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Lactylation in colorectal cancer: Unveiling novel mechanisms in metabolism, progression and therapeutic targeting. 结直肠癌的乳酸化:揭示代谢、进展和治疗靶向的新机制。
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-01 DOI: 10.1002/ctm2.70629
Ming Liu, Weiwei Li, Yi Ji, Yanqing Chen, Guoli Wei, Jiege Huo, Tao Gui

Background: Colorectal cancer is a leading cause of cancer mortality characterised by a unique metabolic microenvironment and complex interactions with the gut microbiota. Lactylation, a novel post-translational modification derived from lactate, has emerged as a key epigenetic regulator connecting metabolic reprogramming to gene expression. While its general roles in cancer are recognised, the tissue-specific regulatory network of lactylation in colorectal cancer-particularly its interplay with the gut microbiome and specific chemotherapy resistance mechanisms-remains underexplored.

Main body: This review systematically dissects the dynamic 'writer‒eraser‒reader' network of lactylation, highlighting its distinct oncogenic functions in colorectal cancer. We reveal a critical 'microbiome‒metabolism‒epigenetics' axis in which gut flora-derived metabolites (including D-lactate) remodel the tumour microenvironment and drive immune evasion. Beyond histone modifications, we emphasise the pivotal role of non-histone lactylation targets (e.g., eEF1A2, PD-L1) in orchestrating malignant proliferation and promoting liver metastasis by priming the pre-metastatic niche. Furthermore, we elucidate novel mechanisms by which lactylation induces resistance to standard chemotherapeutic agents (5-fluorouracil and oxaliplatin), specifically through the enhancement of DNA repair and the suppression of ferroptosis. We also critically evaluate the pharmacological challenges hindering clinical translation, such as the poor selectivity of current broad-spectrum inhibitors.

Short conclusion: Lactylation serves as a fundamental metabolic‒epigenetic link driving aggressive phenotypes in colorectal cancer. By delineating these tissue-specific mechanisms and proposing next-generation site-specific targeting strategies, this review provides a theoretical foundation for developing precision medicine interventions to overcome therapy resistance in colorectal cancer patients.

背景:结直肠癌是癌症死亡的主要原因,其特点是独特的代谢微环境和与肠道微生物群的复杂相互作用。乳酸酰化是一种源于乳酸的翻译后修饰,是连接代谢重编程和基因表达的关键表观遗传调控因子。虽然其在癌症中的一般作用已被认识到,但结直肠癌中乳酸化的组织特异性调节网络,特别是其与肠道微生物群和特异性化疗耐药机制的相互作用,仍未得到充分探索。正文:本文系统剖析了乳酸化的动态“书写-擦除-阅读”网络,强调了其在结直肠癌中的独特致癌功能。我们揭示了一个关键的“微生物-代谢-表观遗传学”轴,其中肠道菌群衍生的代谢物(包括d -乳酸)重塑肿瘤微环境并驱动免疫逃避。除了组蛋白修饰,我们强调非组蛋白乳酸化靶点(例如,eEF1A2, PD-L1)在协调恶性增殖和通过启动转移前生态位促进肝转移中的关键作用。此外,我们阐明了乳酸化诱导对标准化疗药物(5-氟尿嘧啶和奥沙利铂)耐药的新机制,特别是通过增强DNA修复和抑制铁凋亡。我们还批判性地评估了阻碍临床转化的药理学挑战,例如当前广谱抑制剂的低选择性。简短的结论:乳酸化是结肠直肠癌侵袭性表型驱动的基本代谢-表观遗传联系。通过描述这些组织特异性机制并提出下一代位点特异性靶向策略,本综述为开发精确医学干预措施以克服结直肠癌患者的治疗耐药提供了理论基础。
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引用次数: 0
Beyond bacterial defences: the role of lysozyme in cancer 超越细菌防御:溶菌酶在癌症中的作用。
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-01 DOI: 10.1002/ctm2.70575
Lei Wang, Qian Dong, Fuchu He, Zhiwen Gu, Aihua Sun

Lysozyme (LYZ) is a naturally occurring antimicrobial protein first discovered in the 1920s. As a key component of innate immunity, its antimicrobial effects and immunomodulatory functions in bacterial defence have been extensively characterized. However, emerging evidence since the 1950s has revealed its complex involvement in tumour progression, with conflicting reports of both tumour-suppressive and tumour-promoting effects across different cancer types. A critical knowledge gap remains in understanding the mechanistic basis for this duality, exacerbated by reliance on single-omics approaches and small cohorts in previous studies. This review focuses on mammalian C-type LYZ (referred to as LYZ hereafter unless specified) and integrates multi-omics data (transcriptomics and proteomics) with clinical and mechanistic research to systematically dissect its dual roles in cancer. By analysing cross-cancer heterogeneity through multi-omics perspectives, we emphasize its dual promise as both a prognostic biomarker and an actionable therapeutic target, aiming to provide new insights for precision oncology.

