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Emerging Infections and the Archives of Pathology & Laboratory Medicine. 新发感染与病理学与检验医学档案。
IF 3.2 Pub Date : 2026-01-27 DOI: 10.5858/arpa.2025-0278-RA
David A Schwartz

Context.—: Anatomic pathology as a subspecialty has been invaluable in understanding emerging and reemerging infectious diseases throughout many outbreaks and pandemics.

Objective.—: To describe the contributions of the Archives of Pathology & Laboratory Medicine to understanding emerging infections.

Data sources.—: Medical literature and periodicals.

Conclusions.—: The Archives has a long tradition of supporting significant anatomic pathology research into these diseases through timely publishing of original research articles, patient cases, histopathology findings, reviews, and commentaries of public health importance. This was highlighted during the 1976 Legionnaires' disease outbreak in Philadelphia, when the Archives published the first description of the pathologic findings of Legionnaires' disease based on an autopsy study of 26 persons who had died from the novel infection. In that article, John Blackmon, Martin Hicklin, and Francis Chandler at the Centers for Disease Control and Prevention described the pathologic findings of severe pneumonia in all patients and were able to visualize the causative bacillus. The Archives continued to address the importance of emerging infections by publishing a special issue in February 1996 entitled "Emerging and Reemerging Global Microbial Threats." With the increasing importance of emerging infections, a second special issue on this topic was published in August 1997 entitled "Emerging and Reemerging Infectious Diseases." In response to the Zika virus outbreak that began in Brazil in 2015, the Archives became the first peer-reviewed journal to devote a special issue to this emerging viral infection that was causing fetal deaths and congenital malformations, entitled "The Zika Virus Global Pandemic: The Latest Emerging Infection." During the global COVID-19 pandemic, the Archives continued to publish timely articles addressing many important issues about SARS-CoV-2 infections.

上下文。解剖病理学作为一门亚专业,在了解在许多疾病爆发和大流行中新出现和再出现的传染病方面发挥了宝贵的作用。-:描述病理学与检验医学档案对理解新发感染的贡献。数据源。-:医学文献和期刊。结论。-:通过及时发表具有公共卫生重要性的原创研究文章、患者病例、组织病理学发现、评论和评论,档案馆具有悠久的传统,支持对这些疾病进行重要的解剖病理学研究。这一点在1976年费城军团病爆发期间得到了强调,当时档案馆根据对26名死于这种新型感染的人的尸检研究,首次发表了军团病病理结果的描述。在那篇文章中,疾病控制和预防中心的约翰·布莱克蒙、马丁·希克林和弗朗西斯·钱德勒描述了所有重症肺炎患者的病理结果,并能够可视化致病杆菌。档案馆在1996年2月出版了题为“新出现和重新出现的全球微生物威胁”的特刊,继续讨论新出现的感染的重要性。随着新发传染病日益重要,1997年8月出版了关于这一专题的第二期特刊,题为“新发和再发传染病”。为应对2015年在巴西爆发的寨卡病毒,《档案馆》成为第一家同行评审期刊,专门为这种导致胎儿死亡和先天性畸形的新出现的病毒感染撰写了一期特刊,题为《寨卡病毒全球大流行:最新出现的感染》。在全球COVID-19大流行期间,档案馆继续及时发表文章,解决有关SARS-CoV-2感染的许多重要问题。
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引用次数: 0
Destombes - The Forgotten Pathologist: Rosai-Dorfman Disease, From Initial Recognition to the Latest and Greatest. desstombes -被遗忘的病理学家:Rosai-Dorfman病,从最初的认识到最新的和最大的。
IF 3.2 Pub Date : 2026-01-27 DOI: 10.5858/arpa.2025-0403-RA
Michael E Kallen, Genevieve M Crane

Context.—: As part of the 100th anniversary of Archives of Pathology & Laboratory Medicine, we revisit a seminal article published by Juan Rosai, MD, and Ronald Dorfman, MBBCh, FRCPath, in this journal in 1969. This is one of the initial series describing the entity now known as Rosai-Dorfman-Destombes disease (RDD), following the case series of the French pathologist Pierre-Paul Louis Lucien Destombes, MD, which describes a striking but enigmatic entity that now bears their names. Rosai and Dorfman described this process using the moniker sinus histiocytosis with massive lymphadenopathy, with presentation in pediatric and young adults, with massive, painless cervical lymphadenopathy and a benign, but potentially protracted course. Histiocytes show characteristic cytomorphologic features (making it one of the most beloved entities by pathologists and board examiners alike), including round, hypochromatic nuclei with prominent nucleoli and abundant pale eosinophilic cytoplasm, with trafficking of inflammatory elements termed emperipolesis.

Objective.—: To review the historical context surrounding the recognition of RDD and key clinicopathologic and molecular features.

Data sources.—: Historical papers as well as more recent studies advancing our understanding of RDD were identified from the literature, using PubMed and other search engines.

Conclusions.—: RDD remains a potentially challenging entity for diagnosis and treatment given variation in presentation, morphologic features, and often a lack of known molecular drivers, which may occur in isolation or in patients with altered immune function, germline disorders, or other neoplastic conditions.

