Pub Date : 2023-10-10DOI: 10.1186/s43074-023-00113-4
Lucas Kreiss, Shaowei Jiang, Xiang Li, Shiqi Xu, Kevin C. Zhou, Kyung Chul Lee, Alexander Mühlberg, Kanghyun Kim, Amey Chaware, Michael Ando, Laura Barisoni, Seung Ah Lee, Guoan Zheng, Kyle J. Lafata, Oliver Friedrich, Roarke Horstmeyer
Abstract Until recently, conventional biochemical staining had the undisputed status as well-established benchmark for most biomedical problems related to clinical diagnostics, fundamental research and biotechnology. Despite this role as gold-standard, staining protocols face several challenges, such as a need for extensive, manual processing of samples, substantial time delays, altered tissue homeostasis, limited choice of contrast agents, 2D imaging instead of 3D tomography and many more. Label-free optical technologies, on the other hand, do not rely on exogenous and artificial markers, by exploiting intrinsic optical contrast mechanisms, where the specificity is typically less obvious to the human observer. Over the past few years, digital staining has emerged as a promising concept to use modern deep learning for the translation from optical contrast to established biochemical contrast of actual stainings. In this review article, we provide an in-depth analysis of the current state-of-the-art in this field, suggest methods of good practice, identify pitfalls and challenges and postulate promising advances towards potential future implementations and applications.
{"title":"Digital staining in optical microscopy using deep learning - a review","authors":"Lucas Kreiss, Shaowei Jiang, Xiang Li, Shiqi Xu, Kevin C. Zhou, Kyung Chul Lee, Alexander Mühlberg, Kanghyun Kim, Amey Chaware, Michael Ando, Laura Barisoni, Seung Ah Lee, Guoan Zheng, Kyle J. Lafata, Oliver Friedrich, Roarke Horstmeyer","doi":"10.1186/s43074-023-00113-4","DOIUrl":"https://doi.org/10.1186/s43074-023-00113-4","url":null,"abstract":"Abstract Until recently, conventional biochemical staining had the undisputed status as well-established benchmark for most biomedical problems related to clinical diagnostics, fundamental research and biotechnology. Despite this role as gold-standard, staining protocols face several challenges, such as a need for extensive, manual processing of samples, substantial time delays, altered tissue homeostasis, limited choice of contrast agents, 2D imaging instead of 3D tomography and many more. Label-free optical technologies, on the other hand, do not rely on exogenous and artificial markers, by exploiting intrinsic optical contrast mechanisms, where the specificity is typically less obvious to the human observer. Over the past few years, digital staining has emerged as a promising concept to use modern deep learning for the translation from optical contrast to established biochemical contrast of actual stainings. In this review article, we provide an in-depth analysis of the current state-of-the-art in this field, suggest methods of good practice, identify pitfalls and challenges and postulate promising advances towards potential future implementations and applications.","PeriodicalId":93483,"journal":{"name":"PhotoniX","volume":"109 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136295308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Abstract Replica symmetry breaking (RSB), as a featured phase transition between paramagnetic and spin glass state in magnetic systems, has been predicted and validated among random laser-based complex systems, which involves numerous random modes interplayed via gain competition and exhibits disorder-induced frustration for glass behavior. However, the dynamics of RSB phase transition involving micro-state evolution of a photonic complex system have never been well investigated. Here, we report experimental evidence of transient RSB in a Brillouin random fiber laser (BRFL)-based photonic system through high-resolution unveiling of random laser mode landscape based on heterodyne technique. Thanks to the prolonged lifetime of activated random modes in BRFLs, an elaborated mapping of time-dependent statistics of the Parisi overlap parameter in both time and frequency domains was timely resolved, attributing to a compelling analogy between the transient RSB dynamics and the random mode evolution. These findings highlight that BRFL-based systems with the flexible harness of a customized photonic complex platform allow a superb opportunity for time-resolved transient RSB observation, opening new avenues in exploring fundamentals and application of complex systems and nonlinear phenomena.
