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TAp73 regulates mitochondrial dynamics and multiciliated cell homeostasis through an OPA1 axis. TAp73通过OPA1轴调节线粒体动力学和多纤毛细胞的稳态。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-08 DOI: 10.1038/s41419-024-07130-6
Niall A Buckley, Andrew Craxton, Xiao-Ming Sun, Emanuele Panatta, Lucia Giraldez Pinon, Sina Beier, Lajos Kalmar, Jaime Llodrá, Nobuhiro Morone, Ivano Amelio, Gerry Melino, L Miguel Martins, Marion MacFarlane

Dysregulated mitochondrial fusion and fission has been implicated in the pathogenesis of numerous diseases. We have identified a novel function of the p53 family protein TAp73 in regulating mitochondrial dynamics. TAp73 regulates the expression of Optic Atrophy 1 (OPA1), a protein responsible for controlling mitochondrial fusion, cristae biogenesis and electron transport chain function. Disruption of this axis results in a fragmented mitochondrial network and an impaired capacity for energy production via oxidative phosphorylation. Owing to the role of OPA1 in modulating cytochrome c release, TAp73-/- cells display an increased sensitivity to apoptotic cell death, e.g., via BH3-mimetics. We additionally show that the TAp73/OPA1 axis has functional relevance in the upper airway, where TAp73 expression is essential for multiciliated cell differentiation and function. Consistently, ciliated epithelial cells of Trp73-/- (global p73 knock-out) mice display decreased expression of OPA1 and perturbations of the mitochondrial network, which may drive multiciliated cell loss. In support of this, Trp73 and OPA1 gene expression is decreased in chronic obstructive pulmonary disease (COPD) patients, a disease characterised by alterations in mitochondrial dynamics. We therefore highlight a potential mechanism involving the loss of p73 in COPD pathogenesis. Our findings also add to the growing body of evidence for growth-promoting roles of TAp73 isoforms.

线粒体融合与分裂失调与多种疾病的发病机制有关。我们发现了 p53 家族蛋白 TAp73 在调节线粒体动力学方面的一种新功能。TAp73调节视神经萎缩1(OPA1)的表达,OPA1是一种负责控制线粒体融合、嵴生物生成和电子传递链功能的蛋白质。这一轴线的中断会导致线粒体网络破碎,通过氧化磷酸化产生能量的能力受损。由于 OPA1 在调节细胞色素 c 释放方面的作用,TAp73-/-细胞对细胞凋亡(如通过 BH3-模拟物)的敏感性增加。我们还发现,TAp73/OPA1 轴在上气道中具有功能相关性,TAp73 的表达对多纤毛细胞的分化和功能至关重要。同样,Trp73-/-(全局 p73 基因敲除)小鼠的纤毛上皮细胞显示出 OPA1 表达减少和线粒体网络紊乱,这可能会导致多纤毛细胞丧失。慢性阻塞性肺病(COPD)是一种以线粒体动力学改变为特征的疾病,而慢性阻塞性肺病患者体内的 Trp73 和 OPA1 基因表达量减少也证明了这一点。因此,我们强调了慢性阻塞性肺病发病机制中涉及 p73 缺失的潜在机制。我们的发现也为越来越多的证据表明 TAp73 同工酶具有促进生长的作用增添了新的证据。
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引用次数: 0
KHDRBS1 regulates the pentose phosphate pathway and malignancy of GBM through SNORD51-mediated polyadenylation of ZBED6 pre-mRNA. KHDRBS1通过SNORD51介导的ZBED6前mRNA的多腺苷酸化调控磷酸戊糖通路和GBM的恶性程度。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-08 DOI: 10.1038/s41419-024-07163-x
Xiaoyu Liu, Xiaobai Liu, Weiwei Dong, Ping Wang, Libo Liu, Lu Liu, Tiange E, Di Wang, Yang Lin, Hongda Lin, Xuelei Ruan, Yixue Xue

