Background: The regreening stage (RS) is a critical agronomic trait impacting yield potential in rapeseed (Brassica rapa L.), yet its underlying genetic mechanisms remain largely unexplored. Field observations indicate that early-regreening cultivars, like 'Hengyou 8', exhibit a longer grain-filling period and higher thousand-seed weight (TSW) compared to late-regreening cultivars like 'Hengyou 6'. This study aimed to systematically dissect the genetic basis of RS initiation to identify key regulatory genes and provide resources for molecular breeding.
Results: We constructed an F₂ population from a cross between 'Hengyou 8' and 'Hengyou 6' and employed Bulk Segregant Analysis sequencing (BSA-seq), which identified 11 quantitative trait loci (QTLs) associated with RS on chromosomes A01, A02, A04, A05, A06, A08, A09, and A10. Concurrently, transcriptome sequencing (RNA-seq) of shoot apical meristems and roots across the RS process revealed 17,242 differentially expressed genes (DEGs). Integrated analysis of BSA-seq and RNA-seq data pinpointed 15 high-confidence candidate genes within the QTL regions. These include NAC016, NAC017, MYC2, and DDE2, which are primarily involved in jasmonic acid (JA) metabolism, phytohormone signaling, cell development, and stress responses. Expression profiling showed distinct spatiotemporal patterns for these genes between the parental lines, suggesting their roles in modulating the timing of regreening.
Conclusions: Our findings provide the first comprehensive genetic map of the regreening process in rapeseed, revealing a dynamic regulatory network centered on JA signaling and stress response pathways. The identified candidate genes and associated molecular markers establish a valuable resource and a solid theoretical foundation for future functional studies. More importantly, we have identified direct targets for marker-assisted selection (MAS). This provides a foundation for breeding novel rapeseed cultivars with optimized regreening timing and enhanced yield potential.
{"title":"Identification of candidate genes associated with regreening stage in rapeseed (Brassica Rapa L.) by combined application of BSA-Seq and RNA-Seq.","authors":"Mingwei Guan, Anqiang Guo, Heping Li, Lanju Zhai, Jiming Li, Aiguo Li","doi":"10.1186/s12870-026-08345-9","DOIUrl":"https://doi.org/10.1186/s12870-026-08345-9","url":null,"abstract":"<p><strong>Background: </strong>The regreening stage (RS) is a critical agronomic trait impacting yield potential in rapeseed (Brassica rapa L.), yet its underlying genetic mechanisms remain largely unexplored. Field observations indicate that early-regreening cultivars, like 'Hengyou 8', exhibit a longer grain-filling period and higher thousand-seed weight (TSW) compared to late-regreening cultivars like 'Hengyou 6'. This study aimed to systematically dissect the genetic basis of RS initiation to identify key regulatory genes and provide resources for molecular breeding.</p><p><strong>Results: </strong>We constructed an F₂ population from a cross between 'Hengyou 8' and 'Hengyou 6' and employed Bulk Segregant Analysis sequencing (BSA-seq), which identified 11 quantitative trait loci (QTLs) associated with RS on chromosomes A01, A02, A04, A05, A06, A08, A09, and A10. Concurrently, transcriptome sequencing (RNA-seq) of shoot apical meristems and roots across the RS process revealed 17,242 differentially expressed genes (DEGs). Integrated analysis of BSA-seq and RNA-seq data pinpointed 15 high-confidence candidate genes within the QTL regions. These include NAC016, NAC017, MYC2, and DDE2, which are primarily involved in jasmonic acid (JA) metabolism, phytohormone signaling, cell development, and stress responses. Expression profiling showed distinct spatiotemporal patterns for these genes between the parental lines, suggesting their roles in modulating the timing of regreening.