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Restraint of cancer cell plasticity by spatial homotypic clustering 空间同型聚类对癌细胞可塑性的抑制
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-09-18 DOI: 10.1016/j.ccell.2025.08.009
Simona Migliozzi, Bruno Adabbo, Luciano Garofano, Fan Wu, Pedro Davila, Ricardo J. Komotar, Michael E. Ivan, Ashish H. Shah, Benjamin B. Currall, Sion Williams, Daniel Bilbao Cortes, Melinda Minucci Boone, Macarena I. de la Fuente, Sakir H. Gultekin, Michele Ceccarelli, Antonio Iavarone, Anna Lasorella
Tumor heterogeneity fueled by plasticity of cancer cells is a key to therapy failure. Here, we define the role of proximal communications of malignant cells in glioblastoma plasticity. We find that tumor cell state coherence is maximal in cells organized in homotypic clusters with defined relationships with non-malignant cells, whereas randomly dispersed cells downregulate the original state, acquire alternative phenotypes and exhibit changes in the microenvironment. We demonstrate the intrinsic propensity of glioblastoma cells to develop into clustered and dispersed spatial patterns in orthotopic mouse models and experimentally validate the cell state-specific mechanisms of cell-cell adhesion that prevent phenotype deviation with pharmacologic perturbations in patients-derived glioblastoma models. We establish the generality of “homotypic clustered cell identity” in circulating clustered and single breast cancer cells and show that the glioblastoma glycolytic-plurimetabolic dispersed cellular state uniquely confers shorter survival, thus assigning clinical significance to the spatial patterning of cancer cells in human tumors.
肿瘤细胞可塑性引发的肿瘤异质性是治疗失败的关键。在这里,我们定义了恶性细胞近端通讯在胶质母细胞瘤可塑性中的作用。我们发现肿瘤细胞状态一致性在与非恶性细胞有明确关系的同型细胞群中是最大的,而随机分散的细胞下调原始状态,获得不同的表型,并在微环境中表现出变化。我们在原位小鼠模型中证明了胶质母细胞瘤细胞发展成集群和分散空间模式的内在倾向,并通过实验验证了细胞状态特异性的细胞粘附机制,该机制可以防止患者源性胶质母细胞瘤模型中药物干扰引起的表型偏差。我们在循环的群集和单个乳腺癌细胞中建立了“同型群集细胞身份”的普遍性,并表明胶质母细胞瘤糖酵解-多代谢分散细胞状态独特地赋予较短的生存期,从而为人类肿瘤中癌细胞的空间模式赋予临床意义。
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引用次数: 0
The coming era of nudge drugs for cancer 即将到来的助推抗癌药物时代
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-09-11 DOI: 10.1016/j.ccell.2025.08.004
Tristan Courau, Arpita Desai, Allon Wagner, Alexis J. Combes, Matthew F. Krummel
We propose an emerging strategy for advanced cancer treatment based on progressive, stepwise remodeling of tumor microenvironments (TMEs). TMEs are variable but show conserved archetypes across patients and tissue origins. Deep learning over single-cell atlases collected from perturbed tumors can uncover gene and cellular networks shifting between archetypes. This allows for designing “nudge” or “state-shifting” drugs whose sequential application achieves stepwise transformation of a TME from an adverse to a more favorable state, dismantling deleterious tumor-host interactions to achieve patient remission.