{"title":"Transient replica symmetry breaking in Brillouin random fiber lasers","authors":"Liang Zhang, Jilin Zhang, Fufei Pang, Tingyun Wang, Liang Chen, Xiaoyi Bao","doi":"10.1186/s43074-023-00107-2","DOIUrl":"https://doi.org/10.1186/s43074-023-00107-2","url":null,"abstract":"Abstract Replica symmetry breaking (RSB), as a featured phase transition between paramagnetic and spin glass state in magnetic systems, has been predicted and validated among random laser-based complex systems, which involves numerous random modes interplayed via gain competition and exhibits disorder-induced frustration for glass behavior. However, the dynamics of RSB phase transition involving micro-state evolution of a photonic complex system have never been well investigated. Here, we report experimental evidence of transient RSB in a Brillouin random fiber laser (BRFL)-based photonic system through high-resolution unveiling of random laser mode landscape based on heterodyne technique. Thanks to the prolonged lifetime of activated random modes in BRFLs, an elaborated mapping of time-dependent statistics of the Parisi overlap parameter in both time and frequency domains was timely resolved, attributing to a compelling analogy between the transient RSB dynamics and the random mode evolution. These findings highlight that BRFL-based systems with the flexible harness of a customized photonic complex platform allow a superb opportunity for time-resolved transient RSB observation, opening new avenues in exploring fundamentals and application of complex systems and nonlinear phenomena.","PeriodicalId":93483,"journal":{"name":"PhotoniX","volume":"14 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135096003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-05DOI: 10.1186/s43074-023-00106-3
Jiyong Wang, Lei Zhang, Min Qiu
Abstract The study on the nonlinear optical responses arising from plasmonic nanoantennas, known as nonlinear plasmonics, has been massively investigated in recent years. Among the most basic nonlinear optical responses, second-harmonic generation (SHG) and multiphoton photoluminescence (MPL), two-photon photoluminescence in particular, has aroused extensive interests, due to their distinct properties of being ultrasensitive to the spatial symmetry and ultrafast response time of hot electrons. In this review, we give insights into fundamental roles dominating the radiations of such nonlinear optical processes and their recent research advances. Different from other reviews on nonlinear plasmonics, which mainly focused on parametric processes, this review pays equal attentions to the incoherent process of MPL. An in-depth description on the excitation and emission processes of MPL in accordance with recent studies is fully presented. By using the high ‘symmetry rule’ of SHG and ultrafast response time of MPL, advanced applications in surface enhanced spectroscopy, ultra-sensitive photodetector, biosensor and ultrafast laser pulses are highlighted in the end.
{"title":"Nonlinear plasmonics: second-harmonic generation and multiphoton photoluminescence","authors":"Jiyong Wang, Lei Zhang, Min Qiu","doi":"10.1186/s43074-023-00106-3","DOIUrl":"https://doi.org/10.1186/s43074-023-00106-3","url":null,"abstract":"Abstract The study on the nonlinear optical responses arising from plasmonic nanoantennas, known as nonlinear plasmonics, has been massively investigated in recent years. Among the most basic nonlinear optical responses, second-harmonic generation (SHG) and multiphoton photoluminescence (MPL), two-photon photoluminescence in particular, has aroused extensive interests, due to their distinct properties of being ultrasensitive to the spatial symmetry and ultrafast response time of hot electrons. In this review, we give insights into fundamental roles dominating the radiations of such nonlinear optical processes and their recent research advances. Different from other reviews on nonlinear plasmonics, which mainly focused on parametric processes, this review pays equal attentions to the incoherent process of MPL. An in-depth description on the excitation and emission processes of MPL in accordance with recent studies is fully presented. By using the high ‘symmetry rule’ of SHG and ultrafast response time of MPL, advanced applications in surface enhanced spectroscopy, ultra-sensitive photodetector, biosensor and ultrafast laser pulses are highlighted in the end.","PeriodicalId":93483,"journal":{"name":"PhotoniX","volume":"10 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134975841","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-21DOI: 10.1186/s43074-023-00105-4
Adam Raptakis, Lefteris Gounaridis, Jörn P. Epping, Thi Lan Anh Tran, Thomas Aukes, Moritz Kleinert, Madeleine Weigel, Marco Wolfer, Alexander Draebenstedt, Christos Tsokos, Panos Groumas, Efstathios Andrianopoulos, Nikos Lyras, Dimitrios Nikolaidis, Elias Mylonas, Nikolaos Baxevanakis, Roberto Pessina, Erik Schreuder, Matthijn Dekkers, Volker Seyfried, Norbert Keil, René G. Heideman, Hercules Avramopoulos, Christos Kouloumentas
Abstract We demonstrate a compact heterodyne Laser Doppler Vibrometer (LDV) based on the realization of optical frequency shift in the silicon nitride photonic integration platform (TriPleX). We theoretically study, and experimentally evaluate two different photonic integrated optical frequency shifters (OFSs), utilizing serrodyne and single-sideband (SSB) modulation. Both OFSs employ stress-optic modulators (SOMs) based on the non-resonant piezoelectrical actuation of lead zirconate titanate (PZT) thin-films, deposited on top of the silicon nitride waveguides with a wafer-scale process. To improve the modulation bandwidth of the SOMs we investigate a novel configuration of the electrodes used for the actuation, where both electrodes are placed on top of the PZT layer. Using this top-top electrode configuration we report frequency shift of 100 kHz and 2.5 MHz, and suppression ratio of the unwanted sidebands of 22.1 dB and 39 dB, using the serrodyne and the SSB OFS, respectively. The best performing SOM structure induces 0.25π peak-to-peak sinusoidal phase-shift with 156 mW power dissipation at 2.5 MHz. We use the SSB-OFS in our compact LDV system to demonstrate vibration measurements in the kHz regime. The system comprises a dual-polarization coherent detector built in the PolyBoard platform, utilizing hybrid integration of InP photodiodes (PDs). High quality LDV performance with measurement of vibration frequencies up to several hundreds of kHz and displacement resolution of 10 pm are supported with our system.
