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Anti-Xa Activity Test Is Needed but Is Not Enough for Monitoring Fondaparinux Therapy Among Critically Ill Patients. 监测重症患者的磺达肝癸治疗需要抗 Xa 活性测试,但这还不够。
Pub Date : 2024-06-19 DOI: 10.5858/arpa.2023-0496-OA
Liqin Ling, Chaonan Liu, Xunbei Huang, Siqi Liu, Juan Liao, Jin Jia, Yang Fu, Jing Zhou

Context.—: Fondaparinux monitoring is not required among noncritically ill patients due to a predictable dose-response effect. However, this is debatable among critically ill patients, because fondaparinux bioavailability can be influenced by complicated medical conditions.

Objective.—: To investigate fondaparinux monitoring among the critically ill.

Design.—: Retrospective analysis of patients admitted in intensive care unit from February 2021 to December 2021, who received prophylactic fondaparinux and had anti-Xa activity tests.

Results.—: Of 156 anti-Xa values, 86 (55.1%) were within 0.10-0.50 μg/mL (the recommended prophylactic range), 38 (24.4%) were less than 0.10 μg/mL, 32 (20.5%) were greater than 0.50 μg/mL, demonstrating an unpredictable dose-response effect. Among 70 patients, thrombotic tendency was controlled in 32 (45.7%), thrombosis progressed in 22 (31.4%), bleeding events occurred in 16 (22.9%). Patients with progressed thrombosis had 17 of 54 (31.5%) anti-Xa less than 0.10 μg/mL, even though this proportion was greater than that of patients with controlled thrombotic tendency (11 of 72, 15.3%), it was similar to that of patients with bleeding (10 of 30, 33.3%), indicating a weak practicability of anti-Xa for monitoring fondaparinux efficacy. Thrombin-antithrombin complex showed a gradual decline among patients with controlled thrombotic tendency, but a bounce-back effect among patients with progressed thrombosis. Thrombelastography R value above the upper reference value occurred more frequently among patients with bleeding (4 of 6, 66.7%) compared to patients without bleeding (4 of 22, 18.2%) (P = .01).

Conclusions.—: The fondaparinux dose-response effect was unpredictable among the critically ill; anti-Xa activity combined with thrombin-antithrombin complex and thrombelastography can be helpful to guide a precise fondaparinux therapy in this population.

背景:非危重病人无需监测磺达肝癸,因为其剂量-反应效应可预测。然而,由于磺达肝癸钠的生物利用度会受到复杂病情的影响,这一点在重症患者中尚存争议:调查重症患者中的磺达肝癸监测情况:回顾性分析 2021 年 2 月至 2021 年 12 月期间入住重症监护病房、接受预防性磺达肝癸治疗并进行抗 Xa 活性检测的患者:在156个抗Xa值中,86个(55.1%)在0.10-0.50 μg/mL(推荐的预防范围)之内,38个(24.4%)小于0.10 μg/mL,32个(20.5%)大于0.50 μg/mL,显示出不可预测的剂量反应效应。在 70 例患者中,32 例(45.7%)血栓倾向得到控制,22 例(31.4%)血栓进展,16 例(22.9%)发生出血事件。血栓形成进展的患者 54 人中有 17 人(31.5%)的抗 Xa 小于 0.10 μg/mL,尽管这一比例高于血栓形成趋势得到控制的患者(72 人中有 11 人,15.3%),但与出血患者(30 人中有 10 人,33.3%)的比例相近,表明抗 Xa 在监测磺达肝癸钠疗效方面的实用性较弱。在血栓倾向得到控制的患者中,凝血酶-抗凝血酶复合物呈逐渐下降趋势,但在血栓形成进展的患者中,凝血酶-抗凝血酶复合物呈反弹效应。与没有出血的患者(22 例中有 4 例,占 18.2%)相比,出血患者(6 例中有 4 例,占 66.7%)的血栓弹力图 R 值高于参考值上限的频率更高(P = .01):在重症患者中,磺达肝癸钠的剂量-反应效应是不可预测的;抗Xa活性结合凝血酶-抗凝血酶复合物和血栓弹力图有助于指导该人群进行精确的磺达肝癸钠治疗。
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引用次数: 0
Insulinoma-Associated Protein-1 Expression in Lymphoepithelial Carcinoma of the Thymus: A Potential Pitfall for Diagnosis With Neuroendocrine Carcinomas of the Thymus. 胸腺淋巴上皮癌中胰岛素瘤相关蛋白-1的表达:胸腺神经内分泌癌诊断的潜在陷阱。
Pub Date : 2024-06-17 DOI: 10.5858/arpa.2024-0045-OA
David I Suster, A Craig Mackinnon, Saul Suster

Context.—: Insulinoma-associated protein-1 (INSM1) is a recently developed immunohistochemical marker claimed to be highly specific and sensitive for the diagnosis of neuroendocrine malignancies. Recent studies, however, have demonstrated that this marker can also be expressed in non-neuroendocrine neoplasms including squamous cell carcinoma of the thymus.

Objective.—: To examine INSM1 expression in lymphoepithelial thymic carcinomas.

