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A narrative review of coagulase-negative staphylococci in diabetic foot infections. 糖尿病足部感染中凝固酶阴性葡萄球菌的叙述性回顾。
IF 36.8 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-11-04 DOI: 10.1128/cmr.00121-25
Chloé Magnan,Lucile Plumet,Madjid Morsli,Catherine Dunyach-Remy,Cassandra Pouget,Albert Sotto,Virginie Molle,Jean-Philippe Lavigne
SUMMARYCoagulase-negative staphylococci (CoNS) are a group of bacteria commonly found on human skin and mucous membranes. Traditionally regarded as low-virulence microorganisms, they have gained recognition as significant pathogens in healthcare-associated infections, particularly among immunocompromised individuals and patients with indwelling medical devices. In diabetic foot infections (DFIs), CoNS can play a substantial role, particularly following previous antibiotic treatments or in the presence of indwelling devices. DFIs are usually polymicrobial, involving a mixture of aerobic and anaerobic bacteria. Although Staphylococcus aureus is recognized as the major pathogen, especially in Western countries, CoNS are increasingly emerging as significant pathogens in DFIs, including osteomyelitis. Their presence may complicate treatment by increasing the microbial burden and harboring antibiotic resistance mechanisms. The treatment of DFIs involving CoNS often requires a combination of antibiotics targeting both gram-positive and gram-negative bacteria, selected according to the severity of the infection and results of antibiotic susceptibility testing. This review aims to highlight the growing importance of CoNS in DFIs, discussing their pathogenic mechanisms, clinical implications, and the necessity for healthcare providers to consider their involvement in order to ensure effective treatment and successful patient outcomes. This narrative review aims to underscore the growing clinical relevance of CoNS in DFIs by exploring their pathogenic mechanisms, diagnostic challenges, and therapeutic implications. It emphasizes the need for clinicians to recognize CoNS as potential pathogens rather than mere contaminants and highlights the ongoing difficulty in distinguishing true infection from colonization. This distinction is critical for accurate diagnosis, appropriate antimicrobial stewardship, and the development of improved treatment strategies.
凝固酶阴性葡萄球菌(con)是一组常见于人体皮肤和粘膜的细菌。传统上被认为是低毒力微生物,它们已被认为是卫生保健相关感染的重要病原体,特别是在免疫功能低下的个体和留置医疗器械的患者中。在糖尿病足感染(dfi)中,con可发挥重要作用,特别是在既往抗生素治疗或留置装置存在的情况下。dfi通常是多微生物,包括好氧细菌和厌氧细菌的混合物。尽管金黄色葡萄球菌被认为是主要的病原体,特别是在西方国家,但在dfi中,con越来越多地成为重要的病原体,包括骨髓炎。它们的存在可能会增加微生物负担并具有抗生素耐药机制,从而使治疗复杂化。涉及con的dfi的治疗通常需要根据感染的严重程度和抗生素药敏试验结果选择针对革兰氏阳性菌和革兰氏阴性菌的联合抗生素。这篇综述旨在强调CoNS在dfi中日益增长的重要性,讨论其致病机制、临床意义,以及医疗保健提供者考虑其参与的必要性,以确保有效的治疗和成功的患者预后。这篇叙述性综述旨在通过探讨其致病机制、诊断挑战和治疗意义,强调在DFIs中con日益增长的临床相关性。它强调临床医生需要认识到con是潜在的病原体,而不仅仅是污染物,并强调了区分真正感染和定植的持续困难。这种区分对于准确诊断、适当的抗菌药物管理和改进治疗策略的发展至关重要。
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引用次数: 0
Current and future options for the treatment of serious infections due to carbapenem-resistant Pseudomonas aeruginosa 碳青霉烯耐药铜绿假单胞菌引起的严重感染的当前和未来治疗选择
IF 36.8 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-10-09 DOI: 10.1128/cmr.00233-24
Juan P. HorcajadaAna C. GalesBurcu IslerKeith S. KayeAndrea KwaCornelia B. LandersdorferMaria Milagro MonteroAntonio OliverJason M. PogueRyan K. ShieldsMaria Virginia VillegasDafna YahavDavid L. Paterson1Infectious Diseases Service, Hospital del Mar Research Institute (IMIM), Universitat Pompeu Fabra (UPF)16548https://ror.org/03a8gac78, Barcelona, Spain2CIBER of Infectious Diseases, CIBERINFEC, Institute of Health Carlos III637284, Madrid, Spain3Division of Infectious Diseases, Escola Paulista de Medicina, Universidade Federal de São Paulo (EPM-UNIFESP)58804, São Paulo, Brazil4Antimicrobial Resistance Institute of São Paulo, São Paulo, Brazil5Infectious Management Services, Princess Alexandra Hospital1966https://ror.org/04mqb0968, Brisbane, Australia6Centre for Clinical Research, Faculty of Medicine, University of Queensland420004https://ror.org/00rqy9422, Brisbane, Australia7Department of Medicine, Rutgers Robert Wood Johnson Medical School12287, New Brunswick, New Jersey, U..
