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Transcriptome analysis of safflower (Carthamus tinctorius L.) reveals the roles of osmotic adjustment and regulatory mechanisms in response to drought stress. 红花(Carthamus tinctorius L.)转录组分析揭示了渗透调节在干旱胁迫下的作用和调控机制。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-12 DOI: 10.1186/s12870-026-08366-4
Fahime Sabzeali, Asadollah Ahmadikhah, Naser Farrokhi, Reza Haghi
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引用次数: 0
Population structure of wild and cultivated grapevines in Armenia. 亚美尼亚野生和栽培葡萄的种群结构。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-026-08287-2
Maria Nikoghosyan, Emma Hovhannisyan, Nate Zadirako, Shengchang Duan, Armine Asatryan, Arsen Arakelyan, Kristine Margaryan, Anush Baloyan, Tomas Konecny, Hans Binder
{"title":"Population structure of wild and cultivated grapevines in Armenia.","authors":"Maria Nikoghosyan, Emma Hovhannisyan, Nate Zadirako, Shengchang Duan, Armine Asatryan, Arsen Arakelyan, Kristine Margaryan, Anush Baloyan, Tomas Konecny, Hans Binder","doi":"10.1186/s12870-026-08287-2","DOIUrl":"https://doi.org/10.1186/s12870-026-08287-2","url":null,"abstract":"","PeriodicalId":9198,"journal":{"name":"BMC Plant Biology","volume":" ","pages":""},"PeriodicalIF":4.8,"publicationDate":"2026-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146164093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
De novo assembly of the first mitochondrial genome in Benincasa reveals structural dynamics and evolutionary insights in Cucurbitaceae. 贝南卡萨第一个线粒体基因组的从头组装揭示了葫芦科植物的结构动力学和进化见解。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-026-08314-2
Kun Zhang, Hong Zhang, Zhiyin Huang, Xiaohui Liu, Bin Zhang, Xiaofei Shan, Weiqiang Fan, Chaonan Wang
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引用次数: 0
Proteomic analysis of proteins responsive to drought stress in barley. 大麦对干旱胁迫响应的蛋白质组学分析。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-026-08176-8
Walaa Abdel-Kader Ramadan, Fatma El-Sayed Mahmoud, Mahmoud Hussien Abou-Deif, Mohammed Ali
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引用次数: 0
Static magnetic field-induced metabolic shifting: coordinated phenylpropanoid induction and antioxidant system regulation in Calotropis procera callus culture. 静电磁场诱导的代谢转移:苯丙类诱导和抗氧化系统调控在鹿角豆愈伤组织培养中的作用。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-025-07997-3
Khali M Saad-Allah, Nour M Elbana, Sherien E Sobhy, Elsayed E Hafez, Asmaa M Khalifa, Shuhao Huo, Xinjuan Hu, Dina Gad

Background: Calotropis procera is a medicinally significant plant valued for its diverse bioactive pharmacological compounds. Environmental stimuli, such as static magnetic field (SMF), can act as potent elicitors, altering its metabolic pathways. This study investigates the impact of SMF exposure (150 mT) for 0, 1, 2, or 3 h on primary and secondary metabolite components, antioxidant responses, and gene expression of C. procera callus cultures.

Results: SMF induced significant, time-dependent metabolic changes. Soluble sugars increased 1.6-fold after 3 h, while soluble proteins declined to 0.47-fold of controls. Phenylpropanoid biosynthesis was markedly enhanced, with phenolics and flavonoids increasing 7.5- and 3.2-fold, respectively. HPLC analysis revealed a coordinated upregulation of phenolic and flavonoid compounds. Kaempferol and ellagic acid showed a 115% increase, while gallic acid and quinic acid derivative increased by over 116%. Conversely, cardiac glycosides and saponins were suppressed. Concurrently, SMF exposure triggered ROS, with levels of O2-•, H2O2, OH, and MDA increasing by 462, 117, 160, and 233%, respectively. However, the antioxidant capacity significantly improved, showing 6.91 and 25.93% increases in AsA and GSH levels, alongside 2.32- and 0.30-fold increases in DPPH scavenging and total antioxidant activity. CAT, POD, and SOD activities declined, while GR activity increased. Gene expression analysis revealed profound upregulation of phenylpropanoid pathway enzymes, particularly PAL (549.89-fold), CHI (100.60-fold), and F3H (50.90-fold).

Conclusions: These results demonstrated that SMF elicited coordinated metabolic reprogramming in C. procera, enhancing non-enzymatic antioxidants and phenylpropanoid biosynthesis while suppressing steroidal pathways and enzymatic antioxidant activity, highlighting its potential as a biophysical tool for metabolic engineering.

