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Beyond Multilevel Selection in Cancer: Rethinking Metastasis Through Selection for Function. 超越癌症的多水平选择:通过功能选择重新思考转移。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-03 DOI: 10.1002/bies.70094
Frédéric Thomas, Antoine M Dujon

Laplane et al. recently provided a valuable framework for understanding cancer evolution through multilevel selection (MLS), distinguishing between MLS1, where groups differ in persistence based on the traits of their constituent cells but do not reproduce or evolve group-level adaptations, and MLS2, where groups themselves reproduce and possess emergent fitness distinct from that of individual cells. However, as the authors themselves acknowledge, applying MLS2 to metastasis is challenging for several reasons. We argue that, rather than behaving as isolated evolutionary units, tumor sites function as components of a distributed system. This perspective suggests that metastasis may be better understood through the lens of selection for function, a framework that explains how traits contributing to system-level persistence can be maintained without requiring group-level reproduction. This approach complements MLS theory and helps account for the resilience of the metastatic system as a whole, namely, the persistence and coordination of multiple tumor sites functioning as a collective rather than as isolated tumors, beyond classical Darwinian models. It also aligns with the view that metastasis may reflect the reactivation of ancient cellular programs in a novel, nonreproductive context.

Laplane等人最近通过多层选择(multilevel selection, MLS)为理解癌症进化提供了一个有价值的框架,区分了MLS1和MLS2,其中群体根据其组成细胞的特征在持久性上存在差异,但不繁殖或进化群体水平的适应性,而MLS2则是群体自身繁殖并具有与个体细胞不同的突生适应性。然而,正如作者自己承认的那样,由于几个原因,将MLS2应用于转移是具有挑战性的。我们认为,肿瘤部位不是作为孤立的进化单位,而是作为分布式系统的组成部分发挥作用。这一观点表明,通过功能选择可以更好地理解转移,这一框架解释了如何在不需要群体水平繁殖的情况下维持有助于系统水平持久性的特征。这种方法补充了MLS理论,并有助于解释转移系统作为一个整体的弹性,即多个肿瘤部位作为一个集体而不是作为孤立的肿瘤的持续和协调,超越了经典的达尔文模型。这也与转移可能反映古代细胞程序在新的非生殖环境中的再激活的观点一致。
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引用次数: 0
Where, When, and How? Integrating Spatiotemporal Cues in Cell Division. 地点、时间和方式?整合细胞分裂的时空线索。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-27 DOI: 10.1002/bies.70093
Luca Cirillo, Hradini Konthalapalli, Claudio Alfieri, Jonathon Pines

To an external observer, the goal of cell division is evident from the very shape of the duplicated chromosomes. Cells, however, cannot see-they must proceed by groping in the dark, searching for their own DNA-and a series of sophisticated spatial mechanisms enables them to align and segregate their genetic material. Spatial organization is only part of the challenge: cell division is also a race against time-spending too little or too much time in mitosis can be equally detrimental to cell survival. Dividing cells must not only coordinate the movement of often dozens of chromosomes but must do so with precise timing. Yet, chromosome segregation occurs with remarkable accuracy. In this review, we highlight the role of mitotic chromosomes as a platform to integrate spatial and temporal cues to ensure their successful segregation.

对于外部观察者来说,细胞分裂的目的从复制染色体的形状就可以看出来。然而,细胞是看不见的——它们必须在黑暗中摸索,寻找自己的dna——一系列复杂的空间机制使它们能够排列和分离自己的遗传物质。空间组织只是挑战的一部分:细胞分裂也是一场与时间的赛跑——在有丝分裂中花费的时间太少或太多都同样不利于细胞存活。分裂的细胞不仅要协调几十条染色体的运动,而且要有精确的时间。然而,染色体分离发生得非常准确。在这篇综述中,我们强调了有丝分裂染色体作为整合空间和时间线索以确保其成功分离的平台的作用。
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引用次数: 0
Flow Cytometry: Advances, Challenges and Trends. 流式细胞术:进展、挑战和趋势。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-27 DOI: 10.1002/bies.70091
J Paul Robinson, Grzegorz B Gmyrek, Bartek Rajwa