Clinical Microbiology Reviews, Ahead of Print.
临床微生物学评论,提前印刷。
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引用次数: 0
Canonical fact versus hypothesis testing to decipher transmission of non-tuberculous and tuberculous mycobacteria: a comparative review. 规范事实与假设检验来破译非结核和结核分枝杆菌的传播:比较回顾。
IF 36.8 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-10-06 DOI: 10.1128/cmr.00228-24
Jean-François Guégan,Kayla M Fast,Christine Chevillon,Marina Cobos-Mayo,Alisa Aliaga-Samanez,Magdalene Dogbe,Matthew Scott,Kelly Waters,Melissa K Benbow,Jennifer L Pechal,Joseph P Receveur,Michael W Sandel,Heather R Jordan,M Eric Benbow
SUMMARYDespite the clinical relevance of major tuberculous pathogens to domestic animals and humans, the understanding of mycobacterial transmission modes, pathways, and interactions in their natural habitats remains very limited. The reason for this is primarily because ecological and evolutionary concepts have not yet been widely applied to the understanding of these bacteria. Most existing research on mycobacterial transmission is not founded on hypothesis testing but rather tends to accept the most recent explanation and turn it into a canonical fact. In this comparative review, we discuss plausible alternative hypotheses against a null hypothesis of environmental origin to intensify research on mycobacterial pathogens and their capacity to spread in the context of global change. We highlight a major bias in perceptions of mycobacterial infection transmission, with most work concentrating only on the contagious stage of tuberculous clones. We suggest broadening the field to include research on environmental non-tuberculous mycobacteria and their life histories. A deeper understanding of mycobacterial ecology and evolution is more important now than ever, considering the vast diversity of known and unknown mycobacterial species in natural ecosystems. Infectious disease medicine, veterinary science, and public health surveillance should take a more integrative disease ecology approach to enhance the development of new approaches for control of these animal and human pathogens.
尽管主要结核病原体与家畜和人类的临床相关性,但对分枝杆菌在其自然栖息地的传播模式、途径和相互作用的了解仍然非常有限。这主要是因为生态学和进化的概念还没有被广泛应用于对这些细菌的理解。大多数关于分枝杆菌传播的现有研究不是建立在假设检验的基础上,而是倾向于接受最新的解释,并将其变成一个规范的事实。在这篇比较综述中,我们讨论了对环境起源零假设的合理替代假设,以加强对分枝杆菌病原体及其在全球变化背景下传播能力的研究。我们强调了在分枝杆菌感染传播的认知上的主要偏见,大多数工作只集中在结核克隆的传染阶段。我们建议拓宽研究领域,包括对环境非结核分枝杆菌及其生活史的研究。考虑到自然生态系统中已知和未知分枝杆菌种类的巨大多样性,对分枝杆菌生态学和进化的深入了解比以往任何时候都更加重要。传染病医学、兽医科学和公共卫生监测应采取更加综合的疾病生态学方法,以加强开发控制这些动物和人类病原体的新方法。
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引用次数: 0
Twenty years of human bocavirus research: from an unculturable virus of unclear pathogenicity to a culturable human pathogen and gene therapy vector candidate. 二十年的人类博卡病毒研究:从一种致病性不明确的不可培养病毒到一种可培养的人类病原体和基因治疗载体候选。
IF 36.8 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-10-01 DOI: 10.1128/cmr.00173-24
Oliver Schildgen,Jianming Qiu,Mario Mietzsch,Tobias Allander,Tuomas Jartti,Verena Schildgen,Dirk Grimm,Maria Söderlund-Venermo
SUMMARYTwenty years after the first description of human bocavirus 1 (HBoV1) as a respiratory pathogen, significant progress has been made in both clinical and basic research; however, important clinical, diagnostic, and molecular challenges remain before bocavirus pathobiology is fully understood. The discovery of HBoV1 and its notorious prolonged shedding have challenged the new sensitive multiplex PCR panel-based diagnostic testing that replaced the old antigen assays, leading to erroneous classification of HBoV1 as an innocent bystander. Both sophisticated diagnostics and cytopathic effects in cell culture have now confirmed HBoV1 to be a common cause of upper and lower respiratory tract infections, mainly in children. While many questions have been answered, new questions have emerged as our understanding of parvoviruses has significantly expanded over the past two decades. In this review, key findings from 20 years of clinical, basic, and applied research on human bocaviruses are summarized and open questions highlighted to guide future investigations.