背景:原花椒是一种具有重要药用价值的植物,具有丰富的药理活性。环境刺激,如静磁场(SMF),可以作为有效的促子,改变其代谢途径。本研究研究了150 mT SMF暴露0、1、2或3小时对原、次代谢物成分、抗氧化反应和基因表达的影响。结果:SMF诱导了显著的时间依赖性代谢变化。可溶性糖在3小时后增加了1.6倍,而可溶性蛋白则下降到0.47倍。苯丙素生物合成显著增强,酚类物质和类黄酮含量分别增加7.5倍和3.2倍。高效液相色谱分析显示酚类和类黄酮化合物协同上调。山奈酚和鞣花酸增加了115%,没食子酸和奎宁酸衍生物增加了116%以上。相反,心糖苷和皂苷被抑制。同时,SMF暴露引发ROS, O2-•、H2O2、OH•和MDA水平分别增加462%、117%、160%和233%。然而,抗氧化能力显著提高,AsA和GSH水平分别提高6.91%和25.93%,清除DPPH•和总抗氧化能力分别提高2.32倍和0.30倍。CAT、POD、SOD活性降低,GR活性升高。基因表达分析显示,苯丙素途径酶显著上调,尤其是PAL(549.89倍)、CHI(100.60倍)和F3H(50.90倍)。结论:这些结果表明,SMF引发了C. procera的协调代谢重编程,增强了非酶抗氧化剂和苯丙类生物合成,同时抑制了甾体途径和酶抗氧化活性,突出了其作为代谢工程生物物理工具的潜力。
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引用次数: 0
Nano-silicon spraying enhances antioxidant defense and nutritional value in pepper fruits: a metabolomics insight. 纳米硅喷雾增强辣椒果实的抗氧化防御和营养价值:代谢组学的见解。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-026-08293-4
Yulin Liu, Qianqian He, Ruixing Zhang, Yu Shi, Abid Khan, Yi Zhang

Background: Postharvest pepper fruits undergo quality deterioration including water loss, shrinkage and nutritional decline, which limits their commercial value. Notably, nano-silicon (SiNPs) improves postharvest vegetable quality, but its regulatory mechanism on pepper storage quality, especially metabolic changes, remains unclear. Therefore, this study explored SiNPs effects on P70 pepper phenotype, storage quality and metabolism to optimize postharvest preservation.

Results: SiNPs treatment significantly improved P70 pepper fruits storage quality. Under roomtemperature (RT) and low temperature (LT) storage conditions, SiNPs treatment (RT-NP, LT-NP) effectively alleviated shrinkage, water loss, and hardness decline. After 6 days of storage, LT-NP group had 1.09-fold higher hardness than LT group, while LT group weight loss was 1.46-fold that of LT-NP. For nutritional quality indicators, SiNPs treatment maintained higher contents of vitamin C, flavonoids, soluble solids and soluble sugar. In terms of antioxidant capacity, SiNPs treatment enhanced the activities of superoxide dismutase, peroxidase and catalase; LT-NP had 1.11-fold higher SOD at 6 days and 1.54-fold higher POD at 4 days than LT. Metabolomic analysis detected1041 metabolites, mainly including flavonoids (22.1%) and phenolic acids (13.7%). Compared with LT group, LT-NP had 164 up- and 79 down-regulated differential metabolites, enriched in flavonoid biosynthesis, starch-sucrose and amino acid metabolism. LT-NP up-regulated flavonoids (Galangin, Apigenin), D-Sucrose and activated polyamine biosynthesis.

Conclusions: SiNPs improves P70 pepper postharvest quality by reducing water loss, maintaining hardness and nutrients. Collectively, the mechanism involves enhanced antioxidant enzyme activity and regulated key metabolites in flavonoid, sugar and amino acid pathways, supporting SiNPs application in pepper postharvest preservation.

