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Enhancing Lung Cancer Diagnosis: An Optimization-Driven Deep Learning Approach with CT Imaging. 增强肺癌诊断:优化驱动的CT成像深度学习方法。
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-08-01 Epub Date: 2025-06-23 DOI: 10.1080/07357907.2025.2518404
Kasetty Lakshminarasimha, A T Priyeshkumar, M Karthikeyan, Rajalaxmi Sakthivel

Lung cancer (LC) remains a leading cause of mortality worldwide, affecting individuals across all genders and age groups. Early and accurate diagnosis is critical for effective treatment and improved survival rates. Computed Tomography (CT) imaging is widely used for LC detection and classification. However, manual identification can be time-consuming and error-prone due to the visual similarities among various LC types. Deep learning (DL) has shown significant promise in medical image analysis. Although numerous studies have investigated LC detection using deep learning techniques, the effective extraction of highly correlated features remains a significant challenge, thereby limiting diagnostic accuracy. Furthermore, most existing models encounter substantial computational complexity and find it difficult to efficiently handle the high-dimensional nature of CT images. This study introduces an optimized CBAM-EfficientNet model to enhance feature extraction and improve LC classification. EfficientNet is utilized to reduce computational complexity, while the Convolutional Block Attention Module (CBAM) emphasizes essential spatial and channel features. Additionally, optimization algorithms including Gray Wolf Optimization (GWO), Whale Optimization (WO), and the Bat Algorithm (BA) are applied to fine-tune hyperparameters and boost predictive accuracy. The proposed model, integrated with different optimization strategies, is evaluated on two benchmark datasets. The GWO-based CBAM-EfficientNet achieves outstanding classification accuracies of 99.81% and 99.25% on the Lung-PET-CT-Dx and LIDC-IDRI datasets, respectively. Following GWO, the BA-based CBAM-EfficientNet achieves 99.44% and 98.75% accuracy on the same datasets. Comparative analysis highlights the superiority of the proposed model over existing approaches, demonstrating strong potential for reliable and automated LC diagnosis. Its lightweight architecture also supports real-time implementation, offering valuable assistance to radiologists in high-demand clinical environments.

肺癌(LC)仍然是世界范围内死亡的主要原因,影响所有性别和年龄组的个体。早期和准确的诊断对于有效治疗和提高生存率至关重要。计算机断层扫描(CT)成像广泛应用于LC检测和分类。但是,由于各种LC类型之间的视觉相似性,手动识别可能非常耗时且容易出错。深度学习(DL)在医学图像分析中显示出巨大的前景。尽管许多研究已经使用深度学习技术研究了LC检测,但有效提取高度相关的特征仍然是一个重大挑战,从而限制了诊断的准确性。此外,大多数现有模型都遇到了大量的计算复杂性,难以有效地处理CT图像的高维性质。本研究引入了一种优化的CBAM-EfficientNet模型,以增强特征提取和改进LC分类。有效网络被用来降低计算复杂度,而卷积块注意模块(CBAM)强调基本的空间和通道特征。此外,优化算法包括灰狼优化(GWO)、鲸鱼优化(WO)和蝙蝠算法(BA),用于微调超参数,提高预测精度。结合不同的优化策略,在两个基准数据集上对该模型进行了评估。基于gwo的CBAM-EfficientNet在Lung-PET-CT-Dx和LIDC-IDRI数据集上的分类准确率分别达到了99.81%和99.25%。GWO之后,基于ba的CBAM-EfficientNet在相同数据集上的准确率分别达到99.44%和98.75%。对比分析强调了所提出的模型比现有方法的优越性,展示了可靠和自动化LC诊断的强大潜力。它的轻量级架构还支持实时实现,在高要求的临床环境中为放射科医生提供宝贵的帮助。
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引用次数: 0
Tandem Dual CAR-T Cells Targeting HER2 and Mesothelin Enhance anti-Tumor Effects in Pancreatic Cancer. 靶向HER2和间皮素的串联双CAR-T细胞增强胰腺癌的抗肿瘤作用
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-08-01 Epub Date: 2025-08-26 DOI: 10.1080/07357907.2025.2548603
Fengting Jiang, Mei Zheng, Yahong Ding, Feifei Xiong, Xueying Liu, Xu Zhou, Zihou Yan, Jian Luo