</p><p><strong>Conclusions: </strong>Our findings provide the first comprehensive genetic map of the regreening process in rapeseed, revealing a dynamic regulatory network centered on JA signaling and stress response pathways. The identified candidate genes and associated molecular markers establish a valuable resource and a solid theoretical foundation for future functional studies. More importantly, we have identified direct targets for marker-assisted selection (MAS). This provides a foundation for breeding novel rapeseed cultivars with optimized regreening timing and enhanced yield potential.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Seed endophytic bacteria are involved in metal adaptation of Orobanche lutea: community dynamics and plant growth promotion traits.","authors":"Kristine Petrosyan, Sofie Thijs, Tomasz Krucon, Renata Piwowarczyk, Karolina Wiśniewska, Wiesław Kaca, Jaco Vangronsveld","doi":"10.1186/s12870-026-08304-4","DOIUrl":"https://doi.org/10.1186/s12870-026-08304-4","url":null,"abstract":"","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10DOI: 10.1186/s12870-026-08302-6
Yakup Polat, Muhammet Ali Gündeşli, Murat Güney, Muttalip Gundogdu, Nesibe Ebru Kafkas
{"title":"Impact of altitudinal variation on nutrient dynamics, and bioactive composition of hazelnut (Corylus avellana L.) kernel.","authors":"Yakup Polat, Muhammet Ali Gündeşli, Murat Güney, Muttalip Gundogdu, Nesibe Ebru Kafkas","doi":"10.1186/s12870-026-08302-6","DOIUrl":"https://doi.org/10.1186/s12870-026-08302-6","url":null,"abstract":"","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149101","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-09DOI: 10.1186/s12870-026-08315-1
Songtao Liu, Yan Wang, Xinwei Wang, Xiaonuo Zhang, Yanmin Li, Yangjie Chen, Jie Yang, Lu Liu, Xiaoting Zhai
Drought is one of the major abiotic stress factors limiting the growth, development, and yield of potato (Solanum tuberosum L.). Melatonin, a novel plant hormone, has recently shown significant potential in enhancing plant stress resistance. However, its regulatory mechanisms in response to drought stress in potato remain unclear. In this study, potato seedlings were treated with different concentrations of exogenous melatonin (50, 100, and 150 µmol L⁻¹) under controlled drought conditions to systematically evaluate their physiological and molecular responses. The results demonstrated that appropriate melatonin application, especially at 100 µmol L⁻¹ effectively alleviated drought-induced growth inhibition, oxidative stress, and photosynthetic impairment. This was evidenced by increased plant height, enhanced photosynthetic efficiency, reduced reactive oxygen species (ROS) accumulation, decreased cell death and lipid peroxidation, as well as elevated antioxidant enzyme activities (superoxide dismutase - SOD, catalase - CAT, peroxidase - POD) and levels of osmoprotectants (proline - Pro and soluble sugars - SS). Transcriptome analysis revealed that melatonin modulates numerous drought-responsive differentially expressed genes (DEGs), including multiple transcription factor (TF) families (e.g., MYB, NAC, ERF), and pathways related to photosynthesis, antioxidative metabolism, hormone signaling, and carbon metabolism. Furthermore, weighted gene co-expression network analysis (WGCNA) and Mfuzz clustering identified key gene modules and central hub genes strongly associated with photosynthetic performance and antioxidant indicators. Overexpression of StMYB and StAPX in Arabidopsis significantly enhanced drought tolerance by improving antioxidant enzyme activities and maintaining membrane stability under water-deficit conditions. This study provides a theoretical foundation for applying melatonin in potato drought stress mitigation and lays a molecular basis for developing melatonin-based agronomic strategies for improving drought tolerance.