背景:辣椒果实采后会发生水分流失、收缩和营养下降等品质劣化,限制了其商业价值。值得注意的是,纳米硅(SiNPs)改善了采后蔬菜品质,但其对辣椒贮藏品质的调控机制,尤其是代谢变化的调控机制尚不清楚。因此,本研究探讨了SiNPs对P70辣椒表型、贮藏品质和代谢的影响,以优化采后保鲜。结果:SiNPs处理显著提高了P70辣椒果实贮藏品质。在室温(RT)和低温(LT)储存条件下,SiNPs处理(RT- np、LT- np)能有效缓解收缩、失水和硬度下降。贮藏6 d后,LT- np组的硬度比LT组高1.09倍,LT组的减重是LT- np组的1.46倍。在营养品质指标方面,SiNPs处理保持了较高的维生素C、类黄酮、可溶性固形物和可溶性糖含量。在抗氧化能力方面,SiNPs处理提高了超氧化物歧化酶、过氧化物酶和过氧化氢酶的活性;在第6天,LT-NP的SOD含量比lt高1.11倍,POD含量比lt高1.54倍。代谢组学分析检测到1041种代谢物,主要包括黄酮类化合物(22.1%)和酚酸(13.7%)。与LT组相比,LT- np有164种差异代谢物上调,79种差异代谢物下调,类黄酮生物合成、淀粉-蔗糖和氨基酸代谢富集。LT-NP上调黄酮类化合物(高良姜素、芹菜素)、d -蔗糖和活化的多胺生物合成。结论:SiNPs通过减少水分流失、保持甜椒硬度和营养成分来改善P70辣椒采后品质。总的来说,其机制包括增强抗氧化酶活性和调节黄酮类、糖和氨基酸途径的关键代谢物,支持SiNPs在辣椒采后保鲜中的应用。
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引用次数: 0
Evolutionary and functional characterization of BBX genes in the barley pangenome. 大麦泛基因组BBX基因的进化与功能分析。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-026-08317-z
Xin Liu, Han Zhang, Xuan Zhou, Yuanyuan Zuo, Gang Chen, Xin Zhao, Yue Yan, Haosheng Li, Minghu Zhang, Chen Chen
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引用次数: 0
Genome-wide identification and analysis of the Delay Of Germination 1 (DOG1) gene family in Brassica napus and its potential role in Manganese (Mn) stress response. 甘蓝型油菜延迟萌发1 (DOG1)基因家族的全基因组鉴定与分析及其在锰胁迫响应中的潜在作用
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-026-08296-1
Yan Hu, Hui Ling, Xinyue Song, Weishe Hu
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引用次数: 0
Effectiveness of Streptomyces enissocaesilis and chitosan on agronomic, biochemical, and quality traits of soybean under different irrigation intervals. 不同灌溉间隔条件下,异构链霉菌和壳聚糖对大豆农艺、生化和品质性状的影响。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-026-08153-1
Asmaa Hamoda, Mokhtar Dabbour, Sobhi F Lamlom, Eman A El-Akshar
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引用次数: 0
The effects of nitrogen and phosphorus deficiency on the main physiology of Ilex chinensis and transcriptomic analysis. 缺氮缺磷对冬青主要生理机能的影响及转录组学分析。
IF 4.8 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-02-11 DOI: 10.1186/s12870-026-08360-w
Jing Liu, Gong Cheng, Jiejie Jiao, Jiaxin Hu, Bingsong Zheng, Daoliang Yan

Background: Nitrogen (N) and phosphorus (P) are essential macronutrients that drive plant growth and photosynthesis; their deficiencies alters both plant physiology and metabolism. However, the molecular mechanisms by which Ilex chinensis responds to N and P starvation remain largely unknown.

Results: We subjected two-year-old I. chinensis seedlings to 10 weeks of low N (LN) and low P (LP) stress and profiled the leaf transcriptome. Both stresses restricted shoot elongation but stimulated lateral root proliferation, with the strongest phenotype under LN2 and LP2 regimes. Relative to the control, LN2 group exhibited 2.1- to 3.9-fold increases in nitrate reductase (NR), glutamine synthetase (GS), superoxide dismutase (SOD), peroxidase (POD), and malondialdehyde (MDA) (P < 0.01). LP2 group displayed 1.7- to 2.4-fold higher acid phosphatase (ACP), SOD, POD activity, anthocyanin content, and MDA (P < 0.01). Transcriptomic analysis revealed that pathways enriched under N and P deficiency were responsive to plant growth, root development, and N and P uptake.

Conclusions: Our data reveal the integrated physiological and transcriptional adjustments that allow I. chinensis to cope with N and P deficiency stress, and identifies potential target genes for improving nutrient use efficiency. These findings provide new insights into the physiological and molecular responses of I. chinensis to N and P deficiency stress and offer valuable information for optimizing its cultivation under nutrient-limited conditions.

背景:氮(N)和磷(P)是驱动植物生长和光合作用的必需常量营养素;它们的缺乏改变了植物的生理和新陈代谢。然而,冬青对氮磷饥饿反应的分子机制尚不清楚。结果:我们对2年生的中国梧桐树幼苗进行了10周的低氮和低磷胁迫,并分析了叶片转录组。两种胁迫均抑制了茎伸长,但刺激了侧根增殖,其中LN2和LP2胁迫下的表型最强。LN2组硝酸还原酶(NR)、谷氨酰胺合成酶(GS)、超氧化物歧化酶(SOD)、过氧化物酶(POD)和丙二醛(MDA)含量较对照组升高2.1 ~ 3.9倍(p2组酸性磷酸酶(ACP)、SOD、POD活性、花青素含量和丙二醛(MDA)含量升高1.7 ~ 2.4倍)。我们的数据揭示了中华水杨应对氮磷缺乏胁迫的综合生理和转录调节,并确定了提高养分利用效率的潜在靶基因。这些研究结果为深入了解羊草对氮磷缺乏胁迫的生理和分子反应提供了新的认识,并为优化羊草在营养限制条件下的栽培提供了有价值的信息。
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BMC Plant Biology
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