Design.—: Thirty-four cases of lymphoepithelial carcinoma of the thymus were examined by immunohistochemistry or in situ hybridization for INSM1, synaptophysin, chromogranin, CD5, CD117, Epstein-Barr virus-encoded small ribonucleic acid (EBER), and Ki-67. Basic clinical information was abstracted from the medical record.

Results.—: The patients were 14 women and 20 men, aged 20 to 85 years. The tumors arose in the anterior mediastinum without any previous history or evidence of malignancy at other sites. Immunohistochemical staining showed moderate to strong positivity of the tumor cells for INSM1 in 65% of cases (22 of 34), focal weak positivity in 20% (7 of 34), and negative staining in 5 cases. Chromogranin staining was focally and weakly positive in 1 case, and synaptophysin showed only focal weak positivity in scattered tumor cells in 12 cases. No significant correlation could be identified between the pattern and intensity of staining for INSM1 and staining for CD5, CD117, and Ki-67.

Conclusions.—: INSM1 positivity in lymphoepithelial carcinoma of the thymus may represent a pitfall for diagnosis, particularly in small biopsy samples. Awareness of this finding may be of importance to avoid misdiagnosis of neuroendocrine malignancy.

背景胰岛素瘤相关蛋白-1(Insulinoma-associated protein-1,INSM1)是最近开发的一种免疫组化标记物,据称对神经内分泌恶性肿瘤的诊断具有高度特异性和敏感性。然而,最近的研究表明,这种标记物也可在非神经内分泌肿瘤(包括胸腺鳞状细胞癌)中表达:研究INSM1在淋巴上皮性胸腺癌中的表达:通过免疫组化或原位杂交法检测34例胸腺淋巴上皮癌中INSM1、突触素、嗜铬粒蛋白、CD5、CD117、Epstein-Barr病毒编码的小核糖核酸(EBER)和Ki-67的表达。基本临床信息摘自病历:患者中有 14 名女性和 20 名男性,年龄在 20 至 85 岁之间。肿瘤发生在前纵隔,既往无其他部位恶性肿瘤病史或证据。免疫组化染色显示,65%的病例(34 例中的 22 例)肿瘤细胞呈 INSM1 中度至高度阳性,20%(34 例中的 7 例)呈局灶性弱阳性,5 例呈阴性。1例患者的染色质呈局灶性弱阳性,12例患者的突触素仅在散在的肿瘤细胞中呈局灶性弱阳性。INSM1的染色模式和强度与CD5、CD117和Ki-67的染色之间没有明显的相关性:结论:胸腺淋巴上皮癌的 INSM1 阳性可能是诊断的一个陷阱,尤其是在小活检样本中。认识到这一发现对于避免误诊为神经内分泌恶性肿瘤非常重要。
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引用次数: 0
Advancing Diagnostic Accuracy and Quality of Patient Care Through the Implementation of a Flow Cytometry Quality Assurance Program. 通过实施流式细胞仪质量保证计划,提高诊断准确性和患者护理质量。
Pub Date : 2024-06-14 DOI: 10.5858/arpa.2024-0020-OA
Dylan Wang, Hong Fang, Chi Young Ok, Jeffrey L Jorgensen, L Jeffrey Medeiros, Wei Wang, Sa A Wang

Context.—: Flow cytometry immunophenotypic analysis plays an important role in the diagnosis, classification, and disease monitoring of hematologic neoplasms. The interpretation of flow cytometry testing can be challenging.

Objective.—: To explore ways to improve diagnostic accuracy and in turn enhance the quality of patient care.

Design.—: A flow cytometry quality assurance (QA) program was developed. Cases from various complex flow cytometry panels were randomly selected and cross-reviewed. The outcomes of the QA review were categorized into 3 groups: complete agreement, minor discrepancy, and major discrepancy. Each discrepancy underwent a process of documentation, discussion, and resolution. Here we summarize our 3 years of experience with this program.

Results.—: In total, 6166 cases were evaluated; 6028 cases (97.7%) showed complete concordance, 120 cases (2.0%) showed minor discrepancies, and 18 cases (0.3%) showed major discrepancies. Among the top 5 panels evaluated, the panel evaluating mature T-cell abnormalities showed the highest rate of discrepancy, whereas the panel for evaluation of myelodysplastic syndromes showed the lowest discrepancy rate. When analyzing the trends of concordance and discrepancy over time, we observed a statistically significant decrease in discrepancy rate over time, from 4% at the beginning of the 6-month period to 1.5% in the final 6-month period.

Conclusions.—: The overall concordance rate was 97.7%. The remaining 2.3% of cases showed discrepancies that required a correction, underscoring the value and necessity of having a QA program. The overall discrepancy rates exhibited a gradual decline over time, indicative of the positive impact of the QA program on enhancing diagnostic competency and accuracy over time.