干旱是制约马铃薯生长发育和产量的主要非生物胁迫因子之一。褪黑素是一种新的植物激素,近年来在增强植物抗逆性方面显示出巨大的潜力。然而,其对马铃薯干旱胁迫的调控机制尚不清楚。在这项研究中,马铃薯幼苗用不同浓度的外源褪黑素(50、100和150µmol L - 1)在干旱条件下处理,以系统地评估它们的生理和分子反应。结果表明,适当的褪黑素,特别是100µmol L的褪黑素可以有效地缓解干旱引起的生长抑制、氧化应激和光合作用障碍。这可以通过提高植株高度、提高光合效率、减少活性氧(ROS)积累、减少细胞死亡和脂质过氧化、提高抗氧化酶活性(超氧化物歧化酶- SOD、过氧化氢酶- CAT、过氧化物酶- POD)和渗透保护剂(脯氨酸- Pro和可溶性糖- SS)水平来证明。转录组分析显示,褪黑激素调节多种干旱响应差异表达基因(DEGs),包括多个转录因子(TF)家族(如MYB、NAC、ERF),以及与光合作用、抗氧化代谢、激素信号和碳代谢相关的途径。此外,加权基因共表达网络分析(WGCNA)和Mfuzz聚类鉴定出与光合性能和抗氧化指标密切相关的关键基因模块和中心枢纽基因。StMYB和StAPX在拟南芥中过表达,通过提高抗氧化酶活性和维持缺水条件下膜的稳定性,显著增强了拟南芥的抗旱性。本研究为褪黑素在马铃薯抗旱胁迫中的应用提供了理论基础,并为开发基于褪黑素的抗旱农艺策略奠定了分子基础。
{"title":"Integrative WGCNA analysis uncovers the molecular framework of melatonin-mediated drought stress mitigation in potato.","authors":"Songtao Liu, Yan Wang, Xinwei Wang, Xiaonuo Zhang, Yanmin Li, Yangjie Chen, Jie Yang, Lu Liu, Xiaoting Zhai","doi":"10.1186/s12870-026-08315-1","DOIUrl":"https://doi.org/10.1186/s12870-026-08315-1","url":null,"abstract":"<p><p>Drought is one of the major abiotic stress factors limiting the growth, development, and yield of potato (Solanum tuberosum L.). Melatonin, a novel plant hormone, has recently shown significant potential in enhancing plant stress resistance. However, its regulatory mechanisms in response to drought stress in potato remain unclear. In this study, potato seedlings were treated with different concentrations of exogenous melatonin (50, 100, and 150 µmol L⁻¹) under controlled drought conditions to systematically evaluate their physiological and molecular responses. The results demonstrated that appropriate melatonin application, especially at 100 µmol L⁻¹ effectively alleviated drought-induced growth inhibition, oxidative stress, and photosynthetic impairment. This was evidenced by increased plant height, enhanced photosynthetic efficiency, reduced reactive oxygen species (ROS) accumulation, decreased cell death and lipid peroxidation, as well as elevated antioxidant enzyme activities (superoxide dismutase - SOD, catalase - CAT, peroxidase - POD) and levels of osmoprotectants (proline - Pro and soluble sugars - SS). Transcriptome analysis revealed that melatonin modulates numerous drought-responsive differentially expressed genes (DEGs), including multiple transcription factor (TF) families (e.g., MYB, NAC, ERF), and pathways related to photosynthesis, antioxidative metabolism, hormone signaling, and carbon metabolism. Furthermore, weighted gene co-expression network analysis (WGCNA) and Mfuzz clustering identified key gene modules and central hub genes strongly associated with photosynthetic performance and antioxidant indicators. Overexpression of StMYB and StAPX in Arabidopsis significantly enhanced drought tolerance by improving antioxidant enzyme activities and maintaining membrane stability under water-deficit conditions. This study provides a theoretical foundation for applying melatonin in potato drought stress mitigation and lays a molecular basis for developing melatonin-based agronomic strategies for improving drought tolerance.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-09DOI: 10.1186/s12870-026-08318-y
Duygu Özelçi
This study examined the associations between genotypic variation, environmental conditions, and the phytochemical composition, mineral content, and antioxidant capacity of wild Prunus cerasifera genotypes in diverse ecogeographic regions of Eastern Anatolia (Türkiye). Thirteen genotypes were evaluated for morphological, physicochemical, and biochemical traits under varying climatic conditions, including temperature, humidity, precipitation, and solar radiation. Principal Component Analysis (PCA) revealed the multidimensional nature of this variation, indicating that environmental variables, particularly temperature and solar radiation, were associated with differences in mineral accumulation and phenolic compound levels. Warmer and sunnier environments were linked to higher nutritional density, while