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Can stable introns and noncoding RNAs be harnessed to improve health through activation of mitohormesis? 能否利用稳定的内含子和非编码 RNA,通过激活有丝分裂来改善健康?
IF 4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-20 DOI: 10.1002/bies.202400143
Seow Neng Chan, Jun Wei Pek
Ever since their introduction a decade ago, stable introns, a type of noncoding (nc)RNAs, are found to be key players in different important cellular processes acting through regulation of gene expression and feedback loops to maintain cellular homeostasis. Despite being commonly regarded as useless byproducts, recent studies in yeast suggested that stable introns are essential for cell survivability under starvation. In Drosophila, we found that a stable intron, sisR-1, has a direct effect in regulating mitochondrial dynamics during short-term fasting and subsequently improved overall oocyte quality. We speculated that the beneficial effects implicated by sisR-1 is through the activation of mitohormesis, an interesting phenomenon in mitochondrial biology. Mitohormesis is suggested to improve health span and lifespan of cells and organisms, but the involvement of ncRNAs is not well-documented. Here, we discuss the potential role of sisR-1 and other ncRNAs in activating mitohormesis and the possible applications in improving cellular and organismal health.
稳定内含子是一种非编码(nc)RNA,自十年前被提出以来,人们发现它们在不同的重要细胞过程中发挥着关键作用,通过调控基因表达和反馈环路来维持细胞的平衡。尽管内含子通常被认为是无用的副产品,但最近在酵母中的研究表明,稳定的内含子对细胞在饥饿状态下的存活至关重要。在果蝇中,我们发现稳定的内含子 sisR-1 在短期禁食期间对线粒体动力学有直接的调节作用,并随后改善了卵母细胞的整体质量。我们推测,sisR-1 的有益作用是通过激活线粒体生物学中一个有趣的现象--有丝分裂。有研究表明,有丝分裂可改善细胞和生物体的健康状况和寿命,但 ncRNAs 的参与尚未得到充分证实。在这里,我们将讨论 sisR-1 和其他 ncRNA 在激活线粒体发生过程中的潜在作用,以及在改善细胞和生物体健康方面的可能应用。
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引用次数: 0
Linking secretion and cytoskeleton in immunity– a case for Arabidopsis TGNap1 将免疫中的分泌和细胞骨架联系起来--拟南芥 TGNap1 的一个案例
IF 4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-20 DOI: 10.1002/bies.202400150
Deepak D. Bhandari, Federica Brandizzi
In plants, robust defense depends on the efficient and resilient trafficking supply chains to the site of pathogen attack. Though the importance of intracellular trafficking in plant immunity has been well established, a lack of clarity remains regarding the contribution of the various trafficking pathways in transporting immune-related proteins. We have recently identified a trans-Golgi network protein, TGN-ASSOCIATED PROTEIN 1 (TGNap1), which functionally links post-Golgi vesicles with the cytoskeleton to transport immunity-related proteins in the model plant species Arabidopsis thaliana. We propose new hypotheses on the various functional implications of TGNap1 and then elaborate on the surprising heterogeneity of TGN vesicles during immunity revealed by the discovery of TGNap1 and other TGN-associated proteins in recent years.