Key points

  • LYZ is a multi-functional secreted factor that encompasses both antibacterial and immunomodulatory functions.
  • Emerging evidence highlights its complex role in tumour progression by directly influencing tumour cells and modulating the immune microenvironment.
  • LYZ is a promising potential biomarker and therapeutic target in some cancers.
溶菌酶(LYZ)是一种天然存在的抗菌蛋白,于20世纪20年代首次被发现。作为先天免疫的重要组成部分,其抗菌作用和在细菌防御中的免疫调节功能已被广泛研究。然而,自20世纪50年代以来,新出现的证据揭示了它与肿瘤进展的复杂关系,在不同的癌症类型中,肿瘤抑制和肿瘤促进作用的报道相互矛盾。在理解这种二元性的机制基础上,一个关键的知识差距仍然存在,由于依赖于单组学方法和以前的研究中的小队列而加剧。本文以哺乳动物c型LYZ(以下简称LYZ)为研究对象,结合多组学数据(转录组学和蛋白质组学)与临床和机制研究,系统剖析其在癌症中的双重作用。通过从多组学角度分析跨肿瘤异质性,我们强调其作为预后生物标志物和可操作治疗靶点的双重前景,旨在为精准肿瘤学提供新的见解。重点:LYZ是一种兼具抗菌和免疫调节功能的多功能分泌因子。新出现的证据强调了它通过直接影响肿瘤细胞和调节免疫微环境在肿瘤进展中的复杂作用。LYZ是一种很有潜力的生物标志物和治疗靶点。
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引用次数: 0
Decreased adipokine CTRP4 in CAD patients: CTRP4 attenuates atherosclerosis via inhibition of RAGE and TLR4. 冠心病患者脂肪因子CTRP4降低:CTRP4通过抑制RAGE和TLR4减轻动脉粥样硬化。
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-01 DOI: 10.1002/ctm2.70624
Xinyi Shu, Feifei Li, Jiawei Chen, Xinrui Wu, Leyuan Tao, Abulikemu Amuti, Shuai Chen, Jinwei Quan, Jingmeng Liu, Yipaerguli Maimati, Fenghua Ding, Ying Shen, Qiujing Chen, Weifeng Shen, Ruiyan Zhang, Yang Dai, Xiaoqun Wang, Lin Lu

Background: C1q/TNF-related proteins (CTRPs) belong to the adipokine family. Here, we aimed to assess the relation of CTRP4 levels in serum and perivascular adipose tissue (PVAT) with coronary artery disease (CAD), and investigate the effect of CTRP4 on atherosclerosis and the underlying mechanisms.

Methods: CTRP4 levels were examined in serum and epicardial adipose tissue (a major PVAT) from patients with CAD. Atherosclerotic lesions were analysed in CTRP4‒/‒/ApoE‒/‒ and ApoE‒/‒ mice. The paracrine effects of CTRP4 on atherosclerosis were tested by supplementation with CTRP4, either via PVAT transplantation or tail vein injection in CTRP4-/-/ApoE-/- mice. CTRP4-interacting proteins were identified using immunoprecipitation and mass spectrometry.

Results: CTRP4 levels were lower in serum and epicardial adipose tissue of patients with CAD compared to non-CAD controls. CTRP4 knockout promoted atherosclerosis in ApoE‒/‒ mice. Supplementation of CTRP4, but not receptor for advanced glycation end-products (RAGE)- and toll-like receptor 4 (TLR4)-binding incompetent CTRP4 mutant, either through adipose tissue transplantation from wild-type mice or intravenous injection of recombinant protein, attenuated atherosclerosis in CTRP4‒/‒/ApoE‒/‒ mice. In macrophages, CTRP4 protein, but not the mutant, suppressed the expression of lipopolysaccharide-induced inflammatory cytokines. Mechanistically, the anti-atherogenic effects of CTRP4 were mediated by the engagement and inhibition of RAGE and TLR4.

Conclusions: Decreased CTRP4 levels in serum and epicardial adipose tissue are associated with CAD in patients. CTRP4 deficiency promotes the development of atherosclerosis in ApoE‒/‒ mice, whereas CTRP4 supplementation attenuates atherosclerosis via binding and inhibition of RAGE and TLR4. These results suggest that CTRP4 is a novel anti-inflammatory and anti-atherogenic adipokine inversely associated with CAD and a potential therapeutic target.

背景:C1q/ tnf相关蛋白(CTRPs)属于脂肪因子家族。在此,我们旨在评估血清和血管周围脂肪组织(PVAT)中CTRP4水平与冠状动脉疾病(CAD)的关系,并探讨CTRP4对动脉粥样硬化的影响及其机制。方法:检测冠心病患者血清和心外膜脂肪组织(主要PVAT) CTRP4水平。在CTRP4 - / - /ApoE - / -和ApoE - / -小鼠中分析动脉粥样硬化病变。在CTRP4-/-/ApoE-/-小鼠中,通过PVAT移植或尾静脉注射CTRP4来检测CTRP4对动脉粥样硬化的旁分泌作用。利用免疫沉淀和质谱法鉴定ctrp4相互作用蛋白。结果:冠心病患者血清和心外膜脂肪组织中CTRP4水平低于非冠心病对照组。敲除CTRP4促进ApoE - / -小鼠动脉粥样硬化。通过野生型小鼠的脂肪组织移植或静脉注射重组蛋白,补充CTRP4,而不是晚期糖基化终产物受体(RAGE)和toll样受体4 (TLR4)结合的不合格CTRP4突变体,可以减轻CTRP4 - / - /ApoE - / -小鼠的动脉粥样硬化。在巨噬细胞中,CTRP4蛋白而非突变体抑制脂多糖诱导的炎症细胞因子的表达。在机制上,CTRP4的抗动脉粥样硬化作用是通过RAGE和TLR4的参与和抑制介导的。结论:血清和心外膜脂肪组织CTRP4水平降低与冠心病患者有关。CTRP4缺乏促进ApoE - / -小鼠动脉粥样硬化的发展,而CTRP4补充通过结合和抑制RAGE和TLR4来减轻动脉粥样硬化。这些结果表明,CTRP4是一种新的抗炎和抗动脉粥样硬化脂肪因子,与CAD呈负相关,是一个潜在的治疗靶点。
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引用次数: 0
Adipocyte fatty acid-binding protein as a cerebrospinal fluid–accessible biomarker and druggable target in subarachnoid haemorrhage: Linking fatty acid dysregulation to microglial neuroinflammation 脂肪细胞脂肪酸结合蛋白在蛛网膜下腔出血中作为脑脊液可及的生物标志物和药物靶点:脂肪酸失调与小胶质神经炎症的联系
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-01-30 DOI: 10.1002/ctm2.70607
Xingwu Liu, Shenquan Guo, Xin Feng, Hao Tian, Lei Jin, Boyang Wei, Wenchao Liu, Xin Zhang, Ran Li, Zhiyuan Zhu, Jingjing Kong, Xifeng Li, Lingling Shu, Chuanzhi Duan

Background

Subarachnoid haemorrhage (SAH), a devastating subtype of stroke, is predominantly caused by the rupture of intracranial aneurysms. Emerging evidence indicates that the risk of intracranial aneurysm rupture correlates with elevated serum levels of fatty acids and pro-inflammatory cytokines. Moreover, increased serum concentrations of adipocyte fatty acid-binding protein (A-FABP), an inflammation-related adipokine, have been associated with poorer prognosis in SAH. However, the precise roles of A-FABP in SAH pathogenesis and its biomarker potential in cerebrospinal fluid (CSF) remain unclear.

