Jacob E. Till, Ofer Gal-Rosenberg, Sophia G. Giliberto, Nicholas J. Seewald, Dominique G. Ballinger, Heather E. Samberg, Melinda R. Yin, Qiao-Li Wang, Samuele Cannas, Kristine N. Kim, Kyle Tien, Mohammed Sawi, Vidya Madineedi, C. Sloane Furniss, Vasilena Gocheva, Jonathan Nowak, Lauren K. Brais, Chen Yuan, Michael H. Rosenthal, Robert Roses, Ronald DeMatteo, Major Kenneth Lee, Charles Vollmer, Hersh Sagreiya, Mark H. O'Hara, Ruth Shemer, Brian Wolpin, Yuval Dor, Erica L. Carpenter
<p>Dear Editor,</p><p>Detecting pancreatic ductal adenocarcinoma (PDAC) early can yield dramatic improvements in overall survival (OS). Curative intent resection is typically indicated when the disease is localised to the pancreas. However, standard of care imaging lacks sensitivity to detect smaller occult metastases, often resulting in patients undergoing an unnecessary and morbid surgery, followed by early recurrence.<span><sup>1, 2</sup></span> While we have previously demonstrated detection of early-stage PDAC using exocrine pancreas methylation markers in cfDNA,<span><sup>3</sup></span> here we show that methylation markers, when combined with circulating tumour <i>KRAS</i> mutation detection and imaging measurements, can predict the presence of occult metastatic disease before curative intent surgery.</p><p>A convenience sample of patients was enrolled with written informed consent at the University of Pennsylvania Hospital (Philadelphia, PA), under IRB Protocol #822028, NCT02471170. Patients had previously untreated PDAC or were seen in the endoscopy clinic for routine screening (healthy controls) or non-cancer disease evaluation and monitoring (disease controls). Disease control patients’ diagnoses included pancreatic cyst, pancreatitis, intraductal papillary mucinous neoplasm, and other non-cancerous pancreatic conditions. Patients with PDAC were excluded for 1) insufficient imaging surveillance to identify occult metastases within 120 days of surgery or 2) receiving therapy for a second primary tumour ≤5 years of PDAC diagnosis. Clinical and demographic data were abstracted from the electronic medical record, including the presence of metastases within 120 days of surgery. Pathologic staging (pT and pN) was obtained for patients who completed surgery; otherwise, clinical staging was used. CA19-9 values for 69 of 75 naive resectable PDAC patients were abstracted from the medical record for a timepoint within 40 days of surgery. For 6 patients, an aliquot of previously frozen plasma was provided to the clinical laboratory at the University of Pennsylvania and analysed using the clinical protocol. See Supplemental Digital Content for elaboration of study methods. This study was performed in accordance with STARD 2015 guidelines.</p><p>We analysed plasma from a cohort of 176 patients, including PDAC and non-PDAC controls (Figure S1 and Tables S1 and S2), to explore whether cfDNA methylation markers (Figure S2 and Table S7), independent of tumour genomic profiling, distinguished PDAC patients with and without occult metastases. Building on the previous pancreas tissue methylome analysis,<span><sup>3</sup></span> we identified methylated or unmethylated loci in liver and lung tissue, the two most common sites of distant metastases for PDAC. We then adapted our methods to detect these loci in plasma cfDNA. For 75 patients with PDAC who had surgery without receiving neoadjuvant therapy (“naïve resectable”), the cfDNA concentration from exocrin
{"title":"Plasma cell-free DNA markers predict occult metastases in patients with resectable pancreatic ductal adenocarcinoma","authors":"Jacob E. Till, Ofer Gal-Rosenberg, Sophia G. Giliberto, Nicholas J. Seewald, Dominique G. Ballinger, Heather E. Samberg, Melinda R. Yin, Qiao-Li Wang, Samuele Cannas, Kristine N. Kim, Kyle Tien, Mohammed Sawi, Vidya Madineedi, C. Sloane Furniss, Vasilena Gocheva, Jonathan Nowak, Lauren K. Brais, Chen Yuan, Michael H. Rosenthal, Robert Roses, Ronald DeMatteo, Major Kenneth Lee, Charles Vollmer, Hersh Sagreiya, Mark H. O'Hara, Ruth Shemer, Brian Wolpin, Yuval Dor, Erica L. Carpenter","doi":"10.1002/ctm2.70573","DOIUrl":"10.1002/ctm2.70573","url":null,"abstract":"<p>Dear Editor,</p><p>Detecting pancreatic ductal adenocarcinoma (PDAC) early can yield dramatic improvements in overall survival (OS). Curative intent resection is typically indicated when the disease is localised to the pancreas. However, standard of care imaging lacks sensitivity to detect smaller occult metastases, often resulting in patients undergoing an unnecessary and morbid surgery, followed by early recurrence.<span><sup>1, 2</sup></span> While we have previously demonstrated detection of early-stage PDAC using exocrine pancreas methylation markers in cfDNA,<span><sup>3</sup></span> here we show that methylation markers, when combined with circulating tumour <i>KRAS</i> mutation detection and imaging measurements, can predict the presence of occult metastatic disease before curative intent surgery.</p><p>A convenience sample of patients was enrolled with written informed consent at the University of Pennsylvania Hospital (Philadelphia, PA), under IRB Protocol #822028, NCT02471170. Patients had previously untreated PDAC or were seen in the endoscopy clinic for routine screening (healthy controls) or non-cancer disease evaluation and monitoring (disease controls). Disease control patients’ diagnoses included pancreatic cyst, pancreatitis, intraductal papillary mucinous neoplasm, and other non-cancerous pancreatic conditions. Patients with PDAC were excluded for 1) insufficient imaging surveillance to identify occult metastases within 120 days of surgery or 2) receiving therapy for a second primary tumour ≤5 years of PDAC diagnosis. Clinical and demographic data were abstracted from the electronic medical record, including the presence of metastases within 120 days of surgery. Pathologic staging (pT and pN) was obtained for patients who completed surgery; otherwise, clinical staging was used. CA19-9 values for 69 of 75 naive resectable PDAC patients were abstracted from the medical record for a timepoint within 40 days of surgery. For 6 patients, an aliquot of previously frozen plasma was provided to the clinical laboratory at the University of Pennsylvania and analysed using the clinical protocol. See Supplemental Digital Content for elaboration of study methods. This study was performed in accordance with STARD 2015 guidelines.</p><p>We analysed plasma from a cohort of 176 patients, including PDAC and non-PDAC controls (Figure S1 and Tables S1 and S2), to explore whether cfDNA methylation markers (Figure S2 and Table S7), independent of tumour genomic profiling, distinguished PDAC patients with and without occult metastases. Building on the previous pancreas tissue methylome analysis,<span><sup>3</sup></span> we identified methylated or unmethylated loci in liver and lung tissue, the two most common sites of distant metastases for PDAC. We then adapted our methods to detect these loci in plasma cfDNA. For 75 patients with PDAC who had surgery without receiving neoadjuvant therapy (“naïve resectable”), the cfDNA concentration from exocrin","PeriodicalId":10189,"journal":{"name":"Clinical and Translational Medicine","volume":"16 1","pages":""},"PeriodicalIF":6.8,"publicationDate":"2026-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12813551/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145997405","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}