我们提出了一种基于肿瘤微环境(TMEs)的渐进、逐步重塑的晚期癌症治疗新策略。TMEs是可变的,但在患者和组织起源中显示保守的原型。对从受干扰的肿瘤中收集的单细胞图谱进行深度学习,可以揭示基因和细胞网络在原型之间的转移。这允许设计“轻推”或“状态转移”药物,其顺序应用实现TME从不利状态逐步转变为更有利的状态,消除有害的肿瘤-宿主相互作用,以实现患者缓解。
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引用次数: 0
Protein-based classification reveals an immune-hot subtype in IDH mutant astrocytoma with worse prognosis 基于蛋白质的分类揭示了IDH突变型星形细胞瘤的免疫热亚型,预后较差
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-09-11 DOI: 10.1016/j.ccell.2025.08.006
Jihong Tang, Wenhua Fan, Yuyan Ruan, Xing Liu, Fufang Qiu, Jie Feng, Guoshi Huang, Mengli Yan, Hui Wang, Quanhua Mu, Ran Liu, Yingxi Yang, Zhi Huang, Yimeng Qiao, Xuejie Wang, Yumeng Guo, Mingchen Yu, Ying Zhang, Ruichao Chai, Fan Wu, Jiguang Wang
Intertumoral heterogeneity complicates treatment of IDH-mutant astrocytoma. We analyze spatiotemporal multi-omics data and discover four clusters: adipogenesis/fatty-acid-metabolism (AFM), proliferative/progenitor (PPR), immune/mesenchymal-enriched (IME), and neuronal (NEU). PPR and IME are associated with poorer prognosis, a result validated in The Cancer Genome Atlas (TCGA) and a Chinese cohort of 273 IDH-mutant astrocytomas. Longitudinal analysis of 189 initial-recurrent pairs shows an evolutionary shift toward PPR/IME subtypes. Mechanistically, PPR is enriched for CDKN2A/B deletions, whereas IME features increased gemistocytic differentiation (GD) and infiltration by exhausted T cells and plasma cells. Spatial multi-omics link GD morphology to mesenchymal-like (MES-like) tumor cell aggregates and lymphocyte-rich niches. MES-like tumor cells in IME overexpress interferon-stimulated genes such as GBP1, which we show promotes proliferation and migration. Finally, we develop an AI-powered classifier for patient stratification. Our work delineates protein-based clustering of IDH-mutant astrocytoma and reveals an immune-hot subgroup that may inform therapeutic development.
肿瘤间异质性使idh突变星形细胞瘤的治疗复杂化。我们分析了时空多组学数据,发现了四个集群:脂肪生成/脂肪酸代谢(AFM)、增殖/祖细胞(PPR)、免疫/间充质富集(IME)和神经元(NEU)。PPR和IME与较差的预后相关,这一结果在癌症基因组图谱(TCGA)和273例idh突变星形细胞瘤的中国队列中得到了验证。对189对初始复发基因对的纵向分析显示了向PPR/IME亚型的进化转变。从机制上讲,PPR富集CDKN2A/B缺失,而IME则增加了生殖细胞分化(GD)和耗竭的T细胞和浆细胞的浸润。空间多组学将GD形态与间充质样(mes样)肿瘤细胞聚集和富含淋巴细胞的生态位联系起来。IME中的mes样肿瘤细胞过表达干扰素刺激基因,如GBP1,我们发现它促进了增殖和迁移。最后,我们开发了一个用于患者分层的人工智能分类器。我们的工作描述了idh突变星形细胞瘤的基于蛋白质的聚类,并揭示了一个免疫热亚群,可能为治疗发展提供信息。
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引用次数: 0
Multi-omic profiling of intraductal papillary neoplasms of the pancreas reveals distinct patterns and potential markers of progression 胰腺导管内乳头状肿瘤的多组学分析揭示了不同的模式和潜在的进展标记
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-08-28 DOI: 10.1016/j.ccell.2025.08.001
Yuefan Wang, Tung-Shing M. Lih, Jae W. Lee, Takao Ohtsuka, Yuto Hozaka, Mari Mino-Kenudson, Nazmi Volkan Adsay, Claudio Luchini, Aldo Scarpa, Ajay V. Maker, Grace E. Kim, Jorge Paulino, Lijun Chen, Jongmin Woo, Liyuan Jiao, Zhenyu Sun, Davina Goodman, Michael J. Pflüger, Nicholas J. Roberts, Hanno Matthaei, Ralph H. Hruban
To enable early detection of pancreatic cancer from precancerous lesions, we analyze proteins and glycoproteins from 64 intraductal papillary mucinous neoplasms (IPMNs), 55 cyst fluid samples, 104 pancreatic ductal adenocarcinomas (PDACs), and various types of normal samples using mass spectrometry. High-grade IPMNs show enrichment of glycosylation level and tumor progression pathways compared to low-grade lesions. High-grade IPMN associated proteins, such as PLOD3, IRS2, LGALS9, and Trop-2, are identified and validated using immunolabeling and laser microdissection. Some high-grade associated proteins are also detected in pancreatic cyst fluids, which allows us to link proteins and glycoproteins expressed in neoplastic cells to clinically accessible biospecimens. Altered glycosylation level of extracellular matrix (ECM) proteins is observed in IPMNs compared to normal ducts. Additionally, we identify a subset of IPMNs with PDAC-like features, including elevated expression of ECM proteins. These findings offer insight into progression-associated proteins and emphasize the diagnostic and therapeutic potential of these proteins in pancreatic tumors.