Methods

CSF from 40 SAH patients and 30 controls was analysed by targeted fatty acid metabolomics. Experimental SAH mice were induced by endovascular perforation in both genetic deletion and pharmacological inhibition of A-FABP. Brain injury was quantified by neurobehavioural test, inflammatory cytokine expression and TUNEL staining. In vitro, conditioned medium from fatty acid-stimulated microglia was applied to primary neurons to evaluate apoptosis. Microglial metabolic reprogramming was assayed with Seahorse XF assays.

Results

CSF revealed significant metabolic disruption in SAH, characterized by arachidonic acid (AA), linoleic acid and palmitic acid (PA). Enrichment analysis implicated A-FABP plays a crucial role in SAH pathogenesis. Notably, elevated A-FABP levels independently predicted increased SAH severity and poorer prognosis. In mice model of SAH, A-FABP was significantly upregulated in microglia. Genetic deletion and pharmacological inhibition of A-FABP significantly ameliorated brain injury, including neurological deficits, neuroinflammation and neuronal apoptosis. Mechanistically, PA and AA promoted BV2 microglial inflammation via an A-FABP-dependent manner, subsequently inducing apoptosis in co-cultured primary neurons. Moreover, A-FABP inhibition reprogrammed microglial metabolism, enhancing fatty acid β-oxidation and energy supply. Proteomics further identified the JAK2/STAT3 as a downstream pathway of A-FABP-mediated neuroinflammation.

Conclusions

A-FABP is a promising biomarker and translatable therapeutic target to improve SAH outcome. Targeting A-FABP disrupts fatty acids–driven neuroinflammation and microglial metabolic reprogramming to reduce brain injury after SAH.

背景:蛛网膜下腔出血(SAH)是一种破坏性的脑卒中亚型,主要由颅内动脉瘤破裂引起。新出现的证据表明,颅内动脉瘤破裂的风险与血清脂肪酸和促炎细胞因子水平升高有关。此外,脂肪细胞脂肪酸结合蛋白(A-FABP)(一种与炎症相关的脂肪因子)的血清浓度升高与SAH的预后较差有关。然而,A-FABP在SAH发病机制中的确切作用及其在脑脊液(CSF)中的生物标志物潜力尚不清楚。方法:采用靶向脂肪酸代谢组学方法对40例SAH患者和30例对照者的脑脊液进行分析。血管内穿孔诱导实验性SAH小鼠A-FABP基因缺失和药理抑制。采用神经行为试验、炎症细胞因子表达及TUNEL染色对脑损伤进行量化。体外将脂肪酸刺激的小胶质细胞条件培养基应用于原代神经元,观察细胞凋亡情况。用Seahorse XF检测小胶质细胞代谢重编程。结果:脑脊液显示SAH明显的代谢紊乱,以花生四烯酸(AA)、亚油酸和棕榈酸(PA)为特征。富集分析提示a - fabp在SAH发病机制中起关键作用。值得注意的是,A-FABP水平升高独立预测SAH严重程度增加和预后较差。在小鼠SAH模型中,A-FABP在小胶质细胞中显著上调。A-FABP基因缺失和药理抑制可显著改善脑损伤,包括神经功能缺损、神经炎症和神经元凋亡。在机制上,PA和AA通过a - fabp依赖的方式促进BV2小胶质细胞炎症,随后诱导共培养的原代神经元凋亡。此外,A-FABP抑制重编程小胶质细胞代谢,增强脂肪酸β-氧化和能量供应。蛋白质组学进一步确定JAK2/STAT3是a - fabp介导的神经炎症的下游途径。结论:a - fabp是一种有前景的生物标志物和可翻译的治疗靶点,可改善SAH的预后。靶向A-FABP破坏脂肪酸驱动的神经炎症和小胶质细胞代谢重编程,以减少SAH后的脑损伤。
{"title":"Adipocyte fatty acid-binding protein as a cerebrospinal fluid–accessible biomarker and druggable target in subarachnoid haemorrhage: Linking fatty acid dysregulation to microglial neuroinflammation","authors":"Xingwu Liu,&nbsp;Shenquan Guo,&nbsp;Xin Feng,&nbsp;Hao Tian,&nbsp;Lei Jin,&nbsp;Boyang Wei,&nbsp;Wenchao Liu,&nbsp;Xin Zhang,&nbsp;Ran Li,&nbsp;Zhiyuan Zhu,&nbsp;Jingjing Kong,&nbsp;Xifeng Li,&nbsp;Lingling Shu,&nbsp;Chuanzhi Duan","doi":"10.1002/ctm2.70607","DOIUrl":"10.1002/ctm2.70607","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Background</h3>\u0000 \u0000 <p>Subarachnoid haemorrhage (SAH), a devastating subtype of stroke, is predominantly caused by the rupture of intracranial aneurysms. Emerging evidence indicates that the risk of intracranial aneurysm rupture correlates with elevated serum levels of fatty acids and pro-inflammatory cytokines. Moreover, increased serum concentrations of adipocyte fatty acid-binding protein (A-FABP), an inflammation-related adipokine, have been associated with poorer prognosis in SAH. However, the precise roles of A-FABP in SAH pathogenesis and its biomarker potential in cerebrospinal fluid (CSF) remain unclear.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>CSF from 40 SAH patients and 30 controls was analysed by targeted fatty acid metabolomics. Experimental SAH mice were induced by endovascular perforation in both genetic deletion and pharmacological inhibition of A-FABP. Brain injury was quantified by neurobehavioural test, inflammatory cytokine expression and TUNEL staining. In vitro, conditioned medium from fatty acid-stimulated microglia was applied to primary neurons to evaluate apoptosis. Microglial metabolic reprogramming was assayed with Seahorse XF assays.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>CSF revealed significant metabolic disruption in SAH, characterized by arachidonic acid (AA), linoleic acid and palmitic acid (PA). Enrichment analysis implicated A-FABP plays a crucial role in SAH pathogenesis. Notably, elevated A-FABP levels independently predicted increased SAH severity and poorer prognosis. In mice model of SAH, A-FABP was significantly upregulated in microglia. Genetic deletion and pharmacological inhibition of A-FABP significantly ameliorated brain injury, including neurological deficits, neuroinflammation and neuronal apoptosis. Mechanistically, PA and AA promoted BV2 microglial inflammation via an A-FABP-dependent manner, subsequently inducing apoptosis in co-cultured primary neurons. Moreover, A-FABP inhibition reprogrammed microglial metabolism, enhancing fatty acid β-oxidation and energy supply. Proteomics further identified the JAK2/STAT3 as a downstream pathway of A-FABP-mediated neuroinflammation.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusions</h3>\u0000 \u0000 <p>A-FABP is a promising biomarker and translatable therapeutic target to improve SAH outcome. Targeting A-FABP disrupts fatty acids–driven neuroinflammation and microglial metabolic reprogramming to reduce brain injury after SAH.</p>\u0000 </section>\u0000 </div>","PeriodicalId":10189,"journal":{"name":"Clinical and Translational Medicine","volume":"16 2","pages":""},"PeriodicalIF":6.8,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12856223/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084426","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive tumour-immune profiling reveals TREM2+ tumour-associated macrophages facilitating lymph node metastasis in head and neck squamous cell carcinoma 综合肿瘤免疫谱显示TREM2+肿瘤相关巨噬细胞促进头颈部鳞状细胞癌的淋巴结转移。
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-01-30 DOI: 10.1002/ctm2.70604
Zhuokai Wu, Chixing Cheng, Zhaoxin Li, Minyi Ren, Hongxi Cao, Weijie Huang, Jun Wang, Lixian Wu, Tingyi Lee, Sien Zhang, Hanhao Zheng, Yixi Wang

