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Cytosolic fMet-Protein Synthesis as Source of Endogenous Ligands for Formyl Peptide Receptors 酰基肽受体内源性配体来源的胞浆fmet蛋白合成。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-28 DOI: 10.1002/bies.70074
Chang-Seok Lee, Cheol-Sang Hwang

Formyl peptides, exemplified by the synthetic tripeptide formyl-Met-Leu-Phe (fMLF), are well-established ligands for formyl peptide receptors (FPRs), central to neutrophil chemotaxis, and innate immune signaling. Traditionally attributed to bacterial and mitochondrial origins, these peptides are now proposed to arise from an additional, stress-inducible source within the eukaryotic cytosol. Recent findings suggest that under specific stress conditions, eukaryotic translation can initiate with formylmethionine (fMet), producing fMet-bearing nascent chains that are processed by the fMet/N-degron and fMet-mediated ribosome quality control (fMet-RQC) pathways. These proteostatic mechanisms may generate short, structurally diverse formyl peptides with the potential to function as endogenous FPR ligands. By introducing cytosolic proteostasis as a hypothetical source of formyl peptides, this perspective expands the landscape of formyl peptide biology and opens new directions for investigating their roles in immune regulation under stress and disease.

甲酰基肽,以合成的三肽甲酰基- met -亮氨酸(fMLF)为例,是公认的甲酰基肽受体(fpr)的配体,对中性粒细胞趋化和先天免疫信号传导起着重要作用。传统上认为这些多肽起源于细菌和线粒体,现在提出这些多肽来自真核细胞质中一个额外的、应力诱导的来源。最近的研究结果表明,在特定的应激条件下,真核翻译可以通过甲酰蛋氨酸(fMet)启动,产生含fMet的新生链,并通过fMet/N-degron和fMet介导的核糖体质量控制(fMet- rqc)途径进行加工。这些蛋白质抑制机制可能产生短的,结构多样的甲酰基肽,具有内源性FPR配体的功能。通过引入细胞质蛋白酶静止作为甲酰基肽的假设来源,这一观点扩展了甲酰基肽生物学的视野,并为研究它们在应激和疾病下的免疫调节中的作用开辟了新的方向。
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引用次数: 0
Cancer Metabolism Meets DNA Repair: The Hidden Link to Therapy Resistance 癌症代谢与DNA修复:治疗抵抗的隐藏联系。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-28 DOI: 10.1002/bies.70073
Chunzhang Yang

Cancer cells exhibit reprogrammed metabolic pathways to sustain aggressive phenotypes, including continuous cell division, stemness, invasion, and metastasis. Emerging evidence suggests that these metabolic adaptations profoundly impact DNA repair pathways, which contribute to the responses to therapy and influence overall outcomes. Metabolic processes such as the Warburg effect, nicotinamide adenine dinucleotide (NAD) metabolism, glutamine metabolism, and one-carbon metabolism support DNA repair by expanding the metabolite pool and facilitating post-translational modifications. Conversely, oncometabolites impair DNA repair pathways through epigenetic reprogramming, thereby promoting genomic instability. This review highlights recent discoveries that elucidate the intricate connections between metabolic hallmarks in cancer cells and DNA repair mechanisms, offering insights into potential therapeutic targets for future cancer treatments.

癌细胞表现出重编程的代谢途径来维持侵袭性表型,包括连续的细胞分裂、干性、侵袭和转移。新出现的证据表明,这些代谢适应深刻地影响DNA修复途径,这有助于对治疗的反应并影响总体结果。代谢过程,如Warburg效应、烟酰胺腺嘌呤二核苷酸(NAD)代谢、谷氨酰胺代谢和单碳代谢,通过扩大代谢物库和促进翻译后修饰来支持DNA修复。相反,肿瘤代谢物通过表观遗传重编程损害DNA修复途径,从而促进基因组不稳定。本综述重点介绍了阐明癌细胞代谢标志与DNA修复机制之间复杂联系的最新发现,为未来癌症治疗的潜在治疗靶点提供了见解。
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引用次数: 0
Issue Information: BioEssays 10/2025 期刊信息:BioEssays 10/2025
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-23 DOI: 10.1002/bies.70067
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引用次数: 0
Multimodal Breathing Control: Pontomedullary Mechanisms and Current Perspectives 多模式呼吸控制:桥髓机制和当前的观点。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-22 DOI: 10.1002/bies.70072
Nathan A. Baertsch, Elora Reily, Jonathan Sedano, Ryan S. Phillips, Joseph W. Arthurs

