for sustainable millet intensification across agroecological conditions.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146156223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: The regreening stage (RS) is a critical agronomic trait impacting yield potential in rapeseed (Brassica rapa L.), yet its underlying genetic mechanisms remain largely unexplored. Field observations indicate that early-regreening cultivars, like 'Hengyou 8', exhibit a longer grain-filling period and higher thousand-seed weight (TSW) compared to late-regreening cultivars like 'Hengyou 6'. This study aimed to systematically dissect the genetic basis of RS initiation to identify key regulatory genes and provide resources for molecular breeding.
Results: We constructed an F₂ population from a cross between 'Hengyou 8' and 'Hengyou 6' and employed Bulk Segregant Analysis sequencing (BSA-seq), which identified 11 quantitative trait loci (QTLs) associated with RS on chromosomes A01, A02, A04, A05, A06, A08, A09, and A10. Concurrently, transcriptome sequencing (RNA-seq) of shoot apical meristems and roots across the RS process revealed 17,242 differentially expressed genes (DEGs). Integrated analysis of BSA-seq and RNA-seq data pinpointed 15 high-confidence candidate genes within the QTL regions. These include NAC016, NAC017, MYC2, and DDE2, which are primarily involved in jasmonic acid (JA) metabolism, phytohormone signaling, cell development, and stress responses. Expression profiling showed distinct spatiotemporal patterns for these genes between the parental lines, suggesting their roles in modulating the timing of regreening.
Conclusions: Our findings provide the first comprehensive genetic map of the regreening process in rapeseed, revealing a dynamic regulatory network centered on JA signaling and stress response pathways. The identified candidate genes and associated molecular markers establish a valuable resource and a solid theoretical foundation for future functional studies. More importantly, we have identified direct targets for marker-assisted selection (MAS). This provides a foundation for breeding novel rapeseed cultivars with optimized regreening timing and enhanced yield potential.
{"title":"Identification of candidate genes associated with regreening stage in rapeseed (Brassica Rapa L.) by combined application of BSA-Seq and RNA-Seq.","authors":"Mingwei Guan, Anqiang Guo, Heping Li, Lanju Zhai, Jiming Li, Aiguo Li","doi":"10.1186/s12870-026-08345-9","DOIUrl":"https://doi.org/10.1186/s12870-026-08345-9","url":null,"abstract":"<p><strong>Background: </strong>The regreening stage (RS) is a critical agronomic trait impacting yield potential in rapeseed (Brassica rapa L.), yet its underlying genetic mechanisms remain largely unexplored. Field observations indicate that early-regreening cultivars, like 'Hengyou 8', exhibit a longer grain-filling period and higher thousand-seed weight (TSW) compared to late-regreening cultivars like 'Hengyou 6'. This study aimed to systematically dissect the genetic basis of RS initiation to identify key regulatory genes and provide resources for molecular breeding.</p><p><strong>Results: </strong>We constructed an F₂ population from a cross between 'Hengyou 8' and 'Hengyou 6' and employed Bulk Segregant Analysis sequencing (BSA-seq), which identified 11 quantitative trait loci (QTLs) associated with RS on chromosomes A01, A02, A04, A05, A06, A08, A09, and A10. Concurrently, transcriptome sequencing (RNA-seq) of shoot apical meristems and roots across the RS process revealed 17,242 differentially expressed genes (DEGs). Integrated analysis of BSA-seq and RNA-seq data pinpointed 15 high-confidence candidate genes within the QTL regions. These include NAC016, NAC017, MYC2, and DDE2, which are primarily involved in jasmonic acid (JA) metabolism, phytohormone signaling, cell development, and stress responses. Expression profiling showed distinct spatiotemporal patterns for these genes between the parental lines, suggesting their roles in modulating the timing of regreening.