为了能够从癌前病变中早期发现胰腺癌,我们使用质谱分析了64例导管内乳头状粘液瘤(IPMNs)、55例囊肿液样本、104例胰腺导管腺癌(PDACs)和各种类型的正常样本的蛋白质和糖蛋白。与低级别病变相比,高级别IPMNs表现出糖基化水平和肿瘤进展途径的富集。高级别IPMN相关蛋白,如PLOD3、IRS2、LGALS9和Trop-2,通过免疫标记和激光显微解剖鉴定和验证。在胰腺囊肿液中也检测到一些高级别相关蛋白,这使我们能够将肿瘤细胞中表达的蛋白和糖蛋白与临床可获得的生物标本联系起来。与正常导管相比,IPMNs细胞外基质(ECM)蛋白的糖基化水平发生了改变。此外,我们发现ipmn的一个子集具有pdac样特征,包括ECM蛋白的表达升高。这些发现提供了对进展相关蛋白的深入了解,并强调了这些蛋白在胰腺肿瘤中的诊断和治疗潜力。
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引用次数: 0
Glioblastoma hijacks cholinergic networks 胶质母细胞瘤劫持胆碱能网络
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-08-28 DOI: 10.1016/j.ccell.2025.08.003
Yen Vu, Moran Amit
Glioblastoma alters normal brain function by hijacking neural circuits. In this issue of Cancer Cell, Yang et al. elucidate the mechanisms by which glioblastoma exploits cholinergic signaling pathways to disrupt the hierarchical organization of brain networks. These insights help redefine tumor-brain interactions and open new therapeutic avenues.
胶质母细胞瘤通过劫持神经回路来改变正常的大脑功能。在这一期的《癌症细胞》中,Yang等人阐明了胶质母细胞瘤利用胆碱能信号通路破坏脑网络分层组织的机制。这些见解有助于重新定义肿瘤与大脑的相互作用,并开辟新的治疗途径。
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引用次数: 0
Phase 1/2 trial of encorafenib, cetuximab, and nivolumab in microsatellite stable BRAFV600E metastatic colorectal cancer 恩科非尼、西妥昔单抗和纳武单抗治疗微卫星稳定BRAFV600E转移性结直肠癌的1/2期试验
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-08-28 DOI: 10.1016/j.ccell.2025.08.002
Van K. Morris, Christine M. Parseghian, Vahid Bahrambeigi, Nourhan Abdelfattah, Lianchun Xiao, Anjali Agrawal, Kangyu Lin, Kanwal P.S. Raghav, Robert A. Wolff, Arvind Dasari, Ryan W. Huey, Bryan K. Kee, Michael J. Overman, Jason A. Willis, Phat H. Le, Michelle Escano, Yunyu C. Baig, Kelsey Pan, David Menter, Alda L. Tam, Scott Kopetz
The BRAF inhibitor encorafenib and anti-epidermal growth factor receptor (EGFR) antibody cetuximab modestly improve survival for patients with microsatellite stable (MSS) BRAFV600E metastatic colorectal cancer (mCRC), characterized by higher immune activation than MSS BRAFwild-type colorectal cancer (CRC). In this phase 1/2 study (NCT04017650) of 26 participants with MSS BRAFV600E mCRC who received encorafenib, cetuximab, and anti-PD-1 antibody nivolumab, we report an overall response rate of 50% (95% confidence interval [CI] 29–71) and median progression-free survival of 7.4 months (95% CI, 5.6–9.6). Transcriptomic profiling of pretreatment biopsies and extracellular vesicle RNA (evRNA) isolated from plasma show enrichment of non-canonical mitogen-activated protein kinase (MAPK) signaling and immune activation signatures for responders. Complement pathway activation enriches in non-responder biopsies. On serial evRNA profiling, decreased MAPK signature and increased interferon gamma response signature associate with sustained treatment benefit. MSS BRAFV600E mCRC with baseline MAPK activation and immune activation signatures may benefit from the triple combination but not with complement pathway activation.