Background

Lymph node (LN) metastasis is a well-established independent prognostic factor in head and neck squamous cell carcinoma (HNSCC). Formation of suppressive tumour immune microenvironment (TIME) is a major contributor to tumour immune evasion and metastasis. However, the TIME landscape underlying LN-metastatic HNSCC remains poorly elucidated.

Methods

A total of 688 866 single-cell transcriptomes across 212 HNSCC samples were integrated. Comprehensive bioinformatic analyses on single-cell RNA sequencing and microarray datasets revealed a TREM2+ tumour-associated macrophage (TAM) cluster associated with LN metastasis. The functional role of TREM2+ TAMs was investigated through multiplex immunohistochemistry (mIHC) staining in clinical HNSCC cohort and in vitro co-culture experiments. Furthermore, machine learning algorithms were employed to construct a prognostic model for HNSCC.

Results

Integrative single-cell analysis revealed the immunosuppressive TIME of LN-metastatic HNSCC, characterised by high infiltration of exhausted CD8+ T cells (CD8+ Tex). We identified a specific TREM2+ TAM cluster that was strongly associated with CD8+ Tex infiltration and LN metastasis. In vitro experiment confirmed that TREM2+ TAMs promoted CD8+ T cell exhaustion. Mechanistically, TREM2+ TAMs exhibited a terminally differentiated phenotype driven by ETV5, and secreted SPP1 to interact with CD44 on CD8+ T cells, thus upregulating BHLHE40 to promote CD8+ Tex formation. Clinically, a prognostic model based on TREM2+ TAM signature genes was trained to independently predict HNSCC outcomes.

Conclusions

This study delineates the mechanism that TREM2+ TAMs promote LN metastasis in HNSCC by facilitating CD8+ T cells exhaustion via SPP1–CD44–BHLHE40 axis, proposing TREM2+ TAMs as potential therapeutic target for HNSCC.

背景:淋巴结(LN)转移是头颈部鳞状细胞癌(HNSCC)的一个公认的独立预后因素。抑制性肿瘤免疫微环境(TIME)的形成是肿瘤免疫逃避和转移的重要因素。然而,淋巴结转移性HNSCC的时代背景仍然不清楚。方法:对212份HNSCC样本的688 866个单细胞转录组进行整合。对单细胞RNA测序和微阵列数据集的综合生物信息学分析显示,TREM2+肿瘤相关巨噬细胞(TAM)簇与淋巴结转移相关。在临床HNSCC队列和体外共培养实验中,通过多重免疫组化(mIHC)染色研究TREM2+ tam的功能作用。此外,采用机器学习算法构建HNSCC的预后模型。结果:综合单细胞分析揭示了ln转移性HNSCC的免疫抑制时间,其特征是耗竭的CD8+ T细胞(CD8+ Tex)的高浸润。我们发现了一个特定的TREM2+ TAM簇,它与CD8+ Tex浸润和淋巴结转移密切相关。体外实验证实TREM2+ tam促进CD8+ T细胞衰竭。机制上,TREM2+ tam表现出由ETV5驱动的终末分化表型,分泌SPP1与CD8+ T细胞上的CD44相互作用,从而上调BHLHE40,促进CD8+ Tex的形成。在临床上,基于TREM2+ TAM特征基因的预后模型被训练来独立预测HNSCC的预后。结论:本研究揭示了TREM2+ tam通过SPP1-CD44-BHLHE40轴促进CD8+ T细胞衰竭促进HNSCC LN转移的机制,提出tre2 + tam可能是HNSCC的潜在治疗靶点。
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引用次数: 0
Metabolic reprogramming of efferocytosis in the tumour microenvironment: From apoptotic-cell clearance to therapeutic targeting 肿瘤微环境中efferocytosis代谢重编程:从凋亡细胞清除到治疗靶向。
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-01-28 DOI: 10.1002/ctm2.70601
Qianlu Yang, Jie Yan, Qianxi Yang