摘要:人类bocavavirus 1 (HBoV1)首次被描述为呼吸道病原体20年后,在临床和基础研究方面都取得了重大进展;然而,重要的临床,诊断和分子挑战仍然存在之前,博卡病毒的病理生物学完全了解。HBoV1病毒的发现及其臭名昭著的长时间脱落对新的基于多重PCR检测板的诊断检测提出了挑战,该检测取代了旧的抗原检测,导致HBoV1病毒被错误地归类为无辜的旁观者。复杂的诊断和细胞培养中的细胞病变效应现已证实HBoV1是上呼吸道和下呼吸道感染的常见原因,主要发生在儿童中。虽然许多问题已经得到了解答,但随着我们对细小病毒的了解在过去二十年中显著扩大,新的问题也出现了。在这篇综述中,总结了20年来人类博卡病毒的临床、基础和应用研究的主要发现,并强调了一些悬而未决的问题,以指导未来的研究。
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引用次数: 0
Fastidious or rarely isolated gram-negative rods with a particular focus on Kingella kingae. 挑剔的或很少分离的革兰氏阴性杆状体,特别集中在Kingella kingae上。
IF 36.8 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-25 DOI: 10.1128/cmr.00048-25
Reinhard Zbinden,Pablo Yagupsky
SUMMARYThe bacterial species covered in this review are taxonomically diverse. Kingella kingae, a well-known infectious agent of pediatric bacteremia and osteomyelitis as well as septic arthritis in children aged 6-36 months, is the focus of this review. Recent advances in molecular diagnostic tools have allowed new aspects of pathogenesis and transmission to be investigated since the last review of K. kingae in this journal. Asymptomatic oropharyngeal colonization with noninvasive strains can be distinguished from invasive clones, so that a positive detection in the oropharynx can be assumed to be compatible with a clinical entity caused by K. kingae. Furthermore, novel and uncommon infections could be attributed to K. kingae. Clinical and microbiological aspects of the other Kingella spp. and of the genera Actinobacillus, Aggregatibacter, Capnocytophaga, Cardiobacterium, Chromobacterium, Dysgonomonas, Eikenella, Pasteurella, Simonsiella, Streptobacillus, and Suttonella are discussed separately. The identification of most genera by phenotypic methods is difficult. Direct microscopy and phenotypic key reactions, as well as commercially available systems, allow identification of the frequently encountered human species. If accurate identification of uncommon isolates is a concern, molecular methods, such as 16S ribosomal RNA gene PCR/sequencing, are necessary. Matrix-assisted laser desorption ionization-time-of-flight mass spectrometry can also be helpful. Besides infections with only one infectious agent, all mentioned genera are often found in mixed infections. The accompanying bacteria and the clinical presentation might guide the antibiotic choice. In general, it can be said that empirical treatment of infections with the fastidious gram-negative rods based on the clinical picture sometimes fails due to antibiotic resistance. Susceptibility testing should be performed on all isolates according to the CLSI or EUCAST guidelines in order to adjust treatment if necessary.