Breathing is a vital, continuous behavior that maintains physiological homeostasis, yet it is also remarkably flexible—modulated by volitional, emotional, and behavioral states. This review highlights recent advances in understanding how distributed neural circuits, particularly in the ventrolateral medulla and dorsolateral pons, integrate both homeostatic and non-homeostatic influences on respiratory control. We examine how higher-order brain regions interact with brainstem rhythm generators such as the preBötzinger complex, emphasizing a dynamic, state-dependent framework for respiratory regulation. Once considered a reflexive brainstem function, breathing is now recognized as the emergent output of interconnected networks that flexibly adapt rhythm and pattern based on internal state, behavior, and environmental context. Grasping this complexity is critical for understanding both the normal versatility and pathological vulnerability of respiratory control.

呼吸是维持生理平衡的重要的、持续的行为,但它也是非常灵活的——由意志、情绪和行为状态调节。这篇综述强调了最近在理解分布式神经回路,特别是在延髓腹外侧和脑桥背外侧,如何整合稳态和非稳态对呼吸控制的影响方面的进展。我们研究了高阶脑区如何与脑干节律产生器(如preBötzinger复合体)相互作用,强调呼吸调节的动态、状态依赖框架。呼吸曾经被认为是一种反射性的脑干功能,现在被认为是基于内部状态、行为和环境背景灵活适应节奏和模式的互联网络的紧急输出。掌握这种复杂性对于理解呼吸控制的正常通用性和病理脆弱性至关重要。
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引用次数: 0
Equality, Diversity and Inclusivity (EDI) Sandpit: Views on Research Paradigms and the Future of Academia 平等、多元和包容(EDI)沙坑:对研究范式和学术界未来的看法。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-14 DOI: 10.1002/bies.70070
Riaz Akhtar, Eric Hill, Paul Gilbert, Massimo Vassalli, Elizabeth G. Canty-Laird, Lisa J. White

In this report, we summarize the outcome of a consultation session held in January 2024 appraising adopted attitudes within scientific research. This Equality, Diversity & Inclusion (EDI) Sandpit was a collaboration between interdisciplinary researchers from the ECMage (Extracellular Matrix [ECM] ageing across the life course interdisciplinary research network) and BLAST (Building Links in Ageing Science & Translation) networks, both part of the UK Ageing Networks, and the lifETIME (Engineered Tissues for Discovery, Industry and Medicine) Centre for Doctoral Training. Statements representing previously prevalent patterns of thinking that could influence research practice were put to delegate teams to discuss in relation to social and cultural behaviors that have been adopted over the years. Discussions focused on five themes across two main categories, aiming to identify and understand areas where change is needed, as well as to offer suggestions on how best to concentrate efforts to make the most impact.

在本报告中,我们总结了2024年1月举行的一次评估科学研究中采用的态度的协商会议的结果。这个平等,多样性和包容性(EDI)沙坑是来自ECMage(细胞外基质[ECM]老化跨越生命过程跨学科研究网络)和BLAST(老化科学和翻译的建立联系)网络的跨学科研究人员之间的合作,这两个网络都是英国老龄化网络的一部分,以及lifETIME(用于发现,工业和医学的工程组织)博士培训中心。代表以前可能影响研究实践的流行思维模式的陈述被提交给委托团队讨论与多年来采用的社会和文化行为有关的问题。讨论集中在两个主要类别的五个主题上,旨在确定和了解需要变革的领域,并就如何最好地集中力量产生最大影响提出建议。
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引用次数: 0
The Dark Side of Flow: Shear Stress as a Trigger for Thromboinflammatory NETs 血流的阴暗面:剪切应力作为血栓炎性NETs的触发因素。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-14 DOI: 10.1002/bies.70071
Minoru Inoue
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引用次数: 0
Biosensors for Detecting Small Rho GTPases: Monitoring Expression and Activation 用于检测小Rho gtpase的生物传感器:监测表达和激活。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-10 DOI: 10.1002/bies.70069
Nik Yasmin Umaira Hasnizan, Chong Chien Fung, Saw Keat Chuan, Nurul Syafawani Fizal, Noorhayati Idros, Ana Masara Ahmad Mokhtar