背景流式细胞术免疫分型分析在血液肿瘤的诊断、分类和疾病监测中发挥着重要作用。流式细胞仪检测的解释可能具有挑战性:探索提高诊断准确性的方法,进而提高患者护理质量:设计:制定流式细胞仪质量保证(QA)计划。从各种复杂的流式细胞仪面板中随机抽取病例并进行交叉审查。质量保证审查结果分为三类:完全一致、轻微差异和重大差异。每种差异都要经过记录、讨论和解决的过程。在此,我们总结了 3 年来的经验:共评估了 6166 个病例;6028 个病例(97.7%)显示完全一致,120 个病例(2.0%)显示轻微差异,18 个病例(0.3%)显示严重差异。在前 5 个评估小组中,评估成熟 T 细胞异常的小组差异率最高,而评估骨髓增生异常综合征的小组差异率最低。在分析随着时间推移的一致性和差异趋势时,我们观察到差异率随着时间的推移出现了统计学意义上的显著下降,从 6 个月初期的 4% 降至最后 6 个月的 1.5%:结论:总体吻合率为 97.7%。其余 2.3% 的病例出现了需要纠正的差异,这凸显了质量保证计划的价值和必要性。随着时间的推移,总体差异率呈逐渐下降趋势,这表明质量保证计划对提高诊断能力和准确性产生了积极影响。
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引用次数: 0
Advances in Human Leukocyte Antigen Testing Technologies and Management Strategies for Platelet Transfusion Refractoriness. 人类白细胞抗原检测技术的进展和血小板输注耐受性管理策略。
Pub Date : 2024-06-14 DOI: 10.5858/arpa.2023-0484-RA
H Cliff Sullivan, P Dayand Borge, Richard R Gammon, Manish Gandhi, Mary C Philogene, YanYun Wu, Patricia M Kopko

Context.—: The blood bank is often consulted for transfusion support of patients with suspected platelet transfusion refractoriness (PTR). The workup is complex because testing includes specialized assays that are uncommonly ordered with limited availability. Add to this the variety of possible products-crossmatched platelets, human leukocyte antigen (HLA)-matched platelets, HLA antigen-negative platelets-and the approach to PTR can be overwhelming. Moreover, most literature on the subject is published in transfusion medicine journals aimed at transfusion medicine physicians and blood bank specialists in academic settings. Resources tailored to community hospital blood banks are lacking.

Objective.—: To provide pathologists who may not have subspecialized training in transfusion medicine and who direct blood banks algorithmic workflows based on clinical scenario and test availability to provide appropriate transfusion support for patients with PTR.

Data sources.—: This review is a comprehensive overview of terminology, HLA testing procedures, interpretations, and practical recommendations for managing PTR in various scenarios based on expert opinion as well as relevant medical literature published from 2007 to 2022.

Conclusions.—: Consultation on PTR is complicated and encompasses many clinical and laboratory aspects. The lack of guidelines derived from high-quality prospective studies poses challenges in the workup and management of PTR. Hindering the process further are limited test availability, unfamiliarity with the technical assays, and the various specialized platelet products. The clinical evaluation algorithm presented herein along with the workflow pathways offer pathologists user-friendly and best-practice guidelines with different options based on the clinical scenario and the tests available.

背景对于疑似血小板输血耐受性(PTR)的患者,血库经常需要为其提供输血支持。这项工作非常复杂,因为检测包括专门的化验,而这些化验并不常见,可用性也有限。再加上可能的产品种类繁多--交叉配型血小板、人类白细胞抗原(HLA)配型血小板、HLA 抗原阴性血小板--PTR 的处理方法可能会让人应接不暇。此外,有关该主题的大多数文献都发表在输血医学期刊上,主要针对学术机构的输血医师和血库专家。针对社区医院血库的资源十分匮乏:为可能没有接受过输血医学亚专业培训、但负责指导血库的病理学家提供基于临床情景和检验可用性的算法工作流程,以便为 PTR 患者提供适当的输血支持:本综述根据专家意见以及2007年至2022年发表的相关医学文献,对术语、HLA检测程序、解释以及在各种情况下处理PTR的实用建议进行了全面概述:PTR 的会诊非常复杂,涉及临床和实验室的多个方面。缺乏来自高质量前瞻性研究的指南给 PTR 的检查和管理带来了挑战。此外,检验项目有限、对技术检测方法不熟悉以及各种专用血小板产品也进一步阻碍了这一过程。本文介绍的临床评估算法和工作流程路径为病理学家提供了用户友好型最佳实践指南,并根据临床情况和可用检验提供了不同的选择。
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引用次数: 0
Bridging the Clinical-Computational Transparency Gap in Digital Pathology. 弥合数字病理学中临床与计算透明度之间的差距。
Pub Date : 2024-06-14 DOI: 10.5858/arpa.2023-0250-RA
Qiangqiang Gu, Ankush Patel, Matthew G Hanna, Jochen K Lennerz, Chris Garcia, Mark Zarella, David McClintock, Steven N Hart

Context.—: Computational pathology combines clinical pathology with computational analysis, aiming to enhance diagnostic capabilities and improve clinical productivity. However, communication barriers between pathologists and developers often hinder the full realization of this potential.

Objective.—: To propose a standardized framework that improves mutual understanding of clinical objectives and computational methodologies. The goal is to enhance the development and application of computer-aided diagnostic (CAD) tools.

Design.—: The article suggests pivotal roles for pathologists and computer scientists in the CAD development process. It calls for increased understanding of computational terminologies, processes, and limitations among pathologists. Similarly, it argues that computer scientists should better comprehend the true use cases of the developed algorithms to avoid clinically meaningless metrics.