本文所涉及的细菌种类在分类上是多样的。Kingella kingae是一种众所周知的6-36月龄儿童菌血症、骨髓炎和脓毒性关节炎的感染因子,是本综述的重点。自上一篇综述以来,分子诊断工具的最新进展使人们能够从新的方面研究金氏弧菌的发病机制和传播。无创菌株的无症状口咽部定植可以与侵入性克隆区分开来,因此口咽部检测阳性可以假设与K. kingae引起的临床实体相容。此外,新的和不常见的感染可能归因于K. kingae。其他金氏菌属和放线菌属、聚集菌属、嗜碳细胞菌属、心杆菌属、嗜铬菌属、厌氧单胞菌属、艾肯菌属、巴氏菌属、锡蒙菌属、链球菌属和苏氏菌属的临床和微生物学方面分别进行了讨论。用表型方法鉴定大多数属是困难的。直接显微镜和表型关键反应,以及商业上可用的系统,允许识别经常遇到的人类物种。如果要准确鉴定罕见的分离株,分子方法,如16S核糖体RNA基因PCR/测序是必要的。基质辅助激光解吸电离飞行时间质谱法也有帮助。除了只有一种感染原的感染外,上述所有属经常在混合感染中发现。伴随的细菌和临床表现可能指导抗生素的选择。一般来说,可以这样说,根据临床情况对严格的革兰氏阴性杆状体感染进行经验性治疗有时会由于抗生素耐药性而失败。应根据CLSI或EUCAST指南对所有分离株进行药敏试验,以便在必要时调整治疗。
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引用次数: 0
Optimized use and performance of culture for periprosthetic joint infection diagnosis: a comprehensive literature review. 优化使用和性能培养假体周围关节感染诊断:综合文献综述。
IF 36.8 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-18 DOI: 10.1128/cmr.00054-25
Jaime Esteban,Robin Patel,John-Jairo Aguilera-Correa,Sandra B Nelson,
SUMMARYPeriprosthetic joint infection (PJI) is a significant complication of arthroplasty. Implicit in the diagnosis of PJI is the presence of organisms in what should be a sterile milieu. Given limits to culture-based PJI diagnosis, optimal utilization of culture in the diagnostic approach to PJI needs clarification. Culture is important in confirming a PJI diagnosis and characterizing the infecting microorganism(s) to inform management. As part of the development of a unified definition of PJI (by a group representing multiple scientific societies), a systematic review was performed to inform the role of culture in the definition of PJI. In addition, a comprehensive review on synovial fluid and periprosthetic tissue collection for culture, and associated culture methodology and results interpretation, was performed to inform best practices. Gaps in the literature were identified to develop research priorities.
假体周围关节感染(PJI)是关节置换术的重要并发症。在PJI的诊断隐含是什么应该是无菌环境中存在的生物体。鉴于基于培养的PJI诊断的局限性,在PJI诊断方法中培养的最佳利用需要澄清。培养在确认PJI诊断和确定感染微生物特征以告知管理方面很重要。作为PJI统一定义发展的一部分(由代表多个科学学会的小组),进行了系统的回顾,以告知文化在PJI定义中的作用。此外,我们还全面回顾了用于培养的滑液和假体周围组织的收集,以及相关的培养方法和结果解释,以提供最佳实践。确定了文献中的空白,以确定研究重点。
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引用次数: 0
Sexually transmitted enteric infections in men who have sex with men. 男男性行为者的性传播肠道感染。
IF 36.8 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-17 DOI: 10.1128/cmr.00075-23
Kira L Newman,Gretchen Snoeyenbos Newman,Chase A Cannon,Ferric C Fang
SUMMARYSexual transmission of enteric infections (STEIs) among men who have sex with men (MSM) has been reported since the 1960s and is increasingly recognized since the widespread adoption of multiplex molecular diagnostics. However, the overall burden of sexually transmitted enteric infections has been difficult to ascertain, as the public health response to these infections and identification of transmission networks fall between the traditional groupings of sexually transmitted and foodborne diseases. The global emergence of extensively drug-resistant Shigella and Campylobacter infections among MSM and the potential for cross-over between different at-risk populations underscores the importance of timely diagnosis, appropriate treatment, and the need to consider community-level education and testing. Moreover, the possible impact of pre- and post-exposure prophylaxis for HIV and sexually transmitted infections on STEI is presently uncertain. This review examines our evolving understanding of STEI, discusses specific pathogens of urgent importance, and prioritizes areas for further study.