The therapeutic application of T cells engineered to express chimeric antigen receptors (CARs) is hindered by the risk of antigen escape in single-target CAR constructs, particularly in the treatment of solid tumors. Pancreatic cancer cells frequently overexpress tumor-associated antigens, such as human epidermal growth factor receptor 2 (HER2) and Mesothelin (Meso). In this study, we therefore investigated the therapeutic effect of tandem dual CAR-T cells co-targeting Her2 and Meso versus single-targeted CAR-T cells in pancreatic cancer models. We constructed a dual CAR by fusing a HER2-binding single-chain variable fragment (ScFv) with a Meso-binding ScFv. The expression levels of CARs and the anti-tumor efficacy of CAR-T cells were systematically compared via in vitro and in vivo experiments. In HER2/Meso co-expressing pancreatic cancer cell lines (AsPC-1 and SW-1990), dual CAR-T cells exhibited superior antitumor activity, accompanied by increased secretion of anti-tumor cytokines (IL-2 and IFN-γ), compare to HER2-specific or Meso-specific single-target CAR-T cells. In a xenograft mouse model, dual CAR-T cells significantly reduced tumor volume and prolonged mouse survival relative to single-target CAR-T cells. Collectively, our findings demonstrated that dual CAR-T cells enhance antitumor cytotoxicity, supporting their potential as a promising therapeutic strategy for Pancreatic Cancer and other solid tumors.

表达嵌合抗原受体(CARs)的T细胞的治疗应用受到单靶点CAR结构中抗原逃逸的风险的阻碍,特别是在治疗实体肿瘤时。胰腺癌细胞经常过度表达肿瘤相关抗原,如人表皮生长因子受体2 (HER2)和间皮素(Meso)。因此,在本研究中,我们在胰腺癌模型中研究了串联双CAR-T细胞共同靶向Her2和Meso与单靶向CAR-T细胞的治疗效果。我们通过将her2结合的单链可变片段(ScFv)与Meso-binding的ScFv融合构建了双CAR。通过体外和体内实验系统比较CAR-T细胞的表达水平和抗肿瘤效果。在HER2/Meso共表达的胰腺癌细胞系(AsPC-1和ws -1990)中,与HER2特异性或Meso特异性单靶点CAR-T细胞相比,双CAR-T细胞表现出更强的抗肿瘤活性,并伴有抗肿瘤细胞因子(IL-2和IFN-γ)的分泌增加。在异种移植小鼠模型中,与单靶CAR-T细胞相比,双靶CAR-T细胞显著减少肿瘤体积,延长小鼠存活时间。总的来说,我们的研究结果表明,双CAR-T细胞增强了抗肿瘤细胞毒性,支持它们作为胰腺癌和其他实体肿瘤的有希望的治疗策略的潜力。
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引用次数: 0
Comparative Evaluation of Serum Irisin Levels in Cancer Patients and Healthy Individuals: A Systematic Review and Meta-Analysis of Diagnostic Evidence. 癌症患者和健康个体血清鸢尾素水平的比较评价:诊断证据的系统回顾和荟萃分析。
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-07-01 Epub Date: 2025-07-17 DOI: 10.1080/07357907.2025.2533267
Rahul Mohandas, Supriya Kheur, Subhashree Mohapatra

Background: Irisin influences key cancer-related processes such as cell proliferation, apoptosis, angiogenesis, and metastasis. This review aimed to evaluate serum irisin's potential in cancer diagnosis, prognosis, and treatment monitoring.

Methods: Databases including Scopus, PubMed, Cochrane, and others were searched. Studies comparing serum irisin in cancer patients and healthy individuals were assessed using Joanna Briggs Institute criteria.

Results: Nine studies showed significantly lower irisin levels in cancer patients (SMD: -1.16, p < 0.0001), especially in hepatocellular and bladder cancers.

Conclusion: Reduced serum irisin may serve as a diagnostic cancer biomarker, though its utility varies by cancer type and requires further research.