上下文。作为《病理与检验医学档案》100周年纪念的一部分,我们回顾了1969年由Juan Rosai医学博士和Ronald Dorfman医学博士在该杂志上发表的一篇开创性文章。继法国病理学家Pierre-Paul Louis Lucien Destombes博士的病例系列之后,这是描述现在被称为Rosai-Dorfman-Destombes病(RDD)的最初系列之一,该病例系列描述了一种引人注目但神秘的实体,现在以他们的名字命名。Rosai和Dorfman将这一过程称为窦性组织细胞增生伴大量淋巴结病,表现为儿童和年轻人的大量无痛性颈部淋巴结病,为良性,但病程可能延长。组织细胞表现出独特的细胞形态特征(使其成为病理学家和检查人员最喜爱的实体之一),包括圆形,低染色的细胞核,突出的核核和丰富的苍白嗜酸性细胞质,并伴有被称为上皮性增生的炎症因子的运输。回顾RDD认识的历史背景和关键的临床病理和分子特征。数据源。-:使用PubMed和其他搜索引擎,从文献中确定了历史论文以及最近的研究,这些研究促进了我们对RDD的理解。-: RDD在诊断和治疗方面仍然是一个具有潜在挑战性的实体,因为它的表现、形态特征存在差异,而且通常缺乏已知的分子驱动因素,这些因素可能发生在孤立的情况下,也可能发生在免疫功能改变、种系疾病或其他肿瘤疾病的患者身上。
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引用次数: 0
Machine Learning-Based Detection of Intestinal Metaplasia Identifies Clinically Missed Cases. 基于机器学习的肠化生检测识别临床漏诊病例。
IF 3.2 Pub Date : 2026-01-22 DOI: 10.5858/arpa.2025-0307-OA
John A Willis, Jacqueline Emerson, Wei Chen, Fengming Chen, Avani A Pendse, Katherine S Garman, William R Jeck

Context.—: Gastric intestinal metaplasia is a recognized precursor and risk factor to gastric cancer, and correct diagnosis is required for clinical decision-making.

Objective.—: To evaluate potential missed intestinal metaplasia diagnoses and develop automated approaches to quantification, we developed an artificial intelligence pipeline for review of both whole slide images and pathology reports.

Design.—: A patch-based classifier was trained and applied to 1935 gastric biopsy specimens. Specimens with disagreement between the artificial intelligence pipeline and the clinical pathology report were reviewed by 3 pathologists who were blinded to the diagnoses.

Results.—: Following review, 30 of 297 apparently "false-positive" artificial intelligence detections were determined to represent undetected intestinal metaplasia. The artificial intelligence quantification of intestinal metaplasia strongly agreed with human scoring (Spearman rank correlation coefficient, 0.90; P < .001). Finally, a large language model-based evaluation of pathology report text showed near perfect ability to categorize reports as positive or negative for intestinal metaplasia (99.3% of specimens) with a few reports evaluated as equivocal (0.7%).

Conclusions.—: An artificial intelligence-based quality assurance pipeline could detect missed intestinal metaplasia in as many as 1.5% of gastric biopsy specimens, highlighting a potentially addressable diagnostic gap. An automated pipeline could additionally provide quantitative information that could be informative for management.

上下文。-:胃肠化生是公认的胃癌的前兆和危险因素,正确诊断是临床决策的必要条件。为了评估潜在的肠化生漏诊和开发自动化的量化方法,我们开发了一个人工智能管道来审查整个幻灯片图像和病理报告。-:训练了一个基于贴片的分类器,并将其应用于1935个胃活检标本。人工智能管道与临床病理报告不一致的标本由3名对诊断不知情的病理医师进行复核。-:经过审查,297例明显“假阳性”的人工智能检测中有30例被确定为未检测到的肠化生。人工智能对肠化生的量化与人类评分非常吻合(Spearman秩相关系数为0.90;P < 0.001)。最后,一项基于语言模型的病理报告文本评估显示,小肠化生报告的阳性或阴性分类能力近乎完美(99.3%的标本),少数报告被评估为模棱两可(0.7%)。-:基于人工智能的质量保证管道可以在多达1.5%的胃活检标本中检测到遗漏的肠化生,突出了一个潜在的可解决的诊断空白。自动化管道还可以提供定量信息,为管理层提供信息。
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引用次数: 0
Did I Get It Right?: Implementation of Pathology Trainee Report Feedback System Integrated With Digital Pathology. 我做对了吗?:与数字病理学相结合的病理实习报告反馈系统的实现。
IF 3.2 Pub Date : 2026-01-22 DOI: 10.5858/arpa.2025-0421-OA
Jingjing Cao, Dibson Dibe Gondim

Context.—: Effective pathology report feedback is vital for trainee education but is often limited by information technology systems that lack integrated educational support. Most laboratory information systems do not retain resident draft reports after report finalization and lack workflows for structured feedback, hindering self-assessment and progress tracking.

Objective.—: To develop and implement a feedback system that allows pathology trainees to compare their preliminary diagnostic reports with finalized faculty reports and corresponding digital slides.

Design.—: A custom feedback system was developed, integrating with Cerner Millennium (laboratory information system) and the Paige digital pathology platform. Trainees flagged cases by simulating a report finalization command, which stored their preliminary diagnosis. An automated report compared the resident and faculty diagnoses side by side and included direct links to the relevant digital slides. A total of 3854 cases from 13 trainees were analyzed for diagnostic concordance, categorized as accurate, mostly accurate, partially accurate, or inaccurate.

Results.—: Overall diagnostic accuracy was 68.8% (2650 of 3854), increasing to 86.1% (3317 of 3854) when "mostly accurate" cases were included. Accuracy varied by trainee (range, 55.5% [238 of 429]-78.3% [553 of 706]) and organ system (highest in neuropathology at 83.8% [31 of 37], lowest in placenta at 46% [46 of 100]). System usage also varied, with some trainees reviewing more than 700 cases and others fewer than 10. Report comparison allowed for assessment of both diagnostic accuracy and report quality.

Conclusions.—: This integrated feedback system enables scalable, trainee-centered evaluation of diagnostic performance and report writing, fostering reflective learning in daily practice. The database generated through this system further provides opportunities for deeper data exploration, identification of educational trends, and development of competency-based assessment frameworks.