BRAF抑制剂encorafenib和抗表皮生长因子受体(EGFR)抗体西妥昔单抗可适度提高微卫星稳定型(MSS) BRAFV600E转移性结直肠癌(mCRC)患者的生存率,其特征是比MSS braf野生型结直肠癌(CRC)具有更高的免疫激活。在这项1/2期研究(NCT04017650)中,26名MSS BRAFV600E mCRC患者接受了恩科非尼、西妥昔单抗和抗pd -1抗体纳武单抗,我们报告总缓解率为50%(95%置信区间[CI] 29-71),中位无进展生存期为7.4个月(95% CI, 5.6-9.6)。预处理活检和从血浆中分离的细胞外囊泡RNA (evRNA)的转录组学分析显示,应答者的非典型有丝分裂原活化蛋白激酶(MAPK)信号和免疫激活信号富集。补体通路激活在无应答活检中丰富。在连续的evRNA分析中,MAPK信号的减少和干扰素γ反应信号的增加与持续的治疗益处相关。具有基线MAPK激活和免疫激活特征的MSS BRAFV600E mCRC可能受益于三联疗法,但不受益于补体途径激活。
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引用次数: 0
Safety and efficacy of a STAT3-targeted cyclic oligonucleotide: From murine models to a phase 1 clinical trial in pet cats with oral cancer stat3靶向环寡核苷酸的安全性和有效性:从小鼠模型到口腔癌宠物猫的1期临床试验
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-08-28 DOI: 10.1016/j.ccell.2025.07.015
Jennifer R. Grandis, Katherine A. Skorupski, Ning Cheng, Zhibin Cui, Hua Li, Liam C. Woerner, Jovanka Gencel-Augusto, Yan Zeng, Jamie V. Shiah, Neil E. Bhola, Malabika Sen, Kelly Blum, Mi-Ok Kim, Daniel York, Robert B. Rebhun, Hong Chang, Natalia F. Murad, Adam B. Olshen, Ellen E. Sparger, Daniel E. Johnson
STAT3 is an oncogenic transcription factor that activates cancer cell signaling and induces an immunosuppressive immune environment, making it an attractive therapeutic target. Transcription factors are exceptionally challenging targets and there are no Food and Drug Administration-approved STAT3 inhibitors. We previously reported positive pharmacodynamics of a linear STAT3 decoy oligonucleotide administered intratumorally in a phase 0 trial in patients with head and neck cancer squamous cell carcinoma (HNSCC). Here, we describe the anti-tumor and immune effects of a systemically administered cyclic STAT3 decoy (CS3D) in immunocompetent HNSCC murine models and the safety and efficacy of CS3D in a clinical trial in pet cats with HNSCC. Responders in the clinical trial (35% disease control rate) showed significant differences in selected peripheral blood immune parameters as well as elevated PD-1 expression in the tumors compared with non-responders. These findings support a clinical trial of CS3D in HNSCC patients.
STAT3是一种致癌转录因子,可激活癌细胞信号传导并诱导免疫抑制环境,使其成为一个有吸引力的治疗靶点。转录因子是极具挑战性的靶标,目前还没有食品和药物管理局批准的STAT3抑制剂。我们之前报道了在头颈癌鳞状细胞癌(HNSCC)患者的0期试验中瘤内给予线性STAT3诱饵寡核苷酸的阳性药效学。在这里,我们描述了一种循环STAT3诱骗剂(CS3D)在免疫功能强的HNSCC小鼠模型中的抗肿瘤和免疫作用,以及CS3D在患有HNSCC的宠物猫的临床试验中的安全性和有效性。临床试验中的应答者(疾病控制率35%)与无应答者相比,在选定的外周血免疫参数以及肿瘤中PD-1表达升高方面存在显著差异。这些发现支持CS3D在HNSCC患者中的临床试验。
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引用次数: 0
From gene lists to context drift 从基因列表到环境漂移
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-08-21 DOI: 10.1016/j.ccell.2025.07.025
Zhongyang Lin, Dvir Aran
Treatment resistance limits long-term effectiveness in cancer therapy. Conventional biomarkers typically rely on static gene expression levels. In this issue of Cancer Cell, Jassim et al. report a new approach, RECODR, which captures how gene relationships shift over time, uncovering hidden drivers of resistance and suggesting effective combination treatments.