</p><p><strong>Conclusions: </strong>Our findings provide the first comprehensive genetic map of the regreening process in rapeseed, revealing a dynamic regulatory network centered on JA signaling and stress response pathways. The identified candidate genes and associated molecular markers establish a valuable resource and a solid theoretical foundation for future functional studies. More importantly, we have identified direct targets for marker-assisted selection (MAS). This provides a foundation for breeding novel rapeseed cultivars with optimized regreening timing and enhanced yield potential.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Seed endophytic bacteria are involved in metal adaptation of Orobanche lutea: community dynamics and plant growth promotion traits.","authors":"Kristine Petrosyan, Sofie Thijs, Tomasz Krucon, Renata Piwowarczyk, Karolina Wiśniewska, Wiesław Kaca, Jaco Vangronsveld","doi":"10.1186/s12870-026-08304-4","DOIUrl":"https://doi.org/10.1186/s12870-026-08304-4","url":null,"abstract":"","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10DOI: 10.1186/s12870-026-08292-5
Ayşe Yeşilayer, Erhan Gülsoy
The extensive reliance on synthetic pesticides has led to considerable ecological disruption and negative impacts on non-target organisms worldwide. As a sustainable alternative, nanotechnology offers promising avenues for the development of innovative and environmentally safe biopesticides. In this study, the insecticidal efficacy of ethanol and silver nanoparticles (AgNPs) extracts derived from Lantana camara L. was evaluated against the eggs and larvae of the Potato Tuber Moth (Phthorimaea operculella [Zeller, 1873]), a quarantine pest of major concern in potato production in Türkiye. Toxicological assessments revealed dose-dependent larvae mortality, with LC₅₀-LC₉₀ values ranging from 6.49-51.45 ppm for ethanol extracts and 1.47-5.88 ppm for AgNPs formulations. Maximum inhibition of egg hatching was observed at 12% ethanol extract (86.51%) and 200 ppm AgNPs treatment (94.95%). Bioassay results demonstrated that AgNPs formulations of L. camara were significantly more effective than ethanol extracts in suppressing both larval and egg development. Moreover, potato tubers treated with AgNPs exhibited a pronounced reduction in adult moth emergence compared to untreated controls. Collectively, these findings highlight the potential of L. camara nano-silver extracts as a sustainable biopesticide candidate for integrated management of P. operculella.
{"title":"Insecticidal potential of Lantana camara L. ethanol and nano-silver extracts against the potato tuber moth (Phthorimaea operculella [Zeller]).","authors":"Ayşe Yeşilayer, Erhan Gülsoy","doi":"10.1186/s12870-026-08292-5","DOIUrl":"https://doi.org/10.1186/s12870-026-08292-5","url":null,"abstract":"<p><p>The extensive reliance on synthetic pesticides has led to considerable ecological disruption and negative impacts on non-target organisms worldwide. As a sustainable alternative, nanotechnology offers promising avenues for the development of innovative and environmentally safe biopesticides. In this study, the insecticidal efficacy of ethanol and silver nanoparticles (AgNPs) extracts derived from Lantana camara L. was evaluated against the eggs and larvae of the Potato Tuber Moth (Phthorimaea operculella [Zeller, 1873]), a quarantine pest of major concern in potato production in Türkiye. Toxicological assessments revealed dose-dependent larvae mortality, with LC₅₀-LC₉₀ values ranging from 6.49-51.45 ppm for ethanol extracts and 1.47-5.88 ppm for AgNPs formulations. Maximum inhibition of egg hatching was observed at 12% ethanol extract (86.51%) and 200 ppm AgNPs treatment (94.95%). Bioassay results demonstrated that AgNPs formulations of L. camara were significantly more effective than ethanol extracts in suppressing both larval and egg development. Moreover, potato tubers treated with AgNPs exhibited a pronounced reduction in adult moth emergence compared to untreated controls. Collectively, these findings highlight the potential of L. camara nano-silver extracts as a sustainable biopesticide candidate for integrated management of P. operculella.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146156136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}