Glioblastoma is one of the most common and aggressive primary brain tumors. The aberration of metabolism is the important character of GBM cells and is tightly related to the malignancy of GBM. We mainly verified the regulatory effects of KHDRBS1, SNORD51 and ZBED6 on pentose phosphate pathway and malignant biological behavior in glioblastoma cells, such as proliferation, migration and invasion. KHDRBS1 and SNORD51 were upregulated in GBM tissues and cells. But ZBED6 had opposite tendency in GBM tissues and cells. KHDRBS1 may improve the stability of SNORD51 by binding to SNORD51, thus elevating the expression of SNORD51. More importantly, SNORD51 can competitively bind to WDR33 with 3'UTR of ZBED6 pre-mRNA which can inhibit the 3' end processing of ZBED6 pre-mRNA, thereby inhibiting the expression of ZBED6 mRNA. ZBED6 inhibited the transcription of G6PD by binding to the promoter region of G6PD. Therefore, the KHDRBS1/SNORD51/ZBED6 pathway performs an important part in regulating the pentose phosphate pathway to influence malignant biological behavior of GBM cells, providing new insights and potential targets for the treatment of GBM.

胶质母细胞瘤是最常见的侵袭性原发性脑肿瘤之一。代谢畸变是GBM细胞的重要特征,与GBM的恶性程度密切相关。我们主要验证了 KHDRBS1、SNORD51 和 ZBED6 对磷酸戊糖通路以及胶质母细胞瘤细胞增殖、迁移和侵袭等恶性生物学行为的调控作用。KHDRBS1和SNORD51在GBM组织和细胞中上调。而 ZBED6 在 GBM 组织和细胞中的表达则与之相反。KHDRBS1可能通过与SNORD51结合来提高SNORD51的稳定性,从而提高SNORD51的表达。更重要的是,SNORD51可与ZBED6前mRNA 3'UTR的WDR33竞争性结合,从而抑制ZBED6前mRNA的3'端加工,进而抑制ZBED6 mRNA的表达。ZBED6 通过与 G6PD 启动子区域结合来抑制 G6PD 的转录。因此,KHDRBS1/SNORD51/ZBED6通路在调控磷酸戊糖通路影响GBM细胞恶性生物学行为方面发挥了重要作用,为GBM的治疗提供了新的见解和潜在靶点。
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引用次数: 0
TMEM232 is required for the formation of sperm flagellum and male fertility in mice. 小鼠精子鞭毛的形成和雄性生育能力需要 TMEM232。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-08 DOI: 10.1038/s41419-024-07200-9
Xinying Cai, Hui Zhang, Shuai Kong, Weilong Xu, Jie Zheng, Ning Wang, Shuai He, Shupei Li, Yiru Shen, Ke Wang, Zengyunou Zhang, Haijian Cai, Fang Ma, Shun Bai, Fuxi Zhu, Fengli Xiao, Fengsong Wang

Asthenoteratozoospermia is a major cause of male infertility. Thus far, the identified related genes can explain only a small share of asthenoteratozoospermia cases, suggesting the involvement of other genes. The transmembrane protein TMEM232 is highly expressed in mouse testes. In the present study, to determine its function of TMEM232 in testes, we constructed a Tmem232-null mouse model using CRISPR-Cas9 technology. Tmem232 knockout (KO) male mice was completely infertile, and their sperm were immotile, with morphological defects of the flagellum. Electron microscopy revealed an aberrant midpiece-principal junction and the loss of the fourth outer microtubule doublet in the sperm of Tmem232-/- mice. Sperm cells presented an 8 + 2 conformation and an irregular arrangement of the mitochondrial sheath. Proteomic analysis revealed altered expression of proteins related to flagellar motility, sperm capacitation, the integrity and stability of sperm structure, especially an upregulated expression of multiple ribosome components in TMEM232-deficient spermatids. Additionally, TMEM232 was observed to be involved in autophagy by interacting with autophagy-related proteins, such as ATG14, to regulate ribosome homeostasis during spermiogenesis. These results suggest that TMEM232, as a potential scaffold protein involving in the correct assembly, distribution, and stability maintenance of certain functional complexes by recruiting key intracellular proteins, is essential for the formation of a highly structured flagellum and plays an important role in the autophagic elimination of cytosolic ribosomes to provide energy for sperm motility.