在植物中,强大的防御能力取决于将供应链高效、灵活地运送到病原体攻击地点。虽然细胞内运输在植物免疫中的重要性已得到充分证实,但各种运输途径在运输免疫相关蛋白方面的贡献仍不明确。我们最近发现了一种跨高尔基体网络蛋白--TGN-ASSOCIATED PROTEIN 1(TGNap1),它在功能上将高尔基体后囊泡与细胞骨架连接起来,从而在模式植物拟南芥中运输免疫相关蛋白。我们就 TGNap1 的各种功能意义提出了新的假设,然后阐述了近年来发现的 TGNap1 和其他 TGN 相关蛋白所揭示的免疫过程中 TGN 囊泡的惊人异质性。
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引用次数: 0
Cytoskeletal mechanisms regulating attaching/effacing bacteria interactions with host cells: It takes a village to build the pedestal 调节附着/脱离细菌与宿主细胞相互作用的细胞骨架机制:建造基座需要一个村庄
IF 4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-20 DOI: 10.1002/bies.202400160
Nayden G. Naydenov, Armando Marino-Melendez, Kenneth G. Campellone, Andrei I. Ivanov
The actin cytoskeleton is a key cellular structure subverted by pathogens to infect and survive in or on host cells. Several pathogenic strains of Escherichia coli, such as enteropathogenic E. coli (EPEC) and enterohemorrhagic E. coli (EHEC), developed a unique mechanism to remodel the actin cytoskeleton that involves the assembly of actin filament-rich pedestals beneath the bacterial attachment sites. Actin pedestal assembly is driven by bacterial effectors injected into the host cells, and this structure is important for EPEC and EHEC colonization. While the interplay between bacterial effectors and the actin polymerization machinery of host cells is well-understood, how other mechanisms of actin filament remodelling regulate pedestal assembly and bacterial attachment are poorly investigated. This review discusses the gaps in our understanding of the complexity of the actin cytoskeletal remodelling during EPEC and EHEC infection. We describe possible roles of actin depolymerizing, crosslinking and motor proteins in pedestal dynamics, and bacterial interactions with the host cells. We also discuss the biological significance of pedestal assembly for bacterial infection.
肌动蛋白细胞骨架是一种关键的细胞结构,病原体可利用它来感染宿主细胞,并在宿主细胞内或宿主细胞上存活。肠致病性大肠杆菌(EPEC)和肠出血性大肠杆菌(EHEC)等几种致病性大肠杆菌菌株发展出一种重塑肌动蛋白细胞骨架的独特机制,其中包括在细菌附着点下方组装富含肌动蛋白丝的基座。肌动蛋白基座的组装是由注入宿主细胞的细菌效应物驱动的,这种结构对 EPEC 和 EHEC 的定殖非常重要。虽然细菌效应物与宿主细胞肌动蛋白聚合机制之间的相互作用已广为人知,但对肌动蛋白丝重塑的其他机制如何调节基座组装和细菌附着的研究却很少。本综述讨论了我们对 EPEC 和 EHEC 感染过程中肌动蛋白细胞骨架重塑复杂性的认识差距。我们描述了肌动蛋白解聚、交联和马达蛋白在基座动力学以及细菌与宿主细胞相互作用中可能发挥的作用。我们还讨论了基座组装对细菌感染的生物学意义。
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引用次数: 0
Compartmentalized signaling in the soma: Coordination of electrical and protein kinase A signaling at neuronal ER‐plasma membrane junctions 体节中的区隔化信号传导:神经元ER-质膜连接处的电信号和蛋白激酶A信号的协调
IF 4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-13 DOI: 10.1002/bies.202400126
Nicholas C. Vierra
Neuronal information processing depends on converting membrane depolarizations into compartmentalized biochemical signals that can modify neuronal activity and structure. However, our understanding of how neurons translate electrical signals into specific biochemical responses remains limited, especially in the soma where gene expression and ion channel function are crucial for neuronal activity. Here, I emphasize the importance of physically compartmentalizing action potential‐triggered biochemical reactions within the soma. Emerging evidence suggests that somatic endoplasmic reticulum–plasma membrane (ER‐PM) junctions are specialized organelles that coordinate electrical and biochemical signaling. The juxtaposition of ion channels and signaling proteins at a prominent subset of these sites enables compartmentalized calcium and cAMP‐dependent protein kinase (PKA) signaling. I explore the hypothesis that these PKA‐containing ER‐PM junctions serve as critical sites for translating membrane depolarizations into PKA signals and identify key gaps in knowledge of the assembly, regulation, and neurobiological functions of this somatic signaling system.