{"title":"Integrated heterodyne laser Doppler vibrometer based on stress-optic frequency shift in silicon nitride","authors":"Adam Raptakis, Lefteris Gounaridis, Jörn P. Epping, Thi Lan Anh Tran, Thomas Aukes, Moritz Kleinert, Madeleine Weigel, Marco Wolfer, Alexander Draebenstedt, Christos Tsokos, Panos Groumas, Efstathios Andrianopoulos, Nikos Lyras, Dimitrios Nikolaidis, Elias Mylonas, Nikolaos Baxevanakis, Roberto Pessina, Erik Schreuder, Matthijn Dekkers, Volker Seyfried, Norbert Keil, René G. Heideman, Hercules Avramopoulos, Christos Kouloumentas","doi":"10.1186/s43074-023-00105-4","DOIUrl":"https://doi.org/10.1186/s43074-023-00105-4","url":null,"abstract":"Abstract We demonstrate a compact heterodyne Laser Doppler Vibrometer (LDV) based on the realization of optical frequency shift in the silicon nitride photonic integration platform (TriPleX). We theoretically study, and experimentally evaluate two different photonic integrated optical frequency shifters (OFSs), utilizing serrodyne and single-sideband (SSB) modulation. Both OFSs employ stress-optic modulators (SOMs) based on the non-resonant piezoelectrical actuation of lead zirconate titanate (PZT) thin-films, deposited on top of the silicon nitride waveguides with a wafer-scale process. To improve the modulation bandwidth of the SOMs we investigate a novel configuration of the electrodes used for the actuation, where both electrodes are placed on top of the PZT layer. Using this top-top electrode configuration we report frequency shift of 100 kHz and 2.5 MHz, and suppression ratio of the unwanted sidebands of 22.1 dB and 39 dB, using the serrodyne and the SSB OFS, respectively. The best performing SOM structure induces 0.25π peak-to-peak sinusoidal phase-shift with 156 mW power dissipation at 2.5 MHz. We use the SSB-OFS in our compact LDV system to demonstrate vibration measurements in the kHz regime. The system comprises a dual-polarization coherent detector built in the PolyBoard platform, utilizing hybrid integration of InP photodiodes (PDs). High quality LDV performance with measurement of vibration frequencies up to several hundreds of kHz and displacement resolution of 10 pm are supported with our system.","PeriodicalId":93483,"journal":{"name":"PhotoniX","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136236214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-20DOI: 10.1186/s43074-023-00109-0
Ang Li, Chang Wang, Feixia Bao, Wenji Fang, Yuxin Liang, Rui Cheng, Shilong Pan
Abstract There has been a rapidly growing demand for low-cost, integrated single-shot spectrometers to be embedded in portable intelligent devices. Even though significant progress has been made in this area, two major problems are still remaining, namely the high temperature sensitivity and poor bandwidth-resolution ratio (BRR) that can’t meet the requirement of most applications. In this work, we present an integrated single-shot spectrometer relying on a silicon photonic circuit that has a footprint less than 3mm 2 , but could achieve broad operation bandwidth about 100 nm and high resolution up to 0.1 nm (with a BRR ~ 1000). Moreover, for the first time, we demonstrate an integrated spectrometer that could operate within a wide temperature range (between 10 and 70 degrees Celsius) without additional power consumption for temperature management.