无精子症是导致男性不育的一个主要原因。迄今为止,已发现的相关基因只能解释一小部分无精子症病例,这表明还有其他基因参与其中。跨膜蛋白 TMEM232 在小鼠睾丸中高度表达。在本研究中,为了确定TMEM232在睾丸中的功能,我们利用CRISPR-Cas9技术构建了Tmem232基因缺失小鼠模型。Tmem232基因敲除(KO)雄性小鼠完全不育,其精子无活力,鞭毛形态缺陷。电子显微镜显示,Tmem232-/-小鼠精子的中段-主连接异常,第四外微管双层缺失。精子细胞呈 8 + 2 构象,线粒体鞘排列不规则。蛋白质组分析表明,与鞭毛运动、精子获能、精子结构的完整性和稳定性有关的蛋白质的表达发生了改变,特别是在TMEM232缺陷的精子中,多种核糖体成分的表达上调。此外,还观察到 TMEM232 与 ATG14 等自噬相关蛋白相互作用,参与了精子发生过程中的自噬,从而调节核糖体的平衡。这些结果表明,TMEM232 作为一种潜在的支架蛋白,通过招募细胞内的关键蛋白参与某些功能复合物的正确组装、分布和稳定性维持,对形成高度结构化的鞭毛至关重要,并在自噬消除细胞质核糖体为精子运动提供能量方面发挥重要作用。
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引用次数: 0
Integration of epigenomic and transcriptomic profiling uncovers EZH2 target genes linked to cysteine metabolism in hepatocellular carcinoma. 整合表观基因组学和转录组学分析,发现肝细胞癌中与半胱氨酸代谢有关的 EZH2 靶基因。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-08 DOI: 10.1038/s41419-024-07198-0
Jaehyun Lee, Chaelin You, Geunho Kwon, Junho Noh, Kyubin Lee, Kyunghwan Kim, Keunsoo Kang, Kyuho Kang

Enhancer of zeste homolog 2 (EZH2), a key protein implicated in various cancers including hepatocellular carcinoma (HCC), is recognized for its association with epigenetic dysregulation and pathogenesis. Despite clinical explorations into EZH2-targeting therapies, the mechanisms underlying its role in gene suppression in HCC have remained largely unexplored. Here, we integrate epigenomic and transcriptomic analyses to uncover the transcriptional landscape modulated by selective EZH2 inhibition in HCC. By reanalyzing transcriptomic data of HCC patients, we demonstrate that EZH2 overexpression correlates with poor patient survival. Treatment with the EZH2 inhibitor tazemetostat restored expression of genes involved in cysteine-methionine metabolism and lipid homeostasis, while suppressing angiogenesis and oxidative stress-related genes. Mechanistically, we demonstrate EZH2-mediated H3K27me3 enrichment at cis-regulatory elements of transsulfuration pathway genes, which is reversed upon inhibition, leading to increased chromatin accessibility. Among 16 EZH2-targeted candidate genes, BHMT and CDO1 were notably correlated with poor HCC prognosis. Tazemetostat treatment of HCC cells increased BHMT and CDO1 expression while reducing levels of ferroptosis markers FSP1, NFS1, and SLC7A11. Functionally, EZH2 inhibition dose-dependently reduced cell viability and increased lipid peroxidation in HCC cells. Our findings reveal a novel epigenetic mechanism controlling lipid peroxidation and ferroptosis susceptibility in HCC, providing a rationale for exploring EZH2-targeted therapies in this malignancy.

泽斯特同源物增强子 2(EZH2)是一种与包括肝细胞癌(HCC)在内的多种癌症有关的关键蛋白,它与表观遗传失调和发病机制有关。尽管临床上对 EZH2 靶向疗法进行了探索,但其在 HCC 中发挥基因抑制作用的机制在很大程度上仍未探明。在这里,我们整合了表观基因组学和转录组学分析,揭示了选择性抑制 EZH2 在 HCC 中的转录格局。通过重新分析 HCC 患者的转录组数据,我们证明 EZH2 的过表达与患者的不良生存率相关。使用 EZH2 抑制剂 tazemetostat 治疗可恢复参与半胱氨酸-蛋氨酸代谢和脂质稳态的基因表达,同时抑制血管生成和氧化应激相关基因。从机理上讲,我们证明了 EZH2 介导的 H3K27me3 在转硫化途径基因顺式调控元件处的富集,这种富集在抑制作用下被逆转,从而导致染色质可及性的增加。在16个EZH2靶向候选基因中,BHMT和CDO1与HCC预后不良明显相关。他昔莫司他治疗HCC细胞可增加BHMT和CDO1的表达,同时降低铁变态标志物FSP1、NFS1和SLC7A11的水平。在功能上,EZH2抑制剂剂量依赖性地降低了HCC细胞的存活率并增加了脂质过氧化。我们的研究结果揭示了控制 HCC 中脂质过氧化和铁变态反应易感性的新型表观遗传学机制,为探索针对这种恶性肿瘤的 EZH2 靶向疗法提供了理论依据。
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引用次数: 0
MIST1 regulates endoplasmic reticulum stress-induced hepatic apoptosis as a candidate marker of fatty liver disease progression. MIST1调控内质网应激诱导的肝细胞凋亡,是脂肪肝进展的候选标志。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-08 DOI: 10.1038/s41419-024-07217-0
Sumin Hur, Haengdueng Jeong, Keunyoung Kim, Kwang H Kim, Sung Hee Kim, Yura Lee, Ki Taek Nam