神经元的信息处理依赖于将膜去极化转化为可改变神经元活动和结构的分区生化信号。然而,我们对神经元如何将电信号转化为特定生化反应的了解仍然有限,尤其是在对神经元活动至关重要的体部,基因表达和离子通道功能更是如此。在这里,我强调了将动作电位触发的生化反应在体细胞内进行物理区隔的重要性。新近的证据表明,体细胞内质网-质膜(ER-PM)连接是协调电信号和生化信号的特殊细胞器。离子通道和信号蛋白并置在这些连接点的一个重要子集上,使得钙离子和 cAMP 依赖性蛋白激酶(PKA)信号能够分区传递。我探讨的假设是,这些含有 PKA 的 ER-PM 连接点是将膜去极化转化为 PKA 信号的关键位置,并找出了这一体细胞信号系统的组装、调节和神经生物学功能方面的关键知识空白。
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引用次数: 0
Health‐promoting worms? Prospects and pitfalls of helminth therapy 促进健康的蠕虫?蠕虫疗法的前景与陷阱
IF 4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-12 DOI: 10.1002/bies.202400080
Ingrid Lamminpää, Federico Boem, Amedeo Amedei
In this manuscript, we explore the potential therapeutic use of helminths. After analyzing helminths’ role in connection with human health from the perspective of their symbiotic and evolutionary relationship, we critically examine some studies on their therapeutic applications. In doing so, we focus on some prominent mechanisms of action and potential benefits, but also on the exaggerations and theoretical and methodological difficulties of such proposals. We conclude that further studies are needed to fully explore the potential benefits of this perspective, and we encourage the scientific community in doing so.
在本手稿中,我们探讨了螺旋虫的潜在治疗用途。在从共生和进化关系的角度分析蠕虫在人类健康中的作用后,我们对有关其治疗应用的一些研究进行了批判性审视。在此过程中,我们关注了一些突出的作用机制和潜在益处,同时也关注了这些建议的夸大之处以及理论和方法上的困难。我们的结论是,还需要进一步的研究来充分探索这一观点的潜在益处,并鼓励科学界这样做。
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引用次数: 0
Tissue-resident memory T cells: Harnessing their properties against infection for cancer treatment 组织驻留记忆 T 细胞:利用其抗感染特性治疗癌症
IF 4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-11 DOI: 10.1002/bies.202400119
João Fernandes, Marc Veldhoen, Cristina Ferreira
We have rapidly gained insights into the presence and function of T lymphocytes in non-lymphoid tissues, the tissue-resident memory T (TRM) cells. The central pillar of adaptive immunity has been expanded from classic central memory T cells giving rise to progeny upon reinfection and effector memory cells circulating through the blood and patrolling the tissues to include TRM cells that reside and migrate inside solid organs and tissues. Their development and maintenance have been studied in detail, providing exciting clues on how their unique properties used to fight infections may benefit therapies against solid tumors. We provide an overview of CD8 TRM cells and the properties that make them of interest for vaccination and cancer therapies.