Background

Efferocytosis is a critical physiological process in which phagocytes clear apoptotic cells to maintain tissue homeostasis. However, within the tumour microenvironment (TME), this process is systematically hijacked by tumour cells, transforming it into a key pathological mechanism that drives immunosuppression, tumour progression and therapeutic resistance.

Key findings

This review systematically elucidates the central role of metabolic reprogramming in this functional reversal, emphasising that efferocytosis is essentially an immunometabolic intersection process precisely regulated by metabolism. By releasing various metabolites such as ATP, lactate, adenosine and sphingosine-1-phosphate (S1P), apoptotic tumour cells not only recruit tumour-associated macrophages (TAMs) but also metabolically pre-program their functions, inducing polarisation towards a pro-tumourigenic M2-like phenotype. During the recognition stage, tumour cells exploit metabolic abnormalities, such as glycosylation and lipid oxidation, to modify surface ‘eat-me/don't-eat-me’ signals, thereby hijacking macrophage recognition and engulfment programs. Upon completion of engulfment, systemic reprogramming of amino acid, lipid and glucose metabolism occurs within macrophages. These metabolic alterations synergistically lock their immunosuppressive phenotype and establish a metabolic symbiosis between the tumour and stromal cells.

Conclusions

Based on these mechanisms, this review further explores translational strategies targeting the efferocytic–metabolic axis, aiming to reprogram the immunosuppressive efferocytosis into immune-activating events to overcome TME-mediated immunosuppression and enhance current therapeutic efficacy. By deeply dissecting the metabolic regulatory networks of efferocytosis, we aim to pave new directions for cancer immunotherapy, achieving a paradigm shift from ‘metabolic hijacking’ to ‘metabolic interventional therapy’.

背景:Efferocytosis是吞噬细胞清除凋亡细胞以维持组织稳态的重要生理过程。然而,在肿瘤微环境(TME)中,这一过程被肿瘤细胞系统地劫持,将其转化为驱动免疫抑制、肿瘤进展和治疗耐药性的关键病理机制。主要发现:这篇综述系统地阐明了代谢重编程在这种功能逆转中的核心作用,强调了efferocytosis本质上是一个由代谢精确调节的免疫代谢交叉过程。通过释放各种代谢物,如ATP、乳酸、腺苷和鞘氨醇-1-磷酸(S1P),凋亡的肿瘤细胞不仅招募肿瘤相关的巨噬细胞(tam),而且还代谢预编程其功能,诱导向促肿瘤的m2样表型极化。在识别阶段,肿瘤细胞利用代谢异常,如糖基化和脂质氧化,修改表面“吃我/不要吃我”信号,从而劫持巨噬细胞识别和吞噬程序。吞噬完成后,巨噬细胞内发生氨基酸、脂质和葡萄糖代谢的系统性重编程。这些代谢改变协同锁定其免疫抑制表型,并在肿瘤和基质细胞之间建立代谢共生关系。结论:基于上述机制,本综述进一步探讨了针对efferocytosis -metabolic轴的翻译策略,旨在将免疫抑制的efferocytosis重编程为免疫激活事件,以克服tme介导的免疫抑制,提高当前的治疗效果。通过深入剖析efferocytosis的代谢调节网络,我们的目标是为癌症免疫治疗铺平新的方向,实现从“代谢劫持”到“代谢介入治疗”的范式转变。
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引用次数: 0
deltaHED predicts survival and immune evasion in PD-1 blockade therapy: A multi-cohort study across three cancer types delhed预测PD-1阻断治疗中的生存和免疫逃避:一项跨三种癌症类型的多队列研究
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-01-28 DOI: 10.1002/ctm2.70595
Jianying Xu, Xiaoli Wei, Jicheng Yao, Ujjwal Mukund Mahajan, Ulf Dietrich Kahlert, Run Shi, Kaiying Zhang, Ahmed Alnatsha, Zhengyi Qian, Fei Han, Fenghua Wang

The prognostic relevance of HLA class I (HLA-I)-mediated immunity in cancer immunotherapy remains unclear. We introduce deltaHED, a novel metric that quantifies evolutionary divergence between germline and tumour-acquired HLA-I alleles, integrating both inherited and somatic immunogenetic variation. Using whole-exome sequencing, we analysed deltaHED across three independent cohorts: 164 patients with recurrent/metastatic nasopharyngeal carcinoma (RM/NPC) from the POLARIS-02 trial (PD-1 monotherapy), 88 melanoma patients receiving PD-1 monotherapy, and 477 esophageal squamous cell carcinoma (ESCC) patients from the JUPITER-06 trial (PD-1 plus chemotherapy vs. chemotherapy alone). High deltaHED was significantly associated with increased tumour mutational burden and neoantigen load (p < .001), but predicted worse progression-free survival (PFS) and overall survival (OS) in patients receiving PD-1 blockade across all three cancers. In ESCC, this association was observed only in the immunotherapy arm, not in patients treated with chemotherapy alone. High deltaHED also correlated with increased mutations in antigen-processing and T-cell receptor pathways. These findings establish deltaHED as a clinically relevant biomarker of immune divergence with potential to improve patient stratification and guide personalised immunotherapy strategies.