上下文。有效的病理报告反馈对培训生教育至关重要,但往往受到缺乏综合教育支持的信息技术系统的限制。大多数实验室信息系统在报告定稿后不保留常驻草稿报告,缺乏结构化反馈的工作流程,阻碍了自我评估和进度跟踪。-:开发和实施一个反馈系统,使病理学实习生能够将他们的初步诊断报告与最终的教师报告和相应的数字幻灯片进行比较。-:开发了一个定制的反馈系统,集成了Cerner Millennium(实验室信息系统)和Paige数字病理平台。学员们通过模拟存储初步诊断的报告最终化命令来标记病例。一份自动报告将住院医生和教师的诊断结果进行了对比,并提供了相关数字幻灯片的直接链接。对13名学员共3854例进行诊断一致性分析,将诊断一致性分为准确、基本准确、部分准确和不准确。-:总体诊断准确率为68.8%(3854例中的2650例),当包括“大部分准确”病例时,诊断准确率增加到86.1%(3854例中的3317例)。准确率因受训者而异(范围为55.5%[429 / 238]-78.3%[706 / 553])和器官系统(神经病理学最高为83.8%[37 / 31],胎盘最低为46%[100 / 46])。系统的使用情况也各不相同,一些受训者审查了700多个案例,而另一些则不到10个。报告比较允许评估诊断准确性和报告质量。-:这一综合反馈系统能够对诊断表现和报告写作进行可扩展的、以学员为中心的评估,在日常实践中促进反思性学习。通过该系统产生的数据库进一步为深入的数据探索、识别教育趋势和开发基于能力的评估框架提供了机会。
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引用次数: 0
Impact of Entrustable Professional Activities on Workload and Education in a Canadian Pathology Residency Program. 加拿大病理学住院医师项目中可信赖的专业活动对工作量和教育的影响。
IF 3.2 Pub Date : 2026-01-22 DOI: 10.5858/arpa.2025-0318-OA
Irene Y Xie, Susan J Done, Tra Truong

Context.—: Training the next generation of pathologists is vital for high-quality clinical medicine. Competency-Based Medical Education (CBME) and accumulation of "Entrustable Professional Activities" (EPAs) are being implemented worldwide to standardize medical training in all specialties. However, CBME research specific to pathology is lacking. Surveys of training programs routinely using EPAs highlight challenges with administrative burden, completion rates, and feedback.

Objective.—: To investigate the impact of EPAs on workload and feedback in a pathology program after 5 years of implementation.

Design.—: A cross-sectional survey was administered to residents in the Diagnostic and Molecular (Anatomical) Pathology program at the University of Toronto, which transitioned to an EPA-based CBME system in 2019.

Results.—: The response rate was 83% (n = 25 of 30). More than half of responding residents submitted at least 4 EPAs per week (52%; n = 13), and most residents (76%; n = 19) estimated spending at least a half hour per week submitting and following up on EPAs. Most residents (92%; n = 23) disagreed with the statement that EPAs provided valuable feedback to their learning; however, all residents (100%; n = 25) agreed verbal feedback at sign-out was one of the most useful assessments of their abilities. Only a minority (36%; n = 9) regularly received verbal feedback alongside an EPA. Respondents overwhelmingly felt that EPAs had a negative effect on the rapport between staff and residents, and cited concerns about staff workloads.

Conclusions.—: This study is the first to quantify the workload associated with CBME in a pathology residency program and raises practical considerations for training programs considering implementation of EPAs.

上下文。培养下一代病理学家对高质量的临床医学至关重要。以能力为基础的医学教育(CBME)和“可信赖的专业活动”(EPAs)的积累正在世界范围内实施,以规范所有专业的医学培训。然而,缺乏针对病理的CBME研究。对常规使用epa的培训项目的调查突出了管理负担、完成率和反馈方面的挑战。目的:研究EPAs在病理学项目实施5年后对工作量和反馈的影响。-:对多伦多大学诊断和分子(解剖)病理学专业的住院医师进行了横断面调查,该专业于2019年过渡到基于epa的CBME系统。-:有效率为83% (n = 25 / 30)。超过一半的受访居民每周至少提交4份epa (52%; n = 13),大多数居民(76%;n = 19)估计每周至少花半小时提交和跟进epa。大多数居民(92%,n = 23)不同意环境绩效评估对他们的学习提供了有价值的反馈;然而,所有的居民(100%;n = 25)都同意在登记时口头反馈是对他们能力最有用的评估之一。只有少数人(36%,n = 9)定期收到EPA的口头反馈。绝大多数受访者认为,环境保护措施对员工与居民之间的关系产生了负面影响,并提到了对员工工作量的担忧。本研究首次量化了病理住院医师项目中与CBME相关的工作量,并提出了考虑实施EPAs的培训项目的实际考虑。
{"title":"Impact of Entrustable Professional Activities on Workload and Education in a Canadian Pathology Residency Program.","authors":"Irene Y Xie, Susan J Done, Tra Truong","doi":"10.5858/arpa.2025-0318-OA","DOIUrl":"https://doi.org/10.5858/arpa.2025-0318-OA","url":null,"abstract":"<p><strong>Context.—: </strong>Training the next generation of pathologists is vital for high-quality clinical medicine. Competency-Based Medical Education (CBME) and accumulation of \"Entrustable Professional Activities\" (EPAs) are being implemented worldwide to standardize medical training in all specialties. However, CBME research specific to pathology is lacking. Surveys of training programs routinely using EPAs highlight challenges with administrative burden, completion rates, and feedback.</p><p><strong>Objective.—: </strong>To investigate the impact of EPAs on workload and feedback in a pathology program after 5 years of implementation.</p><p><strong>Design.—: </strong>A cross-sectional survey was administered to residents in the Diagnostic and Molecular (Anatomical) Pathology program at the University of Toronto, which transitioned to an EPA-based CBME system in 2019.</p><p><strong>Results.—: </strong>The response rate was 83% (n = 25 of 30). More than half of responding residents submitted at least 4 EPAs per week (52%; n = 13), and most residents (76%; n = 19) estimated spending at least a half hour per week submitting and following up on EPAs. Most residents (92%; n = 23) disagreed with the statement that EPAs provided valuable feedback to their learning; however, all residents (100%; n = 25) agreed verbal feedback at sign-out was one of the most useful assessments of their abilities. Only a minority (36%; n = 9) regularly received verbal feedback alongside an EPA. Respondents overwhelmingly felt that EPAs had a negative effect on the rapport between staff and residents, and cited concerns about staff workloads.</p><p><strong>Conclusions.—: </strong>This study is the first to quantify the workload associated with CBME in a pathology residency program and raises practical considerations for training programs considering implementation of EPAs.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146031806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Retrospective Report of a Multi-hospital Health System's Response to Mitigate the 2024 Worldwide Shortage of Blood Culture Media and Maintain Standard-of-Care Testing. 多医院卫生系统应对2024年全球血液培养基短缺和维持标准护理检测的回顾性报告
IF 3.2 Pub Date : 2026-01-22 DOI: 10.5858/arpa.2025-0393-CP
Anita J Reddy, Christine Ramsey, Thomas Fraser, Charles B Foster, Michael Fahey, Lauren Fromwiller, Alex Castator, Scott Dwyer, Kimberly Grider, Michael Cruise, Susan Harrington, David Bosler, Daniel D Rhoads