我们对非淋巴组织中T淋巴细胞(组织驻留记忆T细胞(TRM))的存在和功能有了迅速深入的了解。适应性免疫的核心支柱已经从传统的再感染时产生后代的中心记忆 T 细胞和在血液中循环并在组织中巡逻的效应记忆细胞,扩展到包括在实体器官和组织中驻留和迁移的 TRM 细胞。我们对这些细胞的发育和维持进行了详细研究,并提供了令人兴奋的线索,说明这些细胞用于抗感染的独特特性如何有益于实体瘤疗法。我们将概述 CD8 TRM 细胞以及它们在疫苗接种和癌症疗法中的特性。
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引用次数: 0
The researcher's guide to selecting biomarkers in mental health studies 研究人员在心理健康研究中选择生物标记物指南
IF 3.2 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-11 DOI: 10.1002/bies.202300246
Josine E. Verhoeven, Owen M. Wolkowitz, Isaac Barr Satz, Quinn Conklin, Femke Lamers, Catharina Lavebratt, Jue Lin, Daniel Lindqvist, Stefanie E. Mayer, Philippe A. Melas, Yuri Milaneschi, Martin Picard, Ryan Rampersaud, Natalie Rasgon, Kathryn Ridout, Gustav Söderberg Veibäck, Caroline Trumpff, Audrey R. Tyrka, Kathleen Watson, Gwyneth Winnie Y. Wu, Ruoting Yang, Anthony S. Zannas, Laura K. M. Han, Kristoffer N. T. Månsson

Clinical mental health researchers may understandably struggle with how to incorporate biological assessments in clinical research. The options are numerous and are described in a vast and complex body of literature. Here we provide guidelines to assist mental health researchers seeking to include biological measures in their studies. Apart from a focus on behavioral outcomes as measured via interviews or questionnaires, we advocate for a focus on biological pathways in clinical trials and epidemiological studies that may help clarify pathophysiology and mechanisms of action, delineate biological subgroups of participants, mediate treatment effects, and inform personalized treatment strategies. With this paper we aim to bridge the gap between clinical and biological mental health research by (1) discussing the clinical relevance, measurement reliability, and feasibility of relevant peripheral biomarkers; (2) addressing five types of biological tissues, namely blood, saliva, urine, stool and hair; and (3) providing information on how to control sources of measurement variability.

临床心理健康研究人员可能会为如何将生物评估纳入临床研究而苦恼,这是可以理解的。可供选择的方法有很多,大量复杂的文献对此都有描述。在此,我们将提供相关指南,以帮助心理健康研究人员在其研究中纳入生物学评估。除了关注通过访谈或问卷测量的行为结果外,我们还提倡在临床试验和流行病学研究中关注生物途径,这有助于阐明病理生理学和作用机制,划分参与者的生物亚群,调节治疗效果,并为个性化治疗策略提供依据。本文旨在弥合临床与生物心理健康研究之间的差距,我们将(1)讨论相关外周生物标记物的临床相关性、测量可靠性和可行性;(2)讨论五种生物组织,即血液、唾液、尿液、粪便和毛发;(3)提供如何控制测量变异性来源的信息。
{"title":"The researcher's guide to selecting biomarkers in mental health studies","authors":"Josine E. Verhoeven,&nbsp;Owen M. Wolkowitz,&nbsp;Isaac Barr Satz,&nbsp;Quinn Conklin,&nbsp;Femke Lamers,&nbsp;Catharina Lavebratt,&nbsp;Jue Lin,&nbsp;Daniel Lindqvist,&nbsp;Stefanie E. Mayer,&nbsp;Philippe A. Melas,&nbsp;Yuri Milaneschi,&nbsp;Martin Picard,&nbsp;Ryan Rampersaud,&nbsp;Natalie Rasgon,&nbsp;Kathryn Ridout,&nbsp;Gustav Söderberg Veibäck,&nbsp;Caroline Trumpff,&nbsp;Audrey R. Tyrka,&nbsp;Kathleen Watson,&nbsp;Gwyneth Winnie Y. Wu,&nbsp;Ruoting Yang,&nbsp;Anthony S. Zannas,&nbsp;Laura K. M. Han,&nbsp;Kristoffer N. T. Månsson","doi":"10.1002/bies.202300246","DOIUrl":"10.1002/bies.202300246","url":null,"abstract":"<p>Clinical mental health researchers may understandably struggle with how to incorporate biological assessments in clinical research. The options are numerous and are described in a vast and complex body of literature. Here we provide guidelines to assist mental health researchers seeking to include biological measures in their studies. Apart from a focus on behavioral outcomes as measured via interviews or questionnaires, we advocate for a focus on biological pathways in clinical trials and epidemiological studies that may help clarify pathophysiology and mechanisms of action, delineate biological subgroups of participants, mediate treatment effects, and inform personalized treatment strategies. With this paper we aim to bridge the gap between clinical and biological mental health research by (1) discussing the clinical relevance, measurement reliability, and feasibility of relevant peripheral biomarkers; (2) addressing five types of biological tissues, namely blood, saliva, urine, stool and hair; and (3) providing information on how to control sources of measurement variability.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bies.202300246","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142208411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Beyond RNAi: How the Dicer protein modulates the antiviral innate immune response in mammalian cells: Mammalian Dicer could regulate the innate immune response in an RNAi-independent manner as a result of losing long dsRNA processive activity. 超越 RNAi:Dicer 蛋白如何调节哺乳动物细胞的抗病毒先天免疫反应:哺乳动物的 Dicer 由于失去了长 dsRNA 的加工活性,因此可以不依赖 RNAi 的方式调节先天性免疫反应。