Results.—: CAD tools improve pathology practice significantly. Some tools have even received US Food and Drug Administration approval. However, improved understanding of machine learning models among pathologists is essential to prevent misuse and misinterpretation. There is also a need for a more accurate representation of the algorithms' performance compared to that of pathologists.

Conclusions.—: A comprehensive understanding of computational and clinical paradigms is crucial for overcoming the translational gap in computational pathology. This mutual comprehension will improve patient care through more accurate and efficient disease diagnosis.

背景计算病理学将临床病理学与计算分析相结合,旨在提高诊断能力和临床工作效率。然而,病理学家与开发人员之间的沟通障碍往往阻碍了这一潜力的充分发挥:提出一个标准化框架,以增进对临床目标和计算方法的相互理解。目的是加强计算机辅助诊断(CAD)工具的开发和应用:文章建议病理学家和计算机科学家在计算机辅助诊断开发过程中发挥关键作用。文章呼吁病理学家进一步了解计算术语、过程和局限性。同样,它认为计算机科学家应更好地理解所开发算法的真正用例,以避免无临床意义的指标:结果:计算机辅助设计工具大大改善了病理学实践。一些工具甚至获得了美国食品药品管理局的批准。然而,病理学家必须加深对机器学习模型的理解,以防止误用和误读。此外,与病理学家相比,还需要更准确地反映算法的性能:全面了解计算和临床范例对于克服计算病理学的转化差距至关重要。这种相互理解将通过更准确、更高效的疾病诊断改善对患者的护理。
{"title":"Bridging the Clinical-Computational Transparency Gap in Digital Pathology.","authors":"Qiangqiang Gu, Ankush Patel, Matthew G Hanna, Jochen K Lennerz, Chris Garcia, Mark Zarella, David McClintock, Steven N Hart","doi":"10.5858/arpa.2023-0250-RA","DOIUrl":"https://doi.org/10.5858/arpa.2023-0250-RA","url":null,"abstract":"<p><strong>Context.—: </strong>Computational pathology combines clinical pathology with computational analysis, aiming to enhance diagnostic capabilities and improve clinical productivity. However, communication barriers between pathologists and developers often hinder the full realization of this potential.</p><p><strong>Objective.—: </strong>To propose a standardized framework that improves mutual understanding of clinical objectives and computational methodologies. The goal is to enhance the development and application of computer-aided diagnostic (CAD) tools.</p><p><strong>Design.—: </strong>The article suggests pivotal roles for pathologists and computer scientists in the CAD development process. It calls for increased understanding of computational terminologies, processes, and limitations among pathologists. Similarly, it argues that computer scientists should better comprehend the true use cases of the developed algorithms to avoid clinically meaningless metrics.</p><p><strong>Results.—: </strong>CAD tools improve pathology practice significantly. Some tools have even received US Food and Drug Administration approval. However, improved understanding of machine learning models among pathologists is essential to prevent misuse and misinterpretation. There is also a need for a more accurate representation of the algorithms' performance compared to that of pathologists.</p><p><strong>Conclusions.—: </strong>A comprehensive understanding of computational and clinical paradigms is crucial for overcoming the translational gap in computational pathology. This mutual comprehension will improve patient care through more accurate and efficient disease diagnosis.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141319253","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Diagnostic Accuracy of Claudin-4 Immunochemistry in Differentiating Metastatic Carcinomas From Mesothelial Processes in Serous Effusion Cytology: A Systematic Review and Meta-analysis. Claudin-4免疫化学在区分转移性癌与浆液性渗出细胞学中的间皮细胞过程方面的诊断准确性:系统综述与元分析》。
Pub Date : 2024-06-14 DOI: 10.5858/arpa.2023-0560-RA
Maria Kleinaki, Johannes A Vey, Sinclair Awounvo, Angela Ishak, Maria Arnaouti, Han Suk Ryu, Ilias P Nikas

Context.—: Distinguishing metastatic carcinomas from mesotheliomas or reactive mesothelial cells in pleural, peritoneal, and pericardial effusions is a common diagnostic problem cytopathologists encounter.

Objective.—: To perform the first meta-analysis on the pooled diagnostic accuracy of claudin-4 immunochemistry in serous effusion cytopathology.

Design.—: This report followed the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines for diagnostic test accuracy studies. Three databases (PubMed, Scopus, and the Cochrane Library) were searched until October 9, 2023, followed by study selection using specific inclusion and exclusion criteria and data extraction. The study quality assessment was performed by using the Quality Assessment of Diagnostic Accuracy Studies 2 (QUADAS-2) tool. Statistical analysis was performed by using R to calculate the pooled sensitivity and specificity of claudin-4 immunochemistry. In addition, the diagnostic odds ratio was measured, representing the odds ratio of a positive result indicating a carcinoma rather than a mesothelial process in serous effusion cytology.

Results.—: Fourteen observational studies, published between 2011 and 2023, fulfilled the selection criteria and were included. All 14 studies used the 3E2C1 clone. Claudin-4 immunochemistry showed a high diagnostic accuracy in serous effusion cytology. The pooled sensitivity and specificity were 98.02% (95% CI, 93.96%-99.37%) and 99.72% (95% CI, 97.36%-99.97%), respectively. Lastly, the pooled diagnostic odds ratio was 1660.5 (95% CI, 760.0-3627.8) and no evidence of statistical heterogeneity between the included studies was found (I2 = 0%, τ2 = 0).