Context.—: The Becton Dickinson BACTEC blood culture media bottle shortage led hospitals to create a mitigation strategy to conserve bottles while ensuring a high quality of care.

Objective.—: To describe how our existing framework of teams was able to quickly pivot to implement conservation strategies without negatively impacting patient care.

Design.—: A team implemented various mitigation measures based on current inventory, which included education, leveraging electronic medical record guidance and alerts with evidence-based information on appropriate ordering, alternative sources of supply, and real-time dashboards to inform next steps.

Results.—: Implementation of educational efforts and alerts resulted in more than 22 000 blood cultures avoided in 6 months, with an increase in blood culture positivity rates by 25%. We did not see any adverse events that impacted the quality of patient care. We observed cost savings of nearly $200 000 in 2024 with these measures.

Conclusions.—: Handling widespread shortages in situations of single suppliers requires rapid assembly of key stakeholders with decision-making authority and support of executive leadership. Existing frameworks of experienced teams quickly assessed the situation, worked on mitigation measures, predicted future challenges, and implemented alternatives to ensure patient care was not disrupted.

上下文。-: Becton Dickinson BACTEC血液培养基瓶短缺促使医院制定缓解策略,在确保高质量护理的同时保存瓶。-:描述我们现有的团队框架如何能够快速转向实施保护策略,而不会对患者护理产生负面影响。-:团队根据当前库存实施了各种缓解措施,其中包括教育、利用电子病历指导和警报,并提供有关适当订购、替代供应来源的循证信息,以及实时仪表板,以通知下一步措施。-:教育工作和警报的实施使6个月内避免了22000多例血培养,血培养阳性率提高了25%。我们没有发现任何影响患者护理质量的不良事件。通过这些措施,我们观察到在2024年节省了近20万美元的成本。-:处理单一供应商普遍短缺的情况需要快速召集关键利益相关者,并在决策权和行政领导的支持下进行决策。由经验丰富的团队组成的现有框架迅速评估了形势,制定了缓解措施,预测了未来的挑战,并实施了替代方案,以确保患者护理不受干扰。
{"title":"A Retrospective Report of a Multi-hospital Health System's Response to Mitigate the 2024 Worldwide Shortage of Blood Culture Media and Maintain Standard-of-Care Testing.","authors":"Anita J Reddy, Christine Ramsey, Thomas Fraser, Charles B Foster, Michael Fahey, Lauren Fromwiller, Alex Castator, Scott Dwyer, Kimberly Grider, Michael Cruise, Susan Harrington, David Bosler, Daniel D Rhoads","doi":"10.5858/arpa.2025-0393-CP","DOIUrl":"https://doi.org/10.5858/arpa.2025-0393-CP","url":null,"abstract":"<p><strong>Context.—: </strong>The Becton Dickinson BACTEC blood culture media bottle shortage led hospitals to create a mitigation strategy to conserve bottles while ensuring a high quality of care.</p><p><strong>Objective.—: </strong>To describe how our existing framework of teams was able to quickly pivot to implement conservation strategies without negatively impacting patient care.</p><p><strong>Design.—: </strong>A team implemented various mitigation measures based on current inventory, which included education, leveraging electronic medical record guidance and alerts with evidence-based information on appropriate ordering, alternative sources of supply, and real-time dashboards to inform next steps.</p><p><strong>Results.—: </strong>Implementation of educational efforts and alerts resulted in more than 22 000 blood cultures avoided in 6 months, with an increase in blood culture positivity rates by 25%. We did not see any adverse events that impacted the quality of patient care. We observed cost savings of nearly $200 000 in 2024 with these measures.</p><p><strong>Conclusions.—: </strong>Handling widespread shortages in situations of single suppliers requires rapid assembly of key stakeholders with decision-making authority and support of executive leadership. Existing frameworks of experienced teams quickly assessed the situation, worked on mitigation measures, predicted future challenges, and implemented alternatives to ensure patient care was not disrupted.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146031984","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Liver Biopsy Features May Help Distinguish Drug-Induced Autoimmune-Like Hepatitis From Idiopathic Autoimmune Hepatitis. 肝活检特征可能有助于区分药物性自身免疫样肝炎和特发性自身免疫性肝炎。
IF 3.2 Pub Date : 2026-01-14 DOI: 10.5858/arpa.2025-0216-OA
Sadhna Dhingra, Peizi Li, Vamsi Maturi, Jiaqiong Xu, Tony El Jabbour, Zhen Zhao, Joseph Odin, Jawad Ahmad, John M Vierling, Thomas D Schiano, M Isabel Fiel

Context.—: Drug-induced autoimmune-like hepatitis (DI-ALH) and idiopathic autoimmune hepatitis (iAIH) share similar clinical, biochemical, serologic, and histologic features. Differentiating between them is crucial for treatment and prognosis.