自20世纪60年代以来,男男性行为者(MSM)中肠道感染(stei)的性传播就有报道,随着多重分子诊断方法的广泛采用,这一现象得到了越来越多的认识。然而,性传播肠道感染的总体负担一直难以确定,因为对这些感染的公共卫生反应和传播网络的确定介于性传播疾病和食源性疾病的传统分类之间。全球范围内广泛耐药的志贺氏菌和弯曲杆菌感染在男男性行为者中出现,以及不同高危人群之间交叉感染的可能性,强调了及时诊断、适当治疗的重要性,以及考虑社区一级教育和检测的必要性。此外,艾滋病毒和性传播感染暴露前和暴露后预防对STEI的可能影响目前尚不确定。本文回顾了我们对STEI的不断发展的理解,讨论了迫切重要的特定病原体,并优先考虑了进一步研究的领域。
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引用次数: 0
Skin microbiota in atopic dermatitis: victim or executioner? 特应性皮炎的皮肤微生物群:受害者还是刽子手?
IF 19.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-11 Epub Date: 2025-06-03 DOI: 10.1128/cmr.00277-24
Chiara Maria Teresa Boggio, Federica Veronese, Marta Armari, Elisa Zavattaro, Elia Esposto, Paola Savoia, Barbara Azzimonti

SUMMARYAtopic dermatitis (AD) is a prevalent chronic inflammatory skin disorder, affecting 10%-20% of the population, characterized by dryness, intense itching, and recurrent rashes. The pathophysiology of AD is multifactorial, involving skin barrier dysfunction, immune dysregulation, genetic factors (such as filaggrin mutations), and environmental factors. The skin microbiota also plays a pivotal role in AD, serving both as a target and a driver of the disease. In AD, the delicate balance of the skin microbiota is disrupted, leading to a decrease in beneficial bacteria such as Streptococcus, Cutibacterium, and Corynebacterium. Concurrently, bacterial pathobionts, notably Staphylococcus aureus, proliferate and express their virulence factors excessively. This imbalance exacerbates symptoms by damaging the skin barrier, releasing toxins, and triggering a Th2-driven immune response, thus weakening the skin defenses and making individuals with AD more susceptible to bacterial, fungal, and viral infections, thereby complicating treatment and worsening disease outcomes. Effective AD management requires a thorough understanding of the interplay among the skin microbiota, the immune system, and microbial pathobionts. Strategies that restore the microbial balance, preserve the skin barrier, and modulate the immune response show significant potential for reducing infections and improving AD symptoms, highlighting the microbiota's dual role in AD pathology. This review examines the complex role of the skin microbiota in AD, emphasizing how dysbiosis both drives disease progression and influences immune responses, and vice versa. It also explores emerging microbiota-targeted therapies aimed at improving disease outcomes.