HLA-I类(HLA-I)介导的免疫在癌症免疫治疗中的预后相关性尚不清楚。我们引入了deltaHED,这是一种量化种系和肿瘤获得性hla - 1等位基因之间进化差异的新指标,整合了遗传和体细胞免疫遗传变异。使用全外外子组测序,我们分析了三个独立队列的delhed:来自POLARIS-02试验(PD-1单药治疗)的164例复发/转移性鼻咽癌(RM/NPC)患者,接受PD-1单药治疗的88例黑色素瘤患者,以及来自jupil -06试验(PD-1加化疗与单独化疗)的477例食管鳞状细胞癌(ESCC)患者。高delhed与肿瘤突变负荷和新抗原负荷增加显著相关(p
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引用次数: 0
High-throughput single-cell DNA methylation and chromatin accessibility co-profiling with SpliCOOL-seq SpliCOOL-seq的高通量单细胞DNA甲基化和染色质可及性共分析。
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-01-28 DOI: 10.1002/ctm2.70584
Qingmei Shen, Enze Deng, Ling Luo, Jingna Zhang, Qifeng Yang, Dan Su, Xiaoying Fan
<div> <section> <h3> Background</h3> <p>DNA methylation and chromatin accessibility are pivotal epigenetic regulators of gene expression and cellular identity, with significant implications in tumorigenesis and progression. Current single-cell multi-omics methods are limited in throughput and sensitivity, hindering comprehensive biomarker discovery.</p> </section> <section> <h3> Methods</h3> <p>We developed single-cell split-pool ligation-based multi-omics sequencing technology (SpliCOOL-seq), a high-throughput single-cell sequencing technology that simultaneously profiles whole-genome DNA methylation and chromatin accessibility in thousands of cells. By integrating in situ GpC methylation, universal Tn5 tagmentation, and split-pool combinatorial barcoding, SpliCOOL-seq achieves enhanced sensitivity and scalability.</p> </section> <section> <h3> Results</h3> <p>SpliCOOL-seq accurately distinguished lung cancer cell types based on genetic and multiple epigenetic modalities and revealed that the two DNA methyltransferase (DNMT) inhibitors, 5-Azacitidine and Decitabine, both cause large-scale demethylation but in distinct patterns. Applied to primary lung adenocarcinoma, SpliCOOL-seq identified tumour subclones within the tumour lesion and uncovered novel DNA methylation biomarkers (e.g., <i>FAM124B, SFN, OR7E47P</i>) associated with patient survival. Additionally, we demonstrated accelerated epigenetic ageing and mitotic activity in tumour subclones, providing new insights into tumorigenesis.</p> </section> <section> <h3> Conclusion</h3> <p>SpliCOOL-seq achieves parallel profiling of whole-genome DNA methylation and chromatin accessibility in the same individual cells in a high-throughput manner and is hopefully used to illustrate regulatory interactions under different cell states. SpliCOOL-seq enables high-resolution, multi-modal epigenetic profiling at single-cell resolution, offering a powerful platform for discovering cancer biomarkers. Its application reveals novel therapeutic targets and early-diagnostic markers, underscoring its potential in precision oncology.</p> </section> <section> <h3> Key points</h3> <div> <ul> <li>SpliCOOL-seq achieves high-throughput single-cell co-profiling of DNA methylation and chromatin accessibility.</li> <li>DNMT inhibitors caused cancer cell demethylation with divergent patterns.</li>
背景:DNA甲基化和染色质可及性是基因表达和细胞特性的关键表观遗传调控因子,在肿瘤的发生和发展中具有重要意义。目前的单细胞多组学方法在通量和灵敏度上受到限制,阻碍了生物标志物的全面发现。方法:我们开发了基于单细胞分裂池连接的多组学测序技术(SpliCOOL-seq),这是一种高通量单细胞测序技术,可以同时分析数千个细胞的全基因组DNA甲基化和染色质可及性。通过整合原位GpC甲基化、通用Tn5标记和分裂池组合条形码,SpliCOOL-seq实现了更高的灵敏度和可扩展性。结果:SpliCOOL-seq基于遗传和多种表观遗传方式准确区分肺癌细胞类型,并揭示两种DNA甲基转移酶(DNMT)抑制剂5-阿扎胞苷和地西他宾都引起大规模去甲基化,但模式不同。应用于原发性肺腺癌,SpliCOOL-seq鉴定了肿瘤病变内的肿瘤亚克隆,并发现了与患者生存相关的新的DNA甲基化生物标志物(如FAM124B、SFN、OR7E47P)。此外,我们证明了肿瘤亚克隆中加速的表观遗传老化和有丝分裂活性,为肿瘤发生提供了新的见解。结论:SpliCOOL-seq以高通量的方式实现了同一细胞中全基因组DNA甲基化和染色质可及性的平行分析,有望用于阐明不同细胞状态下的调控相互作用。SpliCOOL-seq能够在单细胞分辨率下实现高分辨率,多模态表观遗传分析,为发现癌症生物标志物提供了强大的平台。它的应用揭示了新的治疗靶点和早期诊断标记,强调了其在精确肿瘤学中的潜力。SpliCOOL-seq实现DNA甲基化和染色质可及性的高通量单细胞共谱分析。DNMT抑制剂以不同的模式引起癌细胞去甲基化。SpliCOOL-seq能够发现与LUAD肿瘤发生相关的基因。衰老和LUAD肿瘤发生可能具有相似的表观遗传改变。
{"title":"High-throughput single-cell DNA methylation and chromatin accessibility co-profiling with SpliCOOL-seq","authors":"Qingmei Shen,&nbsp;Enze Deng,&nbsp;Ling Luo,&nbsp;Jingna Zhang,&nbsp;Qifeng Yang,&nbsp;Dan Su,&nbsp;Xiaoying Fan","doi":"10.1002/ctm2.70584","DOIUrl":"10.1002/ctm2.70584","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Background&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;DNA methylation and chromatin accessibility are pivotal epigenetic regulators of gene expression and cellular identity, with significant implications in tumorigenesis and progression. Current single-cell multi-omics methods are limited in throughput and sensitivity, hindering comprehensive biomarker discovery.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We developed single-cell split-pool ligation-based multi-omics sequencing technology (SpliCOOL-seq), a high-throughput single-cell sequencing technology that simultaneously profiles whole-genome DNA methylation and chromatin accessibility in thousands of cells. By integrating in situ GpC methylation, universal Tn5 tagmentation, and split-pool combinatorial barcoding, SpliCOOL-seq achieves enhanced sensitivity and scalability.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;SpliCOOL-seq accurately distinguished lung cancer cell types based on genetic and multiple epigenetic modalities and revealed that the two DNA methyltransferase (DNMT) inhibitors, 5-Azacitidine and Decitabine, both cause large-scale demethylation but in distinct patterns. Applied to primary lung adenocarcinoma, SpliCOOL-seq identified tumour subclones within the tumour lesion and uncovered novel DNA methylation biomarkers (e.g., &lt;i&gt;FAM124B, SFN, OR7E47P&lt;/i&gt;) associated with patient survival. Additionally, we demonstrated accelerated epigenetic ageing and mitotic activity in tumour subclones, providing new insights into tumorigenesis.