Conclusions.—: Claudin-4 may be used as a single pan-carcinoma immunochemical biomarker in the differential diagnosis between metastatic carcinomas and mesotheliomas or reactive mesothelial cells in serous effusion cytology.

背景区分胸腔、腹腔和心包积液中的转移性癌与间皮瘤或反应性间皮细胞是细胞病理学家经常遇到的诊断问题:首次对浆液性渗出细胞病理学中Claudin-4免疫化学的诊断准确性进行荟萃分析:本报告遵循了系统综述和荟萃分析的首选报告项目(PRISMA)指南,用于诊断测试准确性研究。在 2023 年 10 月 9 日之前,对三个数据库(PubMed、Scopus 和 Cochrane 图书馆)进行了检索,然后使用特定的纳入和排除标准选择研究并提取数据。研究质量评估采用诊断准确性研究质量评估 2 (QUADAS-2) 工具进行。使用 R 进行统计分析,计算克劳丁-4 免疫化学的集合敏感性和特异性。此外,还测量了诊断几率比,即在浆液性渗出细胞学检查中,阳性结果显示为癌而非间皮细胞过程的几率比:14项发表于2011年至2023年的观察性研究符合筛选标准并被纳入。所有14项研究都使用了3E2C1克隆。Claudin-4免疫化学对浆液性渗出细胞学的诊断准确率很高。汇总的敏感性和特异性分别为98.02%(95% CI,93.96%-99.37%)和99.72%(95% CI,97.36%-99.97%)。最后,汇总诊断几率比为 1660.5(95% CI,760.0-3627.8),未发现纳入研究之间存在统计学异质性(I2 = 0%,τ2 = 0):Claudin-4可作为单一的泛癌免疫化学生物标记物,用于鉴别诊断转移性癌和间皮瘤或浆液性渗出细胞学中的反应性间皮细胞。
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引用次数: 0
General Applicability of Existing College of American Pathologists Accreditation Requirements to Clinical Implementation of Machine Learning-Based Methods in Molecular Oncology Testing. 现有美国病理学家学会认证要求对分子肿瘤学检测中基于机器学习方法的临床实施的一般适用性。
Pub Date : 2024-06-14 DOI: 10.5858/arpa.2024-0037-CP
Larissa V Furtado, Kenji Ikemura, Cagla Y Benkli, Joel T Moncur, Richard S P Huang, Ahmet Zehir, Katherine Stellato, Patricia Vasalos, Navid Sadri, Carlos J Suarez

Context.—: The College of American Pathologists (CAP) accreditation requirements for clinical laboratory testing help ensure laboratories implement and maintain systems and processes that are associated with quality. Machine learning (ML)-based models share some features of conventional laboratory testing methods. Accreditation requirements that specifically address clinical laboratories' use of ML remain in the early stages of development.

Objective.—: To identify relevant CAP accreditation requirements that may be applied to the clinical adoption of ML-based molecular oncology assays, and to provide examples of current and emerging ML applications in molecular oncology testing.

Design.—: CAP accreditation checklists related to molecular pathology and general laboratory practices (Molecular Pathology, All Common and Laboratory General) were reviewed. Examples of checklist requirements that are generally applicable to validation, revalidation, quality management, infrastructure, and analytical procedures of ML-based molecular oncology assays were summarized. Instances of ML use in molecular oncology testing were assessed from literature review.

Results.—: Components of the general CAP accreditation framework that exist for traditional molecular oncology assay validation and maintenance are also relevant for implementing ML-based tests in a clinical laboratory. Current and emerging applications of ML in molecular oncology testing include DNA methylation profiling for central nervous system tumor classification, variant calling, microsatellite instability testing, mutational signature analysis, and variant prediction from histopathology images.

Conclusions.—: Currently, much of the ML activity in molecular oncology is within early clinical implementation. Despite specific considerations that apply to the adoption of ML-based methods, existing CAP requirements can serve as general guidelines for the clinical implementation of ML-based assays in molecular oncology testing.