Objective.—: To identify clinical and histologic factors that distinguish DI-ALH from iAIH and develop a predictive scoring algorithm.

Design.—: We evaluated diagnostic laboratory data and histologic features from index liver biopsies of 14 well-characterized DI-ALH cases and compared them with those from 19 age- and sex-matched iAIH cases. Data included age, sex, autoantibodies (anti-nuclear antibody, anti-smooth muscle antibody), alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP), γ-glutamyl transferase, immunoglobulin G, and total bilirubin (T. Bili). Histologic evaluation included modified Ishak scores, histologic activity index (HAI), type of portal inflammation, zonality of lobular inflammation, plasma cell clusters, cholestasis, bile duct damage, ballooning degeneration, portal endothelialitis, central venulitis, ceroid macrophages, lobular disarray, polyglucosan inclusions, bile duct loss, and ductular reaction. Fibrosis was assessed by using the Scheuer and Ishak systems.

Results.—: A scoring algorithm with weighted scores for ALT above 289.5 U/L, AST above 303.5 U/L, ALP above 119.5 U/L, T. Bili above 0.65 mg/dL, HAI above 9.5, zone 2 sparing, lobular disarray, ballooning degeneration, ceroid macrophages, central venulitis, and advanced Ishak fibrosis yielded a receiver operating characteristic area under the curve of 0.99, with an optimal cutoff score of 6.5 favoring DI-ALH.

Conclusions.—: A scoring algorithm that incorporates specific liver biopsy findings, HAI, and liver biochemistry profiles effectively distinguishes DI-ALH from iAIH.

上下文。药物性自身免疫样肝炎(DI-ALH)和特发性自身免疫性肝炎(iAIH)具有相似的临床、生化、血清学和组织学特征。区分两种类型对治疗和预后至关重要。-:确定区分DI-ALH和iAIH的临床和组织学因素,并开发预测评分算法。我们评估了14例特征明确的DI-ALH病例的诊断实验室数据和组织学特征,并将其与19例年龄和性别匹配的iAIH病例进行了比较。数据包括年龄、性别、自身抗体(抗核抗体、抗平滑肌抗体)、丙氨酸转氨酶(ALT)、天冬氨酸转氨酶(AST)、碱性磷酸酶(ALP)、γ-谷氨酰转移酶、免疫球蛋白G、总胆红素(T. Bili)。组织学评估包括改良Ishak评分、组织学活性指数(HAI)、门静脉炎症类型、小叶炎症的分带性、浆细胞团簇、胆汁淤积、胆管损伤、球囊变性、门静脉内皮炎、中央静脉炎、ceroid巨噬细胞、小叶紊乱、多葡聚糖包裹体、胆管损失和小管反应。采用Scheuer和Ishak系统评估纤维化。-:采用ALT高于289.5 U/L、AST高于303.5 U/L、ALP高于119.5 U/L、T. Bili高于0.65 mg/dL、HAI高于9.5、2区保留、小叶紊乱、球囊性变性、ceroid巨噬细胞、中枢性静脉炎和晚期Ishak纤维化加权评分的评分算法,得出曲线下的受试者工作特征面积为0.99,最佳临界值为6.5。-:一种结合特定肝活检结果、HAI和肝脏生化特征的评分算法,可有效区分DI-ALH和iAIH。
{"title":"Liver Biopsy Features May Help Distinguish Drug-Induced Autoimmune-Like Hepatitis From Idiopathic Autoimmune Hepatitis.","authors":"Sadhna Dhingra, Peizi Li, Vamsi Maturi, Jiaqiong Xu, Tony El Jabbour, Zhen Zhao, Joseph Odin, Jawad Ahmad, John M Vierling, Thomas D Schiano, M Isabel Fiel","doi":"10.5858/arpa.2025-0216-OA","DOIUrl":"https://doi.org/10.5858/arpa.2025-0216-OA","url":null,"abstract":"<p><strong>Context.—: </strong>Drug-induced autoimmune-like hepatitis (DI-ALH) and idiopathic autoimmune hepatitis (iAIH) share similar clinical, biochemical, serologic, and histologic features. Differentiating between them is crucial for treatment and prognosis.</p><p><strong>Objective.—: </strong>To identify clinical and histologic factors that distinguish DI-ALH from iAIH and develop a predictive scoring algorithm.</p><p><strong>Design.—: </strong>We evaluated diagnostic laboratory data and histologic features from index liver biopsies of 14 well-characterized DI-ALH cases and compared them with those from 19 age- and sex-matched iAIH cases. Data included age, sex, autoantibodies (anti-nuclear antibody, anti-smooth muscle antibody), alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP), γ-glutamyl transferase, immunoglobulin G, and total bilirubin (T. Bili). Histologic evaluation included modified Ishak scores, histologic activity index (HAI), type of portal inflammation, zonality of lobular inflammation, plasma cell clusters, cholestasis, bile duct damage, ballooning degeneration, portal endothelialitis, central venulitis, ceroid macrophages, lobular disarray, polyglucosan inclusions, bile duct loss, and ductular reaction. Fibrosis was assessed by using the Scheuer and Ishak systems.</p><p><strong>Results.—: </strong>A scoring algorithm with weighted scores for ALT above 289.5 U/L, AST above 303.5 U/L, ALP above 119.5 U/L, T. Bili above 0.65 mg/dL, HAI above 9.5, zone 2 sparing, lobular disarray, ballooning degeneration, ceroid macrophages, central venulitis, and advanced Ishak fibrosis yielded a receiver operating characteristic area under the curve of 0.99, with an optimal cutoff score of 6.5 favoring DI-ALH.</p><p><strong>Conclusions.—: </strong>A scoring algorithm that incorporates specific liver biopsy findings, HAI, and liver biochemistry profiles effectively distinguishes DI-ALH from iAIH.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145991928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phenotype-Driven In Silico Proficiency Testing Represents a Viable Approach for Undiagnosed Disorders by Exome Sequencing. 表型驱动的硅能力测试代表了一种可行的方法外显子组测序未诊断的疾病。
IF 3.2 Pub Date : 2026-01-13 DOI: 10.5858/arpa.2025-0116-CP
Ryan J Schmidt, Birgit Funke, Ann King, Jaimie Halley, Madhuri Hegde, Eric Konnick, Matthew Lebo, Nicole Mot, Avni Santani, Karl Voelkerding, Marco L Leung