The liver regenerates after injury; however, prolonged injury can lead to chronic inflammation, fatty liver disease, fibrosis, and cancer. The mechanism involving the complex pathogenesis of the progression of liver injury to chronic liver disease remains unclear. In this study, we investigated the dynamics of gene expression associated with the progression of liver disease. We analyzed changes in gene expression over time in a mouse model of carbon tetrachloride (CCl4)-induced fibrosis using high-throughput RNA sequencing. Prolonged CCl4-induced liver injury increased the expression levels of genes associated with the unfolded protein response (UPR), which correlated with the duration of injury, with substantial, progressive upregulation of muscle, intestine, and stomach expression 1 (Mist1, bhlha15) in the mouse fibrosis model and other liver-damaged tissues. Knockdown of MIST1 in HepG2 cells decreased tribbles pseudokinase 3 (TRIB3) levels and increased apoptosis, consistent with the patterns detected in Mist1-knockout mice. MIST1 expression was confirmed in liver tissues from patients with metabolic dysfunction-associated steatohepatitis and alcoholic steatohepatitis (MASH) and correlated with disease progression. In conclusion, MIST1 is expressed in hepatocytes in response to damage, suggesting a new indicator of liver disease progression. Our results suggest that MIST1 plays a key role in the regulation of apoptosis and TRIB3 expression contributing to progressive liver disease after injury.

肝脏在损伤后会再生,但长期损伤会导致慢性炎症、脂肪肝、肝纤维化和癌症。肝损伤进展为慢性肝病的复杂发病机制尚不清楚。在这项研究中,我们调查了与肝病进展相关的基因表达动态。我们利用高通量 RNA 测序技术分析了四氯化碳(CCl4)诱导肝纤维化小鼠模型中基因表达随时间的变化。长期的四氯化碳诱导的肝损伤增加了与未折叠蛋白反应(UPR)相关基因的表达水平,这与损伤持续时间相关,在小鼠纤维化模型和其他肝损伤组织中,肌肉、肠道和胃表达1(Mist1,bhlha15)的表达水平大幅、渐进性上调。在 HepG2 细胞中敲除 MIST1 会降低 tribbles 假激酶 3 (TRIB3) 的水平并增加细胞凋亡,这与在 Mist1 基因敲除小鼠中检测到的模式一致。在代谢功能障碍相关性脂肪性肝炎和酒精性脂肪性肝炎(MASH)患者的肝组织中证实了 MIST1 的表达,并与疾病的进展相关。总之,MIST1 在肝细胞中的表达是对损伤的反应,这提示了肝病进展的一个新指标。我们的研究结果表明,MIST1 在损伤后肝细胞凋亡和 TRIB3 表达的调控中起着关键作用,有助于肝脏疾病的进展。
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引用次数: 0
PD-L2 of tumor-derived exosomes mediates the immune escape of cancer cells via the impaired T cell function. 肿瘤外泌体中的 PD-L2 通过受损的 T 细胞功能介导癌细胞的免疫逃逸。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-07 DOI: 10.1038/s41419-024-07191-7
Tongfeng Liu, Shuwen Cheng, Bo Peng, Haojing Zang, Xiaofeng Zhu, Xuetong Wang, Xujie Zhao, Yinmin Gu, Yongbo Pan, Hongbo Hu, Shan Gao

The function of PD-1/PD-L1 axis have been intensively studied for immune escape of various cancers. However, the underlying function of PD-L2 remains poorly understood. Here, we demonstrate that PD-L2 is majorly expressed in exosomes with surface localization by clear cell renal cell carcinoma (ccRCC) cells. Tumor cell-derived exosome PD-L2 (TDE-PD-L2) exhibits high expression compared with TDE-PD-L1 in various cancers. In the absence of adaptive immune, TDE-PD-L2 suppresses tumor growth and metastasis. Under immune competence condition, TDE-PD-L2 is hijacked by immune cells in a PD-1-dependent manner to systematically dampen function of T cells via the increased proportion of the regulatory T cells and the decreased proportion of cytotoxic CD8+ T cells in both tumor-infiltrating T cells and spleen. The effects of TDE-PD-L2 on tumor is restored by antibodies targeting PD-L2. Collectively, we demonstrate that PD-1/TDE-PD-L2 axis systematically suppresses T cell functions, representing a potentially therapeutic strategy for ccRCC treatment.