特应性皮炎(AD)是一种常见的慢性炎症性皮肤病,影响10%-20%的人群,其特征是干燥、强烈瘙痒和反复皮疹。AD的病理生理是多因素的,涉及皮肤屏障功能障碍、免疫失调、遗传因素(如聚丝蛋白突变)和环境因素。皮肤微生物群在阿尔茨海默病中也起着关键作用,既是疾病的目标,也是疾病的驱动因素。在阿尔茨海默病中,皮肤微生物群的微妙平衡被破坏,导致有益细菌如链球菌、表皮杆菌和棒状杆菌减少。与此同时,以金黄色葡萄球菌为代表的病原菌大量增殖并过度表达其毒力因子。这种失衡通过破坏皮肤屏障、释放毒素和触发th2驱动的免疫反应加剧了症状,从而削弱了皮肤防御,使AD患者更容易受到细菌、真菌和病毒感染,从而使治疗复杂化并恶化疾病结果。有效的AD管理需要彻底了解皮肤微生物群、免疫系统和微生物病原体之间的相互作用。恢复微生物平衡、保护皮肤屏障和调节免疫反应的策略显示出减少感染和改善阿尔茨海默病症状的巨大潜力,突出了微生物群在阿尔茨海默病病理中的双重作用。这篇综述探讨了皮肤微生物群在AD中的复杂作用,强调了生态失调如何驱动疾病进展和影响免疫反应,反之亦然。它还探索了旨在改善疾病结果的新兴微生物群靶向疗法。
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引用次数: 0
Bacterial and fungal infections in persons who inject drugs. 注射毒品者的细菌和真菌感染。
IF 19.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-11 Epub Date: 2025-06-13 DOI: 10.1128/cmr.00162-23
Jeffrey Masters, David Goodman-Meza, Danielle Russell, Laura Marks, Erin McCreary, Brendan Jacka, Kate Seear, Joshua S Davis, Gail Matthews, Marianne Martinello, Steven Y C Tong, Gregory J Dore

SUMMARYPersons who inject drugs are at increased risk of bacterial and fungal injecting-related infections due to many physiological, societal, and structural factors. An estimated 15 million persons inject drugs worldwide, with recent increases in the burden of injecting-related infections. Acquisition of these infections has distinct pathophysiology and microbiology related to drug supply, drug composition, and the process of injecting. Clinical management of these infections is complicated by usual factors such as the need for source control and effective antibiotics, as well as the complex challenges faced by persons who inject drugs while in hospital. These challenges include drug withdrawal, difficult pain control related to opioid tolerance, stigma, discrimination, and lack of access to outpatient parenteral antibiotic therapy, which can lead to high rates of patient-directed discharge and non-completion of treatment with subsequent poor outcomes. This review seeks to provide an evidence-based summary of what is known about the risks, epidemiology, microbiology, and presentation of injecting-related bacterial and fungal infections, as well as provide recommendations for treatment, including pharmacological considerations, opportunistic screening, multidisciplinary team care, and approaches to outpatient therapy. It also provides insight into the medicolegal and ethical considerations of care for persons who inject drugs and a first-person perspective of someone with lived experience.

由于许多生理、社会和结构因素,注射吸毒者发生细菌和真菌注射相关感染的风险增加。全世界估计有1500万人注射毒品,注射相关感染的负担最近有所增加。这些感染的获得具有与药物供应、药物组成和注射过程相关的独特病理生理和微生物学。这些感染的临床管理因一些常见因素而变得复杂,例如需要进行源头控制和使用有效抗生素,以及住院期间注射吸毒者面临的复杂挑战。这些挑战包括药物停药、与阿片类药物耐受性相关的疼痛控制困难、污名化、歧视以及无法获得门诊肠外抗生素治疗,这可能导致患者自行出院率高、治疗未完成以及随后的不良结果。本综述旨在对已知的注射相关细菌和真菌感染的风险、流行病学、微生物学和表现进行循证总结,并提供治疗建议,包括药理学考虑、机会性筛查、多学科团队护理和门诊治疗方法。它还提供了对注射毒品者护理的医学、法律和伦理考虑的见解,并提供了有亲身经历的人的第一人称视角。
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引用次数: 0
Erratum for Kramer et al., 'How long do bacteria, fungi, protozoa, and viruses retain their replication capacity on inanimate surfaces? A systematic review examining environmental resilience versus healthcare-associated infection risk by "fomite-borne risk assessment"'. 对Kramer等人的勘误,“细菌、真菌、原生动物和病毒在无生命表面上的复制能力能保持多久?”通过“污染物传播风险评估”对环境恢复力与卫生保健相关感染风险进行系统审查。
IF 19.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-11 Epub Date: 2025-06-04 DOI: 10.1128/cmr.00129-25
Axel Kramer, Franziska Lexow, Anna Bludau, Antonia Milena Köster, Martin Misailovski, Ulrike Seifert, Maren Eggers, William Rutala, Stephanie J Dancer, Simone Scheithauer
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引用次数: 0
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Clinical Microbiology Reviews
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