Prospero registration no: CRD420250650210.

背景:鸢尾素影响关键的癌症相关过程,如细胞增殖、凋亡、血管生成和转移。本综述旨在评价血清鸢尾素在癌症诊断、预后和治疗监测方面的潜力。方法:检索Scopus、PubMed、Cochrane等数据库。比较癌症患者和健康个体血清鸢尾素的研究使用乔安娜布里格斯研究所的标准进行评估。结果:9项研究显示,癌症患者血清中鸢尾素水平显著降低(SMD: -1.16, p)。结论:血清中鸢尾素水平降低可能作为诊断癌症的生物标志物,但其效用因癌症类型而异,需要进一步研究。普洛斯彼罗注册号:CRD420250650210。
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引用次数: 0
Biomarker Potential of DNA Repair Genes XRCC1, XRCC3 and RAD51 Polymorphisms in Ovarian Cancer Patients. 卵巢癌患者DNA修复基因XRCC1、XRCC3和RAD51多态性的生物标志物潜力
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-07-01 Epub Date: 2025-07-03 DOI: 10.1080/07357907.2025.2524560
Yanni A, Maria Afzal, Sidra Usman, Ayesha Akram, Hanan Nasir, Muhammad Umar, Anisa Iftikhar, Kashif Bashir

Ovarian cancer remains one of the most lethal gynecological malignancies, with a high mortality rate primarily due to late-stage diagnosis. Genetic predispositions play a significant role in its development, alongside environmental and lifestyle factors. The main objective of the study was to check the association of XRCC1, XRCC3, and RAD51 gene polymorphism with ovarian cancer. In the present 300 ovarian cancer patients and 300 healthy controls blood samples collected. The results showed that the heterozygous (GA) genotype of rs25487 SNP shows significant correlation with ovarian cancer with decreased risk of disease (OR = 0.39; 95% CI = 0.17-0.88; p < 0.02), whereas the homozygous variant (AA) genotype of the same SNP exhibits a non-significant relation with ovarian cancer. The combined genotype model of this SNP indicated a highly significant association with increased risk of ovarian cancer by twofold (OR = 2.10;95% CI = 1.22-3.64; p < 0.007). In case of rs861539 heterozygous (CT) showed significant association by increasing the risk of disease almost threefold (OR = 2.73; 95% CI 1.68-4.41; p < 0.0001). while the mutant (TT) of the same SNP showed again significant association but with decreased risk of ovarian cancer (OR = 0.27; 95% CI 0.16-0.47; p < 0.0001). The genotype distribution of the RAD51 gene's SNP (rs1801320) shows that heterozygous (GC) individuals exhibit a significant correlation and increased risk of ovarian cancer by twofold (OR = 2.81;95% CI = 1.72-4.60; p ≤ 0.0001). Conversely, the mutant (CC) of rs1801320 exhibits a significant correlation with a decrease in the risk of ovarian cancer (OR = 0.32; 95% CI = 0.19-0.55; p < 0.0001). In conclusion, the study's findings suggest that a higher chance of ovarian cancer is related to the gene XRCC1, XRCC3, and RAD51 polymorphisms. In this study, SNPs were analyzed for their potential role as biomarkers for the diagnosis of ovarian cancer.

卵巢癌仍然是最致命的妇科恶性肿瘤之一,其高死亡率主要是由于晚期诊断。除了环境和生活方式因素外,遗传易感性在其发展中起着重要作用。本研究的主要目的是检查XRCC1、XRCC3和RAD51基因多态性与卵巢癌的关系。目前采集了300例卵巢癌患者和300例健康对照者的血液样本。结果显示,rs25487 SNP杂合(GA)基因型与卵巢癌发病风险降低有显著相关性(OR = 0.39;95% ci = 0.17-0.88;RAD51基因SNP (rs1801320)显示,杂合子(GC)个体与卵巢癌有显著相关性,卵巢癌风险增加2倍(OR = 2.81;95% CI = 1.72-4.60;p≤0.0001)。相反,rs1801320突变体(CC)与卵巢癌风险降低有显著相关性(OR = 0.32;95% ci = 0.19-0.55;p XRCC1、XRCC3、RAD51多态性。在这项研究中,我们分析了snp作为卵巢癌诊断生物标志物的潜在作用。
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引用次数: 0
Efficacy and Safety of Current Treatment Regimens for Acute Myeloid Leukemia in Elderly Patients. 老年急性髓性白血病现有治疗方案的疗效和安全性。
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-07-01 Epub Date: 2025-07-18 DOI: 10.1080/07357907.2025.2533279
Zinaida Stupakova, Oksana Karnabeda, Konstiantyn Isaiev, Ulyana Melnyk