人们一直在深入研究 PD-1/PD-L1 轴在各种癌症的免疫逃逸中的功能。然而,人们对 PD-L2 的基本功能仍然知之甚少。在这里,我们证明了 PD-L2 主要在透明细胞肾细胞癌(ccRCC)细胞表面定位的外泌体中表达。与TDE-PD-L1相比,肿瘤细胞衍生的外泌体PD-L2(TDE-PD-L2)在多种癌症中表现出较高的表达量。在缺乏适应性免疫的情况下,TDE-PD-L2 可抑制肿瘤的生长和转移。在免疫能力条件下,TDE-PD-L2 被免疫细胞以 PD-1 依赖性方式劫持,通过增加肿瘤浸润 T 细胞和脾脏中调节性 T 细胞的比例和减少细胞毒性 CD8+ T 细胞的比例,系统性地抑制 T 细胞的功能。靶向 PD-L2 的抗体可恢复 TDE-PD-L2 对肿瘤的影响。总之,我们证明了PD-1/TDE-PD-L2轴可系统性地抑制T细胞功能,是治疗ccRCC的一种潜在策略。
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引用次数: 0
Oocyte death is triggered by the stabilization of TAp63α dimers in response to cisplatin. 顺铂作用下,TAp63α二聚体的稳定会引发卵母细胞死亡。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-07 DOI: 10.1038/s41419-024-07202-7
Amirhossein Abazarikia, Wonmi So, Shuo Xiao, So-Youn Kim

The TAp63α protein is highly expressed in primordial follicle oocytes, where it typically exists in an inactive dimeric form. Upon DNA damage, TAp63α undergoes hyperphosphorylation, transitioning from a dimeric to a tetrameric structure, which initiates oocyte apoptosis by upregulating pro-apoptotic gene. Our results demonstrate that cisplatin, an alkylating anti-cancer agent, predominantly produced the TAp63α dimer rather than the tetramer. We further observed that TAp63α protein accumulation occurred in primordial follicle oocytes following cisplatin treatment, and this accumulation was significantly reduced by cycloheximide, a protein synthesis inhibitor. These findings suggest that TAp63α accumulation is driven primarily by de novo protein synthesis in response to DNA damage. Notably, cycloheximide protected oocytes from cisplatin-induced apoptosis, as evidenced by reduced levels of both PUMA, a known pro-apoptotic target gene of TAp63α, and TAp63α itself. Additionally, TAp63α turnover appears to be regulated by ubiquitination and proteasome degradation, as evidenced by TAp63α accumulation without oocyte death when treated with PYR-41, a pharmacological inhibitor. However, when TAp63α was stabilized by PYR-41 and subsequently activated by cisplatin, oocyte death occurred, marked by increased γH2AX and Cleaved PARP. Moreover, the Casein kinase 1 inhibitor PF-670462 effectively blocked cisplatin-induced oocyte death, indicating that CK1-mediated phosphorylation is essential for TAp63α activation, even in the absence of tetramer formation. The ATR inhibitor BEZ235 prevented cisplatin-induced TAp63α accumulation, suggesting that TAp63α accumulation precedes its phosphorylation-driven activation. Collectively, our study reveals a novel mechanism of cisplatin-induced apoptosis in primordial follicle oocyte through TAp63α stabilization and accumulation, independent of tetramerization.