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Conclusion&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;SpliCOOL-seq achieves parallel profiling of whole-genome DNA methylation and chromatin accessibility in the same individual cells in a high-throughput manner and is hopefully used to illustrate regulatory interactions under different cell states. SpliCOOL-seq enables high-resolution, multi-modal epigenetic profiling at single-cell resolution, offering a powerful platform for discovering cancer biomarkers. Its application reveals novel therapeutic targets and early-diagnostic markers, underscoring its potential in precision oncology.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Key points&lt;/h3&gt;\u0000 \u0000 &lt;div&gt;\u0000 &lt;ul&gt;\u0000 \u0000 &lt;li&gt;SpliCOOL-seq achieves high-throughput single-cell co-profiling of DNA methylation and chromatin accessibility.&lt;/li&gt;\u0000 \u0000 &lt;li&gt;DNMT inhibitors caused cancer cell demethylation with divergent patterns.&lt;/li&gt;\u0000 \u0000 ","PeriodicalId":10189,"journal":{"name":"Clinical and Translational Medicine","volume":"16 2","pages":""},"PeriodicalIF":6.8,"publicationDate":"2026-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12848781/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146060477","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
DNTTIP1 drives leukaemogenesis through MiDAC-mediated epigenetic silencing of BMF DNTTIP1通过midac介导的BMF表观遗传沉默驱动白血病发生。
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-01-28 DOI: 10.1002/ctm2.70603
Ruolin Xiu, Yuzhu Ma, Yueying Gao, Yao Chen, Xinyu Li, Yue Wu, Meiling Sun, Qizhao Li, Yanhong Zhao, Shuqian Xu, Shengjin Fan, Yongsheng Li, Huitao Fan
<div> <section> <h3> Background</h3> <p>Acute leukaemia is a highly aggressive malignancy with significant unmet therapeutic needs, partly due to epigenetic dysregulation. Here, we uncover deoxynucleotidyl transferase terminal-interacting protein 1 (DNTTIP1) within the mitotic deacetylase complex (MiDAC) as a previously unrecognised epigenetic regulator crucial for leukaemic cell survival and elucidate its mechanistic and translational significance.</p> </section> <section> <h3> Methods</h3> <p>Using cellular, biochemical, and genetic perturbations, coupled with validation in multiple in vivo leukaemia mouse models, we characterised DNTTIP1's role in acute leukaemia. An integrated multi-omics analysis incorporating RNA-seq, cleavage under targets and tagmentation (CUT&Tag) and assay for transposase-accessible chromatin using sequencing (ATAC-seq) revealed that DNTTIP1 recruits histone deacetylase 1/2 (HDAC1/2) to silence BCL2-modifying factor (BMF) and drive leukaemogenesis, validated by chromatin immunoprecipitation quantitative PCR (ChIP-qPCR). Drug synergy assays identify poly(ADP-ribose) polymerase (PARP)/HDAC/BCL2 inhibitor combinatorial efficacy.</p> </section> <section> <h3> Results</h3> <p>DNTTIP1 depletion impaired MiDAC recruitment in acute leukaemia, leading to histone H3 lysine 27 (H3K27) hyperacetylation at the BMF promoter and reactivating this effector. Upregulated BMF disrupted BCL2-mediated survival, triggering coordinated autophagy and apoptosis. Combined HDAC1/2 and BCL2 inhibition exerts synergistic anti-leukaemic effects, a therapeutic strategy currently under clinical evaluation. Further, PARP inhibition profoundly enhanced this synergy by impairing DNA damage repair, unveiling a novel triple-combination strategy.</p> </section> <section> <h3> Conclusions</h3> <p>Our work defines the DNTTIP1‒HDAC1/2‒BMF axis as a pivotal epigenetic vulnerability in acute leukaemia and provides preclinical rationale for targeting this axis. These findings offer a validated biological framework for advancing this targeted combination therapy into clinical trials.</p> </section> <section> <h3> Key points</h3> <div> <ul> <li>DNTTIP1 is overexpressed in acute leukaemia and associated with poor prognosis.</li> <li>DNTTIP1 acts as a scaffold for the MiDAC complex, recruiting HDAC1/2 to silence BMF and inhibit leukaemic cell death.</li>
背景:急性白血病是一种高度侵袭性的恶性肿瘤,具有显著的未满足的治疗需求,部分原因是表观遗传失调。在这里,我们发现有丝分裂去乙酰化酶复合体(MiDAC)中的脱氧核苷酸转移酶末端相互作用蛋白1 (DNTTIP1)是一种以前未被识别的表观遗传调节剂,对白血病细胞存活至关重要,并阐明了其机制和翻译意义。方法:利用细胞、生化和遗传扰动,结合多种体内白血病小鼠模型的验证,我们表征了DNTTIP1在急性白血病中的作用。结合RNA-seq、靶下切割和标记(CUT&Tag)和转座酶可及染色质测序(ATAC-seq)的综合多组学分析显示,DNTTIP1招募组蛋白去乙酰化酶1/2 (HDAC1/2)沉默bcl2修饰因子(BMF)并驱动白血病发生,并通过染色质免疫沉淀定量PCR (ChIP-qPCR)验证。药物协同作用试验鉴定聚(adp -核糖)聚合酶(PARP)/HDAC/BCL2抑制剂联合疗效。结果:DNTTIP1缺失破坏了急性白血病中MiDAC的募集,导致BMF启动子上的组蛋白H3赖氨酸27 (H3K27)超乙酰化,并重新激活该效应物。上调的BMF破坏了bcl2介导的存活,触发协调的自噬和凋亡。联合抑制HDAC1/2和BCL2具有协同抗白血病作用,目前正在临床评估的治疗策略。此外,PARP抑制通过损害DNA损伤修复深刻地增强了这种协同作用,揭示了一种新的三重组合策略。结论:我们的研究将DNTTIP1-HDAC1/2-BMF轴定义为急性白血病的关键表观遗传易感性,并为靶向该轴提供了临床前依据。这些发现为推进这种靶向联合治疗进入临床试验提供了一个有效的生物学框架。重点:DNTTIP1在急性白血病中过表达,与预后不良相关。DNTTIP1作为MiDAC复合体的支架,募集HDAC1/2来沉默BMF并抑制白血病细胞死亡。DNTTIP1-HDAC1/2-BMF轴的药理破坏可损害白血病的发生。
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引用次数: 0
TIMP2 promotes AKI-CKD transition by inducing tubular maladaptive repair and cell senescence via targeting Wnt/β-catenin signalling TIMP2通过靶向Wnt/β-catenin信号传导,诱导小管适应性不良修复和细胞衰老,从而促进AKI-CKD转变。
IF 6.8 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-01-28 DOI: 10.1002/ctm2.70605
Dongxue Xu, Haichuan Yu, Jingjing Pang, Xiaoyu Zhang, Jun Jiang, Yiming Li, Zhiyong Peng