The purpose of this study was to evaluate the efficacy and safety of Azacitidine, alone or in combination with Venetoclax, in the treatment of newly diagnosed acute myeloid leukemia in patients with significant comorbidities who are ineligible for intensive chemotherapy. Most patients in the cohort had high-risk acute myeloid leukemia based on clinical and cytogenetic characteristics and required low-intensity therapeutic regimens, such as Azacitidine with or without Venetoclax, due to their age and comorbidities. It was shown that 77% of patients treated with hypomethylating agents with the addition of Venetoclax achieved complete remission. In addition, the clinical case of a 61-year-old patient with severe comorbidity status is described in the end of the article. The diagnosis included a transient ischemic attack in the context of an unruptured cerebral aneurysm, for which the patient was not a candidate for thrombolytic therapy, alongside other conditions requiring comprehensive treatment. A limitation of this study was a small sample of patients with acute myeloid leukemia.

本研究的目的是评估阿扎胞苷单独或联合Venetoclax治疗新诊断的急性髓系白血病患者的疗效和安全性,这些患者有明显的合并症,不适合进行强化化疗。基于临床和细胞遗传学特征,该队列中的大多数患者患有高风险急性髓系白血病,由于年龄和合并症,需要低强度治疗方案,如阿扎胞苷加或不加Venetoclax。结果显示,77%的低甲基化药物加Venetoclax治疗的患者达到完全缓解。此外,在文章的末尾描述了一名61岁的严重合并症患者的临床病例。诊断包括在未破裂的脑动脉瘤背景下的短暂性脑缺血发作,该患者不适合溶栓治疗,以及其他需要综合治疗的情况。这项研究的一个局限性是急性髓性白血病患者的小样本。
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引用次数: 0
Evidence-Based Medicine and Complementary and Alternative Medicine - Attitudes and Knowledge of German Medical Students. 循证医学、补充和替代医学——德国医学生的态度和知识。
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-07-01 Epub Date: 2025-08-05 DOI: 10.1080/07357907.2025.2543850
Gianluca Ciarlo, Lena Josfeld, Karsten Muenstedt, Oliver Micke, Jens Buentzel, Bijan Zomorodbakhsch, Michael Klein, Christian Keinki, Jutta Huebner

Usage of complementary and alternative medicine (CAM) is widespread in the population. Accordingly, knowledge on CAM is important for physicians. To learn more on the knowledge during studying medicine, we conducted a web-based survey using a standardized questionnaire among medical students regarding evidence-based medicine (EbM) and CAM. Yet, while 43% marked that they felt able to define EbM, less than a quarter were familiar with CAM. There is a strong contrast between students' agreement to EbM, and the low self-rating of their competences in EbM. Efforts must be increased to educate medical students in the skills of EbM.

补充和替代医学(CAM)的使用在人群中很普遍。因此,CAM知识对医生来说很重要。为了在医学学习过程中了解更多的知识,我们对医学生进行了基于网络的循证医学(EbM)和CAM的标准化问卷调查。然而,尽管43%的人表示他们能够定义EbM,但只有不到四分之一的人熟悉CAM。学生对循证医学的认同与对其循证医学能力的低自我评价形成强烈对比。必须加大对医学生进行循证医学技能教育的力度。
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引用次数: 0
Gene Expression Analysis of Early Stage Changes in Pancreatic Cancer by KrasG12D Transfer in Pancreatic Progenitor-Like Cells. KrasG12D在胰腺祖样细胞中转移胰腺癌早期变化的基因表达分析
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-07-01 Epub Date: 2025-08-06 DOI: 10.1080/07357907.2025.2543849
Eiji Yamato

Objective: The aim of this study is to elucidate the function of Kras, which is involved in the development and progression of pancreatic cancer.