治疗耐药性限制了癌症治疗的长期有效性。传统的生物标志物通常依赖于静态基因表达水平。在这一期的《癌细胞》杂志上,Jassim等人报道了一种新的方法RECODR,它捕捉到了基因关系如何随着时间的推移而变化,揭示了隐藏的耐药性驱动因素,并提出了有效的联合治疗方法。
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引用次数: 0
Unraveling lymphoma-induced immune senescence 解开淋巴瘤引起的免疫衰老
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-08-21 DOI: 10.1016/j.ccell.2025.07.009
Patrizia Mondello, Stephen M. Ansell
B cell lymphomas arise from mutations that disrupt normal germinal center B cell programs and promote a microenvironment that fosters aberrant proliferation and immune escape. In this issue of Cancer Cell, Hesterberg et al. show that lymphoma accelerates T cell aging by transcriptional and epigenetic reprogramming that mirrors physiological aging.
B细胞淋巴瘤是由突变引起的,这些突变破坏了正常的生发中心B细胞程序,促进了一个微环境,促进了异常增殖和免疫逃逸。在这一期的《癌细胞》杂志上,Hesterberg等人发现淋巴瘤通过转录和表观遗传重编程加速T细胞衰老,这反映了生理衰老。
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引用次数: 0
Genome-wide CRISPR screens identify critical targets to enhance CAR-NK cell antitumor potency 全基因组CRISPR筛选鉴定增强CAR-NK细胞抗肿瘤效力的关键靶点
IF 50.3 1区 医学 Q1 CELL BIOLOGY Pub Date : 2025-08-21 DOI: 10.1016/j.ccell.2025.07.021
Alexander Biederstädt, Rafet Basar, Jeong-Min Park, Nadima Uprety, Rejeena Shrestha, Francia Reyes Silva, Merve Dede, John Watts, Sunil Acharya, Donghai Xiong, Bin Liu, May Daher, Hind Rafei, Pinaki Banerjee, Ping Li, Sanjida Islam, Huihui Fan, Mayra Shanley, Jingling Jin, Bijender Kumar, Vernikka Woods, Paul Lin, Silvia Tiberti, Ana Karen Nunez Cortes, Xin Ru Jiang, Inci Biederstädt, Patrick Zhang, Ye Li, Seema Rawal, Enli Liu, Luis Muniz-Feliciano, Gary M. Deyter, Elizabeth J. Shpall, Natalie Wall Fowlkes, Ken Chen, Katayoun Rezvani
Adoptive cell therapy using engineered natural killer (NK) cells is a promising approach for cancer treatment, with targeted gene editing offering the potential to further enhance their therapeutic efficacy. However, the spectrum of actionable genetic targets to overcome tumor and microenvironment-mediated immunosuppression remains largely unexplored. We performed multiple genome-wide CRISPR screens in primary human NK cells and identified critical checkpoints regulating resistance to immunosuppressive pressures. Ablation of MED12, ARIH2, and CCNC significantly improved NK cell antitumor activity against multiple treatment-refractory human cancers in vitro and in vivo. CRISPR editing augmented both innate and CAR-mediated NK cell function, associated with enhanced metabolic fitness, increased secretion of proinflammatory cytokines, and expansion of cytotoxic NK cell subsets. Through high-content genome-wide CRISPR screening in NK cells, this study reveals critical regulators of NK cell function and provides a valuable resource for engineering next-generation NK cell therapies with improved efficacy against cancer.
使用工程化自然杀伤(NK)细胞的过继细胞治疗是一种很有前途的癌症治疗方法,有针对性的基因编辑提供了进一步提高其治疗效果的潜力。然而,克服肿瘤和微环境介导的免疫抑制的可操作的遗传靶点的谱仍然很大程度上未被探索。我们在原代人NK细胞中进行了多个全基因组CRISPR筛选,并确定了调节免疫抑制压力抗性的关键检查点。在体外和体内实验中,消融MED12、ARIH2和CCNC可显著提高NK细胞对多种难治性人类癌症的抗肿瘤活性。CRISPR编辑增强了先天和car介导的NK细胞功能,与增强的代谢适应性、促炎细胞因子的分泌增加和细胞毒性NK细胞亚群的扩增有关。通过在NK细胞中进行高含量的全基因组CRISPR筛选,本研究揭示了NK细胞功能的关键调控因子,为设计下一代NK细胞治疗方法提供了宝贵的资源,提高了NK细胞的抗癌效果。
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引用次数: 0
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Cancer Cell
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