Advanced biosensing technologies, such as Förster resonance energy transfer (FRET) and bioluminescence resonance energy transfer (BRET), have enabled real-time, high-resolution tracking of Rho GTPase activity, surpassing traditional methods like pull-down assays. However, current biosensors mainly detect the GTP-bound active state through effector interactions, without directly measuring Rho GTPase expression or identifying related biomarkers of abnormal activation. Small Rho GTPases are essential molecular switches that regulate key cellular processes such as cytoskeletal organization, cell movement, polarity, vesicle trafficking, and the cell cycle. Their precise activation and deactivation are critical for cellular balance, and disruptions in their signaling pathways are linked to diseases like cancer and immune disorders. Monitoring their activity is vital for understanding these processes and developing treatments. This study highlights the need for next-generation biosensors capable of directly monitoring expression levels and novel biomarkers, offering new avenues for research and therapeutic development targeting small Rho GTPases.

先进的生物传感技术,如Förster共振能量转移(FRET)和生物发光共振能量转移(BRET),已经实现了Rho GTPase活性的实时,高分辨率跟踪,超越了传统的方法,如下拉试验。然而,目前的生物传感器主要通过效应物相互作用来检测gtp结合的活性状态,而没有直接测量Rho GTPase的表达或识别异常激活的相关生物标志物。小Rho gtpase是必不可少的分子开关,调节关键的细胞过程,如细胞骨架组织、细胞运动、极性、囊泡运输和细胞周期。它们的精确激活和失活对细胞平衡至关重要,它们信号通路的中断与癌症和免疫紊乱等疾病有关。监测它们的活动对于了解这些过程和开发治疗方法至关重要。这项研究强调了能够直接监测表达水平和新型生物标志物的下一代生物传感器的需求,为针对小Rho GTPases的研究和治疗开发提供了新的途径。
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引用次数: 0
Emerging Perspectives on Gonadotropin Regulation in Vertebrates Revealed by the Discovery of FSH-RH in Teleosts 硬骨鱼中FSH-RH的发现揭示了脊椎动物促性腺激素调节的新观点。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-10 DOI: 10.1002/bies.70066
Daichi Kayo, Shun Kenny Uehara, Muhammad Rahmad Royan, Shinji Kanda

Vertebrate gonadal function is regulated by pituitary gonadotropins, follicle-stimulating hormone (FSH) and luteinizing hormone (LH). These hormones are considered to be regulated by hypothalamic factor(s). Since the discovery of gonadotropin-releasing hormone (GnRH) in mammals, which stimulates the secretion of both FSH and LH, GnRH had been believed to be the sole gonadotropin-releasing hormone in vertebrates for more than 5 decades. However, recent studies have identified an alternative primary regulator of FSH in teleosts, leading to the hypothesis that FSH and LH are regulated by different factors in teleosts (dual GnRH model). This contrasts with the situation in mammals, where a single GnRH regulates both hormones (solo GnRH model). Importantly, although underlying mechanisms likely differ, both teleosts and mammals reproduce efficiently and have convergently evolved similar phenomena, including steroid feedback regulation. In this review, by comparing these taxa, we summarize mechanistic differences and propose an evolutionary scenario based on current experimental evidence.

脊椎动物的性腺功能受垂体促性腺激素、促卵泡激素(FSH)和黄体生成素(LH)的调节。这些激素被认为是由下丘脑因子调节的。自从在哺乳动物中发现促性腺激素释放激素(GnRH)以来,50多年来,GnRH一直被认为是脊椎动物中唯一的促性腺激素释放激素。然而,最近的研究发现了硬骨鱼中FSH的另一种主要调节因子,从而提出了硬骨鱼中FSH和LH受不同因素调节的假设(双GnRH模型)。这与哺乳动物的情况形成对比,在哺乳动物中,单个GnRH调节两种激素(单独GnRH模型)。重要的是,尽管潜在的机制可能不同,但硬骨鱼和哺乳动物都能有效地繁殖,并逐渐进化出类似的现象,包括类固醇反馈调节。本文通过对这些分类群的比较,总结了它们的机制差异,并根据目前的实验证据提出了一种进化设想。
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引用次数: 0
Fusion Pores as Regulators of Quantal Size and Cellular Physiology 融合孔作为量子大小和细胞生理的调节因子。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-07 DOI: 10.1002/bies.70064
Bhavya R. Bhaskar, Shahina Mazumdar, Sruthilaya Dayanandan, Debasis Das