Methods: We have previously isolated pancreas-derived cells from mice and induced genes expressed in pancreatic ducts and exocrine and endocrine cells by expressing transcription factor genes and a plasmid expressing polyoma ori to create cells with stable foreign gene expression. Comprehensive gene analysis was used to analyze the function of Kras by introducing wild-type Kras and mutant Kras into these cells.

Results: No changes in cell morphology were observed with wild-type Kras expression, but expression of mutant Kras led to cystic changes. Mutant Kras gene transfer induced the expression of Mus5ac and Cck genes. Gene expression in these cells was detected by microarray analysis, and comparison of gene profiles showed that the genes promoted amoeboid cell assembly and immunosuppression.

Conclusion: The use of these cells will facilitate screening of drugs that block Kras function and elucidate how Kras induces pancreatic cancer.

目的:探讨Kras基因在胰腺癌发生发展过程中的作用。方法:我们已经从小鼠身上分离出胰腺源性细胞,通过表达转录因子基因和表达多瘤基因的质粒,诱导胰腺管和外分泌和内分泌细胞中表达的基因,从而产生外源基因稳定表达的细胞。通过将野生型和突变型Kras导入这些细胞,采用综合基因分析方法分析Kras的功能。结果:Kras野生型表达对细胞形态无影响,而Kras突变型表达可引起囊性改变。Kras突变体基因转移诱导了Mus5ac和Cck基因的表达。通过芯片分析检测这些细胞中的基因表达,基因谱比较显示这些基因促进阿米巴细胞组装和免疫抑制。结论:利用这些细胞有助于筛选阻断Kras功能的药物,阐明Kras诱导胰腺癌的机制。
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引用次数: 0
Immunomodulation of the Breast Cancer Microenvironment by Tumor-Derived Exosomes: Implications for Immunotherapy. 肿瘤源性外泌体对乳腺癌微环境的免疫调节:对免疫治疗的影响。
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-07-01 Epub Date: 2025-08-07 DOI: 10.1080/07357907.2025.2529878
Sepideh Maralbashi, Cynthia Aslan, Houman Kahroba, Mahsa Javadian, Najibeh Shekari, Elham Safarzadeh, Farhad Salari, Tohid Kazemi

Exosomes are 30-150 nm extracellular vesicles released by nearly all cells, including tumor cells. Cancer cell-derived exosomes carry various molecular contents - proteins, mRNAs, microRNAs- that are transferred to recipient cells, contributing to cancer development, angiogenesis, metastasis, and immune evasion. Breast cancer-derived exosomes (BEXs) express multiple immunomodulatory molecules, particularly the ectoenzymes CD39 and CD73, which catalyze the conversion of adenosine triphosphate (ATP) into adenosine. Adenosine then binds its receptors (ADORs) to transmit immunosuppressive signals. BEXs also express immune checkpoint molecules such as programmed death ligand 1 (PD-L1), CD200, and CD47 that suppress immune surveillance through interaction with programmed cell death protein 1 (PD-1), CD200R, and signal-regulatory protein alpha (SIRPα), respectively. Notably, PD-L1 appears to be more enriched on exosomes than on tumor cell surfaces, underscoring the pivotal role of BEXs in immune regulation. Given their influence on several hallmarks of cancer, BEXs are promising candidates for future diagnostic and therapeutic strategies, particularly in immunotherapy.