TAp63α 蛋白在原始卵泡卵母细胞中高度表达,通常以非活性二聚体形式存在。DNA 损伤后,TAp63α 蛋白会发生过度磷酸化,从二聚体结构转变为四聚体结构,从而通过上调促凋亡基因启动卵母细胞凋亡。我们的研究结果表明,顺铂(一种烷基化抗癌剂)主要产生 TAp63α 二聚体,而不是四聚体。我们进一步观察到,顺铂处理后,TAp63α蛋白在原始卵泡卵母细胞中积累,而蛋白合成抑制剂环己亚胺能显著减少这种积累。这些发现表明,TAp63α的积累主要是由DNA损伤时的新蛋白质合成驱动的。值得注意的是,环己亚胺能保护卵母细胞免受顺铂诱导的细胞凋亡的影响,这体现在PUMA(TAp63α的一个已知促凋亡靶基因)和TAp63α本身水平的降低。此外,TAp63α的转换似乎受泛素化和蛋白酶体降解的调控,这一点可以从TAp63α的积累得到证明,在使用PYR-41(一种药理抑制剂)处理时,卵母细胞不会死亡。然而,当 TAp63α 被PYR-41稳定并随后被顺铂激活时,卵母细胞就会死亡,表现为γH2AX 和裂解 PARP 的增加。此外,酪蛋白激酶 1 抑制剂 PF-670462 能有效阻止顺铂诱导的卵母细胞死亡,这表明即使没有形成四聚体,CK1 介导的磷酸化对 TAp63α 的激活也是必不可少的。ATR 抑制剂 BEZ235 阻止了顺铂诱导的 TAp63α 积累,表明 TAp63α 的积累先于其磷酸化驱动的活化。总之,我们的研究揭示了顺铂诱导原始卵泡卵母细胞凋亡的新机制,即通过TAp63α的稳定和积累,而非四聚体化。
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引用次数: 0
DKK1+ tumor cells inhibited the infiltration of CCL19+ fibroblasts and plasma cells contributing to worse immunotherapy response in hepatocellular carcinoma. DKK1+ 肿瘤细胞抑制了 CCL19+ 成纤维细胞和浆细胞的浸润,从而导致肝细胞癌的免疫治疗反应更差。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-07 DOI: 10.1038/s41419-024-07195-3
Guangyu Fan, Ruyun Gao, Tongji Xie, Lin Li, Le Tang, Xiaohong Han, Yuankai Shi

Intra-tumor immune infiltration plays a pivotal role in the interaction with tumor cells in hepatocellular carcinoma (HCC). However, its phenotype and related spatial structure remained elusive. To address these limitations, we conducted a comprehensive study combining spatial data (38,191 spots from eight samples) and single-cell data (56,022 cells from 20 samples). Our analysis revealed two distinct infiltration patterns: immune exclusion and immune activation. Plasma cells emerged as the primary cell type within intra-tumor immune clusters. Notably, we observed the co-location of CCL19+ fibroblasts with plasma cells, which secrete chemokines and promote T-cell activation and leukocyte migration. Conversely, in immune-exclusion samples, this co-location was primarily observed in the adjacent normal area. This co-localization correlated with T cell infiltration and the formation of tertiary lymphoid structures, validated by multiplex immunofluorescence conducted on twenty HCC samples. Both CCL19+ fibroblasts and plasma cells were associated with favorable survival outcomes. In an immunotherapy cohort, HCC patients who responded favorably exhibited higher infiltration of CCL19+ fibroblasts and plasma cells. Additionally, we observed the accumulation of DKK1+ tumor cells within the tumor area in immune-exclusion samples, particularly at the tumor boundary, which inhibited the infiltration of CCL19+ fibroblasts and plasma cells into the tumor area. Furthermore, in immune-exclusion samples, the SPP1 signaling pathway demonstrated the highest activity in communication between tumor and immune clusters, and CCL19-CCR7 played a pivotal role in the self-communication of immune clusters. This study elucidates immune exclusion and immune activation patterns in HCC and identifies relevant factors contributing to immune resistance.

