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Sex determination and gonadal sex differentiation in the chicken model. 鸡模型的性别决定和性腺性别分化。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170319cs
Claire E Hirst, Andrew T Major, Craig A Smith

Our understanding of avian sex determination and gonadal development is derived primarily from the studies in the chicken. Analysis of gynandromorphic chickens and experimental chimeras indicate that sexual phenotype is at least partly cell autonomous in the chicken, with sexually dimorphic gene expression occurring in different tissue and different stages. Gonadal sex differentiation is just one of the many manifestations of sexual phenotype. As in other birds, the chicken has a ZZ male: ZW female sex chromosome system, in which the male is the homogametic sex. Most evidence favours a Z chromosome dosage mechanism underling chicken sex determination, with little evidence of a role for the W chromosome. Indeed, the W appears to harbour a small number of genes that are un-related to sexual development, but have been retained because they are dosage sensitive factors. As global Z dosage compensation is absent in birds, Z-linked genes may direct sexual development in different tissues (males having on average 1.5 to 2 times the expression level of females). In the embryonic gonads, the Z-linked DMRT1 gene plays a key role in testis development. Beyond the gonads, other combinations of Z-linked genes may govern sexual development, together with a role for sex steroid hormones. Gonadal DMRT1 is thought to activate other players in testis development, namely SOX9 and AMH, and the recently identified HEMGN gene. DMRT1 also represses ovarian pathway genes, such as FOXL2 and CYP19A1. A lower level of DMRT1 expression in the female gonads is compatible with activation of the ovarian pathway. Some outstanding questions include how the key testis and ovary genes, DMRT1 and FOXL2, are regulated. In addition, confirmation of the central role of these genes awaits genome editing approaches.

我们对鸟类性别决定和性腺发育的认识主要来源于对鸡的研究。对雌雄同体鸡和实验嵌合体的分析表明,鸡的性表型至少部分是细胞自主的,性二态基因的表达发生在不同组织和不同阶段。性腺性别分化只是性表型的众多表现之一。和其他鸟类一样,鸡的性染色体系统为ZZ雄性:ZW雌性,其中雄性为同卵性。大多数证据支持鸡性别决定的Z染色体剂量机制,很少有证据表明W染色体的作用。事实上,W型基因似乎含有少量与性发育无关的基因,但由于它们是剂量敏感因素而被保留了下来。由于鸟类缺乏全局的Z剂量补偿,因此Z连锁基因可能在不同组织中指导性发育(雄性的表达水平平均为雌性的1.5 - 2倍)。在胚胎性腺中,z连锁的DMRT1基因在睾丸发育中起着关键作用。除了性腺,其他z连锁基因的组合可能与性类固醇激素一起控制性发育。性腺DMRT1被认为激活睾丸发育中的其他参与者,即SOX9和AMH,以及最近发现的HEMGN基因。DMRT1也抑制卵巢通路基因,如FOXL2和CYP19A1。DMRT1在女性性腺中的低水平表达与卵巢通路的激活是相容的。一些悬而未决的问题包括睾丸和卵巢的关键基因DMRT1和FOXL2是如何调控的。此外,这些基因的核心作用有待基因组编辑方法的证实。
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引用次数: 51
Illuminating the chicken model through genetic modification. 通过基因改造照亮鸡模型。
Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170323mm
Megan G Davey, Adam Balic, Joe Rainger, Helen M Sang, Michael J McGrew

After decades of research investment, techniques for the robust and efficient modification of the chicken genome are now with us. The biology of the chicken has provided many challenges, as have the methods by which transgenes can be readily, stably and functionally integrated into the genome. Now that these obstacles have been surmounted and the chicken has been 'updated' to a cutting-edge modern model organism, a future as a central and versatile model in developmental biology beckons. In this review, we describe recent advances in genetic modification of the chicken and some of the many transgenic models developed for the elucidation of the mechanisms of embryogenesis.

经过几十年的研究投资,对鸡基因组进行强大而有效的修改的技术现在已经出现了。鸡的生物学提供了许多挑战,正如转基因可以容易地、稳定地和功能性地整合到基因组中的方法一样。现在,这些障碍已经被克服,鸡已经被“更新”为一种尖端的现代模式生物,未来将成为发育生物学的中心和多功能模式。本文综述了近年来在鸡基因改造方面的研究进展,以及为阐明鸡胚发生机制而建立的一些转基因模型。
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引用次数: 0
Chicken genomics. 鸡基因组学。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170276yc
Yuanyuan Cheng, David W Burt

As one of the most economically important species and a unique model organism for biological and medical research, the chicken represents the first non-mammalian amniotic species to have its genome sequenced; and so far, the chicken reference genome represents the best assembled and annotated avian genome. Since the release of the first draft genome sequence, the chicken genome assembly has improved greatly in coverage, contiguity and accuracy owing to the continuous efforts made by the chicken genomics community to generate extensive new data using novel sequencing technologies. Transcriptome sequencing, especially the recent effort to characterise full-length transcripts in chicken tissues, has provided key insights into the complexity of structure and function of the chicken genome. In this article, we review the progress in chicken genome assembly and annotation, and recent advances in comparative genomics in birds. Limitations of current data and plans of research are also discussed.