外泌体是几乎所有细胞(包括肿瘤细胞)释放的30- 150nm的细胞外囊泡。癌细胞来源的外泌体携带各种分子内容物-蛋白质,mrna, microrna -被转移到受体细胞,促进癌症的发展,血管生成,转移和免疫逃避。乳腺癌源性外泌体(BEXs)表达多种免疫调节分子,特别是催化三磷酸腺苷(ATP)转化为腺苷的外泌酶CD39和CD73。然后腺苷结合它的受体(ADORs)传递免疫抑制信号。bex还表达免疫检查点分子,如程序性死亡配体1 (PD-L1)、CD200和CD47,它们分别通过与程序性细胞死亡蛋白1 (PD-1)、CD200R和信号调节蛋白α (SIRPα)相互作用抑制免疫监视。值得注意的是,PD-L1似乎在外泌体上比在肿瘤细胞表面上更富集,这强调了bex在免疫调节中的关键作用。鉴于它们对癌症的几个特征的影响,bex是未来诊断和治疗策略的有希望的候选者,特别是在免疫治疗中。
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引用次数: 0
The Prognostic Significance of the Serum Inflammatory Marker Ratios, Neutrophil-Lymphocyte, Platelet-Lymphocyte and Monocyte-Lymphocyte in Male Breast Cancer. 血清炎症标志物比值、中性粒细胞-淋巴细胞、血小板-淋巴细胞和单核细胞-淋巴细胞在男性乳腺癌中的预后意义。
IF 1.9 4区 医学 Q3 ONCOLOGY Pub Date : 2025-07-01 Epub Date: 2025-08-12 DOI: 10.1080/07357907.2025.2523908
Dylan P McClurg, Michael Wong, Kirsty Luo-Yng Tay, Gordon Urquhart, Feng-Yi Soh, Abdalla Saad Abdalla Al-Zawi, Yazan Masannat, Beatrix Elsberger, Valerie Speirs

Inflammation contributes to tumorigenesis and can be determined systemically from routine bloods collected through diagnostic workup by quantifying ratios of neutrophils, lymphocytes, platelets and monocytes. Retrospective data from 104 male breast cancer (BC) patients was collected. We measured pre-treatment neutrophil-to-lymphocyte ratio (NLR), platelet-to-lymphocyte ratio (PLR) and monocyte-to-lymphocyte ratio (MLR) and quantitatively evaluated other male BC studies. Prognostic values of NLR and PLR were assessed by overall survival (OS). Elevated NLR (≥3.23) and PLR (≥129.53) were associated with significantly decreased OS. None of the previously reported cutoffs for NLR or PLR were significant when applied to our data. NLR remained associated with worse OS in a quantitative evaluation. Relationship between BMI and pre-operative NLR, PLR, and MLR ratios showed that severely obese patients tended to have higher PLR and MLR values. In conclusion, elevated NLR and PLR were linked to poorer outcomes in male BC. While more precise cut-off values are required to fully understand the potential of these biomarkers in managing BC in men, this study suggests that NLR and PLR may affect prognosis.

炎症有助于肿瘤的发生,可以通过诊断检查收集的常规血液,通过量化中性粒细胞、淋巴细胞、血小板和单核细胞的比例来系统地确定。本文收集了104例男性乳腺癌患者的回顾性资料。我们测量了治疗前中性粒细胞与淋巴细胞比率(NLR)、血小板与淋巴细胞比率(PLR)和单核细胞与淋巴细胞比率(MLR),并定量评估了其他男性BC研究。NLR和PLR的预后价值通过总生存期(OS)进行评估。NLR(≥3.23)和PLR(≥129.53)升高与OS显著降低相关。当应用于我们的数据时,以前报道的NLR或PLR的截止值都不显著。在定量评估中,NLR仍与较差的OS相关。BMI与术前NLR、PLR、MLR比值的关系显示,重度肥胖患者的PLR、MLR值往往较高。总之,NLR和PLR升高与男性BC预后较差有关。虽然需要更精确的临界值来充分了解这些生物标志物在管理男性BC中的潜力,但本研究表明NLR和PLR可能影响预后。
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引用次数: 0
Overexpression FARSB Reveals Poor Prognosis in Breast Cancer and is Correlated with Immunity. FARSB在乳腺癌中过表达提示预后不良并与免疫相关
IF 1.8 4区 医学 Q3 ONCOLOGY Pub Date : 2025-05-01 Epub Date: 2025-06-11 DOI: 10.1080/07357907.2025.2512379
Yueming Hu, Ting Liu, Li Tian, Bohai Cao, Jinheng Xu

Background: FARSB is a β-regulatory subunit of phenylalanine tRNA synthetase. It is reported that FARSB was involved in cancer progression. However, the molecular function of FARSB in breast cancer was unclear. This study aimed to investigate the prognostic significance of FARSB expression and its relationship with immunity in breast cancer.