Context.—: In silico mutagenesis can be performed to introduce variants into next-generation sequencing data. This method holds potential promise for proficiency testing since rare or novel variants can be modeled that are not found in available proficiency testing materials.

Objective.—: To determine whether in silico mutagenesis could be used as a viable proficiency testing methodology for undiagnosed disorders by exome sequencing.

Design.—: Laboratories performed exome sequencing on reference samples and uploaded raw sequence data files to the College of American Pathologists. These files were then mutagenized in silico to introduce variants, including those deemed to be causative for the clinical scenario provided. The laboratories processed the mutagenized files through their bioinformatic pipelines and performed interpretation to identify pathogenic and likely pathogenic primary and secondary findings. Responses were evaluated for concordance with intended responses.

Results.—: A total of 7 educational (nongraded) proficiency testing challenges were performed between 2018 and 2021. An average of 47 laboratories participated in each program, which each containing between 2 to 5 (average = 3.6) intended response variants. Intended response variant types included substitutions and small insertion/deletion variants. Participating laboratories returned 94.3% of intended response variants across all programs on average (per program range, 91.5%-97.3%). The percentage of laboratories that correctly returned all intended response variants for a program ranged from 70.0% to 96.7%.

Conclusions.—: In silico mutagenesis represents a suitable approach for graded intended response-based proficiency testing for exome sequencing that allows laboratories to assess both analytical and interpretative components of the test.

上下文。-:在硅诱变可以执行引入变异到下一代测序数据。这种方法对能力测试有潜在的希望,因为在现有的能力测试材料中没有发现的罕见或新颖的变体可以被建模。目的:通过外显子组测序,确定基因突变是否可以作为一种可行的能力测试方法,用于未诊断的疾病。-:实验室对参考样本进行外显子组测序,并将原始序列数据文件上传到美国病理学家学院。然后,这些文件在计算机中被诱变以引入变异,包括那些被认为是临床场景的病因。实验室通过其生物信息学管道处理诱变文件,并进行解释以确定致病性和可能致病性的主要和次要发现。评估反应与预期反应的一致性。-:在2018年至2021年期间,共进行了7次教育(非分级)能力测试挑战。每个项目平均有47个实验室参与,每个项目包含2到5个(平均= 3.6)预期响应变量。预期的响应变体类型包括替换和小的插入/删除变体。参与实验室在所有项目中平均返回了94.3%的预期响应变量(每个项目范围为91.5%-97.3%)。正确返回程序所有预期响应变量的实验室百分比范围为70.0%至96.7%。-:硅诱变是一种适合于外显子组测序的分级预期反应能力测试的方法,允许实验室评估测试的分析和解释成分。
{"title":"Phenotype-Driven In Silico Proficiency Testing Represents a Viable Approach for Undiagnosed Disorders by Exome Sequencing.","authors":"Ryan J Schmidt, Birgit Funke, Ann King, Jaimie Halley, Madhuri Hegde, Eric Konnick, Matthew Lebo, Nicole Mot, Avni Santani, Karl Voelkerding, Marco L Leung","doi":"10.5858/arpa.2025-0116-CP","DOIUrl":"https://doi.org/10.5858/arpa.2025-0116-CP","url":null,"abstract":"<p><strong>Context.—: </strong>In silico mutagenesis can be performed to introduce variants into next-generation sequencing data. This method holds potential promise for proficiency testing since rare or novel variants can be modeled that are not found in available proficiency testing materials.</p><p><strong>Objective.—: </strong>To determine whether in silico mutagenesis could be used as a viable proficiency testing methodology for undiagnosed disorders by exome sequencing.</p><p><strong>Design.—: </strong>Laboratories performed exome sequencing on reference samples and uploaded raw sequence data files to the College of American Pathologists. These files were then mutagenized in silico to introduce variants, including those deemed to be causative for the clinical scenario provided. The laboratories processed the mutagenized files through their bioinformatic pipelines and performed interpretation to identify pathogenic and likely pathogenic primary and secondary findings. Responses were evaluated for concordance with intended responses.</p><p><strong>Results.—: </strong>A total of 7 educational (nongraded) proficiency testing challenges were performed between 2018 and 2021. An average of 47 laboratories participated in each program, which each containing between 2 to 5 (average = 3.6) intended response variants. Intended response variant types included substitutions and small insertion/deletion variants. Participating laboratories returned 94.3% of intended response variants across all programs on average (per program range, 91.5%-97.3%). The percentage of laboratories that correctly returned all intended response variants for a program ranged from 70.0% to 96.7%.</p><p><strong>Conclusions.—: </strong>In silico mutagenesis represents a suitable approach for graded intended response-based proficiency testing for exome sequencing that allows laboratories to assess both analytical and interpretative components of the test.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145968078","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Decade of Impact: Outcomes and Opportunities From the College of American Pathologists Foundation Grants and Awards Program. 十年的影响:美国病理学家基金会资助和奖励计划的结果和机会。
IF 3.2 Pub Date : 2025-12-30 DOI: 10.5858/arpa.2025-0461-OA
Samir Atiya, Rebecca Reese, Curtiss Johnson, Julia Rankenburg, Tengfei Wang, Aadil Ahmed