在肝细胞癌(HCC)中,瘤内免疫浸润在与肿瘤细胞的相互作用中起着关键作用。然而,其表型和相关的空间结构仍然难以捉摸。为了解决这些局限性,我们结合空间数据(来自 8 个样本的 38,191 个点)和单细胞数据(来自 20 个样本的 56,022 个细胞)进行了一项综合研究。我们的分析揭示了两种不同的浸润模式:免疫排斥和免疫激活。浆细胞是肿瘤内免疫集群的主要细胞类型。值得注意的是,我们观察到 CCL19+ 成纤维细胞与浆细胞共定位,浆细胞分泌趋化因子,促进 T 细胞活化和白细胞迁移。相反,在免疫排斥样本中,这种共定位主要出现在邻近的正常区域。这种共定位与 T 细胞浸润和三级淋巴结构的形成有关,对 20 个 HCC 样本进行的多重免疫荧光验证了这一点。CCL19+成纤维细胞和浆细胞都与良好的生存结果有关。在免疫疗法队列中,反应良好的 HCC 患者表现出较高的 CCL19+ 成纤维细胞和浆细胞浸润。此外,在免疫排斥样本中,我们观察到 DKK1+ 肿瘤细胞在肿瘤区域内聚集,尤其是在肿瘤边界,这抑制了 CCL19+ 成纤维细胞和浆细胞向肿瘤区域的浸润。此外,在免疫排斥样本中,SPP1 信号通路在肿瘤和免疫集群之间的通讯中表现出最高的活性,而 CCL19-CCR7 在免疫集群的自我通讯中起着关键作用。这项研究阐明了HCC的免疫排斥和免疫激活模式,并确定了导致免疫抵抗的相关因素。
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引用次数: 0
SIRT6-dependent functional switch via K494 modifications of RE-1 silencing transcription factor. 通过对 RE-1 沉默转录因子的 K494 修饰实现 SIRT6 依赖性功能转换
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-07 DOI: 10.1038/s41419-024-07160-0
Adam Zaretsky, Alfredo Garcia Venzor, Ekaterina Eremenko, Daniel Stein, Dmitrii Smirnov, Yuval Rabuah, Rebecca Dryer, Dmitrii Kriukov, Shai Kaluski-Kopatch, Monica Einav, Ekaterina Khrameeva, Debra Toiber

RE-1 silencing transcription factor (REST) is a key repressor of neural genes. REST is upregulated under stress signals, aging and neurodegenerative diseases, but although it is upregulated, its function is lost in Alzheimer's Disease. However, why it becomes inactive remains unclear. Here, we show that the NAD-dependent deacetylase SIRT6 regulates REST expression, location and activity. In the absence of SIRT6, REST is overexpressed but mislocalized, leading to a partial loss of its activity and causing it to become toxic. SIRT6 deficiency abrogates REST and EZH2 interaction, perturbs the location of REST to the heterochromatin Lamin B ring, and leads to REST target gene overexpression. SIRT6 reintroduction or REST methyl-mimic K494M expression rescues this phenotype, while an acetyl-mimic mutant loses its function even in WT cells. Our studies define a novel regulatory switch where, depending on SIRT6 presence, the function of REST is regulated by post-translational modifications on K494 (Ac/me), affecting neuronal gene expression. In WT cells (left), REST functions as a repressor due to its methylation, which allows proper localization and interaction with EZH2. In SIRT6 KO cells (right), REST is overexpressed, but it is mislocalized and acetylated instead of methylated, impairing its interaction with EZH2. REST localizes in the cytoplasm in autophagosomes. The overall increase in REST without SIRT6 results in non-functional and toxic REST proteins. During aging, SIRT6 declines in the brain, while REST is upregulated to protect it. In pathological aging, where SIRT6 levels are very low, the increase in REST without SIRT6 results in non-functional and toxic REST.

RE-1 沉默转录因子(REST)是神经基因的关键抑制因子。REST在压力信号、衰老和神经退行性疾病中上调,但在阿尔茨海默病中虽然上调,但功能却丧失了。然而,它失去活性的原因仍不清楚。在这里,我们发现 NAD 依赖性去乙酰化酶 SIRT6 可调控 REST 的表达、位置和活性。在缺乏 SIRT6 的情况下,REST 会过度表达但定位错误,导致其部分活性丧失并产生毒性。SIRT6 缺乏会削弱 REST 与 EZH2 的相互作用,扰乱 REST 在异染色质 Lamin B 环上的定位,并导致 REST 靶基因过度表达。SIRT6的重新引入或REST甲基模拟物K494M的表达可挽救这种表型,而乙酰基模拟物突变体即使在WT细胞中也会丧失其功能。我们的研究确定了一种新的调控开关,根据 SIRT6 的存在,REST 的功能受 K494(Ac/me)翻译后修饰的调控,从而影响神经元基因的表达。在 WT 细胞中(左图),REST 因甲基化而发挥抑制作用,从而可以正确定位并与 EZH2 相互作用。在 SIRT6 KO 细胞(右)中,REST 过量表达,但它定位错误,乙酰化而非甲基化,从而影响了它与 EZH2 的相互作用。REST 定位于细胞质中的自噬体。在没有 SIRT6 的情况下,REST 的整体增加会导致 REST 蛋白失去功能和毒性。在衰老过程中,大脑中的 SIRT6 会减少,而 REST 会上调以保护大脑。在病理衰老过程中,SIRT6 的水平非常低,没有 SIRT6 的 REST 增加会导致 REST 蛋白失去功能并产生毒性。
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引用次数: 0
Metformin improves HPRT1-targeted purine metabolism and repairs NR4A1-mediated autophagic flux by modulating FoxO1 nucleocytoplasmic shuttling to treat postmenopausal osteoporosis. 二甲双胍通过调节 FoxO1 核胞质穿梭改善 HPRT1 靶向嘌呤代谢并修复 NR4A1 介导的自噬通量,从而治疗绝经后骨质疏松症。
IF 8.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-06 DOI: 10.1038/s41419-024-07177-5
Keda Yang, Xiaochuan Wang, Chi Zhang, Dian Liu, Lin Tao