{"title":"An integrated single-shot spectrometer with large bandwidth-resolution ratio and wide operation temperature range","authors":"Ang Li, Chang Wang, Feixia Bao, Wenji Fang, Yuxin Liang, Rui Cheng, Shilong Pan","doi":"10.1186/s43074-023-00109-0","DOIUrl":"https://doi.org/10.1186/s43074-023-00109-0","url":null,"abstract":"Abstract There has been a rapidly growing demand for low-cost, integrated single-shot spectrometers to be embedded in portable intelligent devices. Even though significant progress has been made in this area, two major problems are still remaining, namely the high temperature sensitivity and poor bandwidth-resolution ratio (BRR) that can’t meet the requirement of most applications. In this work, we present an integrated single-shot spectrometer relying on a silicon photonic circuit that has a footprint less than 3mm 2 , but could achieve broad operation bandwidth about 100 nm and high resolution up to 0.1 nm (with a BRR ~ 1000). Moreover, for the first time, we demonstrate an integrated spectrometer that could operate within a wide temperature range (between 10 and 70 degrees Celsius) without additional power consumption for temperature management.","PeriodicalId":93483,"journal":{"name":"PhotoniX","volume":"33 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136265896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-19DOI: 10.1186/s43074-023-00108-1
Jiaming Lv, Shengyuan Shen, Lin Chen, Yiming Zhu, Songlin Zhuang
Abstract Chiral enantiomers have different pharmacological and pharmacokinetic characteristics. It is important to strictly detect chiral component for avoiding being harmful to the human body due to side effects. Terahertz (THz) trace fingerprint detection is essential because the molecular vibrations of various biological substances such as chiral enantiomers are located in THz range. Recent reported enhanced trace fingerprint technologies have some drawbacks. For instance, multiplexing technology suffered from narrow operation range and limitation by frequency resolution of commercial THz time domain spectroscopy; Absorption induced transparency (AIT) identification for narrowband molecular oscillations suffered from random resonance frequency drift due to fabrication error. In this paper, we proposed frequency-selective fingerprint sensor (FSFS), which can experimentally achieve enhanced trace fingerprint detection by both broadband multiplexing technology and robust AIT identification. Such FSFS is based on polarization independent reconfiguration metasurfaces array. Broadband absorption lines of trace-amount chiral carnitine were boosted with absorption enhancement factors of about 7.3 times based on frequency-selective multiplexing at 0.95–2.0 THz. Enhanced trace narrowband α-lactose fingerprint sensing can be observed at several array structures with absorption enhancement factors of about 7 times based on AIT, exhibiting good robustness. The flexibility and versatility of proposed FSFS has potential applications for boosting trace chiral enantiomer detection as well as diversity of molecular fingerprints identification by both multiplexing and AIT.
{"title":"Frequency selective fingerprint sensor: the Terahertz unity platform for broadband chiral enantiomers multiplexed signals and narrowband molecular AIT enhancement","authors":"Jiaming Lv, Shengyuan Shen, Lin Chen, Yiming Zhu, Songlin Zhuang","doi":"10.1186/s43074-023-00108-1","DOIUrl":"https://doi.org/10.1186/s43074-023-00108-1","url":null,"abstract":"Abstract Chiral enantiomers have different pharmacological and pharmacokinetic characteristics. It is important to strictly detect chiral component for avoiding being harmful to the human body due to side effects. Terahertz (THz) trace fingerprint detection is essential because the molecular vibrations of various biological substances such as chiral enantiomers are located in THz range. Recent reported enhanced trace fingerprint technologies have some drawbacks. For instance, multiplexing technology suffered from narrow operation range and limitation by frequency resolution of commercial THz time domain spectroscopy; Absorption induced transparency (AIT) identification for narrowband molecular oscillations suffered from random resonance frequency drift due to fabrication error. In this paper, we proposed frequency-selective fingerprint sensor (FSFS), which can experimentally achieve enhanced trace fingerprint detection by both broadband multiplexing technology and robust AIT identification. Such FSFS is based on polarization independent reconfiguration metasurfaces array. Broadband absorption lines of trace-amount chiral carnitine were boosted with absorption enhancement factors of about 7.3 times based on frequency-selective multiplexing at 0.95–2.0 THz. Enhanced trace narrowband α-lactose fingerprint sensing can be observed at several array structures with absorption enhancement factors of about 7 times based on AIT, exhibiting good robustness. The flexibility and versatility of proposed FSFS has potential applications for boosting trace chiral enantiomer detection as well as diversity of molecular fingerprints identification by both multiplexing and AIT.","PeriodicalId":93483,"journal":{"name":"PhotoniX","volume":"18 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135010753","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-08-28DOI: 10.1186/s43074-023-00103-6
Gwan-Il Lee, K. M. Jyothsna, Jonghoo Park, JaeDong Lee, V. Raghunathan, Hyunmin Kim
{"title":"Confocal nonlinear optical imaging on hexagonal boron nitride nanosheets","authors":"Gwan-Il Lee, K. M. Jyothsna, Jonghoo Park, JaeDong Lee, V. Raghunathan, Hyunmin Kim","doi":"10.1186/s43074-023-00103-6","DOIUrl":"https://doi.org/10.1186/s43074-023-00103-6","url":null,"abstract":"","PeriodicalId":93483,"journal":{"name":"PhotoniX","volume":" ","pages":"1-16"},"PeriodicalIF":0.0,"publicationDate":"2023-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47975032","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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