IF 3.2 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-09 DOI: 10.1002/bies.202400173
Léa Gaucherand, Morgane Baldaccini, Sébastien Pfeffer

While Dicer plays an important antiviral role through the RNAi pathway in plants and invertebrates, its contribution to antiviral immunity in vertebrates and more specifically mammals is more controversial. The apparent limited RNAi activity in mammalian cells has been attributed to the reduced long dsRNA processive activity of mammalian Dicer, as well as a functional incompatibility between the RNAi and IFN pathways. Why Dicer has lost this antiviral activity in the profit of the IFN pathway is still unclear. We propose that the primary direct antiviral activity of Dicer has been functionally replaced by other sensors in the IFN pathway, leading to its specialization toward microRNA maturation. As a result, Dicer can regulate the innate immune response and prevent basal activation of the IFN pathway in mammals. Here, we discuss this hypothesis, highlighting how the adaptation of the helicase domain of mammalian Dicer may be key to this process.

虽然 Dicer 通过 RNAi 途径在植物和无脊椎动物中发挥着重要的抗病毒作用,但它对脊椎动物,特别是哺乳动物抗病毒免疫的贡献却存在更多争议。哺乳动物细胞中明显有限的 RNAi 活性被归因于哺乳动物 Dicer 的长 dsRNA 处理活性降低,以及 RNAi 和 IFN 途径之间的功能不相容。目前还不清楚为什么 Dicer 在 IFN 途径获利的情况下失去了这种抗病毒活性。我们认为,Dicer 的主要直接抗病毒活性在功能上已被 IFN 途径中的其他传感器所取代,导致其专门用于 microRNA 的成熟。因此,Dicer 可以调节先天性免疫反应,阻止哺乳动物 IFN 通路的基础激活。在这里,我们讨论了这一假设,强调了哺乳动物 Dicer 螺旋酶结构域的适应可能是这一过程的关键。
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引用次数: 0
Research progress on plant stress-associated protein (SAP) family: Master regulators to deal with environmental stresses. 植物胁迫相关蛋白(SAP)家族的研究进展:应对环境胁迫的主调节因子
IF 3.2 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-09 DOI: 10.1002/bies.202400097
Rania Ben Saad, Walid Ben Romdhane, Natália Čmiková, Narjes Baazaoui, Mohamed Taieb Bouteraa, Bouthaina Ben Akacha, Yosra Chouaibi, Maria Maisto, Anis Ben Hsouna, Stefania Garzoli, Alina Wiszniewska, Miroslava Kačániová

Every year, unfavorable environmental factors significantly affect crop productivity and threaten food security. Plants are sessile; they cannot move to escape unfavorable environmental conditions, and therefore, they activate a variety of defense pathways. Among them are processes regulated by stress-associated proteins (SAPs). SAPs have a specific zinc finger domain (A20) at the N-terminus and either AN1 or C2H2 at the C-terminus. SAP proteins are involved in many biological processes and in response to various abiotic or biotic constraints. Most SAPs play a role in conferring transgenic stress resistance and are stress-inducible. The emerging field of SAPs in abiotic or biotic stress response regulation has attracted the attention of researchers. Although SAPs interact with various proteins to perform their functions, the exact mechanisms of these interactions remain incompletely understood. This review aims to provide a comprehensive understanding of SAPs, covering their diversity, structure, expression, and subcellular localization. SAPs play a pivotal role in enabling crosstalk between abiotic and biotic stress signaling pathways, making them essential for developing stress-tolerant crops without yield penalties. Collectively, understanding the complex regulation of SAPs in stress responses can contribute to enhancing tolerance against various environmental stresses through several techniques such as transgenesis, classical breeding, or gene editing.