背景美国病理学家学会(CAP)对临床实验室检测的认证要求有助于确保实验室实施并维护与质量相关的系统和流程。基于机器学习(ML)的模型与传统的实验室检测方法有一些共同之处。专门针对临床实验室使用 ML 的认可要求仍处于早期发展阶段:确定可能适用于临床采用基于 ML 的分子肿瘤学检测方法的相关 CAP 认证要求,并提供分子肿瘤学检测中当前和新兴 ML 应用的实例:对与分子病理学和普通实验室实践(分子病理学、所有普通实验室和普通实验室)相关的 CAP 认证检查表进行了审查。总结了一般适用于基于分子生物学检测的分子肿瘤学检测的验证、再验证、质量管理、基础设施和分析程序的核对表要求实例。根据文献回顾评估了分子肿瘤学检测中使用 ML 的实例:结果--:CAP 一般认证框架中用于传统分子肿瘤学检测验证和维护的部分也适用于在临床实验室实施基于 ML 的检测。ML 在分子肿瘤学检测中的现有和新兴应用包括用于中枢神经系统肿瘤分类的 DNA 甲基化分析、变异调用、微卫星不稳定性检测、突变特征分析和组织病理学图像变异预测:目前,分子肿瘤学领域的大部分 ML 活动都处于早期临床实施阶段。尽管在采用基于 ML 的方法时有一些具体的考虑因素,但现有的 CAP 要求可以作为在分子肿瘤学检测中临床实施基于 ML 的检测方法的一般指导原则。
{"title":"General Applicability of Existing College of American Pathologists Accreditation Requirements to Clinical Implementation of Machine Learning-Based Methods in Molecular Oncology Testing.","authors":"Larissa V Furtado, Kenji Ikemura, Cagla Y Benkli, Joel T Moncur, Richard S P Huang, Ahmet Zehir, Katherine Stellato, Patricia Vasalos, Navid Sadri, Carlos J Suarez","doi":"10.5858/arpa.2024-0037-CP","DOIUrl":"https://doi.org/10.5858/arpa.2024-0037-CP","url":null,"abstract":"<p><strong>Context.—: </strong>The College of American Pathologists (CAP) accreditation requirements for clinical laboratory testing help ensure laboratories implement and maintain systems and processes that are associated with quality. Machine learning (ML)-based models share some features of conventional laboratory testing methods. Accreditation requirements that specifically address clinical laboratories' use of ML remain in the early stages of development.</p><p><strong>Objective.—: </strong>To identify relevant CAP accreditation requirements that may be applied to the clinical adoption of ML-based molecular oncology assays, and to provide examples of current and emerging ML applications in molecular oncology testing.</p><p><strong>Design.—: </strong>CAP accreditation checklists related to molecular pathology and general laboratory practices (Molecular Pathology, All Common and Laboratory General) were reviewed. Examples of checklist requirements that are generally applicable to validation, revalidation, quality management, infrastructure, and analytical procedures of ML-based molecular oncology assays were summarized. Instances of ML use in molecular oncology testing were assessed from literature review.</p><p><strong>Results.—: </strong>Components of the general CAP accreditation framework that exist for traditional molecular oncology assay validation and maintenance are also relevant for implementing ML-based tests in a clinical laboratory. Current and emerging applications of ML in molecular oncology testing include DNA methylation profiling for central nervous system tumor classification, variant calling, microsatellite instability testing, mutational signature analysis, and variant prediction from histopathology images.</p><p><strong>Conclusions.—: </strong>Currently, much of the ML activity in molecular oncology is within early clinical implementation. Despite specific considerations that apply to the adoption of ML-based methods, existing CAP requirements can serve as general guidelines for the clinical implementation of ML-based assays in molecular oncology testing.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141319254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inappropriate Laboratory Testing: Significant Waste Quantified by a Large-Scale Year-Long Study of Medicare and Commercial Payer Reimbursement. 不适当的实验室检测:通过对医疗保险和商业支付方报销情况进行长达一年的大规模研究,量化了重大浪费现象。
Pub Date : 2024-06-06 DOI: 10.5858/arpa.2023-0486-OA
Dave Smart, Jeff Schreier, Ila R Singh

Context.—: Laboratory testing, beyond what is essential for managing health, is considered low-value care, posing patient risks and wasting resources. Measuring excess testing on a national level is crucial to identify waste and optimize healthcare resource allocation for maximum impact.

Objective.—: To measure inappropriate laboratory testing and its cost across Medicare and many US commercial payers.

Design.—: A retrospective analysis on 2019 claims data measured the frequency of 4 commonly used laboratory tests among 64 million individuals with Medicare and 168 million with commercial insurance. Tests included 25-hydroxy vitamin D, prostate-specific antigen, lipid panel, and hemoglobin A1c. Clinical guidelines, medical literature, and payer recommendations were used to determine appropriate testing frequencies. Costs of excessive testing were calculated using the 2019 clinical lab fee schedule. A targeted analysis of 2022 data confirmed 2019 trends.

Results.—: Analysis of ∼84 million tests from ∼1 billion outpatient test claim records revealed that 7% to 51% of tests exceeded recommended frequencies, with some egregious overuse: for example hemoglobin-A1c or prostate-specific antigen every week. The conservative cost estimate for 4 excess tests surpassed $350 million.

Conclusions.—: This extensive study, involving 232 million people, found that 14.4 million of 60.5 million individuals (23.8%) tested had undergone excessive laboratory testing, with likely little benefit and possible harm. Extrapolating findings to all laboratory testing suggests that Medicare alone may have incurred direct excess expenses from $1.95 to $3.28 billion in 2019, without factoring the hidden costs of excessive testing (eg, downstream care). Addressing unnecessary testing is crucial to lowering costs and redirecting resources for greater patient benefit.