genotypes from more humid conditions exhibited a "dilution effect," reflecting a balance between fruit size and bioactive compound concentration. Substantial variation was observed among genotypes, with up to a five-fold difference in total phenolic content and marked differences in mineral composition, highlighting the broad genetic diversity in wild populations. Certain genotypes showed notable nutritional characteristics: 44PC01 had the highest flavonoid content and antioxidant capacity, 23PC05 accumulated higher levels of macroelements (Mg, K, Ca), and 44PC03 and 44PC07 contained the highest microelements (Fe, Zn, Cr). Partial correlation analysis, after accounting for genotypic differences, suggested that genetic background was the main source of variation in fruit quality traits, while associations with environmental variables were comparatively weaker. Overall, these findings provide evidence of phenotypic and biochemical diversity among wild P. cerasifera genotypes and emphasize their value as genetic resources for conservation and future multi-year breeding studies.
{"title":"Phenotypic, phytochemical and mineral characterization of wild Prunus cerasifera genotypes from Eastern Anatolia.","authors":"Duygu Özelçi","doi":"10.1186/s12870-026-08318-y","DOIUrl":"https://doi.org/10.1186/s12870-026-08318-y","url":null,"abstract":"<p><p>This study examined the associations between genotypic variation, environmental conditions, and the phytochemical composition, mineral content, and antioxidant capacity of wild Prunus cerasifera genotypes in diverse ecogeographic regions of Eastern Anatolia (Türkiye). Thirteen genotypes were evaluated for morphological, physicochemical, and biochemical traits under varying climatic conditions, including temperature, humidity, precipitation, and solar radiation. Principal Component Analysis (PCA) revealed the multidimensional nature of this variation, indicating that environmental variables, particularly temperature and solar radiation, were associated with differences in mineral accumulation and phenolic compound levels. Warmer and sunnier environments were linked to higher nutritional density, while genotypes from more humid conditions exhibited a \"dilution effect,\" reflecting a balance between fruit size and bioactive compound concentration. Substantial variation was observed among genotypes, with up to a five-fold difference in total phenolic content and marked differences in mineral composition, highlighting the broad genetic diversity in wild populations. Certain genotypes showed notable nutritional characteristics: 44PC01 had the highest flavonoid content and antioxidant capacity, 23PC05 accumulated higher levels of macroelements (Mg, K, Ca), and 44PC03 and 44PC07 contained the highest microelements (Fe, Zn, Cr). Partial correlation analysis, after accounting for genotypic differences, suggested that genetic background was the main source of variation in fruit quality traits, while associations with environmental variables were comparatively weaker. Overall, these findings provide evidence of phenotypic and biochemical diversity among wild P. cerasifera genotypes and emphasize their value as genetic resources for conservation and future multi-year breeding studies.</p>","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146141294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-09DOI: 10.1186/s12870-026-08284-5
Qiang Li, Mingming Zhao, Huihui Cheng, Xiaoying Lin, Ning Du, Yao Huang
{"title":"Timing of cotyledon post-emergence damage drives physiological compensation and resource allocation in oak seedling establishment.","authors":"Qiang Li, Mingming Zhao, Huihui Cheng, Xiaoying Lin, Ning Du, Yao Huang","doi":"10.1186/s12870-026-08284-5","DOIUrl":"https://doi.org/10.1186/s12870-026-08284-5","url":null,"abstract":"","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149153","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}