鸡是经济上最重要的物种之一,也是生物学和医学研究的独特模式生物,是第一个完成基因组测序的非哺乳动物羊膜物种;到目前为止,鸡的参考基因组代表了最好的组装和注释鸟类基因组。自第一个基因组序列草图发布以来,由于鸡基因组学社区不断努力使用新的测序技术产生广泛的新数据,鸡基因组组装在覆盖率、连续性和准确性方面有了很大的提高。转录组测序,特别是最近对鸡组织中全长转录本的描述,为了解鸡基因组结构和功能的复杂性提供了关键的见解。本文综述了鸡基因组组装和注释的研究进展,以及鸟类比较基因组学研究的最新进展。讨论了现有数据的局限性和研究计划。
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引用次数: 7
Chick muscle development. 小鸡肌肉发育。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170312cm
Martin Scaal, Christophe Marcelle

Striated muscle is the most abundant tissue in the body of vertebrates and it forms, together with the skeleton, the locomotory system required both for movement and the creation of the specific body shape of a species. Research on the embryonic development of muscles has a long tradition both in classical embryology and in molecular developmental biology. While the gene networks regulating muscle development have been discovered mostly in the mouse through genetics, our knowledge on cell lineages, muscle morphogenesis and tissue interactions regulating their formation is to a large extent based on the use of the avian model. This review highlights present knowledge of the development of skeletal muscle in vertebrate embryos. Special focus will be placed on the contributions from chicken and quail embryo model systems.

横纹肌是脊椎动物体内最丰富的组织,它与骨骼一起形成了运动系统,这是一个物种运动和创造特定体型所必需的。无论是经典胚胎学还是分子发育生物学,对肌肉胚胎发育的研究都有着悠久的传统。虽然调节肌肉发育的基因网络主要是通过遗传学在小鼠中发现的,但我们对细胞系、肌肉形态发生和调节其形成的组织相互作用的认识在很大程度上是基于对鸟类模型的使用。这篇综述强调了目前对脊椎动物胚胎中骨骼肌发育的了解。特别的重点将放在鸡和鹌鹑胚胎模型系统的贡献。
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引用次数: 16
Early hematopoietic and vascular development in the chick. 鸡早期造血和血管发育。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170291gs
Hiroki Nagai, Masahiro Shin, Wei Weng, Fumie Nakazawa, Lars Martin Jakt, Cantas Alev, Guojun Sheng

The field of hematopoietic and vascular developmental research owes its origin to the chick embryo. Many key concepts, such as the hematopoietic stem cell, hemangioblast and hemogenic endothelium, were first proposed in this model organism. Genetically tractable models have gradually replaced the chick in the past two decades. However, advances in comparative genomics, transcriptomics and promoteromics promise a re-emergence of the chick embryo as a powerful model for hematopoietic/vascular research. This review summarizes the current status of our understanding of early blood/vascular development in the chick, focusing primarily on the processes of primitive hematopoiesis and early vascular network formation in the extraembryonic and lateral plate mesoderm territories. Emphasis is given to ontological and molecular association between the blood and endothelial cells and to the evolutionary relationship between the hemangioblasts, common precursors for the blood and endothelial lineages, and the coelomic epithelial lining cells. Links between early blood/vascular development and later definitive hematopoiesis are also discussed. Finally, potential applications of the chick model for comparative and omics-level studies of the blood/vascular system are highlighted.