背景实验室检测超出了管理健康所必需的范围,被认为是低价值的医疗服务,会给患者带来风险并浪费资源。在全国范围内衡量过量检测对于识别浪费和优化医疗资源分配以达到最大效果至关重要:测量医疗保险和许多美国商业支付机构的不适当实验室检测及其成本:对 2019 年理赔数据进行回顾性分析,测量了 6,400 万名医疗保险参保者和 1.68 亿名商业保险参保者进行 4 项常用实验室检测的频率。化验项目包括 25- 羟基维生素 D、前列腺特异性抗原、血脂组合和血红蛋白 A1c。临床指南、医学文献和付款人建议被用来确定适当的检测频率。过量检测的成本是根据 2019 年临床实验室收费表计算得出的。对 2022 年数据的针对性分析证实了 2019 年的趋势:对 10 亿份门诊检验报销记录中的 8,400 万项检验项目进行分析后发现,7% 至 51% 的检验项目超过了建议频率,其中不乏严重过度使用的项目:例如每周进行血红蛋白-A1c 或前列腺特异性抗原检验。保守估计,4 项超量检测的成本超过 3.5 亿美元:这项涉及 2.32 亿人的广泛研究发现,在接受检测的 6050 万人中,有 1440 万人(23.8%)接受了过度的实验室检测,而这些检测可能几乎没有益处,反而可能造成伤害。将研究结果推广到所有实验室检测表明,仅医疗保险一项在 2019 年就可能产生了 19.5 亿至 32.8 亿美元的直接超额支出,这还没有考虑到过度检测的隐性成本(如下游护理)。解决不必要的检测问题对于降低成本和将资源转用于为患者带来更多益处至关重要。
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引用次数: 0
Conventional Cytogenetic Analysis of Constitutional Abnormalities: A 20-Year Review of Proficiency Test Results From the College of American Pathologists/American College of Medical Genetics and Genomics Cytogenetics Committee. 体质异常的常规细胞遗传学分析:美国病理学家学会/美国医学遗传学和基因组学学会细胞遗传学委员会 20 年能力测试结果回顾》(A 20-Year Review of Proficiency Test Results From the College of American Pathologists/American College of Medical Genetics and Genomics Cytogenetics Committee)。
Pub Date : 2024-06-05 DOI: 10.5858/arpa.2024-0048-CP
Brittney Boles, Juli-Anne Gardner, Catherine W Rehder, Brynn Levy, Gopalrao V Velagaleti, Reha M Toydemir, William R Sukov, Daniel P Larson, Yang Cao, Christopher Mixon, Rachel K Vanderscheldon, Ying S Zou, Caroline Astbury, Karen D Tsuchiya, Jess F Peterson

Context.—: The joint College of American Pathologists/American College of Medical Genetics and Genomics Cytogenetics Committee works to ensure competency and proficiency of clinical cytogenetics testing laboratories through proficiency testing programs for various clinical tests offered by such laboratories, including the evaluation of constitutional abnormalities.

Objective.—: To review and analyze 20 years of constitutional chromosome analysis proficiency testing results (2003-2022), primarily utilizing G-banded karyograms.

Design.—: A retrospective review of results from 2003 through 2022 was performed, identifying challenges addressing constitutional disorders. The chromosomal abnormalities and overall performance were evaluated.

Results.—: A total of 184 cases from 161 proficiency testing challenges were administered from 2003 through 2022. Challenges consisted of metaphase images and accompanying clinical history for evaluation of numerical and/or structural abnormalities. Of the 184 cases, only 2 (1%) failed to reach an 80% grading consensus for recognition of the abnormality. Both cases illustrated the limitations of correctly characterizing some chromosomal abnormalities, including recombinant chromosomal abnormalities and isochromosome identification. In addition, 2 cases failed to reach a consensus for nomenclature reporting: 1 with an isochromosome and another with a duplication.

Conclusions.—: This 20-year review illustrates the high rate of competency and proficiency of cytogenetic laboratories in the correct identification of constitutional chromosome abnormalities.

背景美国病理学家学会/美国医学遗传学和基因组学学会细胞遗传学联合委员会致力于通过对临床细胞遗传学检测实验室提供的各种临床检测项目(包括体质异常评估)进行能力验证,确保这些实验室的能力和水平:回顾并分析 20 年来(2003-2022 年)的体质染色体分析能力测试结果,主要利用 G 带核型图:对 2003 年至 2022 年的结果进行回顾性分析,找出解决染色体异常所面临的挑战。结果:从 2003 年到 2022 年,共进行了 161 次能力验证挑战,其中包括 184 个病例。测试内容包括核分裂期图像和随附的临床病史,用于评估数量和/或结构异常。在 184 个病例中,只有 2 个病例(1%)在识别异常方面未能达成 80% 的分级共识。这两个病例都说明了正确鉴定某些染色体异常的局限性,包括重组染色体异常和同源染色体鉴定。此外,有两个病例未能就命名报告达成共识:结论:20年来的回顾表明,细胞遗传实验室在正确识别染色体异常方面的能力和熟练程度都很高。
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引用次数: 0
Measurable Residual Disease Analysis by Flow Cytometry and Correlation With Molecular Measurable Residual Disease in Acute Promyelocytic Leukemia: A Real-World Prospective Study. 急性早幼粒细胞白血病的流式细胞术可测量残留病分析及与分子可测量残留病的相关性:一项真实世界的前瞻性研究。
Pub Date : 2024-06-05 DOI: 10.5858/arpa.2023-0460-OA
Zhihao Wen, Xinran Xue, Shuhua Li, Yu Liu, Yongmei Jin, Nenggang Jiang, Hongyan Liao

Context.—: Acute promyelocytic leukemia (APL) is a subtype of acute myeloid leukemia distinguished by its rapidly progressive and fatal clinical course. Measurable/minimal residual disease (MRD) monitoring is vital for the prognosis and clinical management of acute myeloid leukemia.