每年,不利的环境因素都会严重影响作物产量,威胁粮食安全。植物是无柄的,它们无法移动以躲避不利的环境条件,因此,它们会激活各种防御途径。其中包括由胁迫相关蛋白(SAP)调控的过程。SAP 蛋白的 N 端有一个特定的锌指结构域(A20),C 端有 AN1 或 C2H2。SAP 蛋白参与了许多生物过程,并对各种非生物或生物限制做出反应。大多数 SAP 蛋白在赋予转基因抗逆性方面发挥作用,并且具有应激诱导性。SAPs 在非生物或生物应激反应调控中的新兴领域吸引了研究人员的注意。尽管SAPs与各种蛋白质相互作用以发挥其功能,但人们对这些相互作用的确切机制仍然知之甚少。本综述旨在全面介绍 SAPs,包括其多样性、结构、表达和亚细胞定位。SAPs 在非生物胁迫和生物胁迫信号通路之间的串联中发挥着关键作用,因此对于开发抗胁迫而不影响产量的作物至关重要。总之,了解 SAPs 在胁迫响应中的复杂调控有助于通过转基因、经典育种或基因编辑等多种技术提高作物对各种环境胁迫的耐受性。
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引用次数: 0
Dangerous liaisons: Loss of keratinocyte control over melanocytes in melanomagenesis. 危险的联系黑色素瘤形成过程中角质细胞失去对黑色素细胞的控制。
IF 3.2 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-04 DOI: 10.1002/bies.202400135
Kathleen J Green, Jenny Pokorny, Brieanna Jarrell

Melanomas arise from transformed melanocytes, positioned at the dermal-epidermal junction in the basal layer of the epidermis. Melanocytes are completely surrounded by keratinocyte neighbors, with which they communicate through direct contact and paracrine signaling to maintain normal growth control and homeostasis. UV radiation from sunlight reshapes this communication network to drive a protective tanning response. However, repeated rounds of sun exposure result in accumulation of mutations in melanocytes that have been considered as primary drivers of melanoma initiation and progression. It is now clear that mutations in melanocytes are not sufficient to drive tumor formation-the tumor environment plays a critical role. This review focuses on changes in melanocyte-keratinocyte communication that contribute to melanoma initiation and progression, with a particular focus on recent mechanistic insights that lay a foundation for developing new ways to intercept melanoma development.

黑色素瘤产生于转化的黑色素细胞,它们位于表皮基底层的真皮-表皮交界处。黑色素细胞完全被邻近的角质细胞包围,它们通过直接接触和旁分泌信号与角质细胞沟通,以维持正常的生长控制和平衡。阳光中的紫外线辐射重塑了这一交流网络,以驱动保护性晒黑反应。然而,反复的日光照射会导致黑色素细胞中突变的积累,而这些突变一直被认为是黑色素瘤发生和发展的主要驱动因素。现在很清楚,黑色素细胞的突变不足以驱动肿瘤的形成,肿瘤环境起着至关重要的作用。这篇综述将重点讨论黑色素细胞与角质形成细胞之间的交流变化对黑色素瘤的发生和发展所起的作用,尤其关注最新的机理认识,这些认识为开发新的方法来阻止黑色素瘤的发展奠定了基础。
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引用次数: 0
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