Background

Acute kidney injury (AKI) frequently progresses to chronic kidney disease (CKD), but the underlying mechanisms of this transition remain unclear. While TIMP2 is a known biomarker for AKI, its direct pathogenic role in the AKI-CKD transition has not been fully elucidated.

Methods

TIMP2 expression was evaluated in multiple murine models, including unilateral ischemia-reperfusion injury (UIR), unilateral ureteral obstruction (UUO), and cisplatin-induced nephropathy. To investigate its function, we employed a tubule-specific, inducible TIMP2 knockout mouse model (Ksp-CreERT2; TIMP2fl/fl) and a tubular overexpression model.

Results

TIMP2 was significantly upregulated during the AKI-CKD transition across all tested models. Tubule-specific deletion of TIMP2 markedly attenuated renal fibrosis, suppressed senescence-associated secretory phenotypes (SASP), and promoted tubular repair. Conversely, TIMP2 overexpression exacerbated cellular senescence and fibrotic remodeling. Mechanistically, TIMP2 was found to bind to the Wnt co-receptor LRP6, promoting its phosphorylation and subsequent β-catenin signaling activation, a process independent of its canonical matrix metalloproteinase (MMP) inhibitory function.

Conclusions

TIMP2 is a central mediator of maladaptive repair that links cell senescence and fibrotic reprogramming via the LRP6/β-catenin pathway. These findings suggest that TIMP2 serves not only as a biomarker but also as a potential therapeutic target for mitigating the AKI-CKD transition.

Highlights

  • TIMP2 is upregulated in injured renal tubules and promotes maladaptive repair and cell senescence.

  • Genetic deletion of TIMP2 in tubular epithelial cells attenuates renal fibrosis and improves mitochondrial function.

  • TIMP2 activates Wnt/β-catenin signalling by binding to LRP6 via an MMP-independent mechanism.

背景:急性肾损伤(AKI)经常进展为慢性肾脏疾病(CKD),但这种转变的潜在机制尚不清楚。虽然TIMP2是已知的AKI生物标志物,但其在AKI- ckd转变中的直接致病作用尚未完全阐明。方法:在单侧缺血再灌注损伤(UIR)、单侧输尿管梗阻(UUO)、顺铂肾病等多种小鼠模型中检测TIMP2的表达。为了研究其功能,我们采用了小管特异性、可诱导的TIMP2敲除小鼠模型(Ksp-CreERT2; TIMP2fl/fl)和小管过表达模型。结果:在所有被测试的模型中,TIMP2在AKI-CKD过渡期间显着上调。TIMP2小管特异性缺失可显著减轻肾纤维化,抑制衰老相关分泌表型(SASP),并促进小管修复。相反,TIMP2过表达加剧了细胞衰老和纤维化重塑。在机制上,TIMP2被发现与Wnt共受体LRP6结合,促进其磷酸化和随后的β-catenin信号激活,这一过程独立于其典型的基质金属蛋白酶(MMP)抑制功能。结论:TIMP2是通过LRP6/β-catenin通路连接细胞衰老和纤维化重编程的适应性不良修复的中心介质。这些发现表明TIMP2不仅可以作为生物标志物,还可以作为缓解AKI-CKD转变的潜在治疗靶点。重点:TIMP2在受损肾小管中上调,促进不适应修复和细胞衰老。小管上皮细胞中TIMP2基因缺失可减轻肾纤维化并改善线粒体功能。TIMP2通过不依赖于mmp的机制与LRP6结合,激活Wnt/β-catenin信号。
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引用次数: 0
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Clinical and Translational Medicine
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