造血和血管发育研究领域的起源要归功于鸡胚。许多关键概念,如造血干细胞、成血管细胞和造血内皮,都是在这种模式生物中首次提出的。在过去的二十年里,基因上易于控制的模型逐渐取代了小鸡。然而,随着比较基因组学、转录组学和启动子组学的进步,小鸡胚胎有望重新成为造血/血管研究的有力模型。本文综述了目前我们对鸡早期血液/血管发育的认识现状,主要集中在胚胎外和外侧板中胚层区域的原始造血和早期血管网络形成过程。重点是血液和内皮细胞之间的本体论和分子联系,以及血管母细胞(血液和内皮细胞的共同前体)与体腔上皮内衬细胞之间的进化关系。还讨论了早期血液/血管发育与后期决定性造血之间的联系。最后,强调了鸡模型在血液/血管系统的比较和组学水平研究中的潜在应用。
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引用次数: 8
Avian models and the study of invariant asymmetry: how the chicken and the egg taught us to tell right from left. 鸟类模型和不变不对称的研究:鸡和蛋如何教会我们分辨左右。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.180047ml
Anne H Monsoro-Burq, Michael Levin

While the external vertebrate body plan appears bilaterally symmetrical with respect to anterior-posterior and dorsal-ventral axes, the internal organs are arranged with a striking and invariant left-right asymmetry. This laterality is important for normal body function, as alterations manifest as numerous human birth defect syndromes. The left-right axis is set up very early during embryogenesis by an initial and still poorly understood break in bilateral symmetry, followed by a cascade of molecular events that was discovered 20 years ago in the chick embryo model. This gene regulatory network leads to activation of the pitx2 gene on the left side of the embryo which ultimately establishes asymmetric organogenesis of the heart, gut, brain, and other organs. In this review, we highlight the crucial contributions of the avian model to the discovery of the differential transcriptional cascades operating on the Left and Right sides, as well as to the physiological events operating upstream of asymmetric gene expression. The chick was not only instrumental in the discovery of mechanisms behind left-right patterning, but stands poised to facilitate inroads into the most fundamental aspects that link asymmetry to the rest of evolutionary developmental biology.

虽然外部脊椎动物的身体平面相对于前后轴和背腹轴似乎是两侧对称的,但内部器官的排列却具有显著且不变的左右不对称。这种侧边对正常的身体功能很重要,因为许多人类出生缺陷综合征都表现出这种改变。左右轴是在胚胎发生的早期建立起来的,这是由于最初的双边对称的破坏,人们对这种破坏知之甚少,随后是20年前在鸡胚胎模型中发现的一系列分子事件。这种基因调控网络导致胚胎左侧pitx2基因的激活,最终建立心脏、肠道、大脑和其他器官的不对称器官发生。在这篇综述中,我们强调了鸟类模型在发现左右两侧的差异转录级联反应以及不对称基因表达上游的生理事件方面的重要贡献。这只小鸡不仅有助于发现左右模式背后的机制,而且还有助于研究将不对称与进化发育生物学的其他部分联系起来的最基本方面。
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引用次数: 14
Pluripotency in avian species. 鸟类的多能性。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170322bp
Bertrand Pain, Clémence Kress, Sylvie Rival-Gervier

Pluripotency defines the ability of a cell to self-renew and to differentiate into all embryonic lineages both in vitro and in vivo. This definition was first established mainly with the mouse model and the establishment of mouse embryonic stem cells (ESCs) in the 1980's and extended later on to other species including non-human primates and humans. Similarly, chicken ESCs were derived and established in vitro from pregastrulating embryos leading to cells with unique properties at molecular, epigenetic and developmental levels. By comparing the properties of murine, mammalian and avian ESCs and of the more recently discovered induced pluripotential stem (iPS)-derived cells generated in all of these species, avian specificities start to emerge including specific molecular genes, epigenetic mark profiles and original developmental properties. Here, we present common, but also avian-specific elements that contribute to defining avian pluripotency.

多能性定义了细胞在体外和体内自我更新和分化为所有胚胎谱系的能力。这一定义最初主要是在20世纪80年代小鼠模型和小鼠胚胎干细胞(ESCs)的建立中建立起来的,后来扩展到包括非人类灵长类动物和人类在内的其他物种。同样,鸡ESCs是在体外从原胚中获得并建立的,其细胞在分子、表观遗传和发育水平上具有独特的特性。通过比较小鼠、哺乳动物和鸟类ESCs的特性,以及最近在所有这些物种中发现的诱导多能干细胞(iPS)衍生细胞的特性,鸟类的特异性开始出现,包括特定的分子基因、表观遗传标记谱和原始发育特性。在这里,我们提出了共同的,但也有鸟类特有的元素,有助于定义鸟类多能性。
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引用次数: 4
Coordination between body growth and tissue growth: Wolffian duct elongation and somitogenesis proceed in harmony with axial growth. 机体生长和组织生长之间的协调:沃尔夫管伸长和躯体发生与轴向生长协调进行。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170290yt
Yoshiko Takahashi, Ryo Kudo, Ryosuke Tadokoro, Yuji Atsuta

During embryogenesis, different tissues develop coordinately, and this coordination is often in harmony with body growth. Recent studies allow us to understand how this harmonious regulation is achieved at the levels of inter-cellular, inter-tissue, and tissue-body relationships. Here, we present an overview of recently revealed mechanisms by which axial growth (tail growth) drives a variety of morphogenetic events, with a focus on the coordinated progression between Wolffian (nephric) duct elongation and somitogenesis. We also discuss how we can relate this coordination to the events occurring during limb bud outgrowth, since the limb buds and tail bud are appendage anlagen acquired during vertebrate evolution, both of which undergo massive elongation/outgrowth.