Osteoporosis is a major degenerative metabolic bone disease that threatens the life and health of postmenopausal women. Owing to limitations in detection methods and prevention strategy awareness, the purpose of osteoporosis treatment is more to delay further deterioration rather than to fundamentally correct bone mass. We aimed to clarify the pathogenesis of postmenopausal osteoporosis and optimize treatment plans. Our experiments were based on previous findings that oxidative stress mediates bone metabolism imbalance after oestrogen deficiency. Through energy metabolism-targeted metabolomics, we revealed that purine metabolism disorder is the main mechanism involved in inducing oxidative damage in bone tissue, which was verified via the use of machine-learning data from human databases. Xanthine and xanthine oxidase were used to treat osteoblasts to construct a purine metabolism disorder model. The activity and differentiation ability of osteoblasts decreased after X/XO treatment. Transcriptomic sequencing indicated that autophagic flux damage was involved in purine metabolism-induced oxidative stress in osteoblasts. Additionally, we performed serum metabolomics combined with network pharmacology to determine the pharmacological mechanism of metformin in the treatment of postmenopausal osteoporosis. HPRT1 was the potential target filtered from the hub genes, and FoxO1 signalling was the key pathway mediating the effect of metformin in osteoblasts. We also revealed that SIRT3-mediated deacetylation promoted the nuclear localization of FoxO1 to increase the expression of HPRT1. HPRT1 upregulation promoted purine anabolism and prevented the accumulation of ROS caused by purine catabolism to reverse oxidative damage in osteoblasts. We propose that purine metabolism disorder-induced oxidative stress is important for the pathogenesis of postmenopausal osteoporosis. The therapeutic mechanism of metformin should be confirmed through subsequent drug optimization and development studies to improve bone health in postmenopausal women.

骨质疏松症是一种严重的退行性代谢性骨病,威胁着绝经后妇女的生命和健康。由于检测方法和预防策略认识的局限性,骨质疏松症治疗的目的更多的是延缓进一步恶化,而不是从根本上纠正骨量。我们的目的是阐明绝经后骨质疏松症的发病机制,优化治疗方案。我们的实验基于之前的发现,即氧化应激介导了雌激素缺乏后的骨代谢失衡。通过能量代谢靶向代谢组学研究,我们揭示了嘌呤代谢紊乱是诱导骨组织氧化损伤的主要机制,这一点通过使用来自人类数据库的机器学习数据得到了验证。利用黄嘌呤和黄嘌呤氧化酶处理成骨细胞,构建了嘌呤代谢紊乱模型。X/XO处理后,成骨细胞的活性和分化能力下降。转录组测序表明,自噬通路损伤参与了嘌呤代谢诱导的成骨细胞氧化应激。此外,我们还进行了血清代谢组学与网络药理学相结合的研究,以确定二甲双胍治疗绝经后骨质疏松症的药理机制。HPRT1是从中枢基因中筛选出的潜在靶点,而FoxO1信号传导是二甲双胍对成骨细胞产生作用的关键途径。我们还发现,SIRT3 介导的去乙酰化促进了 FoxO1 的核定位,从而增加了 HPRT1 的表达。HPRT1 的上调促进了嘌呤的合成代谢,阻止了嘌呤分解代谢引起的 ROS 的积累,从而逆转了成骨细胞的氧化损伤。我们认为,嘌呤代谢紊乱诱导的氧化应激是绝经后骨质疏松症的重要发病机制。二甲双胍的治疗机制应通过后续的药物优化和开发研究加以证实,以改善绝经后妇女的骨健康。
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Cell Death & Disease
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