Flow cytometry is a versatile analytical technology for measuring physical and molecular characteristics of individual cells or particles in suspension. The technology has had its greatest impact in immunology, enabling the identification and quantification of rare cell populations within complex mixtures, but applications span diverse biological systems including hematopoietic cells, microorganisms, cultured cells, plant cells, gametes, and disaggregated tissues. Target molecules are typically identified using fluorophore-conjugated antibodies, though alternative labeling strategies exist. A key advantage of flow cytometry is the ability to physically isolate cells of interest for downstream applications such as culture, genomic analysis, or functional studies. The field has undergone substantial evolution from conventional filter-based polychromatic systems to spectral cytometry platforms that capture full emission spectra, enabling higher-parameter analyses and more flexible panel design. This review examines current capabilities and limitations of flow cytometry technology, with emphasis on recent advances in spectral detection, quantitative standardization, and computational analysis. We discuss remaining technical challenges and explore emerging opportunities for innovation in excitation systems, detector technology, and integration with artificial intelligence-based analysis platforms. Addressing these challenges will be essential for cytometry to continue driving biological discovery and clinical applications in the coming decades.

流式细胞术是一种多功能的分析技术,用于测量悬浮中单个细胞或颗粒的物理和分子特性。该技术对免疫学产生了最大的影响,使鉴定和定量复杂混合物中的稀有细胞群成为可能,但应用范围涵盖多种生物系统,包括造血细胞、微生物、培养细胞、植物细胞、配子和分解组织。虽然存在其他标记策略,但通常使用荧光基团偶联抗体来识别目标分子。流式细胞术的一个关键优势是能够物理分离下游应用的细胞,如培养,基因组分析或功能研究。该领域经历了从传统的基于滤光片的多色系统到捕获全发射光谱的光谱细胞仪平台的重大演变,实现了更高参数的分析和更灵活的面板设计。本文综述了流式细胞术技术目前的能力和局限性,重点介绍了光谱检测、定量标准化和计算分析方面的最新进展。我们将讨论剩余的技术挑战,并探索励磁系统、探测器技术以及与基于人工智能的分析平台集成的创新机会。解决这些挑战对于细胞术在未来几十年继续推动生物学发现和临床应用至关重要。
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引用次数: 0
The Double Face of Base Excision Repair: Preventing and Triggering Double-Strand Breaks. 碱基切除修复的双面:预防和触发双链断裂。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-21 DOI: 10.1002/bies.70092
Susan M Gasser

How cells repair oxidative damage to DNA has been studied for over 60 years. Recent evidence confirms that the base excision repair (BER) machinery not only acts to restore an intact double DNA helix by replacing oxidized bases, but under some circumstances, BER goes awry, generating double-strand breaks and provoking chromosome fragmentation. This fragmentation can lead to extensive genomic rearrangements that correlate with oncogenesis. Whether the BER factors suppress or promote DNA damage depends on multiple parameters: the nature of the damage, the clustering of modified bases, the pathway of BER chosen, and chromatin remodelers. Recent data leading to this unexpected role for BER are reviewed here.

细胞如何修复DNA的氧化损伤已经被研究了60多年。最近的证据证实,碱基切除修复(BER)机制不仅通过替换氧化碱基来恢复完整的DNA双螺旋,而且在某些情况下,BER出错,产生双链断裂并引发染色体断裂。这种碎片化可导致与肿瘤发生相关的广泛的基因组重排。BER因子是抑制还是促进DNA损伤取决于多个参数:损伤的性质、修饰碱基的聚类、BER选择的途径和染色质重塑子。本文回顾了导致BER发挥这一意想不到作用的最新数据。
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引用次数: 0
Issue Information: BioEssays 12/2025 期刊信息:BioEssays 12/2025
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-20 DOI: 10.1002/bies.70089
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引用次数: 0
Selection of Host Plasma Membrane Lipids by HIV-1 Gag Protein. HIV-1 Gag蛋白对宿主细胞膜脂质的选择
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-20 DOI: 10.1002/bies.70090
Nario Tomishige, Yves Mély, Toshihide Kobayashi