在胚胎发生过程中,不同的组织协调发展,这种协调往往与身体的生长相协调。最近的研究使我们能够理解这种和谐的调节是如何在细胞间、组织间和组织-体关系的水平上实现的。在这里,我们概述了最近揭示的轴向生长(尾部生长)驱动各种形态发生事件的机制,重点关注Wolffian(肾)导管伸长和体细胞发生之间的协调进展。我们还讨论了如何将这种协调与肢芽生长过程中发生的事件联系起来,因为肢芽和尾芽是脊椎动物进化过程中获得的附属物原,两者都经历了大量的伸长/生长。
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引用次数: 1
Segmentation of the chick central and peripheral nervous systems. 鸡中枢和周围神经系统的分割。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170297rk
Roger Keynes, Geoffrey Cook

The chick embryo has provided a prominent model system for the study of segmental patterning in the nervous system. During early development, motor and sensory axon growth cones traverse the anterior/rostral half of each somite, so avoiding the developing vertebral components and ensuring separation of spinal nerves from vertebral bones. A glycoprotein expressed on the surface of posterior half-somite cells confines growth cones to the anterior half-somites by a contact repulsive mechanism. Hindbrain segmentation is also a conspicuous feature of chick brain development. We review how its contemporary analysis was initiated in the chick embryo, and the advantages the chick system continues to provide in its detailed elucidation at both molecular and neural circuit levels.

鸡胚为神经系统节段模式的研究提供了一个重要的模型系统。在发育早期,运动和感觉轴突生长锥穿过每个体突的前/吻侧半部,因此避免了发育中的椎体成分,并确保了脊神经与椎骨的分离。后半体细胞表面表达的糖蛋白通过接触排斥机制将生长锥限制在前半体。后脑分割也是小鸡脑发育的一个显著特征。我们回顾了它的当代分析是如何在鸡胚胎中开始的,以及鸡系统继续在分子和神经回路水平上提供详细阐明的优势。
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引用次数: 2
Developmental studies of avian brain organization. 鸟类大脑组织的发育研究。
IF 0.7 Pub Date : 2018-01-01 DOI: 10.1387/ijdb.170279LP
Luis Puelles

Avian brain organization or brain Bauplan is identical with that of vertebrates in general. This essay visits avian studies that contained advances or discussions about brain organization, trying to explain critically what they contributed. In order to start from a specific background, the new prevailing paradigm as regards brain organization, the prosomeric model, is presented first. Next a brief historic survey is made of how ideas on this topic evolved from the start of modern neuromorphology at the end of the 19th century. Longitudinal zonal organization with or without transverse segmentation (neuromeres) was the first overall concept applied to the brain. The idea of neuromeric structure later decayed in favour of a columnar model. This emphasized functional correlations rather than causal developmental content, assimilating forebrain functions to hindbrain ones. Though it became prevalent in the post-world-war period of neuroscience, in the last decades of the 20th century advances in molecular biology allowed developmental genes to be mapped, and it became evident that gene expression patterns support the old neuromeric model rather than the columnar one. This was also corroborated by modern experimental approaches (fate-mapping and analysis of patterning).

鸟类的大脑组织或脑包膜与一般脊椎动物的大脑组织相同。这篇文章访问了包含大脑组织的进展或讨论的鸟类研究,试图批判性地解释他们的贡献。为了从一个特定的背景出发,首先提出了关于大脑组织的新的流行范式,即prosomeric模型。接下来,简要回顾一下从19世纪末现代神经形态学兴起以来,关于这一主题的思想是如何演变的。有或没有横向分割(神经粒)的纵向区域性组织是第一个应用于大脑的整体概念。神经细胞结构的观点后来逐渐被柱状模型所取代。这强调功能相关性而不是因果发展内容,将前脑功能同化为后脑功能。虽然它在二战后的神经科学时期变得普遍,但在20世纪最后几十年,分子生物学的进步使发育基因得以绘制,而且很明显,基因表达模式支持旧的神经细胞模型,而不是柱状模型。现代实验方法(命运图和模式分析)也证实了这一点。
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引用次数: 34
期刊
The International journal of developmental biology
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