Context.—: Pathology is essential to global health care, yet disparities remain in access to education and training. The College of American Pathologists (CAP) Foundation addresses these gaps through grants and awards that support trainees, early-career pathologists, and initiatives promoting equity worldwide. Since 2015, total funding has increased from $18,400 to $84,098, an astounding 357%.

Objective.—: To evaluate the CAP Foundation Grants and Awards Program during a 10-year period, assessing financial investment, award distribution, recipient characteristics, and impact.

Design.—: A mixed-methods retrospective study integrated (1) quantitative analysis of program data, (2) qualitative feedback from awardees, and (3) a quantitative award impact survey of past CAP Foundation awardees. Variables included demographics, award type, funding amounts, geographic distribution, and career stage. Surveys assessed professional development, mentorship, and long-term engagement with CAP.

Results.—: From 2015 to 2024, a total of 744 applicants submitted 760 applications, resulting in 355 awards across 14 categories. Applications increased more than 8-fold, peaking in 2023, with surges during the COVID-19 pandemic. Medical student applications grew from 1 in 2020 to 17 in 2024 (76% annual growth); 9 of 12 Medical Student Travel Award recipients (75%) entered pathology residency. Geographic disparities were noted, with smaller residency programs showing higher per capita application rates. Among 174 survey respondents, 129 (74%) reported networking benefits, 127 (73%) learning benefits, and 99 (57%) mentorship benefits, though only 49 (28%) sustained long-term mentoring relationships.

Conclusions.—: The CAP Foundation's awards program has expanded access, supported career development, and fostered future pathologists. Strengthening long-term mentorship and bridging education-to-practice gaps may further enhance its impact.

上下文。-:病理学对全球卫生保健至关重要,但在获得教育和培训方面仍然存在差距。美国病理学家学会(CAP)基金会通过资助和奖励来解决这些差距,这些资助和奖励支持实习生、早期职业病理学家和促进全球公平的倡议。自2015年以来,总资金从18400美元增加到84098美元,增幅达到惊人的357%。-:在10年期间评估CAP基金资助和奖励计划,评估财政投资、奖励分配、接受者特征和影响。-:一项混合方法的回顾性研究,包括(1)对项目数据的定量分析,(2)获奖者的定性反馈,以及(3)对过去CAP基金会获奖者的定量奖励影响调查。变量包括人口统计、奖励类型、资助金额、地理分布和职业阶段。调查评估了专业发展、指导和长期参与cap的结果。从2015年到2024年,共有744名申请者提交了760份申请,获得了14个类别的355个奖项。申请量增加了8倍多,在2023年达到峰值,在2019冠状病毒病大流行期间激增。医学生申请人数从2020年的1人增加到2024年的17人(年增长率为76%);12名医学生旅行奖获得者中有9名(75%)进入了病理学实习。地域差异被注意到,较小的住院医师项目显示出较高的人均申请率。在174名受访者中,129人(74%)报告了人际关系的好处,127人(73%)报告了学习的好处,99人(57%)报告了师徒关系的好处,尽管只有49人(28%)保持了长期的师徒关系。-: CAP基金会的奖励计划扩大了机会,支持了职业发展,培养了未来的病理学家。加强长期指导和弥合教育与实践之间的差距可能会进一步增强其影响。
{"title":"A Decade of Impact: Outcomes and Opportunities From the College of American Pathologists Foundation Grants and Awards Program.","authors":"Samir Atiya, Rebecca Reese, Curtiss Johnson, Julia Rankenburg, Tengfei Wang, Aadil Ahmed","doi":"10.5858/arpa.2025-0461-OA","DOIUrl":"https://doi.org/10.5858/arpa.2025-0461-OA","url":null,"abstract":"<p><strong>Context.—: </strong>Pathology is essential to global health care, yet disparities remain in access to education and training. The College of American Pathologists (CAP) Foundation addresses these gaps through grants and awards that support trainees, early-career pathologists, and initiatives promoting equity worldwide. Since 2015, total funding has increased from $18,400 to $84,098, an astounding 357%.</p><p><strong>Objective.—: </strong>To evaluate the CAP Foundation Grants and Awards Program during a 10-year period, assessing financial investment, award distribution, recipient characteristics, and impact.</p><p><strong>Design.—: </strong>A mixed-methods retrospective study integrated (1) quantitative analysis of program data, (2) qualitative feedback from awardees, and (3) a quantitative award impact survey of past CAP Foundation awardees. Variables included demographics, award type, funding amounts, geographic distribution, and career stage. Surveys assessed professional development, mentorship, and long-term engagement with CAP.</p><p><strong>Results.—: </strong>From 2015 to 2024, a total of 744 applicants submitted 760 applications, resulting in 355 awards across 14 categories. Applications increased more than 8-fold, peaking in 2023, with surges during the COVID-19 pandemic. Medical student applications grew from 1 in 2020 to 17 in 2024 (76% annual growth); 9 of 12 Medical Student Travel Award recipients (75%) entered pathology residency. Geographic disparities were noted, with smaller residency programs showing higher per capita application rates. Among 174 survey respondents, 129 (74%) reported networking benefits, 127 (73%) learning benefits, and 99 (57%) mentorship benefits, though only 49 (28%) sustained long-term mentoring relationships.</p><p><strong>Conclusions.—: </strong>The CAP Foundation's awards program has expanded access, supported career development, and fostered future pathologists. Strengthening long-term mentorship and bridging education-to-practice gaps may further enhance its impact.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145859599","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pancreatobiliary Maljunction: Clinical Features, Diagnosis, and Associated Conditions. 胰胆管畸形:临床特征、诊断和相关情况。
IF 3.2 Pub Date : 2025-12-30 DOI: 10.5858/arpa.2025-0394-RA
Joo Young Kim, Seung Soo Lee, Tae Jun Song, Seung-Mo Hong