Human immunodeficiency virus type 1 (HIV-1) possesses an envelope enriched with a specific set of host plasma membrane (PM) lipids, a composition that is critical for viral infectivity. Virus budding is initiated by the binding of the viral Gag protein to phosphatidylinositol-4,5-bisphosphate (PI(4,5)P2) located in the inner leaflet of the PM. However, the mechanism by which inner leaflet-associated Gag protein contributes to the enrichment of specific outer leaflet lipids, such as sphingomyelin (SM) and cholesterol (Chol), remains poorly understood. Visualization of endogenous lipids using specific lipid probes and advanced microscopy has revealed that Gag multimerization reorganizes SM- and Chol-rich lipid domains in a curvature-dependent manner. To further elucidate the molecular mechanisms underlying Gag-induced selective lipid enrichment across the bilayer, two potential scenarios are discussed: one involving interdigitation and the other involving Chol enrichment through flip-flop. These models are considered in the context of existing literature describing the distribution and interactions of SM, PI(4,5)P2, and Chol within the PM.

人类免疫缺陷病毒1型(HIV-1)具有一个富含一组特定宿主质膜(PM)脂质的包膜,这是一种对病毒传染性至关重要的组成物。病毒出芽是由病毒Gag蛋白与位于PM内小叶的磷脂酰肌醇-4,5-二磷酸(PI(4,5)P2)结合而引发的。然而,关于内小叶相关Gag蛋白促进特定外小叶脂质(如鞘磷脂(SM)和胆固醇(Chol))富集的机制仍知之甚少。使用特定的脂质探针和先进的显微镜观察内源性脂质,发现Gag多聚化以曲率依赖的方式重组SM-和富含胆固醇的脂质结构域。为了进一步阐明gag诱导的跨双分子层选择性脂质富集的分子机制,本文讨论了两种可能的情况:一种涉及交叉作用,另一种涉及通过触发器富集Chol。这些模型是在现有文献的背景下考虑的,这些文献描述了PM中SM、PI(4,5)P2和Chol的分布和相互作用。
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引用次数: 0
Protein Kinase C Regulates Meiosis in Mammalian Oocytes. 蛋白激酶C调控哺乳动物卵母细胞减数分裂。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-10 DOI: 10.1002/bies.70087
Jaroslav Kalous, Fatima J Berro, Lucie Nemcova

The protein kinase C (PKC) family comprises enzyme kinases that regulate cell survival, metabolism, and proliferation. PKC isotypes (PKCs) phosphorylate specific downstream substrates, thereby controlling critical steps in both mitotic and meiotic cell division. Throughout the cell cycle, PKCs orchestrate essential processes, such as chromosome segregation, recombination, and cell cycle progression. In vertebrates, PKCs play essential roles in oogenesis and the early stages of embryo development. Disruption of PKC signaling in mammalian oocytes can lead to errors in chromosome segregation and induce meiotic arrest. Therefore, investigating PKC function in meiosis is crucial for advancing fundamental biological research and for developing new approaches to infertility treatment.

蛋白激酶C (PKC)家族包括调节细胞存活、代谢和增殖的酶激酶。PKC同型(PKC)磷酸化特定的下游底物,从而控制有丝分裂和减数分裂细胞分裂的关键步骤。在整个细胞周期中,PKCs协调基本过程,如染色体分离、重组和细胞周期进程。在脊椎动物中,PKCs在卵子发生和胚胎发育的早期阶段起着至关重要的作用。哺乳动物卵母细胞中PKC信号的中断可导致染色体分离错误并诱导减数分裂停止。因此,研究PKC在减数分裂中的功能对于推进基础生物学研究和开发不孕症治疗的新方法至关重要。
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引用次数: 0
Hypothesis: Ephrin-Eph Signaling Pathways Provide Novel Targets for Accelerated Re-Epithelialization of Cutaneous Wounds. 假设:Ephrin-Eph信号通路为皮肤伤口加速再上皮化提供了新的靶点。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-06 DOI: 10.1002/bies.70088
Rodolfo D Vicetti Miguel, Mohan Liu, Gabriel J Campion, Thomas L Cherpes