The timely release of chemical messengers is a crucial step in cell-to-cell communication. Does this release occur as a passive diffusion from the donor membrane or it is actively regulated? A series of studies indicated that chemical messengers’ secretion is “sub-quantal”. This mode of secretion demands a strongly regulated release mechanism and calls for a thorough characterization of the release sites. When secretory vesicles fuse with the plasma membrane, ephemeral fusion pores serve as the first aqueous connection between the lumen of secretory vesicle and the cell exterior through which chemical messengers are released. Here, we discuss the molecular players that directly regulate fusion pore properties. This has consequences in controlling the amount of chemical messengers’ secretion, hence controlling the quantal size. A thorough understanding of the role of regulatory factors in controlling quantal size can help design potent therapeutics to alter vesicular secretion under pathological conditions.

及时释放化学信使是细胞间通讯的关键一步。这种释放是作为供体膜的被动扩散还是受到主动调节?一系列研究表明,化学信使的分泌是“亚量子”的。这种分泌模式需要一个强烈调节的释放机制,并要求对释放部位进行彻底的表征。当分泌囊泡与质膜融合时,短暂的融合孔作为分泌囊泡管腔与细胞外部的第一个水通道,化学信使通过该通道被释放。在这里,我们讨论了直接调节融合孔性质的分子参与者。这就控制了化学信使的分泌量,从而控制了量子大小。彻底了解调控因子在控制量大小中的作用可以帮助设计有效的治疗方法来改变病理条件下的水疱分泌。
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引用次数: 0
Shear Stress as a Danger Signal: Inducing Inflammation and Thrombosis via Mechanosensitive NETosis 剪切应力作为危险信号:通过机械敏感性NETosis诱导炎症和血栓形成。
IF 2.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-04 DOI: 10.1002/bies.70065
Sara Baratchi, Karlheinz Peter

Neutrophil extracellular traps (NETs)—web-like DNA structures extruded by neutrophils in response to various stimuli, including pathogens, sterile inflammation, and mechanical stress—play a dual role in immunity and disease. While NETs serve to trap and neutralize pathogens during host defense, excessive or dysregulated NET formation, known as NETosis, can amplify inflammation and contribute to thrombotic complications such as atherosclerosis and valve disease. Increasing evidence supports that NETosis is a regulated, signaling-driven process, and that mechanical forces—including shear stress, tensile force, and matrix stiffness—can act as noncanonical danger signals capable of inducing NETosis. Mechanosensitive ion channels such as Piezo1, have emerged as key transducers of these biophysical cues, enabling cells to convert changes in shear stress levels into intracellular calcium flux, cytoskeletal remodeling, and ultimately NET release. Furthermore, exposure to pathologically high levels of shear stress may improve the sensitivity of neutrophils to secondary stimuli, lowering their activation threshold and amplifying inflammatory and thrombotic cascades. This mechanosensitive framework highlights shear-induced NETosis as a critical pathway by which neutrophils contribute to inflammation and thrombosis in mechanically stressed vascular environments.

中性粒细胞胞外陷阱(NETs)是中性粒细胞在各种刺激下(包括病原体、无菌炎症和机械应力)挤压出的网状DNA结构,在免疫和疾病中发挥双重作用。虽然NET在宿主防御过程中起到捕获和中和病原体的作用,但过度或失调的NET形成(称为NETosis)可放大炎症并导致血栓性并发症,如动脉粥样硬化和瓣膜疾病。越来越多的证据支持NETosis是一个受调控的、信号驱动的过程,而机械力——包括剪切应力、拉伸力和基质刚度——可以作为能够诱发NETosis的非规范危险信号。机械敏感离子通道(如Piezo1)已成为这些生物物理信号的关键换能器,使细胞能够将剪切应力水平的变化转化为细胞内钙通量、细胞骨架重塑和最终的NET释放。此外,暴露于病理性高水平的剪切应力可能会提高中性粒细胞对次级刺激的敏感性,降低它们的激活阈值,放大炎症和血栓级联反应。这种机械敏感性框架强调了剪切诱导的NETosis是中性粒细胞在机械应力血管环境中促进炎症和血栓形成的关键途径。
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