Context.—: Pancreatobiliary maljunction (PBM) is a congenital malformation characterized by the pancreatic and common bile ducts joining anatomically outside the duodenal wall, resulting in the formation of a long common channel. PBM-associated conditions include choledochal cysts and reflux-associated cholecystopathy. Precursor lesions, such as biliary intraepithelial neoplasias, intraductal papillary neoplasms of the bile duct, intracholecystic papillary neoplasms, and cancers associated with PBM, occur in the gallbladder, bile duct, and pancreas. Most PBM cases, along with their associated conditions, precursor lesions, and cancers, have been reported in Asian countries, including Japan and South Korea. However, recent studies have shown no significant difference in frequency between Eastern and Western populations.

Objective.—: To summarize the current understanding of PBMs, as well as recent developments related to associated precursor lesions and cancers.

Data sources.—: To understand the clinicopathologic characteristics of PBMs and their associated precursor lesions and cancers, reports from PubMed (US National Library of Medicine) were reviewed.

Conclusions.—: PBM is a congenital malformation diagnosed primarily by gastroenterologists and radiologists. Pathologists diagnose PBM-associated conditions, including choledochal cysts and reflux-associated cholecystopathy. PBM-related precursor lesions and cancers can develop in the gallbladder, bile duct, and pancreas. Therefore, understanding PBM-associated conditions is crucial for the early detection and effective treatment of patients with PBM-related cancers.

上下文。-:胰胆畸形(PBM)是一种先天性畸形,其特征是胰腺和胆总管在十二指肠壁外解剖连接,导致形成一条长长的胆总管。pbm相关的疾病包括胆总管囊肿和反流相关的胆囊病。胆道上皮内肿瘤、胆管导管内乳头状肿瘤、胆囊内乳头状肿瘤和与PBM相关的癌症等前驱病变可发生在胆囊、胆管和胰腺。大多数PBM病例及其相关病症、前体病变和癌症都发生在亚洲国家,包括日本和韩国。然而,最近的研究表明,在东西方人群中,这种频率没有显著差异。-:总结目前对PBMs的认识,以及与相关前体病变和癌症相关的最新进展。数据源。为了了解PBMs的临床病理特征及其相关的前体病变和癌症,我们回顾了PubMed(美国国家医学图书馆)的报告。PBM是一种先天性畸形,主要由胃肠病学家和放射科医生诊断。病理学家诊断pbm相关的疾病,包括胆总管囊肿和反流相关的胆囊病。pbm相关的前驱病变和癌症可发生在胆囊、胆管和胰腺。因此,了解pbm相关疾病对于pbm相关癌症患者的早期发现和有效治疗至关重要。
{"title":"Pancreatobiliary Maljunction: Clinical Features, Diagnosis, and Associated Conditions.","authors":"Joo Young Kim, Seung Soo Lee, Tae Jun Song, Seung-Mo Hong","doi":"10.5858/arpa.2025-0394-RA","DOIUrl":"https://doi.org/10.5858/arpa.2025-0394-RA","url":null,"abstract":"<p><strong>Context.—: </strong>Pancreatobiliary maljunction (PBM) is a congenital malformation characterized by the pancreatic and common bile ducts joining anatomically outside the duodenal wall, resulting in the formation of a long common channel. PBM-associated conditions include choledochal cysts and reflux-associated cholecystopathy. Precursor lesions, such as biliary intraepithelial neoplasias, intraductal papillary neoplasms of the bile duct, intracholecystic papillary neoplasms, and cancers associated with PBM, occur in the gallbladder, bile duct, and pancreas. Most PBM cases, along with their associated conditions, precursor lesions, and cancers, have been reported in Asian countries, including Japan and South Korea. However, recent studies have shown no significant difference in frequency between Eastern and Western populations.</p><p><strong>Objective.—: </strong>To summarize the current understanding of PBMs, as well as recent developments related to associated precursor lesions and cancers.</p><p><strong>Data sources.—: </strong>To understand the clinicopathologic characteristics of PBMs and their associated precursor lesions and cancers, reports from PubMed (US National Library of Medicine) were reviewed.</p><p><strong>Conclusions.—: </strong>PBM is a congenital malformation diagnosed primarily by gastroenterologists and radiologists. Pathologists diagnose PBM-associated conditions, including choledochal cysts and reflux-associated cholecystopathy. PBM-related precursor lesions and cancers can develop in the gallbladder, bile duct, and pancreas. Therefore, understanding PBM-associated conditions is crucial for the early detection and effective treatment of patients with PBM-related cancers.</p>","PeriodicalId":93883,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145859616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Archives of pathology & laboratory medicine
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