Cutaneous wound repair is tightly regulated by numerous signaling pathways that coordinate a multiphased response. The repair process includes a proliferative phase that forms granulation tissue at the wound base and re-epithelialization of the wound surface. Two of the signaling pathways that regulate the proliferative phase are Wnt/β-catenin and Notch, stimulating the proliferation of keratinocytes and fibroblasts, respectively. While ephrin-Eph signaling pathways also induce keratinocyte proliferation, their contribution to cutaneous wound repair is less defined. In distal limb wounds on horses, the proliferative phase is often characterized by the formation of excessive granulation tissue that delays healing by impeding keratinocyte migration from the wound margin. Comparison of normal and aberrant healing makes distal limb horse wounds well-suited for defining molecular mechanisms that regulate repair during the proliferative phase and identifying targets that promote healthy wound healing. We hypothesize that ephrin-Eph signaling pathways that stimulate keratinocyte proliferation provide an unexplored but effective target for accelerating re-epithelialization in distal limb wounds of the horse. As re-epithelialization is a key to physiologic healing in many mammals, we further hypothesize that ephrin-Eph signaling pathways offer targets for enhanced wound repair in humans.

皮肤伤口修复是由许多信号通路密切调节,协调一个多阶段的反应。修复过程包括在伤口基部形成肉芽组织的增殖阶段和伤口表面的再上皮化。两个调节增殖期的信号通路是Wnt/β-catenin和Notch,分别刺激角质形成细胞和成纤维细胞的增殖。虽然ephrin-Eph信号通路也诱导角质细胞增殖,但其对皮肤伤口修复的作用尚不明确。在马的远端肢体伤口中,增生期的特征通常是形成过多的肉芽组织,通过阻碍角化细胞从伤口边缘迁移来延迟愈合。正常和异常愈合的比较使得远肢马伤口非常适合定义增殖阶段调节修复的分子机制,并确定促进健康伤口愈合的靶点。我们假设刺激角化细胞增殖的ephrin-Eph信号通路为加速马远端肢体伤口的再上皮化提供了一个尚未探索但有效的靶点。由于再上皮化是许多哺乳动物生理性愈合的关键,我们进一步假设ephrin-Eph信号通路为增强人类伤口修复提供了靶点。
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引用次数: 0
Even Scientists Seem Unable to Change Their Minds. 即使是科学家似乎也无法改变他们的想法。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-02 DOI: 10.1002/bies.70085
Dave Speijer
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引用次数: 0
IL-12 and the Antitumor Response: The Good, the Bad, and the Unknown. IL-12与抗肿瘤反应:好、坏和未知。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-02 DOI: 10.1002/bies.70086
Olivier Fesneau, Thomas Duhen

IL-12 is a proinflammatory cytokine secreted by antigen-presenting cells. It promotes the differentiation of cytotoxic T cells, which makes it a strong candidate to boost the antitumor immune response in cancer patients. While its first use in humans faced severe toxicity, more recent approaches have been taken to limit toxicity while retaining its biologic function. These strategies, summarized in this review, include systemic and local delivery of IL-12 and demonstrated promising results in murine tumor models. However, their translation in cancer patients was met with limited efficacy. Recent evidence indicates that exposure to IL-12 results in the expression of immunoregulatory molecules by T cells, suggesting the existence of a negative feedback loop that might impair the antitumor immune response. Therefore, a more thorough understanding of the biology of IL-12 in the context of cancer is crucial to advance the design of novel clinical trials. This approach can lead to improved therapy regimens and promising results in the future.

IL-12是抗原呈递细胞分泌的促炎细胞因子。它促进细胞毒性T细胞的分化,这使得它成为增强癌症患者抗肿瘤免疫反应的强有力的候选者。虽然它在人类中的首次使用面临严重的毒性,但最近已经采取了更多的方法来限制毒性,同时保留其生物功能。本文总结了这些策略,包括全身和局部递送IL-12,并在小鼠肿瘤模型中显示出有希望的结果。然而,它们在癌症患者中的转化效果有限。最近的证据表明,暴露于IL-12会导致T细胞表达免疫调节分子,这表明存在一个可能损害抗肿瘤免疫反应的负反馈回路。因此,更深入地了解IL-12在癌症背景下的生物学作用,对于推进新型临床试验的设计至关重要。这种方法可以改善治疗方案,并在未来取得有希望的结果。
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引用次数: 0
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