Objective.—: To examine the immunophenotypes of the residual leukemic cells, evaluate the performance of multiparametric flow cytometry (FCM) measuring MRD, and compare it with molecular monitoring in patients diagnosed with APL.

Design.—: Two hundred seventy-seven patients with APL were enrolled. Immunophenotypes were prospectively analyzed by a 1-tube-10-color antibody panel via FCM. MRD of APL with PML::RARα was detected by real-time quantitative polymerase chain reaction (RQ-PCR). The clinical value of MRD as an indicator of survival was also examined.

Results.—: APL showed 5 distinct patterns of residual leukemic cells, based on CD45 and side-scatter scattergram, all with CD9 positivity and a previously unrealized loss of CD117. FCM-based MRD evaluation showed a concordance rate of 87.7% with PCR. At the end of the consolidation therapy, MRD measured by both PCR and FCM could differentiate patients with longer and shorter overall survival (OS) (P = .04 and P = .03, respectively). Patients with APL variant had a shorter OS than patients with APL who harbored PML::RARα (P < .001).

Conclusions.—: CD9 is a reliable marker to differentiate residual leukemic cells from normally differentiating myeloid cells. FCM demonstrated a high comparability to PCR-MRD and an excellent performance in predicting OS, and thus could potentially be used as a routine indicator in the clinical management of patients with APL.

背景急性早幼粒细胞白血病(APL)是急性髓性白血病的一种亚型,其临床病程进展迅速且具有致命性。监测可测量/最小残留病(MRD)对急性髓性白血病的预后和临床治疗至关重要:研究残留白血病细胞的免疫表型,评估多参数流式细胞术(FCM)测量 MRD 的性能,并将其与分子监测在确诊 APL 患者中进行比较:设计:共招募了 277 名 APL 患者。通过 FCM 使用 1 管 10 色抗体面板对免疫表型进行前瞻性分析。通过实时定量聚合酶链反应(RQ-PCR)检测带有 PML::RARα的 APL 的 MRD。研究还考察了 MRD 作为生存指标的临床价值:根据 CD45 和侧散射散点图,APL 表现出 5 种不同的残留白血病细胞模式,所有细胞均为 CD9 阳性,且 CD117 先前未发现丢失。基于 FCM 的 MRD 评估显示,与 PCR 的吻合率为 87.7%。在巩固治疗结束时,PCR 和 FCM 测量的 MRD 可以区分总生存期(OS)较长和较短的患者(P = .04 和 P = .03)。与携带PML::RARα的APL患者相比,APL变异型患者的OS更短(P < .001):CD9是区分残留白血病细胞和正常分化髓系细胞的可靠标记物。FCM与PCR-MRD具有很高的可比性,在预测OS方面表现出色,因此有可能被用作APL患者临床治疗的常规指标。
{"title":"Measurable Residual Disease Analysis by Flow Cytometry and Correlation With Molecular Measurable Residual Disease in Acute Promyelocytic Leukemia: A Real-World Prospective Study.","authors":"Zhihao Wen, Xinran Xue, Shuhua Li, Yu Liu, Yongmei Jin, Nenggang Jiang, Hongyan Liao","doi":"10.5858/arpa.2023-0460-OA","DOIUrl":"https://doi.org/10.5858/arpa.2023-0460-OA","url":null,"abstract":"<p><strong>Context.—: </strong>Acute promyelocytic leukemia (APL) is a subtype of acute myeloid leukemia distinguished by its rapidly progressive and fatal clinical course. Measurable/minimal residual disease (MRD) monitoring is vital for the prognosis and clinical management of acute myeloid leukemia.</p><p><strong>Objective.—: </strong>To examine the immunophenotypes of the residual leukemic cells, evaluate the performance of multiparametric flow cytometry (FCM) measuring MRD, and compare it with molecular monitoring in patients diagnosed with APL.</p><p><strong>Design.—: </strong>Two hundred seventy-seven patients with APL were enrolled. Immunophenotypes were prospectively analyzed by a 1-tube-10-color antibody panel via FCM. MRD of APL with PML::RARα was detected by real-time quantitative polymerase chain reaction (RQ-PCR). The clinical value of MRD as an indicator of survival was also examined.</p><p><strong>Results.—: </strong>APL showed 5 distinct patterns of residual leukemic cells, based on CD45 and side-scatter scattergram, all with CD9 positivity and a previously unrealized loss of CD117. FCM-based MRD evaluation showed a concordance rate of 87.7% with PCR. At the end of the consolidation therapy, MRD measured by both PCR and FCM could differentiate patients with longer and shorter overall survival (OS) (P = .04 and P = .03, respectively). Patients with APL variant had a shorter OS than patients with APL who harbored PML::RARα (P < .001).</p><p><strong>Conclusions.—: </strong>CD9 is a reliable marker to differentiate residual leukemic cells from normally differentiating myeloid cells. FCM demonstrated a high comparability to PCR-MRD and an excellent performance in predicting OS, and thus could potentially be used as a routine indicator in the clinical management of patients with APL.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141262513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Archives of pathology & laboratory medicine
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