Methods: Several databases, including TCGA, HPA, and UALCAN database, were applied to study FARSB mRNA and protein expression and its association with aggressiveness in breast cancer. We used immunohistochemical staining (IHC) to study FARSB expression in breast cancer and normal tissues. Chi square test was explored to study the correlation between FARSB expression and clinical features in breast cancer. Kaplan-Meier analysis and Cox regression were utilized to discuss the prognosis of breast cancer. Spearman analysis was applied to analyze the association between FARSB expression and immunity. We studied the correlation of FARSB with common breast cancer chemotherapeutic drugs. We conducted GO, KEGG, and GSEA enrichment analysis to study the molecular function of FARSB in breast cancer.

Results: The TCGA database suggested that FARSB was increased in several cancers, including breast cancer. HPA and UALCAN databases suggested that FARSB protein expression was higher in breast cancer than normal tissues. IHC analysis also confirmed the higher expression of FARSB in breast cancer. FARSB expression had correlation with ER status and PR status. In TCGA database, FARSB expression was related to ER status, PR status, and PAM50. Overexpression FARSB had adverse prognosis, and Cox regression considered FARSB as a prognostic marker. Immunological analysis demonstrated that FARSB was linked with immune cell infiltration and immune checkpoints. High FARSB expression had low TIDE score. In addition, FARSB was linked to drugs, such as 5-fluorouracil, doxorubicin, gemcitabine, and paclitaxel. GSEA analysis suggested that FARSB was involved in the pathways, including cell cycle, aminoacyl TRNA biosynthesis, DNA replication, spliceosome, and mismatch repair.

Conclusion: FARSB was highly expression at mRNA and protein level in breast cancer. Overexpression of FARSB had a poor prognosis in breast cancer. FARSB expression was associated with immunity and acted as a new target for cancer immunological therapy.

背景:FARSB是苯丙氨酸tRNA合成酶的β调控亚基。据报道,FARSB参与了癌症的发展。然而,FARSB在乳腺癌中的分子功能尚不清楚。本研究旨在探讨乳腺癌中FARSB表达的预后意义及其与免疫的关系。方法:应用TCGA、HPA、UALCAN等数据库,研究乳腺癌组织中FARSB mRNA和蛋白的表达及其与侵袭性的关系。我们采用免疫组化染色法(IHC)研究了FARSB在乳腺癌和正常组织中的表达。采用卡方检验研究FARSB表达与乳腺癌临床特征的相关性。采用Kaplan-Meier分析和Cox回归分析探讨乳腺癌的预后。采用Spearman分析法分析FARSB表达与免疫的关系。我们研究了FARSB与常用乳腺癌化疗药物的相关性。我们通过GO、KEGG和GSEA富集分析来研究FARSB在乳腺癌中的分子功能。结果:TCGA数据库显示,FARSB在包括乳腺癌在内的几种癌症中升高。HPA和UALCAN数据库显示,FARSB蛋白在乳腺癌中的表达高于正常组织。免疫组化分析也证实了FARSB在乳腺癌中的高表达。FARSB表达与ER状态、PR状态相关。在TCGA数据库中,FARSB表达与ER状态、PR状态、PAM50相关。过表达FARSB预后不良,Cox回归分析认为FARSB可作为预后指标。免疫学分析表明,FARSB与免疫细胞浸润和免疫检查点有关。高FARSB表达,低TIDE评分。此外,FARSB与5-氟尿嘧啶、阿霉素、吉西他滨和紫杉醇等药物有关。GSEA分析表明,FARSB参与了细胞周期、氨基酰基TRNA生物合成、DNA复制、剪接体和错配修复等途径。结论:FARSB在乳腺癌组织中mRNA和蛋白水平均有高表达。FARSB在乳腺癌中过表达预后较差。FARSB的表达与免疫相关,是肿瘤免疫治疗的新靶点。
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引用次数: 0
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Cancer Investigation
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